Hi Elizabeth, @emdupre @tsalo
Thank you for your reply. You are correct. I was under the impression that I was using your version after running pip install tedana, but somehow got lost in the process and ended up using the AFNI version.
I created a miniconda environment for running the updated tedana (after pip install it says version 0.0.7).
I am now able to run t2smap, but not tedana:
Traceback (most recent call last):
File “/home/bram/.local/bin/tedana”, line 7, in
from tedana.workflows.tedana import _main
File “/home/bram/.local/lib/python2.7/site-packages/tedana/init.py”, line 8, in
from .due import (due, Doi)
File “/home/bram/.local/lib/python2.7/site-packages/tedana/due.py”, line 19, in
from builtins import str
ImportError: No module named builtins
I am guessing that it has something to do with the environment trying to use python 2.7 (which I don’t understand, because it has version 3.7 installed)?
Just to see what happens with the orientation I ran t2smap, and I can gladly say that the orientation was preserved. Really keen on getting the ‘correct’ tedana to run, would you have any advice?