Just an update on my last email ->>
Just ran another subject, got same error message with " cann’t allocate memory" (below).
Commandline function: fmriprep-docker – fs-licence-file /usr/…/.txt data/in data/out participant --participitant_level 112 --low-mem --mem-mb 32000
Thanks
BL
Applying LTAtransformInterp (resample_type 1)
writing to /out/freesurfer/sub-112/mri/T2.prenorm.mgz...
mri_normalize -sigma 0.5 -nonmax_suppress 0 -min_dist 1 -aseg /out/freesurfer/sub-112/mri/aseg.presurf.mgz -surface /out/freesurfer/sub-112/surf/rh.white identity.nofile -surface /out/freesurfer/sub-112/surf/lh.white identity.nofile /out/freesurfer/sub-112/mri/T2.prenorm.mgz /out/freesurfer/sub-112/mri/T2.norm.mgz
znzTAGskip: tag=1077952576, failed to calloc 1077952512 bytes!
using Gaussian smoothing of bias field, sigma=0.500
disabling nonmaximum suppression
retaining points that are at least 1.000mm from the boundary
using segmentation for initial intensity normalization
reading from /out/freesurfer/sub-112/mri/T2.prenorm.mgz...
Cannot allocate memory
Linux 58f5f98badef 3.16.0-30-generic #40~14.04.1-Ubuntu SMP Thu Jan 15 17:43:14 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-112 exited with ERRORS at Tue Aug 7 11:56:22 UTC 2018
For more details, see the log file /out/freesurfer/sub-112/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Standard error:
Return code: 1
Sentry is attempting to send 1 pending error messages
Waiting up to 10 seconds
Press Ctrl-C to quit
fMRIPrep: Please report errors to https://github.com/poldracklab/fmriprep/issues