ADHD200 preprocessed output data files

[Steven]

Hi @bassam.alfatly,

@bassam.alfatly

Specifically, what does “Volumes.noindex/Amazon S3.localized/ADHD200/Outputs/fmriprep/fmriprep/sub-0010002/ses-1/func/sub-0010002_ses-1_task-rest_run-1_space-MNI152NLin2009cAsym_desc-smoothAROMAnonaggr_bold.nii.gz” as an example represent?

This is the preprocessed data with ICA-AROMA non aggressively applied to it. As part of the process, the data are smoothed. You can read more about aggressive vs non-aggressive on other threads (e.g., ICA AROMA agg vs non-agg).

@bassam.alfatly

does it mean the full pipeline of xcp-d applied to it?

No, that is an fmriprep output.

@bassam.alfatly

and whether “Volumes.noindex/Amazon S3.localized/ADHD200/Outputs/fmriprep/fmriprep/sub-0010002/ses-1/func/sub-0010002_ses-1_task-rest_run-1_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz” would be preferred to be used (without AROMA) to build a group connectome?

That is up to you, some people prefer AROMA some do not.

@bassam.alfatly

I am trying to understand which one of them have global signal, csf and wm signal regressed out and which one has smoothing besides bandpass filtering to be precise!

Neither of them have global signal, csf, wm regressed out.

Best,
Steven