Extract ROIs from fmriprep output epi bold images

@Dmitriy_Desser although I haven’t managed to solve the issue regarding the error https://github.com/mariecpereira/Random/blob/master/tSNR_ROI_cort_mydata.ipynb

Please try to figure out, if you have a valid bids dataset! If so commands like

layout.get_subjects() or layout.get_runs() and layout.get_modalities() should work…

Could you maybe post the output of the command

!tree -L 4 “path_to_your_data”?

as described in the tutorial of Mykael Notter:

https://miykael.github.io/nipype_tutorial/notebooks/basic_data_input_bids.html

Cheers,

Dima