The updated version of dcm2bids (version 3/1/0) is adding a “bids::” before the actual location of the functional MRI scan in the IntendedForField. When this is added, fMRIprep can’t find our distortion scan. Is there a simple solution for this that doesn’t involve our having to update the json fi…

Hi @AustinBipolar , [image] AustinBipolar: Is there a simple solution for this that doesn’t involve our having to update the json file with a script? In short, no. But a python script with the json package should solve your issue easily. Also, fMRIPrep should eventually honor the BIDS URI, wh…

Hi, This is a similar discussion on the same issue: [image] Fmriprep Susceptibility distortion correction: None Yes it should support B0FieldSource/B0FieldIdentifier

Not super helpful to anybody right now, but the next release will have experimental support for BIDS-URIs.

Dcm2bids version 3.1.0 intended for field

AustinBipolar January 22, 2024, 10:57pm 5

Ok thanks very much! We will go with a script to change.

Having trouble getting fMRIprep to see phasdif and magnitude images