I am replicating a paper which is using ABIDE data registered to 3mm isotropic MNI152 template space. Unfortunately, there’s no such option on fmriprep and is missing from templateflow. I tried adding a 3mm isotropic MNI152Lin template file (T1W, brain, mask) to ~/.cache/templateflow/tpl-MNI152Lin3m…

This thread may be helpful: [image] Unable to use custom template fMRIPrep 22.1.1 Software Support Just as an example, here I’m mounting my existing MNI152NLin6Asym directory into the Docker image: $ docker run --rm -it \ -v /home/chris/.cache/templateflo…

hey were you able to figure this out and get a 3mm working?

Yes I managed and this is done the way @jsein describes. A better and more inclusive solution is to publish the 3mm template on the templateflow project (which I haven’t done)

Fmriprep MNI152 3mm missing (and issues running)

jsein April 2, 2023, 8:18pm 3

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