MRIQC TSNR calculation on multi echo bold data

[jsein]

Hi @yabrham ,

I think this thread should help you:

Using mriqc on multiecho data

Hi! My lab recently acquired some multiecho scans (some with 3 echoes, some with 4) and wants to compare these scans for quality while we prepare to launch a new scanning project (post-COVID-19). I ran the scans through mriqc, and to my surprise, mriqc treated each echo as an individual scan. I may have been mistaken in assuming that it would be able to combine the echoes into a sharper image - but is it possible? Is there some flag or something to indicate to mriqc that there is multiecho dat…