Yes without the brainmask refinement with FreeSurfer and running brainextraction_wf on t1_merge produces better outputs than fMRIPREP and we are looking into how FreeSurfer refinement influences segmentation quality on our data set.
Yes without the brainmask refinement with FreeSurfer and running brainextraction_wf on t1_merge produces better outputs than fMRIPREP and we are looking into how FreeSurfer refinement influences segmentation quality on our data set.
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