Extract ROIs from fmriprep output epi bold images

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I just wanted to mention two developments regarding this issue:

  1. fMRIPrep now allows you to generate derivatives exactly matching templates other than MNI152NLin2009cAsym. That is using the new --output-spaces argument. For instance: --output-spaces MNI152NLin6Asym:res-2 will give you preprocessed fMRI with the grid of the FSL MNI template (i.e., 2mm isotropic resolution and 91x109x91 matrix size).

  2. TemplateFlow now includes the harvard-oxford template resampled to the default template of fMRIPrep (MNI152NLin2009cAsym).

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