Fmriprep Susceptibility distortion correction: None

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Hi @RaySneha , and welcome to neurostars!

The ā€œiā€ in IntendedFor needs to be capitalized.

Best,
Steven

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Dear @Steven ,

I greatly appricited your help, thank you so much for your quick replay even in weekend.

So, when i change the ā€œiā€ in intendorFor to capilatl ā€œIā€, fMRIprep throws bellow error:

Traceback (most recent call last):
  File "/opt/conda/envs/fmriprep/bin/fmriprep", line 8, in <module>
    sys.exit(main())
  File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/cli/run.py", line 43, in main
    parse_args()
  File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/cli/parser.py", line 812, in parse_args
    validate_input_dir(config.environment.exec_env, opts.bids_dir, opts.participant_label)
  File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/utils/bids.py", line 185, in validate_input_dir
    subprocess.check_call(['bids-validator', str(bids_dir), '-c', temp.name])
  File "/opt/conda/envs/fmriprep/lib/python3.10/subprocess.py", line 369, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['bids-validator', '/data/ucsfocd/data/mri/SEEG_subjects/nifti/rawdata', '-c', '/tmp/tmpkpsinw1e.jsonb']' returned non-zero exit status 1.
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Hi @RaySneha,

This sounds like a separate issue that your dataset is not passing BIDS validation. You should open a new issue under Software Support category and fill in all info that is requested by the post template.

Best,
Steven

1 Like
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