Hi all,
I’m in a bit of a bind and not sure how to proceed. I’m trying to convert Phillips scanner data from DICOM to BIDS using heudiconv and its giving me an issue
nibabel.nicom.dicomwrappers.WrapperError: File contains more than one StackID. Cannot handle multi-stack files
Currently heudiconv doesn’t support multi stack IDs.
I’ve also tried using dcm2niix but that creates an issue of FileNotFoundError: [Errno 2] No such file or directory: ‘/fs/ess/PAS2302/Subbi/TURBO/TERBO/data/YT/DICOM/BIDS/tmp_dcm2bids/sub-YT0691035i_ses-1_tmp’
Has anyone manually converted dcm to niix and then renamed the files that way using a config file to rename? Can you share your shell or Python script?
Dicom files do convert to nii.gz so the dcm2niix works. I’m just having trouble putting it into BIDS format.
I’m not sure how to proceed with these scans since converting them to BIDS has been really a hassle for a while.
Thanks.
–Subbi M.