BCBToolkit Questions

186

Hi Chris and Michel,

I’m trying to use the normalisation feature of BCBtoolkit to normalise my lesion mask. The output of the enantiomorphic and normalised T1 file seemed alright, but the lesion masks had this weird white edge outside the skull alongside the lesion (using fsleyes the value of this white edge is 1.0). Unfortunately I can’t upload any attachment as a new user. Do you have any idea why this may be the case and how may I resolve this?

Thanks a lot!
Shangqi

187

Hi Shangqi,

Yes I know that issue with the enantiomorphic.
You can maybe just use a brain mask to get rid of this white ribbon?

Let me know if you succeed.
cheers

mich

188

Hi Michel,

Thank you for the quick response. The mask worked for me! I was worried before that the lesion mask might be problematic as well, but I suppose the only issue was with the white ribbons. Thanks for the help!

Best,
Shangqi