fMRIPrep confounds extracted before or after ICA-AROMA?

Hi, another lab that I’m helping set up fMRIprep is wondering whether confounds in the TSV file are generated before or after ICA-AROMA? I found the notebook here ([J.%20Kent].ipynb), but wanted to confirm.


Hi Saren,

Currently the other confounds are generated “before” ICA-AROMA.


Here’s a post on some potential ways to include other regressors with the ICA-AROMA denoised outputs

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