Summary of what happened:
After running XCP-D successfully, there was no FC matrix output (i.e., *pearsoncorrelation* files).
Command used (and if a helper script was used, a link to the helper script or the command generated):
docker run -ti --rm \
-v ${sour_dir}:/input:ro \
-v ${targ_dir}:/output \
-v ${work_dir}:/work \
-v ${FSLICENSE}:/opt/freesurfer/license.txt \
-v ${TFDIR}:/opt/templateflow \
-e TEMPLATEFLOW_HOME=/opt/templateflow \
-u $(id -u):$(id -g) \
pennlinc/xcp_d:26.0.2 \
/input /output participant \
-w /work --nthreads 10 --fs-license-file /opt/freesurfer/license.txt \
--mode none --input-type fmriprep --file-format cifti \
--dummy-scans 5 --despike n -p 27P --smoothing 0 --combine-runs n \
--skip alff reho \
--motion-filter-type none --fd-thresh 0.5 --output-type interpolated \
--lower-bpf 0.01 --upper-bpf 0.1 \
--atlases Glasser --min-coverage 0.5 \
--output-run-wise-correlations y --warp-surfaces-native2std n \
--linc-qc y --abcc-qc n \
--output-layout bids
Version:
26.0.2
Environment (Docker, Singularity / Apptainer, custom installation):
Docker
Data formatted according to a validatable standard? Please provide the output of the validator:
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Relevant log outputs (up to 20 lines):
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Screenshots / relevant information:
In the subject-wise HTML files, no errors reported. Other necessary files were generated including the parcel-wise mean time series.