MRIQC never runs longer than 25s (IndexError: list index out of range)

The same without /usr/bin:
singularity run --cleanenv -B /data/ncl-mb10:/data/ncl-mb10,/data/ncl-mb13:/data/ncl-mb13 $sifloc --participant-label $subj --n_procs 4 --omp-nthreads 4 --mem_gb 16 --no-sub --ica --fft-spikes-detector -vvv -w $workdir $indir $outdir participant

I will mention that I ran the bids-validator and got these errors. It is a little strange since I followed BIDS specification 1.8.0 for naming convention (The Brain Imaging Data Structure (BIDS) Specification | Zenodo):