WARNING: Not mounting /tmp (already mounted in container)  1: [WARN] The Authors field of dataset_description.json should contain an array of fields - with one author per field. This was triggered based on the presence of only one author field. Please ignore if all contributors are already properly listed. (code: 102 - TOO_FEW_AUTHORS)  Please visit https://neurostars.org/search?q=TOO_FEW_AUTHORS for existing conversations about this issue. Summary: Available Tasks: Available Modalities: 2854 Files, 25.19GB rest T1w 390 - Subjects dwi 1 - Session bold  If you have any questions, please post on https://neurostars.org/tags/bids. Making sure the input data is BIDS compliant (warnings can be ignored in most cases). 190722-16:41:42,960 nipype.workflow IMPORTANT: Running fMRIPREP version 1.4.1rc4: * BIDS dataset path: /CALM_BIDS_New_2. * Participant list: ['001']. * Run identifier: 20190722-164142_26822436-94fe-4394-9b71-8fd9d0238ee8. 190722-16:41:45,64 nipype.workflow IMPORTANT: Creating bold processing workflow for "/CALM_BIDS_New_2/sub-001/func/sub-001_task-rest_bold.nii.gz" (0.03 GB / 270 TRs). Memory resampled/largemem=0.13/0.21 GB. 190722-16:41:45,75 nipype.workflow IMPORTANT: No single-band-reference found for sub-001_task-rest_bold.nii.gz 190722-16:41:46,151 nipype.workflow IMPORTANT: Slice-timing correction will be included. 190722-16:41:46,174 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/CALM_BIDS_New_2/sub-001/func/sub-001_task-rest_bold.nii.gz). 190722-16:41:47,220 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-16:41:51,596 nipype.workflow IMPORTANT: Works derived from this fMRIPrep execution should include the following boilerplate: Results included in this manuscript come from preprocessing performed using *fMRIPrep* 1.4.1rc4 (@fmriprep1; @fmriprep2; RRID:SCR_016216), which is based on *Nipype* 1.2.0 (@nipype1; @nipype2; RRID:SCR_002502). Anatomical data preprocessing : The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU) with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.2.0 [@ants, RRID:SCR_004757], and used as T1w-reference throughout the workflow. The T1w-reference was then skull-stripped with a *Nipype* implementation of the `antsBrainExtraction.sh` workflow (from ANTs), using MNIPediatricAsym as target template. Brain tissue segmentation of cerebrospinal fluid (CSF), white-matter (WM) and gray-matter (GM) was performed on the brain-extracted T1w using `fast` [FSL 5.0.9, RRID:SCR_002823, @fsl_fast]. Brain surfaces were reconstructed using `recon-all` [FreeSurfer 6.0.1, RRID:SCR_001847, @fs_reconall], and the brain mask estimated previously was refined with a custom variation of the method to reconcile ANTs-derived and FreeSurfer-derived segmentations of the cortical gray-matter of Mindboggle [RRID:SCR_002438, @mindboggle]. Volume-based spatial normalization to three standard spaces (MNIPediatricAsym, MNI152NLin6Asym, MNI152NLin2009cAsym) was performed through nonlinear registration with `antsRegistration` (ANTs 2.2.0), using brain-extracted versions of both T1w reference and the T1w template. The following templates were selected for spatial normalization: *MNI's unbiased standard MRI template for pediatric data from the 4.5 to 18.5y age range* [@mnipediatricasym, RRID:SCR_008796; TemplateFlow ID: MNIPediatricAsym], *FSL's MNI ICBM 152 non-linear 6th Generation Asymmetric Average Brain Stereotaxic Registration Model* [@mni152nlin6asym, RRID:SCR_002823; TemplateFlow ID: MNI152NLin6Asym], *ICBM 152 Nonlinear Asymmetrical template version 2009c* [@mni152nlin2009casym, RRID:SCR_008796; TemplateFlow ID: MNI152NLin2009cAsym]. Functional data preprocessing : For each of the 1 BOLD runs found per subject (across all tasks and sessions), the following preprocessing was performed. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. The BOLD reference was then co-registered to the T1w reference using `bbregister` (FreeSurfer) which implements boundary-based registration [@bbr]. Co-registration was configured with nine degrees of freedom to account for distortions remaining in the BOLD reference. Head-motion parameters with respect to the BOLD reference (transformation matrices, and six corresponding rotation and translation parameters) are estimated before any spatiotemporal filtering using `mcflirt` [FSL 5.0.9, @mcflirt]. BOLD runs were slice-time corrected using `3dTshift` from AFNI 20160207 [@afni, RRID:SCR_005927]. The BOLD time-series, were resampled to surfaces on the following spaces: *fsaverage*. The BOLD time-series (including slice-timing correction when applied) were resampled onto their original, native space by applying a single, composite transform to correct for head-motion and susceptibility distortions. These resampled BOLD time-series will be referred to as *preprocessed BOLD in original space*, or just *preprocessed BOLD*. The BOLD time-series were resampled into several standard spaces, correspondingly generating the following *spatially-normalized, preprocessed BOLD runs*: MNIPediatricAsym, MNI152NLin6Asym, MNI152NLin2009cAsym. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. Automatic removal of motion artifacts using independent component analysis [ICA-AROMA, @aroma] was performed on the *preprocessed BOLD on MNI space* time-series after removal of non-steady state volumes and spatial smoothing with an isotropic, Gaussian kernel of 6mm FWHM (full-width half-maximum). Corresponding "non-aggresively" denoised runs were produced after such smoothing. Additionally, the "aggressive" noise-regressors were collected and placed in the corresponding confounds file. Several confounding time-series were calculated based on the *preprocessed BOLD*: framewise displacement (FD), DVARS and three region-wise global signals. FD and DVARS are calculated for each functional run, both using their implementations in *Nipype* [following the definitions by @power_fd_dvars]. The three global signals are extracted within the CSF, the WM, and the whole-brain masks. Additionally, a set of physiological regressors were extracted to allow for component-based noise correction [*CompCor*, @compcor]. Principal components are estimated after high-pass filtering the *preprocessed BOLD* time-series (using a discrete cosine filter with 128s cut-off) for the two *CompCor* variants: temporal (tCompCor) and anatomical (aCompCor). tCompCor components are then calculated from the top 5% variable voxels within a mask covering the subcortical regions. This subcortical mask is obtained by heavily eroding the brain mask, which ensures it does not include cortical GM regions. For aCompCor, components are calculated within the intersection of the aforementioned mask and the union of CSF and WM masks calculated in T1w space, after their projection to the native space of each functional run (using the inverse BOLD-to-T1w transformation). Components are also calculated separately within the WM and CSF masks. For each CompCor decomposition, the *k* components with the largest singular values are retained, such that the retained components' time series are sufficient to explain 50 percent of variance across the nuisance mask (CSF, WM, combined, or temporal). The remaining components are dropped from consideration. The head-motion estimates calculated in the correction step were also placed within the corresponding confounds file. The confound time series derived from head motion estimates and global signals were expanded with the inclusion of temporal derivatives and quadratic terms for each [@confounds_satterthwaite_2013]. Frames that exceeded a threshold of 0.5 mm FD or 0.5 standardised DVARS were annotated as motion outliers. All resamplings can be performed with *a single interpolation step* by composing all the pertinent transformations (i.e. head-motion transform matrices, susceptibility distortion correction when available, and co-registrations to anatomical and output spaces). Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs), configured with Lanczos interpolation to minimize the smoothing effects of other kernels [@lanczos]. Non-gridded (surface) resamplings were performed using `mri_vol2surf` (FreeSurfer). Many internal operations of *fMRIPrep* use *Nilearn* 0.5.2 [@nilearn, RRID:SCR_001362], mostly within the functional processing workflow. For more details of the pipeline, see [the section corresponding to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation"). ### References pandoc-citeproc: reference mnipediatricasym not found 190722-16:41:56,493 nipype.workflow INFO: Generated workflow graph: /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/graph.svg (graph2use=colored, simple_form=True). 190722-16:42:04,255 nipype.workflow INFO: Workflow fmriprep_wf settings: ['check', 'execution', 'logging', 'monitoring'] 190722-16:42:04,628 nipype.workflow INFO: Running in parallel. 190722-16:42:04,655 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-16:42:04,806 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_specs". 190722-16:42:04,813 nipype.workflow INFO: [Node] Running "tpl_specs" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:04,819 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs". 190722-16:42:04,820 nipype.workflow INFO: [Job 0] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs). 190722-16:42:04,951 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_specs". 190722-16:42:04,956 nipype.workflow INFO: [Node] Running "tpl_specs" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:04,962 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs". 190722-16:42:04,962 nipype.workflow INFO: [Job 3] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs). 190722-16:42:05,105 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_specs". 190722-16:42:05,110 nipype.workflow INFO: [Node] Running "tpl_specs" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:05,116 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs". 190722-16:42:05,116 nipype.workflow INFO: [Job 6] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs). 190722-16:42:05,262 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.about" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/about". 190722-16:42:05,268 nipype.workflow INFO: [Node] Running "about" ("fmriprep.interfaces.reports.AboutSummary") 190722-16:42:05,275 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.about". 190722-16:42:05,275 nipype.workflow INFO: [Job 64] Completed (fmriprep_wf.single_subject_001_wf.about). 190722-16:42:05,382 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.fsdir_run_20190722_164142_26822436_94fe_4394_9b71_8fd9d0238ee8" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/fsdir_run_20190722_164142_26822436_94fe_4394_9b71_8fd9d0238ee8". 190722-16:42:05,388 nipype.workflow INFO: [Node] Running "fsdir_run_20190722_164142_26822436_94fe_4394_9b71_8fd9d0238ee8" ("niworkflows.interfaces.bids.BIDSFreeSurferDir") 190722-16:42:05,396 nipype.workflow INFO: [Node] Finished "fmriprep_wf.fsdir_run_20190722_164142_26822436_94fe_4394_9b71_8fd9d0238ee8". 190722-16:42:05,396 nipype.workflow INFO: [Job 127] Completed (fmriprep_wf.fsdir_run_20190722_164142_26822436_94fe_4394_9b71_8fd9d0238ee8). 190722-16:42:05,640 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/raw_sources". 190722-16:42:05,656 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:05,664 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources". 190722-16:42:06,641 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl". 190722-16:42:06,641 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl". 190722-16:42:06,649 nipype.workflow INFO: [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz tpl-MNIPediatricAsym_cohort-1_res-1_T1w_resampled.nii.gz 4 4 4 1 190722-16:42:06,649 nipype.workflow INFO: [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-MNIPediatricAsym_cohort-1_res-1_T1w_maths.nii.gz Laplacian /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz 1.5 1 190722-16:42:06,654 nipype.workflow INFO: [Job 9] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources). 190722-16:42:06,661 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 226.02/226.63, Free processors: 16/20. Currently running: * fmriprep_wf.single_subject_001_wf.bidssrc * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.validate 190722-16:42:06,696 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/validate". 190722-16:42:06,705 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-16:42:06,770 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/msk_select". 190722-16:42:06,776 nipype.workflow INFO: [Node] Running "msk_select" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:06,791 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select". 190722-16:42:06,791 nipype.workflow INFO: [Job 1] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select). 190722-16:42:06,902 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_select". 190722-16:42:06,916 nipype.workflow INFO: [Node] Running "tpl_select" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:06,925 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select". 190722-16:42:06,925 nipype.workflow INFO: [Job 2] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select). 190722-16:42:06,995 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.bidssrc" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/bidssrc". 190722-16:42:07,0 nipype.workflow INFO: [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber") 190722-16:42:07,1 nipype.interface WARNING: No "t2w" images found for sub- 190722-16:42:07,1 nipype.interface WARNING: No "flair" images found for sub- 190722-16:42:07,1 nipype.interface WARNING: No "fmap" images found for sub- 190722-16:42:07,1 nipype.interface WARNING: No "sbref" images found for sub- 190722-16:42:07,1 nipype.interface WARNING: No "roi" images found for sub- 190722-16:42:07,8 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.bidssrc". 190722-16:42:07,62 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/msk_select". 190722-16:42:07,143 nipype.workflow INFO: [Node] Running "msk_select" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:07,202 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select". 190722-16:42:07,202 nipype.workflow INFO: [Job 4] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select). 190722-16:42:07,310 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_select". 190722-16:42:07,383 nipype.workflow INFO: [Node] Running "tpl_select" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:07,397 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select". 190722-16:42:07,397 nipype.workflow INFO: [Job 5] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select). 190722-16:42:07,505 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/msk_select". 190722-16:42:07,608 nipype.workflow INFO: [Node] Running "msk_select" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:07,621 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select". 190722-16:42:07,621 nipype.workflow INFO: [Job 7] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select). 190722-16:42:07,724 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_select". 190722-16:42:07,729 nipype.workflow INFO: [Node] Running "tpl_select" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:07,740 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select". 190722-16:42:07,740 nipype.workflow INFO: [Job 8] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select). 190722-16:42:07,865 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl". 190722-16:42:08,654 nipype.workflow INFO: [Job 63] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl). 190722-16:42:08,657 nipype.workflow INFO: [Job 65] Completed (fmriprep_wf.single_subject_001_wf.bidssrc). 190722-16:42:08,663 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 226.42/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.validate 190722-16:42:08,774 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.ds_report_about" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/ds_report_about". 190722-16:42:08,781 nipype.workflow INFO: [Node] Running "ds_report_about" ("fmriprep.interfaces.DerivativesDataSink") 190722-16:42:08,793 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.ds_report_about". 190722-16:42:08,793 nipype.workflow INFO: [Job 125] Completed (fmriprep_wf.single_subject_001_wf.ds_report_about). 190722-16:42:08,974 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.validate". 190722-16:42:10,359 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions". 190722-16:42:10,363 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.bids_info" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/bids_info". 190722-16:42:10,365 nipype.workflow INFO: [Node] Running "t1_template_dimensions" ("niworkflows.interfaces.images.TemplateDimensions") 190722-16:42:10,368 nipype.workflow INFO: [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo") 190722-16:42:10,449 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions". 190722-16:42:10,656 nipype.workflow INFO: [Job 10] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.validate). 190722-16:42:10,659 nipype.workflow INFO: [Job 66] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions). 190722-16:42:10,666 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 226.23/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.bids_info * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl 190722-16:42:10,782 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_validation" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ds_report_validation". 190722-16:42:10,795 nipype.workflow INFO: [Node] Running "ds_report_validation" ("fmriprep.interfaces.DerivativesDataSink") 190722-16:42:10,805 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_validation". 190722-16:42:10,805 nipype.workflow INFO: [Job 11] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_validation). 190722-16:42:10,951 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.bids_info". 190722-16:42:10,958 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_reports_wf/ds_t1_conform_report". 190722-16:42:10,968 nipype.workflow INFO: [Node] Running "ds_t1_conform_report" ("smriprep.interfaces.DerivativesDataSink") 190722-16:42:10,978 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report". 190722-16:42:10,978 nipype.workflow INFO: [Job 67] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report). 190722-16:42:11,88 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_transforms". 190722-16:42:11,105 nipype.workflow INFO: [Node] Setting-up "_ds_t1_template_transforms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_transforms/mapflow/_ds_t1_template_transforms0". 190722-16:42:11,144 nipype.workflow INFO: [Node] Running "_ds_t1_template_transforms0" ("smriprep.interfaces.DerivativesDataSink") 190722-16:42:11,158 nipype.workflow INFO: [Node] Finished "_ds_t1_template_transforms0". 190722-16:42:11,162 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms". 190722-16:42:11,162 nipype.workflow INFO: [Job 68] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms). 190722-16:42:11,667 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources". 190722-16:42:11,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/t1_name". 190722-16:42:11,673 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:11,674 nipype.workflow INFO: [Node] Running "t1_name" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:11,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources". 190722-16:42:11,686 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.t1_name". 190722-16:42:12,262 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl". 190722-16:42:12,382 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref". 190722-16:42:12,468 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-16:42:12,658 nipype.workflow INFO: [Job 61] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl). 190722-16:42:12,660 nipype.workflow INFO: [Job 126] Completed (fmriprep_wf.single_subject_001_wf.bids_info). 190722-16:42:12,663 nipype.workflow INFO: [Job 69] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources). 190722-16:42:12,665 nipype.workflow INFO: [Job 70] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.t1_name). 190722-16:42:12,671 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 225.43/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_conform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190722-16:42:12,685 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_conform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_template_wf/t1_conform". 190722-16:42:12,693 nipype.workflow INFO: [Node] Setting-up "_t1_conform0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0". 190722-16:42:12,700 nipype.workflow INFO: [Node] Running "_t1_conform0" ("niworkflows.interfaces.images.Conform") 190722-16:42:12,772 nipype.workflow INFO: [Node] Finished "_t1_conform0". 190722-16:42:12,776 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_conform". 190722-16:42:12,781 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.summary" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/summary". 190722-16:42:12,787 nipype.workflow INFO: [Node] Running "summary" ("fmriprep.interfaces.reports.SubjectSummary") 190722-16:42:12,795 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.summary". 190722-16:42:12,795 nipype.workflow INFO: [Job 410] Completed (fmriprep_wf.single_subject_001_wf.summary). 190722-16:42:12,911 nipype.interface INFO: stderr 2019-07-22T16:42:12.910957:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-16:42:12,911 nipype.interface INFO: stderr 2019-07-22T16:42:12.910957:++ Authored by: RW Cox 190722-16:42:12,936 nipype.interface INFO: stderr 2019-07-22T16:42:12.936326:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-16:42:12,936 nipype.interface INFO: stderr 2019-07-22T16:42:12.936326: such as /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-16:42:12,936 nipype.interface INFO: stderr 2019-07-22T16:42:12.936326: or viewing/combining it with volumes of differing obliquity, 190722-16:42:12,936 nipype.interface INFO: stderr 2019-07-22T16:42:12.936326: you should consider running: 190722-16:42:12,936 nipype.interface INFO: stderr 2019-07-22T16:42:12.936326: 3dWarp -deoblique 190722-16:42:12,936 nipype.interface INFO: stderr 2019-07-22T16:42:12.936326: on this and other oblique datasets in the same session. 190722-16:42:12,936 nipype.interface INFO: stderr 2019-07-22T16:42:12.936326: See 3dWarp -help for details. 190722-16:42:12,937 nipype.interface INFO: stderr 2019-07-22T16:42:12.936326:++ Oblique dataset:/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/slice.nii.gz is 29.232424 degrees from plumb. 190722-16:42:12,937 nipype.interface INFO: stderr 2019-07-22T16:42:12.937591:++ Coarse del was 10, replaced with 3 190722-16:42:13,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl". 190722-16:42:13,237 nipype.workflow INFO: [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge") 190722-16:42:13,249 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl". 190722-16:42:14,660 nipype.workflow INFO: [Job 71] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_conform). 190722-16:42:14,662 nipype.workflow INFO: [Job 62] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl). 190722-16:42:14,668 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 225.63/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190722-16:42:14,777 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.ds_report_summary" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/ds_report_summary". 190722-16:42:14,782 nipype.workflow INFO: [Node] Running "ds_report_summary" ("fmriprep.interfaces.DerivativesDataSink") 190722-16:42:14,789 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.ds_report_summary". 190722-16:42:14,789 nipype.workflow INFO: [Job 411] Completed (fmriprep_wf.single_subject_001_wf.ds_report_summary). 190722-16:42:15,168 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.get1st" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_template_wf/get1st". 190722-16:42:15,194 nipype.workflow INFO: [Node] Running "get1st" ("nipype.interfaces.utility.base.Select") 190722-16:42:15,201 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.get1st". 190722-16:42:16,662 nipype.workflow INFO: [Job 72] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.get1st). 190722-16:42:16,668 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 225.63/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190722-16:42:16,777 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_validate". 190722-16:42:16,782 nipype.workflow INFO: [Node] Running "anat_validate" ("niworkflows.interfaces.images.ValidateImage") 190722-16:42:16,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_validate". 190722-16:42:16,797 nipype.workflow INFO: [Job 73] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_validate). 190722-16:42:18,665 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 225.63/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190722-16:42:19,176 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fov_check". 190722-16:42:19,182 nipype.workflow INFO: [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:19,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fov_check". 190722-16:42:20,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/truncate_images". 190722-16:42:20,360 nipype.workflow INFO: [Node] Setting-up "_truncate_images0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0". 190722-16:42:20,366 nipype.workflow INFO: [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths.nii.gz TruncateImageIntensity /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz 0.01 0.999 256 190722-16:42:20,440 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/recon_config". 190722-16:42:20,447 nipype.workflow INFO: [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs") 190722-16:42:20,471 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.recon_config". 190722-16:42:20,665 nipype.workflow INFO: [Job 74] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fov_check). 190722-16:42:20,668 nipype.workflow INFO: [Job 75] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.recon_config). 190722-16:42:20,674 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 225.43/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190722-16:42:21,257 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon1". 190722-16:42:21,264 nipype.workflow INFO: [Node] Running "autorecon1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon1 -i /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz -noskullstrip -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-16:42:22,671 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 220.43/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190722-16:42:24,278 nipype.workflow INFO: [Node] Finished "_truncate_images0". 190722-16:42:24,282 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images". 190722-16:42:24,667 nipype.workflow INFO: [Job 76] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images). 190722-16:42:24,670 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.63/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190722-16:42:25,153 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4". 190722-16:42:25,159 nipype.workflow INFO: [Node] Setting-up "_inu_n40" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40". 190722-16:42:25,166 nipype.workflow INFO: [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-001_T1w_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-001_T1w_maths_corrected.nii.gz --shrink-factor 4 190722-16:42:26,671 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 220.43/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190722-16:42:28,934 nipype.interface INFO: stderr 2019-07-22T16:42:28.934682:++ Max displacement in automask = 0.32 (mm) at sub-brick 18 190722-16:42:28,935 nipype.interface INFO: stderr 2019-07-22T16:42:28.934682:++ Max delta displ in automask = 0.31 (mm) at sub-brick 18 190722-16:42:29,901 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref". 190722-16:42:30,671 nipype.workflow INFO: [Job 12] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref). 190722-16:42:30,674 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 221.43/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:42:30,830 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/calc_dummy_scans". 190722-16:42:30,846 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190722-16:42:30,860 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans". 190722-16:42:30,860 nipype.workflow INFO: [Job 34] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans). 190722-16:42:31,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/mcflirt". 190722-16:42:31,374 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/validate/sub-001_task-rest_bold_valid.nii.gz -out /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/mcflirt/sub-001_task-rest_bold_valid_mcf.nii.gz -reffile /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-16:42:32,674 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 221.33/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:42:33,227 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.slice_timing_correction" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_stc_wf/slice_timing_correction". 190722-16:42:33,296 nipype.workflow INFO: [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command: 3dTshift -ignore 0 -prefix sub-001_task-rest_bold_valid_tshift.nii.gz -tpattern @slice_timing.1D -TR 2s /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_stc_wf/slice_timing_correction/sub-001_task-rest_bold_valid.nii.gz 190722-16:42:34,675 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 221.13/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.slice_timing_correction * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:42:44,152 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.slice_timing_correction". 190722-16:42:44,679 nipype.workflow INFO: [Job 35] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.slice_timing_correction). 190722-16:42:44,683 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 221.33/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:42:45,953 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.copy_xform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_stc_wf/copy_xform". 190722-16:42:45,997 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:42:46,682 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 221.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.copy_xform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:42:48,441 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.copy_xform". 190722-16:42:48,681 nipype.workflow INFO: [Job 36] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.copy_xform). 190722-16:42:48,684 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 221.33/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:42:48,780 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_split" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_split". 190722-16:42:48,794 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_stc_wf/copy_xform/sub-001_task-rest_bold_valid_tshift_xform.nii.gz -t 190722-16:42:50,684 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 221.24/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_split * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:43:00,9 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_split". 190722-16:43:00,689 nipype.workflow INFO: [Job 37] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_split). 190722-16:43:00,693 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 221.33/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:43:15,243 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt". 190722-16:43:16,703 nipype.workflow INFO: [Job 13] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt). 190722-16:43:16,706 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 221.43/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:43:16,800 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/normalize_motion". 190722-16:43:16,806 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-16:43:16,821 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion". 190722-16:43:18,707 nipype.workflow INFO: [Job 14] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion). 190722-16:43:18,712 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 221.43/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:43:18,815 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_motion_headers". 190722-16:43:19,4 nipype.workflow INFO: [Node] Running "add_motion_headers" ("niworkflows.interfaces.utils.AddTSVHeader") 190722-16:43:19,20 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers". 190722-16:43:19,20 nipype.workflow INFO: [Job 15] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers). 190722-16:43:19,168 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/fdisp". 190722-16:43:19,283 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-16:43:19,298 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp". 190722-16:43:20,707 nipype.workflow INFO: [Job 16] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp). 190722-16:43:20,714 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 221.43/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:00,487 nipype.workflow INFO: [Node] Finished "_inu_n40". 190722-16:44:00,494 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4". 190722-16:44:00,741 nipype.workflow INFO: [Job 77] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4). 190722-16:44:00,745 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 221.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:00,927 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/fsl2itk". 190722-16:44:00,933 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/lap_target". 190722-16:44:01,113 nipype.workflow INFO: [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_maths.nii.gz Laplacian /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz 1.5 1 190722-16:44:01,132 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-16:44:02,112 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/res_target". 190722-16:44:02,138 nipype.workflow INFO: [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz sub-001_T1w_maths_corrected_resampled.nii.gz 4 4 4 1 190722-16:44:02,745 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 221.18/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_target * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:04,241 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_target". 190722-16:44:04,745 nipype.workflow INFO: [Job 80] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_target). 190722-16:44:04,751 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 221.38/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:09,713 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target". 190722-16:44:10,750 nipype.workflow INFO: [Job 78] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target). 190722-16:44:10,754 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 221.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:10,919 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/mrg_target". 190722-16:44:10,956 nipype.workflow INFO: [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge") 190722-16:44:10,964 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_target". 190722-16:44:12,753 nipype.workflow INFO: [Job 79] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_target). 190722-16:44:12,760 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 221.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:26,144 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk". 190722-16:44:26,765 nipype.workflow INFO: [Job 17] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk). 190722-16:44:26,772 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 221.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:26,899 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/merge_xforms". 190722-16:44:26,907 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190722-16:44:26,917 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms". 190722-16:44:26,917 nipype.workflow INFO: [Job 18] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms). 190722-16:44:27,17 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:44:27,80 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:44:28,765 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 221.43/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:31,182 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:44:32,767 nipype.workflow INFO: [Job 19] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff). 190722-16:44:32,773 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 221.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:32,896 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:44:32,933 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:44:34,770 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 221.43/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:35,69 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:44:36,771 nipype.workflow INFO: [Job 20] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm). 190722-16:44:36,777 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 221.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:38,94 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:44:38,114 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:44:38,158 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_transform". 190722-16:44:38,176 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-16:44:38,772 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 218.38/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:40,574 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:44:40,772 nipype.workflow INFO: [Job 21] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask). 190722-16:44:40,775 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:40,946 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:44:41,41 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:44:41,198 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:44:42,773 nipype.workflow INFO: [Job 22] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190722-16:44:42,776 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:42,900 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr". 190722-16:44:42,923 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190722-16:44:42,980 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190722-16:44:42,980 nipype.workflow INFO: [Job 23] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190722-16:44:44,776 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:44,974 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:44:44,983 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:44:46,778 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 218.38/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:46,924 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:44:48,777 nipype.workflow INFO: [Job 24] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190722-16:44:48,780 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:48,883 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:44:48,892 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:44:50,780 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 218.38/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:51,202 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:44:52,780 nipype.workflow INFO: [Job 25] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190722-16:44:52,784 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:52,925 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:44:52,997 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:44:54,786 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 218.38/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:55,251 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:44:56,781 nipype.workflow INFO: [Job 26] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190722-16:44:56,784 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:56,996 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:44:57,4 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:44:57,101 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:44:58,783 nipype.workflow INFO: [Job 27] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190722-16:44:58,786 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:44:58,888 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:44:58,896 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:45:00,102 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:45:00,784 nipype.workflow INFO: [Job 28] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190722-16:45:00,787 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:45:00,887 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:45:00,893 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:45:01,12 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:45:02,787 nipype.workflow INFO: [Job 29] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190722-16:45:02,792 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:45:02,963 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:45:02,969 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:45:03,88 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:45:04,789 nipype.workflow INFO: [Job 30] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190722-16:45:04,796 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:45:04,925 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:45:06,294 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:45:06,402 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:45:06,789 nipype.workflow INFO: [Job 31] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190722-16:45:06,792 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:45:06,901 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:45:06,913 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:45:07,126 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:45:08,793 nipype.workflow INFO: [Job 32] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190722-16:45:08,800 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:45:09,5 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:45:10,150 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:45:10,314 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:45:10,794 nipype.workflow INFO: [Job 33] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190722-16:45:10,800 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:00,256 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform". 190722-16:46:00,831 nipype.workflow INFO: [Job 38] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform). 190722-16:46:00,838 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 221.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:01,9 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/init_aff". 190722-16:46:01,55 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -m Mattes[/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-MNIPediatricAsym_cohort-1_res-1_T1w_resampled.nii.gz,/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-001_T1w_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1 190722-16:46:01,169 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/merge". 190722-16:46:01,193 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-16:46:02,832 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 221.05/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.init_aff * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:03,596 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.init_aff". 190722-16:46:04,834 nipype.workflow INFO: [Job 81] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.init_aff). 190722-16:46:04,842 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 221.25/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:06,127 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/norm". 190722-16:46:06,146 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform Affine[ 0.1 ] --metric MI[ /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-MNIPediatricAsym_cohort-1_res-1_T1w_maths.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-001_T1w_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0 190722-16:46:06,835 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 218.25/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:16,962 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge". 190722-16:46:18,839 nipype.workflow INFO: [Job 39] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge). 190722-16:46:18,843 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 218.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:19,0 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-16:46:19,5 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-16:46:20,842 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 218.62/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:22,620 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-16:46:22,841 nipype.workflow INFO: [Job 40] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate). 190722-16:46:22,844 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 218.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:22,991 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-16:46:23,3 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-16:46:23,352 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-16:46:24,842 nipype.workflow INFO: [Job 41] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref). 190722-16:46:24,845 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 218.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:46:24,989 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/calc_dummy_scans". 190722-16:46:25,51 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190722-16:46:25,57 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans". 190722-16:46:25,57 nipype.workflow INFO: [Job 60] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans). 190722-16:46:26,845 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 218.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190722-16:48:08,332 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1". 190722-16:48:08,912 nipype.workflow INFO: [Job 128] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1). 190722-16:48:08,915 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 223.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:09,34 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:48:09,41 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:48:09,97 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm". 190722-16:48:09,104 nipype.workflow INFO: [Node] Running "fsnative_2_t1_xfm" ("niworkflows.interfaces.freesurfer.PatchedRobustRegister"), a CommandLine Interface with command: mri_robust_register --satit --iscale --lta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --mov /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/T1.mgz --dst /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz 190722-16:48:10,915 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 223.23/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:22,618 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:48:22,920 nipype.workflow INFO: [Job 42] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff). 190722-16:48:22,923 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:24,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:48:24,155 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:48:24,924 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 223.23/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:28,675 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:48:28,924 nipype.workflow INFO: [Job 43] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm). 190722-16:48:28,927 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:29,77 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:48:29,83 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:48:30,927 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 223.23/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:31,158 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:48:32,926 nipype.workflow INFO: [Job 44] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask). 190722-16:48:32,929 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:33,54 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:48:33,60 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:48:33,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:48:34,927 nipype.workflow INFO: [Job 45] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190722-16:48:34,930 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:35,48 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr". 190722-16:48:35,52 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190722-16:48:35,77 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190722-16:48:35,78 nipype.workflow INFO: [Job 46] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190722-16:48:36,929 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:37,93 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:48:37,98 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:48:38,931 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 223.23/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:39,43 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:48:40,930 nipype.workflow INFO: [Job 47] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190722-16:48:40,933 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:41,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:48:41,110 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:48:42,778 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:48:42,931 nipype.workflow INFO: [Job 48] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190722-16:48:42,934 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:43,30 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:48:43,36 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:48:43,535 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:48:44,932 nipype.workflow INFO: [Job 49] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190722-16:48:44,935 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:45,110 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:48:45,115 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:48:45,279 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:48:46,933 nipype.workflow INFO: [Job 50] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190722-16:48:46,936 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:47,80 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:48:47,87 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:48:48,330 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:48:48,934 nipype.workflow INFO: [Job 51] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190722-16:48:48,937 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:49,36 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:48:49,41 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:48:49,77 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:48:50,935 nipype.workflow INFO: [Job 52] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190722-16:48:50,938 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:51,105 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:48:51,112 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:48:51,398 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:48:52,936 nipype.workflow INFO: [Job 53] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190722-16:48:52,939 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:54,110 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:48:54,114 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:48:54,188 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:48:54,937 nipype.workflow INFO: [Job 54] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190722-16:48:54,940 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:55,107 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:48:55,113 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:48:55,266 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:48:56,938 nipype.workflow INFO: [Job 55] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190722-16:48:56,941 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 223.43/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:48:57,101 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/dvars". 190722-16:48:57,103 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:48:57,107 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-16:48:57,110 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:48:57,365 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:48:58,942 nipype.workflow INFO: [Job 59] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190722-16:48:58,949 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 223.21/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:49:00,104 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm". 190722-16:49:00,941 nipype.workflow INFO: [Job 129] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm). 190722-16:49:00,944 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.41/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:49:01,146 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm". 190722-16:49:01,178 nipype.workflow INFO: [Node] Running "t1_2_fsnative_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --invert --outlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta 190722-16:49:01,279 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm". 190722-16:49:02,942 nipype.workflow INFO: [Job 130] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm). 190722-16:49:02,945 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.41/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:49:03,255 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk". 190722-16:49:03,273 nipype.workflow INFO: [Node] Running "lta_2_itk" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta --outitk /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk/out.txt 190722-16:49:03,535 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk". 190722-16:49:04,943 nipype.workflow INFO: [Job 131] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk). 190722-16:49:04,946 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 223.41/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:49:05,68 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsnative" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_fsnative". 190722-16:49:05,73 nipype.workflow INFO: [Node] Running "ds_t1_fsnative" ("smriprep.interfaces.DerivativesDataSink") 190722-16:49:05,79 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsnative". 190722-16:49:05,80 nipype.workflow INFO: [Job 132] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsnative). 190722-16:49:06,946 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 223.41/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:49:11,533 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars". 190722-16:49:12,947 nipype.workflow INFO: [Job 56] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars). 190722-16:49:12,951 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 223.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-16:49:13,87 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_std_dvars_header". 190722-16:49:13,92 nipype.workflow INFO: [Node] Running "add_std_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader") 190722-16:49:13,100 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header". 190722-16:49:13,100 nipype.workflow INFO: [Job 57] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header). 190722-16:49:13,253 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_dvars_header". 190722-16:49:13,258 nipype.workflow INFO: [Node] Running "add_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader") 190722-16:49:13,266 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header". 190722-16:49:13,266 nipype.workflow INFO: [Job 58] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header). 190722-16:49:14,950 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 223.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190722-17:07:18,863 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm". 190722-17:07:19,708 nipype.workflow INFO: [Job 82] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm). 190722-17:07:19,713 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:07:20,892 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask". 190722-17:07:20,899 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask.nii.gz --interpolation Gaussian --output tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans.nii.gz --reference-image /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz --transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ] 190722-17:07:21,714 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 225.63/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask 190722-17:07:40,318 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask". 190722-17:07:41,730 nipype.workflow INFO: [Job 83] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask). 190722-17:07:41,737 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:07:41,838 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask". 190722-17:07:41,846 nipype.workflow INFO: [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command: ThresholdImage 3 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans.nii.gz tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000 190722-17:07:42,658 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask". 190722-17:07:43,732 nipype.workflow INFO: [Job 84] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask). 190722-17:07:43,739 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:07:43,850 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask". 190722-17:07:43,852 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask". 190722-17:07:43,860 nipype.workflow INFO: [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled.nii.gz 10 190722-17:07:43,861 nipype.workflow INFO: [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths.nii.gz MD /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled.nii.gz 2 190722-17:07:44,943 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask". 190722-17:07:45,402 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask". 190722-17:07:45,735 nipype.workflow INFO: [Job 85] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask). 190722-17:07:45,737 nipype.workflow INFO: [Job 86] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask). 190722-17:07:45,743 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:07:45,867 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask". 190722-17:07:45,875 nipype.workflow INFO: [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths_maths.nii.gz GetLargestComponent /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths.nii.gz 190722-17:07:47,303 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask". 190722-17:07:47,737 nipype.workflow INFO: [Job 87] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask). 190722-17:07:47,744 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:07:47,879 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos". 190722-17:07:47,906 nipype.workflow INFO: [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command: Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-001_T1w_maths_corrected_labeled.nii.gz] --use-random-seed 1 190722-17:07:49,743 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 223.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos 190722-17:08:43,7 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos". 190722-17:08:43,789 nipype.workflow INFO: [Job 88] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos). 190722-17:08:43,795 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:08:45,89 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm". 190722-17:08:45,99 nipype.workflow INFO: [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-001_T1w_maths_corrected_labeled.nii.gz 10 190722-17:08:45,796 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm 190722-17:08:46,385 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm". 190722-17:08:47,794 nipype.workflow INFO: [Job 89] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm). 190722-17:08:47,800 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:08:47,911 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels". 190722-17:08:47,918 nipype.workflow INFO: [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function") 190722-17:08:48,379 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels". 190722-17:08:49,795 nipype.workflow INFO: [Job 90] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels). 190722-17:08:49,800 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:08:49,908 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm". 190722-17:08:49,914 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf". 190722-17:08:49,916 nipype.workflow INFO: [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-001_T1w_maths_corrected_labeled_maths_class-02.nii.gz 190722-17:08:49,917 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm". 190722-17:08:49,922 nipype.workflow INFO: [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-001_T1w_maths_corrected_labeled_maths_class-01.nii.gz -10 190722-17:08:49,923 nipype.workflow INFO: [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-001_T1w_maths_corrected_labeled_maths_class-03.nii.gz 190722-17:08:50,952 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf". 190722-17:08:50,959 nipype.workflow INFO: [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-001_T1w_maths_corrected_labeled_maths_class-01.nii.gz 10 190722-17:08:51,2 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf". 190722-17:08:51,546 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm". 190722-17:08:51,628 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm". 190722-17:08:51,798 nipype.workflow INFO: [Job 91] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf). 190722-17:08:51,800 nipype.workflow INFO: [Job 93] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm). 190722-17:08:51,803 nipype.workflow INFO: [Job 99] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm). 190722-17:08:51,809 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf 190722-17:08:51,913 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm". 190722-17:08:51,920 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm". 190722-17:08:51,921 nipype.workflow INFO: [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-001_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz 190722-17:08:51,929 nipype.workflow INFO: [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-001_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz 2 190722-17:08:53,155 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm". 190722-17:08:53,800 nipype.workflow INFO: [Job 100] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm). 190722-17:08:53,806 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 226.23/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf 190722-17:08:53,910 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm". 190722-17:08:53,961 nipype.workflow INFO: [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10 190722-17:08:54,995 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm". 190722-17:08:55,721 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf". 190722-17:08:55,801 nipype.workflow INFO: [Job 92] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf). 190722-17:08:55,803 nipype.workflow INFO: [Job 101] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm). 190722-17:08:55,808 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm 190722-17:09:01,491 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm". 190722-17:09:01,808 nipype.workflow INFO: [Job 94] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm). 190722-17:09:01,814 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:01,922 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm". 190722-17:09:01,928 nipype.workflow INFO: [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-001_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-001_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz 190722-17:09:03,404 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm". 190722-17:09:03,810 nipype.workflow INFO: [Job 95] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm). 190722-17:09:03,817 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:03,951 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm". 190722-17:09:03,962 nipype.workflow INFO: [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 08_mult_gm_maths.nii.gz addtozero /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-001_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz 190722-17:09:05,814 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm 190722-17:09:08,325 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm". 190722-17:09:09,816 nipype.workflow INFO: [Job 96] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm). 190722-17:09:09,823 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:09,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm". 190722-17:09:09,943 nipype.workflow INFO: [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz 190722-17:09:11,157 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm". 190722-17:09:11,818 nipype.workflow INFO: [Job 97] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm). 190722-17:09:11,825 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:11,937 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm". 190722-17:09:11,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm". 190722-17:09:11,960 nipype.workflow INFO: [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10 190722-17:09:11,968 nipype.workflow INFO: [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz 190722-17:09:13,116 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm". 190722-17:09:13,819 nipype.workflow INFO: [Job 98] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm). 190722-17:09:13,824 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm 190722-17:09:13,921 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms". 190722-17:09:13,929 nipype.workflow INFO: [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge") 190722-17:09:13,939 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms". 190722-17:09:15,822 nipype.workflow INFO: [Job 102] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms). 190722-17:09:15,828 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm 190722-17:09:16,533 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm". 190722-17:09:17,824 nipype.workflow INFO: [Job 103] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm). 190722-17:09:17,830 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:17,935 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm". 190722-17:09:17,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2". 190722-17:09:17,944 nipype.workflow INFO: [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function") 190722-17:09:17,944 nipype.workflow INFO: [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10 190722-17:09:18,345 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2". 190722-17:09:19,247 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm". 190722-17:09:19,826 nipype.workflow INFO: [Job 104] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm). 190722-17:09:19,828 nipype.workflow INFO: [Job 105] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2). 190722-17:09:19,833 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:19,937 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7". 190722-17:09:19,945 nipype.workflow INFO: [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz 190722-17:09:21,832 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7 190722-17:09:24,11 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7". 190722-17:09:25,832 nipype.workflow INFO: [Job 106] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7). 190722-17:09:25,838 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:25,945 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7". 190722-17:09:25,952 nipype.workflow INFO: [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2 190722-17:09:27,838 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7 190722-17:09:29,179 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7". 190722-17:09:29,836 nipype.workflow INFO: [Job 107] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7). 190722-17:09:29,842 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:29,954 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7". 190722-17:09:29,962 nipype.workflow INFO: [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz 190722-17:09:31,757 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7". 190722-17:09:31,837 nipype.workflow INFO: [Job 108] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7). 190722-17:09:31,843 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:31,944 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7". 190722-17:09:31,952 nipype.workflow INFO: [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4 190722-17:09:33,840 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7 190722-17:09:34,103 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7". 190722-17:09:35,841 nipype.workflow INFO: [Job 109] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7). 190722-17:09:35,847 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:35,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7". 190722-17:09:35,964 nipype.workflow INFO: [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2 190722-17:09:37,847 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7 190722-17:09:44,627 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7". 190722-17:09:45,851 nipype.workflow INFO: [Job 110] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7). 190722-17:09:45,857 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:45,960 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2". 190722-17:09:45,968 nipype.workflow INFO: [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths.nii.gz 190722-17:09:47,856 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2 190722-17:09:50,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2". 190722-17:09:51,857 nipype.workflow INFO: [Job 111] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2). 190722-17:09:51,863 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:51,968 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2". 190722-17:09:51,976 nipype.workflow INFO: [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5 190722-17:09:53,863 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2 190722-17:09:54,255 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2". 190722-17:09:55,861 nipype.workflow INFO: [Job 112] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2). 190722-17:09:55,867 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:56,11 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2". 190722-17:09:56,19 nipype.workflow INFO: [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5 190722-17:09:57,863 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2 190722-17:09:59,570 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2". 190722-17:09:59,865 nipype.workflow INFO: [Job 113] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2). 190722-17:09:59,871 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:09:59,979 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask". 190722-17:09:59,987 nipype.workflow INFO: [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10 190722-17:10:01,328 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask". 190722-17:10:01,867 nipype.workflow INFO: [Job 114] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask). 190722-17:10:01,873 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:10:01,973 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform". 190722-17:10:01,979 nipype.workflow INFO: [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function") 190722-17:10:02,358 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform". 190722-17:10:03,869 nipype.workflow INFO: [Job 115] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform). 190722-17:10:03,876 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:10:03,984 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform". 190722-17:10:03,989 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:10:05,635 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform". 190722-17:10:05,635 nipype.workflow INFO: [Job 116] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform). 190722-17:10:05,873 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:10:05,989 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.sel_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/sel_wm". 190722-17:10:06,25 nipype.workflow INFO: [Node] Running "sel_wm" ("nipype.interfaces.utility.base.Select") 190722-17:10:06,33 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.sel_wm". 190722-17:10:06,34 nipype.workflow INFO: [Job 117] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.sel_wm). 190722-17:10:07,875 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:10:07,982 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final". 190722-17:10:07,992 nipype.workflow INFO: [Node] Setting-up "_inu_n4_final0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0". 190722-17:10:07,999 nipype.workflow INFO: [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-001_T1w_corrected.nii.gz, sub-001_T1w_bias.nii.gz ] --shrink-factor 4 --weight-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz 190722-17:10:09,875 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final 190722-17:10:50,536 nipype.workflow INFO: [Node] Finished "_inu_n4_final0". 190722-17:10:50,542 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final". 190722-17:10:51,911 nipype.workflow INFO: [Job 118] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final). 190722-17:10:51,915 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:10:52,11 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/apply_mask". 190722-17:10:52,18 nipype.workflow INFO: [Node] Setting-up "_apply_mask0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0". 190722-17:10:52,25 nipype.workflow INFO: [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-001_T1w_corrected.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-001_T1w_corrected_masked.nii.gz 190722-17:10:53,813 nipype.workflow INFO: [Node] Finished "_apply_mask0". 190722-17:10:53,816 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.apply_mask". 190722-17:10:53,915 nipype.workflow INFO: [Job 119] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.apply_mask). 190722-17:10:53,921 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:10:54,23 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.copy_xform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform". 190722-17:10:54,28 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:10:59,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.copy_xform". 190722-17:10:59,666 nipype.workflow INFO: [Job 120] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.copy_xform). 190722-17:10:59,780 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:10:59,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/trunc_mov". 190722-17:10:59,870 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/trunc_mov". 190722-17:10:59,871 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_preproc". 190722-17:10:59,875 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz 0.01 0.999 256 190722-17:10:59,881 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz 0.01 0.999 256 190722-17:10:59,881 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/trunc_mov". 190722-17:10:59,889 nipype.workflow INFO: [Node] Running "ds_t1_preproc" ("smriprep.interfaces.DerivativesDataSink") 190722-17:10:59,889 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz 0.01 0.999 256 190722-17:11:03,114 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190722-17:11:03,202 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190722-17:11:03,209 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190722-17:11:11,18 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc". 190722-17:11:11,18 nipype.workflow INFO: [Job 124] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc). 190722-17:11:11,143 nipype.workflow INFO: [Job 121] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov). 190722-17:11:11,144 nipype.workflow INFO: [Job 122] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov). 190722-17:11:11,146 nipype.workflow INFO: [Job 123] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov). 190722-17:11:11,149 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern 190722-17:11:11,262 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern". 190722-17:11:11,267 nipype.workflow INFO: [Node] Running "skull_strip_extern" ("niworkflows.interfaces.freesurfer.FSInjectBrainExtracted") 190722-17:11:12,718 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern". 190722-17:11:13,147 nipype.workflow INFO: [Job 133] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern). 190722-17:11:13,153 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-17:11:13,259 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol". 190722-17:11:13,269 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-17:11:13,270 nipype.workflow INFO: [Node] Running "autorecon2_vol" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon2-volonly -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-17:11:13,273 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-17:11:15,149 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 221.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol 190722-19:47:17,885 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol". 190722-19:47:18,355 nipype.workflow INFO: [Job 134] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol). 190722-19:47:18,362 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-19:47:20,362 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-19:47:20,467 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190722-19:47:20,469 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190722-19:47:20,478 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-19:47:20,479 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-19:47:20,480 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-19:47:20,481 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-19:47:20,482 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-19:47:20,484 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-19:47:22,364 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 216.63/226.63, Free processors: 4/20. Currently running: * _autorecon_surfs1 * _autorecon_surfs0 190722-21:38:59,138 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190722-21:38:59,512 nipype.workflow INFO: [Job 412] Completed (_autorecon_surfs0). 190722-21:38:59,514 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 221.63/226.63, Free processors: 12/20. Currently running: * _autorecon_surfs1 190722-21:45:49,728 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190722-21:45:49,921 nipype.workflow INFO: [Job 413] Completed (_autorecon_surfs1). 190722-21:45:49,926 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-21:45:50,41 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs". 190722-21:45:50,55 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190722-21:45:50,70 nipype.interface INFO: recon-all complete : Not running 190722-21:45:50,71 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-21:45:50,74 nipype.interface INFO: recon-all complete : Not running 190722-21:45:50,172 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190722-21:45:50,175 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190722-21:45:50,185 nipype.interface INFO: recon-all complete : Not running 190722-21:45:50,186 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-21:45:50,187 nipype.interface INFO: recon-all complete : Not running 190722-21:45:50,272 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190722-21:45:50,277 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs". 190722-21:45:51,923 nipype.workflow INFO: [Job 135] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs). 190722-21:45:51,929 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-21:45:53,929 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-21:45:54,40 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190722-21:45:54,43 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190722-21:45:54,54 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-21:45:54,54 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-21:45:54,55 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-21:45:54,55 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-21:45:54,58 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-21:45:54,59 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-21:45:55,926 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 216.63/226.63, Free processors: 4/20. Currently running: * _autorecon31 * _autorecon30 190722-22:17:08,695 nipype.workflow INFO: [Node] Finished "_autorecon30". 190722-22:17:09,737 nipype.workflow INFO: [Job 414] Completed (_autorecon30). 190722-22:17:09,742 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 221.63/226.63, Free processors: 12/20. Currently running: * _autorecon31 190722-22:17:11,616 nipype.workflow INFO: [Node] Finished "_autorecon31". 190722-22:17:11,739 nipype.workflow INFO: [Job 415] Completed (_autorecon31). 190722-22:17:11,744 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-22:17:11,862 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3". 190722-22:17:11,874 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190722-22:17:11,887 nipype.interface INFO: recon-all complete : Not running 190722-22:17:11,888 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-22:17:11,891 nipype.interface INFO: recon-all complete : Not running 190722-22:17:11,984 nipype.workflow INFO: [Node] Finished "_autorecon30". 190722-22:17:11,987 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190722-22:17:11,996 nipype.interface INFO: recon-all complete : Not running 190722-22:17:11,997 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-22:17:11,999 nipype.interface INFO: recon-all complete : Not running 190722-22:17:12,81 nipype.workflow INFO: [Node] Finished "_autorecon31". 190722-22:17:12,86 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3". 190722-22:17:13,741 nipype.workflow INFO: [Job 136] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3). 190722-22:17:13,747 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190722-22:17:13,865 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.targets" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/targets". 190722-22:17:13,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/fs_datasource". 190722-22:17:13,875 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:17:13,877 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/fs_datasource". 190722-22:17:13,880 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/get_surfaces". 190722-22:17:13,882 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190722-22:17:13,883 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:17:13,884 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190722-22:17:13,885 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/recon_report". 190722-22:17:13,887 nipype.workflow INFO: [Node] Running "get_surfaces" ("nipype.interfaces.io.FreeSurferSource") 190722-22:17:13,892 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:17:13,896 nipype.interface INFO: recon-all complete : Not running 190722-22:17:13,897 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.targets". 190722-22:17:13,897 nipype.workflow INFO: [Node] Running "recon_report" ("niworkflows.interfaces.segmentation.ReconAllRPT"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-22:17:13,904 nipype.interface INFO: recon-all complete : Not running 190722-22:17:13,911 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource". 190722-22:17:13,917 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource". 190722-22:17:13,917 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces". 190722-22:17:13,966 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-22:17:13,975 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-001 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer 190722-22:17:15,743 nipype.workflow INFO: [Job 137] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.targets). 190722-22:17:15,746 nipype.workflow INFO: [Job 150] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource). 190722-22:17:15,748 nipype.workflow INFO: [Job 154] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource). 190722-22:17:15,750 nipype.workflow INFO: [Job 400] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces). 190722-22:17:15,756 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 216.63/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190722-22:17:15,870 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative". 190722-22:17:15,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative". 190722-22:17:15,880 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/aseg.mgz --seg /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg.mgz --temp /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/rawavg.mgz --o /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz 190722-22:17:15,884 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/aseg.mgz --seg /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg.mgz --temp /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/rawavg.mgz --o /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz 190722-22:17:17,748 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 216.23/226.63, Free processors: 9/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190722-22:17:17,862 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190722-22:17:17,871 nipype.workflow INFO: [Node] Running "_midthickness1" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.pial -thickness -thickness_name /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.thickness /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.smoothwm 0.5 midthickness 190722-22:17:17,958 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190722-22:17:17,968 nipype.workflow INFO: [Node] Running "_midthickness0" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.pial -thickness -thickness_name /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.thickness /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.smoothwm 0.5 midthickness 190722-22:17:19,750 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 0 jobs ready. Free memory (GB): 215.83/226.63, Free processors: 7/20. Currently running: * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190722-22:17:22,382 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report". 190722-22:17:22,615 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative". 190722-22:17:22,909 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative". 190722-22:17:23,749 nipype.workflow INFO: [Job 408] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report). 190722-22:17:23,751 nipype.workflow INFO: [Job 151] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative). 190722-22:17:23,753 nipype.workflow INFO: [Job 155] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative). 190722-22:17:23,758 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 221.23/226.63, Free processors: 10/20. Currently running: * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190722-22:17:23,870 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii". 190722-22:17:23,873 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii". 190722-22:17:23,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_reports_wf/ds_recon_report". 190722-22:17:23,877 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --input_volume /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz --output_volume /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz 190722-22:17:23,880 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --input_volume /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz --output_volume /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz 190722-22:17:23,880 nipype.workflow INFO: [Node] Running "ds_recon_report" ("smriprep.interfaces.DerivativesDataSink") 190722-22:17:23,888 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report". 190722-22:17:23,888 nipype.workflow INFO: [Job 409] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report). 190722-22:17:25,286 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii". 190722-22:17:25,306 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii". 190722-22:17:25,749 nipype.workflow INFO: [Job 152] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii). 190722-22:17:25,751 nipype.workflow INFO: [Job 156] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii). 190722-22:17:25,755 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 221.23/226.63, Free processors: 10/20. Currently running: * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190722-22:17:25,860 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsparc" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_fsparc". 190722-22:17:25,865 nipype.workflow INFO: [Node] Running "ds_t1_fsparc" ("smriprep.interfaces.DerivativesDataSink") 190722-22:17:27,926 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsparc". 190722-22:17:27,926 nipype.workflow INFO: [Job 153] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsparc). 190722-22:17:28,50 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsaseg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_fsaseg". 190722-22:17:28,55 nipype.workflow INFO: [Node] Running "ds_t1_fsaseg" ("smriprep.interfaces.DerivativesDataSink") 190722-22:17:30,249 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsaseg". 190722-22:17:30,250 nipype.workflow INFO: [Job 157] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsaseg). 190722-22:17:30,388 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine". 190722-22:17:30,389 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 221.03/226.63, Free processors: 9/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190722-22:17:30,394 nipype.workflow INFO: [Node] Running "refine" ("niworkflows.interfaces.freesurfer.RefineBrainMask") 190722-22:17:45,223 nipype.interface INFO: stdout 2019-07-22T22:17:45.223025: 190722-22:17:45,223 nipype.interface INFO: stdout 2019-07-22T22:17:45.223025:Matrix from LTA: 190722-22:17:45,223 nipype.interface INFO: stdout 2019-07-22T22:17:45.223025: 0.99879 0.03561 0.03401 0.71870; 190722-22:17:45,223 nipype.interface INFO: stdout 2019-07-22T22:17:45.223025:-0.01254 -0.48406 0.87494 -27.99255; 190722-22:17:45,223 nipype.interface INFO: stdout 2019-07-22T22:17:45.223025: 0.04762 -0.87431 -0.48303 -22.00797; 190722-22:17:45,223 nipype.interface INFO: stdout 2019-07-22T22:17:45.223025: 0.00000 0.00000 0.00000 1.00000; 190722-22:17:45,382 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 190722-22:17:45,382 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/brainmask.mgz 190722-22:17:45,382 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:movvol /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-22:17:45,382 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:targvol /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/brainmask.mgz 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:outvol /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:regfile /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:invert 0 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:tal 0 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:talres 2 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:regheader 0 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:noresample 0 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:interp nearest (0) 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:precision float (3) 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:Gdiag_no -1 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:Synth 0 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:SynthSeed 1564135764 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:Final tkRAS-to-tkRAS Matrix is: 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 0.99879 0.03561 0.03401 0.71868; 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:-0.01254 -0.48406 0.87494 -27.99252; 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 0.04762 -0.87431 -0.48303 -22.00797; 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 0.00000 0.00000 0.00000 1.00000; 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631:Vox2Vox Matrix is: 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 0.33293 0.01134 -0.01187 -10.78622; 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 0.01587 -0.16101 0.29144 20.60935; 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 0.00334 -0.23332 -0.12908 54.49480; 190722-22:17:45,383 nipype.interface INFO: stdout 2019-07-22T22:17:45.382631: 0.00000 0.00000 0.00000 1.00000; 190722-22:17:46,253 nipype.interface INFO: stdout 2019-07-22T22:17:46.253427: 190722-22:17:46,253 nipype.interface INFO: stdout 2019-07-22T22:17:46.253427:Resampling 190722-22:17:46,253 nipype.interface INFO: stdout 2019-07-22T22:17:46.253427:Output registration matrix is identity 190722-22:17:46,253 nipype.interface INFO: stdout 2019-07-22T22:17:46.253427: 190722-22:17:46,253 nipype.interface INFO: stdout 2019-07-22T22:17:46.253427:mri_vol2vol done 190722-22:18:04,12 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-22:18:04,420 nipype.workflow INFO: [Job 138] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg). 190722-22:18:04,426 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 226.03/226.63, Free processors: 17/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine * _midthickness1 * _midthickness0 190722-22:18:04,643 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-22:18:04,654 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.lta --reg /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.dat --o /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-001 190722-22:18:06,423 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 214.03/226.63, Free processors: 16/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine * _midthickness1 * _midthickness0 190722-22:18:18,330 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine". 190722-22:18:18,432 nipype.workflow INFO: [Job 158] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine). 190722-22:18:18,435 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 5 jobs ready. Free memory (GB): 214.23/226.63, Free processors: 17/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:18:18,539 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration". 190722-22:18:18,545 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190722-22:18:18,545 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration". 190722-22:18:18,547 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_mask". 190722-22:18:18,552 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190722-22:18:18,555 nipype.workflow INFO: [Node] Running "ds_t1_mask" ("smriprep.interfaces.DerivativesDataSink") 190722-22:18:19,106 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask". 190722-22:18:19,106 nipype.workflow INFO: [Job 189] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask). 190722-22:18:19,209 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.applyrefined" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/applyrefined". 190722-22:18:19,216 nipype.workflow INFO: [Node] Running "applyrefined" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine/sub-001_T1w_corrected_xform_rbrainmask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/applyrefined/sub-001_T1w_corrected_xform_masked.nii.gz 190722-22:18:20,438 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 1 jobs ready. Free memory (GB): 210.03/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.applyrefined * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:18:20,615 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.applyrefined". 190722-22:18:22,436 nipype.workflow INFO: [Job 190] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.applyrefined). 190722-22:18:22,442 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 210.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:18:22,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/gen_ref". 190722-22:18:22,562 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:18:23,368 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.gen_ref". 190722-22:18:24,436 nipype.workflow INFO: [Job 191] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.gen_ref). 190722-22:18:24,439 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 210.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:18:24,540 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:18:24,546 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-001_T1w_corrected_xform_masked_reference.nii.gz -t identity 190722-22:18:26,438 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 210.13/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:18:26,876 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:18:28,439 nipype.workflow INFO: [Job 192] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm). 190722-22:18:28,442 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 210.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:18:28,543 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_t1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_aparc_t1". 190722-22:18:28,551 nipype.workflow INFO: [Node] Running "ds_bold_aparc_t1" ("fmriprep.interfaces.DerivativesDataSink") 190722-22:18:28,647 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_t1". 190722-22:18:28,648 nipype.workflow INFO: [Job 193] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_t1). 190722-22:18:28,775 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:18:28,781 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-001_T1w_corrected_xform_masked_reference.nii.gz -t identity 190722-22:18:30,442 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 210.13/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:18:31,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:18:32,442 nipype.workflow INFO: [Job 194] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm). 190722-22:18:32,445 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 210.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:18:32,599 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_t1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_aseg_t1". 190722-22:18:32,617 nipype.workflow INFO: [Node] Running "ds_bold_aseg_t1" ("fmriprep.interfaces.DerivativesDataSink") 190722-22:18:32,753 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_t1". 190722-22:18:32,753 nipype.workflow INFO: [Job 195] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_t1). 190722-22:18:32,896 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg". 190722-22:18:32,902 nipype.workflow INFO: [Node] Running "t1_seg" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command: fast -N -p -g -S 1 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked.nii.gz 190722-22:18:34,445 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 1 jobs ready. Free memory (GB): 207.23/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190722-22:19:09,917 nipype.interface INFO: stdout 2019-07-22T22:19:09.917246: 190722-22:19:09,917 nipype.interface INFO: stdout 2019-07-22T22:19:09.917246:Matrix from LTA: 190722-22:19:09,917 nipype.interface INFO: stdout 2019-07-22T22:19:09.917246: 0.99861 0.03357 0.04055 0.56615; 190722-22:19:09,917 nipype.interface INFO: stdout 2019-07-22T22:19:09.917246:-0.01841 -0.49888 0.86648 -29.28220; 190722-22:19:09,917 nipype.interface INFO: stdout 2019-07-22T22:19:09.917246: 0.04932 -0.86602 -0.49757 -20.44204; 190722-22:19:09,917 nipype.interface INFO: stdout 2019-07-22T22:19:09.917246: 0.00000 0.00000 0.00000 1.00000; 190722-22:19:10,164 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768: 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/brainmask.mgz 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:movvol /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:targvol /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/mri/brainmask.mgz 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:outvol /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:regfile /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.lta 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:invert 0 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:tal 0 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:talres 2 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:regheader 0 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:noresample 0 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:interp nearest (0) 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:precision float (3) 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:Gdiag_no -1 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:Synth 0 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:SynthSeed 1563894967 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768: 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:Final tkRAS-to-tkRAS Matrix is: 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768: 0.99861 0.03357 0.04055 0.56615; 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768:-0.01841 -0.49888 0.86648 -29.28220; 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768: 0.04932 -0.86602 -0.49757 -20.44202; 190722-22:19:10,165 nipype.interface INFO: stdout 2019-07-22T22:19:10.164768: 0.00000 0.00000 0.00000 1.00000; 190722-22:19:10,176 nipype.interface INFO: stdout 2019-07-22T22:19:10.176090: 190722-22:19:10,176 nipype.interface INFO: stdout 2019-07-22T22:19:10.176090: 190722-22:19:10,176 nipype.interface INFO: stdout 2019-07-22T22:19:10.176090:Vox2Vox Matrix is: 190722-22:19:10,176 nipype.interface INFO: stdout 2019-07-22T22:19:10.176090: 0.33287 0.01352 -0.01119 -11.09387; 190722-22:19:10,176 nipype.interface INFO: stdout 2019-07-22T22:19:10.176090: 0.01644 -0.16586 0.28867 20.98900; 190722-22:19:10,176 nipype.interface INFO: stdout 2019-07-22T22:19:10.176090: 0.00491 -0.23106 -0.13303 54.16702; 190722-22:19:10,176 nipype.interface INFO: stdout 2019-07-22T22:19:10.176090: 0.00000 0.00000 0.00000 1.00000; 190722-22:19:11,503 nipype.interface INFO: stdout 2019-07-22T22:19:11.502914: 190722-22:19:11,503 nipype.interface INFO: stdout 2019-07-22T22:19:11.502914:Resampling 190722-22:19:11,503 nipype.interface INFO: stdout 2019-07-22T22:19:11.502914:Output registration matrix is identity 190722-22:19:11,503 nipype.interface INFO: stdout 2019-07-22T22:19:11.502914: 190722-22:19:11,503 nipype.interface INFO: stdout 2019-07-22T22:19:11.502914:mri_vol2vol done 190722-22:19:39,922 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-22:19:40,509 nipype.workflow INFO: [Job 139] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister). 190722-22:19:40,512 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:40,708 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.reports" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/reports". 190722-22:19:40,713 nipype.workflow INFO: [Node] Running "reports" ("nipype.interfaces.utility.base.Merge") 190722-22:19:40,718 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.reports". 190722-22:19:40,718 nipype.workflow INFO: [Job 140] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.reports). 190722-22:19:40,872 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.transforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/transforms". 190722-22:19:40,886 nipype.workflow INFO: [Node] Running "transforms" ("nipype.interfaces.utility.base.Merge") 190722-22:19:40,891 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.transforms". 190722-22:19:40,891 nipype.workflow INFO: [Job 141] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.transforms). 190722-22:19:42,511 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:44,512 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:44,753 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-22:19:44,798 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.lta --outlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-22:19:44,960 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-22:19:46,512 nipype.workflow INFO: [Job 418] Completed (_lta_ras2ras0). 190722-22:19:46,514 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:46,822 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-22:19:46,836 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-22:19:47,50 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-22:19:48,513 nipype.workflow INFO: [Job 419] Completed (_lta_ras2ras1). 190722-22:19:48,515 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:48,859 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-22:19:48,886 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-22:19:48,887 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-22:19:48,887 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-22:19:48,888 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-22:19:48,889 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-22:19:48,889 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-22:19:48,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-22:19:50,515 nipype.workflow INFO: [Job 142] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras). 190722-22:19:50,518 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:50,747 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-22:19:50,764 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-22:19:50,777 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-22:19:52,516 nipype.workflow INFO: [Job 143] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms). 190722-22:19:52,519 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:52,752 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/select_report". 190722-22:19:52,756 nipype.workflow INFO: [Node] Running "select_report" ("nipype.interfaces.utility.base.Select") 190722-22:19:52,761 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_report". 190722-22:19:52,761 nipype.workflow INFO: [Job 144] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_report). 190722-22:19:53,26 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/select_transform". 190722-22:19:53,31 nipype.workflow INFO: [Node] Running "select_transform" ("nipype.interfaces.utility.base.Select") 190722-22:19:53,37 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_transform". 190722-22:19:53,37 nipype.workflow INFO: [Job 146] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_transform). 190722-22:19:54,519 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:54,732 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.ds_report_reg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/ds_report_reg". 190722-22:19:54,737 nipype.workflow INFO: [Node] Running "ds_report_reg" ("fmriprep.interfaces.DerivativesDataSink") 190722-22:19:54,745 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.ds_report_reg". 190722-22:19:54,745 nipype.workflow INFO: [Job 145] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.ds_report_reg). 190722-22:19:55,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-22:19:55,165 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.lta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-22:19:55,445 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-22:19:56,518 nipype.workflow INFO: [Job 147] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat). 190722-22:19:56,521 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:56,738 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-22:19:56,744 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-22:19:56,942 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-22:19:58,519 nipype.workflow INFO: [Job 148] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv). 190722-22:19:58,522 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:19:58,699 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-22:19:58,704 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-22:19:58,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-22:20:00,520 nipype.workflow INFO: [Job 149] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd). 190722-22:20:00,523 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:20:00,786 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-22:20:00,792 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/applyrefined/sub-001_T1w_corrected_xform_masked.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:20:01,391 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-22:20:02,521 nipype.workflow INFO: [Job 196] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv). 190722-22:20:02,524 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:20:02,680 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-22:20:02,686 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/applyrefined/sub-001_T1w_corrected_xform_masked.nii.gz -src /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-22:20:03,171 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-22:20:04,522 nipype.workflow INFO: [Job 197] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd). 190722-22:20:04,525 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:20:04,648 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/merge_xforms". 190722-22:20:04,656 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190722-22:20:04,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge_xforms". 190722-22:20:04,666 nipype.workflow INFO: [Job 198] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge_xforms). 190722-22:20:04,814 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-22:20:04,821 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-001_T1w_corrected_xform_masked_reference.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-22:20:06,524 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 219.13/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:20:06,857 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-22:20:08,525 nipype.workflow INFO: [Job 214] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm). 190722-22:20:08,528 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:20:08,726 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.boldmask_to_t1w" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/boldmask_to_t1w". 190722-22:20:08,732 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-22:20:10,528 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 219.13/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.boldmask_to_t1w * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:20:10,796 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.boldmask_to_t1w". 190722-22:20:12,528 nipype.workflow INFO: [Job 215] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.boldmask_to_t1w). 190722-22:20:12,531 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:20:12,769 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_t1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_mask_t1". 190722-22:20:12,774 nipype.workflow INFO: [Node] Running "ds_bold_mask_t1" ("fmriprep.interfaces.DerivativesDataSink") 190722-22:20:12,843 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_t1". 190722-22:20:12,843 nipype.workflow INFO: [Job 216] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_t1). 190722-22:20:13,92 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-22:20:13,99 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-22:20:13,405 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-22:20:14,529 nipype.workflow INFO: [Job 217] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190722-22:20:14,532 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 219.23/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:28,960 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg". 190722-22:21:30,567 nipype.workflow INFO: [Job 230] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg). 190722-22:21:30,570 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 8 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:30,717 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_tpms". 190722-22:21:30,727 nipype.workflow INFO: [Node] Running "ds_t1_tpms" ("smriprep.interfaces.DerivativesDataSink") 190722-22:21:37,16 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms". 190722-22:21:37,17 nipype.workflow INFO: [Job 357] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms). 190722-22:21:37,291 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/lut_t1_seg". 190722-22:21:37,294 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/wm_roi". 190722-22:21:37,295 nipype.workflow INFO: [Node] Running "lut_t1_seg" ("nipype.interfaces.utility.wrappers.Function") 190722-22:21:37,299 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 5 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:37,300 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:21:37,919 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg". 190722-22:21:39,296 nipype.workflow INFO: [Job 358] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg). 190722-22:21:39,299 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 6 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:39,498 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_seg". 190722-22:21:39,511 nipype.workflow INFO: [Node] Running "ds_t1_seg" ("smriprep.interfaces.DerivativesDataSink") 190722-22:21:42,507 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg". 190722-22:21:42,507 nipype.workflow INFO: [Job 359] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg). 190722-22:21:42,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_roi" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_roi". 190722-22:21:42,739 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 4 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_roi * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:42,739 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:21:43,727 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi". 190722-22:21:43,881 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_roi". 190722-22:21:44,738 nipype.workflow INFO: [Job 360] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi). 190722-22:21:44,739 nipype.workflow INFO: [Job 363] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_roi). 190722-22:21:44,742 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 7 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:44,923 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/wm_tfm". 190722-22:21:44,926 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tcc_tfm". 190722-22:21:44,930 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/wm_roi/sub-001_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-001_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:21:44,932 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_roi/sub-001_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-001_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:21:45,185 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_tfm". 190722-22:21:45,252 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_tfm". 190722-22:21:46,739 nipype.workflow INFO: [Job 361] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_tfm). 190722-22:21:46,740 nipype.workflow INFO: [Job 364] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_tfm). 190722-22:21:46,743 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 7 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:47,44 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/wm_msk". 190722-22:21:47,46 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tcc_msk". 190722-22:21:47,50 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-22:21:47,56 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-22:21:47,101 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_msk". 190722-22:21:47,139 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_msk". 190722-22:21:48,740 nipype.workflow INFO: [Job 362] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_msk). 190722-22:21:48,741 nipype.workflow INFO: [Job 365] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_msk). 190722-22:21:48,744 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:48,949 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcompcor" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tcompcor". 190722-22:21:48,951 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_tfm". 190722-22:21:48,954 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-22:21:48,957 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_roi/sub-001_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-001_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:21:49,362 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_tfm". 190722-22:21:50,210 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcompcor". 190722-22:21:50,741 nipype.workflow INFO: [Job 366] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcompcor). 190722-22:21:50,742 nipype.workflow INFO: [Job 368] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_tfm). 190722-22:21:50,745 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 6 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:50,960 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-22:21:50,962 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_msk". 190722-22:21:50,965 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-22:21:50,967 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-22:21:51,36 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_msk". 190722-22:21:51,63 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-22:21:52,742 nipype.workflow INFO: [Job 367] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt). 190722-22:21:52,743 nipype.workflow INFO: [Job 369] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_msk). 190722-22:21:52,746 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 5 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:52,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_rois". 190722-22:21:53,9 nipype.workflow INFO: [Node] Running "merge_rois" ("nipype.interfaces.utility.base.Merge") 190722-22:21:53,35 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois". 190722-22:21:53,35 nipype.workflow INFO: [Job 370] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois). 190722-22:21:53,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:21:53,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/seg_rpt". 190722-22:21:53,235 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:21:53,238 nipype.workflow INFO: [Node] Running "seg_rpt" ("niworkflows.interfaces.masks.ROIsPlot") 190722-22:21:54,744 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:55,146 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:21:56,745 nipype.workflow INFO: [Job 372] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm). 190722-22:21:56,748 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:56,967 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.signals" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/signals". 190722-22:21:56,971 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-22:21:58,234 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.signals". 190722-22:21:58,746 nipype.workflow INFO: [Job 371] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.signals). 190722-22:21:58,749 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:21:58,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_roi". 190722-22:21:58,962 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:22:00,749 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:05,509 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi". 190722-22:22:06,753 nipype.workflow INFO: [Job 373] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi). 190722-22:22:06,756 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:07,27 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_tfm". 190722-22:22:07,34 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_roi/sub-001_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-001_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:22:07,332 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_tfm". 190722-22:22:08,754 nipype.workflow INFO: [Job 374] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_tfm). 190722-22:22:08,756 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:08,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_msk". 190722-22:22:08,941 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-22:22:08,998 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_msk". 190722-22:22:10,755 nipype.workflow INFO: [Job 375] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_msk). 190722-22:22:10,758 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:10,900 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_compcor". 190722-22:22:10,904 nipype.workflow INFO: [Node] Running "merge_compcor" ("nipype.interfaces.utility.base.Merge") 190722-22:22:10,909 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor". 190722-22:22:10,909 nipype.workflow INFO: [Job 376] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor). 190722-22:22:11,103 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois_cc" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_rois_cc". 190722-22:22:11,107 nipype.workflow INFO: [Node] Running "merge_rois_cc" ("nipype.interfaces.utility.base.Merge") 190722-22:22:11,113 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois_cc". 190722-22:22:11,113 nipype.workflow INFO: [Job 379] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois_cc). 190722-22:22:12,757 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:12,947 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/rois_plot". 190722-22:22:12,952 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-22:22:14,758 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 221.81/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:21,794 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot". 190722-22:22:22,765 nipype.workflow INFO: [Job 377] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot). 190722-22:22:22,768 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:23,7 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_bold_rois" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/ds_report_bold_rois". 190722-22:22:23,18 nipype.workflow INFO: [Node] Running "ds_report_bold_rois" ("fmriprep.interfaces.DerivativesDataSink") 190722-22:22:23,33 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_bold_rois". 190722-22:22:23,34 nipype.workflow INFO: [Job 378] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_bold_rois). 190722-22:22:23,242 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acompcor" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acompcor". 190722-22:22:23,247 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-22:22:24,770 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 221.81/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acompcor * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:24,830 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acompcor". 190722-22:22:26,770 nipype.workflow INFO: [Job 380] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acompcor). 190722-22:22:26,773 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:26,926 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor_metadata" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_compcor_metadata". 190722-22:22:26,931 nipype.workflow INFO: [Node] Running "merge_compcor_metadata" ("nipype.interfaces.utility.base.Merge") 190722-22:22:26,936 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor_metadata". 190722-22:22:26,936 nipype.workflow INFO: [Job 381] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor_metadata). 190722-22:22:27,111 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_metadata_fmt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_metadata_fmt". 190722-22:22:27,116 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-22:22:27,318 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_metadata_fmt". 190722-22:22:28,771 nipype.workflow INFO: [Job 384] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_metadata_fmt). 190722-22:22:28,774 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:28,948 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.compcor_plot" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/compcor_plot". 190722-22:22:28,954 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-22:22:29,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.compcor_plot". 190722-22:22:30,772 nipype.workflow INFO: [Job 382] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.compcor_plot). 190722-22:22:30,775 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:30,977 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_compcor" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/ds_report_compcor". 190722-22:22:30,982 nipype.workflow INFO: [Node] Running "ds_report_compcor" ("fmriprep.interfaces.DerivativesDataSink") 190722-22:22:30,989 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_compcor". 190722-22:22:30,989 nipype.workflow INFO: [Job 383] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_compcor). 190722-22:22:31,316 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_confound_metadata". 190722-22:22:31,577 nipype.workflow INFO: [Node] Running "merge_confound_metadata" ("nipype.interfaces.utility.base.Merge") 190722-22:22:31,923 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata". 190722-22:22:31,923 nipype.workflow INFO: [Job 385] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata). 190722-22:22:32,98 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.concat" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/concat". 190722-22:22:32,103 nipype.workflow INFO: [Node] Running "concat" ("fmriprep.interfaces.confounds.GatherConfounds") 190722-22:22:33,711 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.concat". 190722-22:22:33,711 nipype.workflow INFO: [Job 387] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.concat). 190722-22:22:33,916 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:34,258 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_confound_metadata2". 190722-22:22:34,583 nipype.workflow INFO: [Node] Running "merge_confound_metadata2" ("niworkflows.interfaces.utils.DictMerge") 190722-22:22:34,990 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata2". 190722-22:22:34,991 nipype.workflow INFO: [Job 386] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata2). 190722-22:22:35,212 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.conf_corr_plot" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/conf_corr_plot". 190722-22:22:35,217 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-22:22:35,903 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.conf_corr_plot * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:40,304 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.conf_corr_plot". 190722-22:22:41,908 nipype.workflow INFO: [Job 388] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.conf_corr_plot). 190722-22:22:41,911 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:42,113 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_conf_corr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/ds_report_conf_corr". 190722-22:22:42,118 nipype.workflow INFO: [Node] Running "ds_report_conf_corr" ("fmriprep.interfaces.DerivativesDataSink") 190722-22:22:42,125 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_conf_corr". 190722-22:22:42,125 nipype.workflow INFO: [Job 389] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_conf_corr). 190722-22:22:42,329 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.model_expansion" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/model_expansion". 190722-22:22:42,334 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-22:22:43,451 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.model_expansion". 190722-22:22:43,909 nipype.workflow INFO: [Job 390] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.model_expansion). 190722-22:22:43,912 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:22:44,31 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.spike_regressors" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/spike_regressors". 190722-22:22:44,36 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-22:22:44,929 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.spike_regressors". 190722-22:22:45,910 nipype.workflow INFO: [Job 391] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.spike_regressors). 190722-22:22:45,912 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:23:39,444 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt". 190722-22:23:39,939 nipype.workflow INFO: [Job 398] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt). 190722-22:23:39,941 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 3 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:23:40,128 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_reports_wf/ds_t1_seg_mask_report". 190722-22:23:40,134 nipype.workflow INFO: [Node] Running "ds_t1_seg_mask_report" ("smriprep.interfaces.DerivativesDataSink") 190722-22:23:40,169 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report". 190722-22:23:40,169 nipype.workflow INFO: [Job 399] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report). 190722-22:23:41,941 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190722-22:43:01,540 nipype.workflow INFO: [Node] Finished "_midthickness1". 190722-22:43:02,543 nipype.workflow INFO: [Job 417] Completed (_midthickness1). 190722-22:43:02,545 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 222.43/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness0 190722-22:44:46,335 nipype.workflow INFO: [Node] Finished "_midthickness0". 190722-22:44:46,595 nipype.workflow INFO: [Job 416] Completed (_midthickness0). 190722-22:44:46,597 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:44:46,980 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness". 190722-22:44:46,986 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190722-22:44:46,987 nipype.workflow INFO: [Node] Cached "_midthickness0" - collecting precomputed outputs 190722-22:44:46,987 nipype.workflow INFO: [Node] "_midthickness0" found cached. 190722-22:44:46,988 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190722-22:44:46,989 nipype.workflow INFO: [Node] Cached "_midthickness1" - collecting precomputed outputs 190722-22:44:46,990 nipype.workflow INFO: [Node] "_midthickness1" found cached. 190722-22:44:46,993 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness". 190722-22:44:48,596 nipype.workflow INFO: [Job 401] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness). 190722-22:44:48,599 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:44:48,848 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/save_midthickness". 190722-22:44:48,854 nipype.workflow INFO: [Node] Running "save_midthickness" ("nipype.interfaces.io.DataSink") 190722-22:44:48,860 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness". 190722-22:44:50,597 nipype.workflow INFO: [Job 402] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness). 190722-22:44:50,600 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:44:50,821 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.surface_list" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/surface_list". 190722-22:44:50,826 nipype.workflow INFO: [Node] Running "surface_list" ("nipype.interfaces.utility.base.Merge") 190722-22:44:50,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.surface_list". 190722-22:44:50,832 nipype.workflow INFO: [Job 403] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.surface_list). 190722-22:44:52,599 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:44:54,600 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 10 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:44:54,880 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190722-22:44:54,886 nipype.workflow INFO: [Node] Running "_fs_2_gii0" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/surf/rh.smoothwm /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0/rh.smoothwm_converted.gii 190722-22:44:54,891 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190722-22:44:54,895 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190722-22:44:54,899 nipype.workflow INFO: [Node] Running "_fs_2_gii1" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/surf/lh.smoothwm /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1/lh.smoothwm_converted.gii 190722-22:44:54,902 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190722-22:44:54,903 nipype.workflow INFO: [Node] Running "_fs_2_gii2" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/surf/rh.pial /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2/rh.pial_converted.gii 190722-22:44:54,912 nipype.workflow INFO: [Node] Running "_fs_2_gii3" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/surf/lh.pial /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3/lh.pial_converted.gii 190722-22:44:56,601 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * _fs_2_gii3 * _fs_2_gii2 * _fs_2_gii1 * _fs_2_gii0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:44:58,702 nipype.workflow INFO: [Node] Finished "_fs_2_gii0". 190722-22:44:59,245 nipype.workflow INFO: [Node] Finished "_fs_2_gii1". 190722-22:44:59,307 nipype.workflow INFO: [Node] Finished "_fs_2_gii3". 190722-22:44:59,541 nipype.workflow INFO: [Node] Finished "_fs_2_gii2". 190722-22:45:00,604 nipype.workflow INFO: [Job 420] Completed (_fs_2_gii0). 190722-22:45:00,604 nipype.workflow INFO: [Job 421] Completed (_fs_2_gii1). 190722-22:45:00,605 nipype.workflow INFO: [Job 422] Completed (_fs_2_gii2). 190722-22:45:00,605 nipype.workflow INFO: [Job 423] Completed (_fs_2_gii3). 190722-22:45:00,607 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:00,762 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190722-22:45:00,768 nipype.workflow INFO: [Node] Running "_fs_2_gii4" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/surf/rh.inflated /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4/rh.inflated_converted.gii 190722-22:45:00,774 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190722-22:45:00,775 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190722-22:45:00,776 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190722-22:45:00,781 nipype.workflow INFO: [Node] Running "_fs_2_gii5" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/surf/lh.inflated /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5/lh.inflated_converted.gii 190722-22:45:00,782 nipype.workflow INFO: [Node] Running "_fs_2_gii6" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/surf/rh.midthickness /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6/rh.midthickness_converted.gii 190722-22:45:00,783 nipype.workflow INFO: [Node] Running "_fs_2_gii7" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep/freesurfer/sub-001/surf/lh.midthickness /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7/lh.midthickness_converted.gii 190722-22:45:02,606 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * _fs_2_gii7 * _fs_2_gii6 * _fs_2_gii5 * _fs_2_gii4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:03,830 nipype.workflow INFO: [Node] Finished "_fs_2_gii4". 190722-22:45:04,47 nipype.workflow INFO: [Node] Finished "_fs_2_gii6". 190722-22:45:04,108 nipype.workflow INFO: [Node] Finished "_fs_2_gii5". 190722-22:45:04,345 nipype.workflow INFO: [Node] Finished "_fs_2_gii7". 190722-22:45:04,607 nipype.workflow INFO: [Job 424] Completed (_fs_2_gii4). 190722-22:45:04,607 nipype.workflow INFO: [Job 425] Completed (_fs_2_gii5). 190722-22:45:04,608 nipype.workflow INFO: [Job 426] Completed (_fs_2_gii6). 190722-22:45:04,608 nipype.workflow INFO: [Job 427] Completed (_fs_2_gii7). 190722-22:45:04,610 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:04,905 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii". 190722-22:45:04,911 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190722-22:45:04,913 nipype.workflow INFO: [Node] Cached "_fs_2_gii0" - collecting precomputed outputs 190722-22:45:04,913 nipype.workflow INFO: [Node] "_fs_2_gii0" found cached. 190722-22:45:04,914 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190722-22:45:04,915 nipype.workflow INFO: [Node] Cached "_fs_2_gii1" - collecting precomputed outputs 190722-22:45:04,915 nipype.workflow INFO: [Node] "_fs_2_gii1" found cached. 190722-22:45:04,916 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190722-22:45:04,917 nipype.workflow INFO: [Node] Cached "_fs_2_gii2" - collecting precomputed outputs 190722-22:45:04,917 nipype.workflow INFO: [Node] "_fs_2_gii2" found cached. 190722-22:45:04,918 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190722-22:45:04,919 nipype.workflow INFO: [Node] Cached "_fs_2_gii3" - collecting precomputed outputs 190722-22:45:04,919 nipype.workflow INFO: [Node] "_fs_2_gii3" found cached. 190722-22:45:04,920 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190722-22:45:04,926 nipype.workflow INFO: [Node] Cached "_fs_2_gii4" - collecting precomputed outputs 190722-22:45:04,926 nipype.workflow INFO: [Node] "_fs_2_gii4" found cached. 190722-22:45:04,927 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190722-22:45:04,928 nipype.workflow INFO: [Node] Cached "_fs_2_gii5" - collecting precomputed outputs 190722-22:45:04,928 nipype.workflow INFO: [Node] "_fs_2_gii5" found cached. 190722-22:45:04,929 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190722-22:45:04,930 nipype.workflow INFO: [Node] Cached "_fs_2_gii6" - collecting precomputed outputs 190722-22:45:04,930 nipype.workflow INFO: [Node] "_fs_2_gii6" found cached. 190722-22:45:04,931 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190722-22:45:04,943 nipype.workflow INFO: [Node] Cached "_fs_2_gii7" - collecting precomputed outputs 190722-22:45:04,943 nipype.workflow INFO: [Node] "_fs_2_gii7" found cached. 190722-22:45:04,948 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii". 190722-22:45:06,608 nipype.workflow INFO: [Job 404] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii). 190722-22:45:06,610 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:08,610 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 10 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:08,856 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190722-22:45:08,857 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190722-22:45:08,862 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190722-22:45:08,862 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190722-22:45:08,863 nipype.workflow INFO: [Node] Running "_fix_surfs0" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-22:45:08,867 nipype.workflow INFO: [Node] Running "_fix_surfs1" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-22:45:08,869 nipype.workflow INFO: [Node] Running "_fix_surfs3" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-22:45:08,885 nipype.workflow INFO: [Node] Running "_fix_surfs2" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-22:45:09,679 nipype.workflow INFO: [Node] Finished "_fix_surfs0". 190722-22:45:09,761 nipype.workflow INFO: [Node] Finished "_fix_surfs2". 190722-22:45:09,880 nipype.workflow INFO: [Node] Finished "_fix_surfs1". 190722-22:45:09,886 nipype.workflow INFO: [Node] Finished "_fix_surfs3". 190722-22:45:10,610 nipype.workflow INFO: [Job 428] Completed (_fix_surfs0). 190722-22:45:10,610 nipype.workflow INFO: [Job 429] Completed (_fix_surfs1). 190722-22:45:10,611 nipype.workflow INFO: [Job 430] Completed (_fix_surfs2). 190722-22:45:10,611 nipype.workflow INFO: [Job 431] Completed (_fix_surfs3). 190722-22:45:10,613 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:10,912 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190722-22:45:10,916 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190722-22:45:10,919 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190722-22:45:10,920 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190722-22:45:10,925 nipype.workflow INFO: [Node] Running "_fix_surfs6" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-22:45:10,926 nipype.workflow INFO: [Node] Running "_fix_surfs5" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-22:45:10,927 nipype.workflow INFO: [Node] Running "_fix_surfs4" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-22:45:10,940 nipype.workflow INFO: [Node] Running "_fix_surfs7" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-22:45:11,889 nipype.workflow INFO: [Node] Finished "_fix_surfs5". 190722-22:45:12,23 nipype.workflow INFO: [Node] Finished "_fix_surfs6". 190722-22:45:12,109 nipype.workflow INFO: [Node] Finished "_fix_surfs4". 190722-22:45:12,112 nipype.workflow INFO: [Node] Finished "_fix_surfs7". 190722-22:45:12,611 nipype.workflow INFO: [Job 432] Completed (_fix_surfs4). 190722-22:45:12,611 nipype.workflow INFO: [Job 433] Completed (_fix_surfs5). 190722-22:45:12,612 nipype.workflow INFO: [Job 434] Completed (_fix_surfs6). 190722-22:45:12,612 nipype.workflow INFO: [Job 435] Completed (_fix_surfs7). 190722-22:45:12,614 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:12,873 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs". 190722-22:45:12,878 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190722-22:45:12,879 nipype.workflow INFO: [Node] Cached "_fix_surfs0" - collecting precomputed outputs 190722-22:45:12,879 nipype.workflow INFO: [Node] "_fix_surfs0" found cached. 190722-22:45:12,880 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190722-22:45:12,881 nipype.workflow INFO: [Node] Cached "_fix_surfs1" - collecting precomputed outputs 190722-22:45:12,881 nipype.workflow INFO: [Node] "_fix_surfs1" found cached. 190722-22:45:12,881 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190722-22:45:12,882 nipype.workflow INFO: [Node] Cached "_fix_surfs2" - collecting precomputed outputs 190722-22:45:12,882 nipype.workflow INFO: [Node] "_fix_surfs2" found cached. 190722-22:45:12,883 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190722-22:45:12,892 nipype.workflow INFO: [Node] Cached "_fix_surfs3" - collecting precomputed outputs 190722-22:45:12,892 nipype.workflow INFO: [Node] "_fix_surfs3" found cached. 190722-22:45:12,893 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190722-22:45:12,894 nipype.workflow INFO: [Node] Cached "_fix_surfs4" - collecting precomputed outputs 190722-22:45:12,894 nipype.workflow INFO: [Node] "_fix_surfs4" found cached. 190722-22:45:12,895 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190722-22:45:12,896 nipype.workflow INFO: [Node] Cached "_fix_surfs5" - collecting precomputed outputs 190722-22:45:12,896 nipype.workflow INFO: [Node] "_fix_surfs5" found cached. 190722-22:45:12,897 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190722-22:45:12,898 nipype.workflow INFO: [Node] Cached "_fix_surfs6" - collecting precomputed outputs 190722-22:45:12,898 nipype.workflow INFO: [Node] "_fix_surfs6" found cached. 190722-22:45:12,898 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190722-22:45:12,899 nipype.workflow INFO: [Node] Cached "_fix_surfs7" - collecting precomputed outputs 190722-22:45:12,899 nipype.workflow INFO: [Node] "_fix_surfs7" found cached. 190722-22:45:12,904 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs". 190722-22:45:14,612 nipype.workflow INFO: [Job 405] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs). 190722-22:45:14,614 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:16,614 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 10 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:16,903 nipype.workflow INFO: [Node] Setting-up "_name_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs0". 190722-22:45:16,914 nipype.workflow INFO: [Node] Running "_name_surfs0" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-22:45:16,919 nipype.workflow INFO: [Node] Finished "_name_surfs0". 190722-22:45:16,919 nipype.workflow INFO: [Job 436] Completed (_name_surfs0). 190722-22:45:17,198 nipype.workflow INFO: [Node] Setting-up "_name_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs1". 190722-22:45:17,219 nipype.workflow INFO: [Node] Running "_name_surfs1" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-22:45:17,224 nipype.workflow INFO: [Node] Finished "_name_surfs1". 190722-22:45:17,224 nipype.workflow INFO: [Job 437] Completed (_name_surfs1). 190722-22:45:17,488 nipype.workflow INFO: [Node] Setting-up "_name_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs2". 190722-22:45:17,492 nipype.workflow INFO: [Node] Running "_name_surfs2" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-22:45:17,497 nipype.workflow INFO: [Node] Finished "_name_surfs2". 190722-22:45:17,497 nipype.workflow INFO: [Job 438] Completed (_name_surfs2). 190722-22:45:17,742 nipype.workflow INFO: [Node] Setting-up "_name_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs3". 190722-22:45:17,762 nipype.workflow INFO: [Node] Running "_name_surfs3" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-22:45:17,768 nipype.workflow INFO: [Node] Finished "_name_surfs3". 190722-22:45:17,768 nipype.workflow INFO: [Job 439] Completed (_name_surfs3). 190722-22:45:18,22 nipype.workflow INFO: [Node] Setting-up "_name_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs4". 190722-22:45:18,27 nipype.workflow INFO: [Node] Running "_name_surfs4" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-22:45:18,32 nipype.workflow INFO: [Node] Finished "_name_surfs4". 190722-22:45:18,32 nipype.workflow INFO: [Job 440] Completed (_name_surfs4). 190722-22:45:18,252 nipype.workflow INFO: [Node] Setting-up "_name_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs5". 190722-22:45:18,256 nipype.workflow INFO: [Node] Running "_name_surfs5" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-22:45:18,261 nipype.workflow INFO: [Node] Finished "_name_surfs5". 190722-22:45:18,261 nipype.workflow INFO: [Job 441] Completed (_name_surfs5). 190722-22:45:18,556 nipype.workflow INFO: [Node] Setting-up "_name_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs6". 190722-22:45:18,560 nipype.workflow INFO: [Node] Running "_name_surfs6" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-22:45:18,569 nipype.workflow INFO: [Node] Finished "_name_surfs6". 190722-22:45:18,570 nipype.workflow INFO: [Job 442] Completed (_name_surfs6). 190722-22:45:18,875 nipype.workflow INFO: [Node] Setting-up "_name_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs7". 190722-22:45:18,879 nipype.workflow INFO: [Node] Running "_name_surfs7" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-22:45:18,884 nipype.workflow INFO: [Node] Finished "_name_surfs7". 190722-22:45:18,884 nipype.workflow INFO: [Job 443] Completed (_name_surfs7). 190722-22:45:19,130 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:19,312 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.name_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs". 190722-22:45:19,316 nipype.workflow INFO: [Node] Setting-up "_name_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs0". 190722-22:45:19,317 nipype.workflow INFO: [Node] Cached "_name_surfs0" - collecting precomputed outputs 190722-22:45:19,317 nipype.workflow INFO: [Node] "_name_surfs0" found cached. 190722-22:45:19,318 nipype.workflow INFO: [Node] Setting-up "_name_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs1". 190722-22:45:19,330 nipype.workflow INFO: [Node] Cached "_name_surfs1" - collecting precomputed outputs 190722-22:45:19,330 nipype.workflow INFO: [Node] "_name_surfs1" found cached. 190722-22:45:19,331 nipype.workflow INFO: [Node] Setting-up "_name_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs2". 190722-22:45:19,332 nipype.workflow INFO: [Node] Cached "_name_surfs2" - collecting precomputed outputs 190722-22:45:19,332 nipype.workflow INFO: [Node] "_name_surfs2" found cached. 190722-22:45:19,333 nipype.workflow INFO: [Node] Setting-up "_name_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs3". 190722-22:45:19,334 nipype.workflow INFO: [Node] Cached "_name_surfs3" - collecting precomputed outputs 190722-22:45:19,334 nipype.workflow INFO: [Node] "_name_surfs3" found cached. 190722-22:45:19,334 nipype.workflow INFO: [Node] Setting-up "_name_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs4". 190722-22:45:19,335 nipype.workflow INFO: [Node] Cached "_name_surfs4" - collecting precomputed outputs 190722-22:45:19,335 nipype.workflow INFO: [Node] "_name_surfs4" found cached. 190722-22:45:19,336 nipype.workflow INFO: [Node] Setting-up "_name_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs5". 190722-22:45:19,346 nipype.workflow INFO: [Node] Cached "_name_surfs5" - collecting precomputed outputs 190722-22:45:19,346 nipype.workflow INFO: [Node] "_name_surfs5" found cached. 190722-22:45:19,347 nipype.workflow INFO: [Node] Setting-up "_name_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs6". 190722-22:45:19,348 nipype.workflow INFO: [Node] Cached "_name_surfs6" - collecting precomputed outputs 190722-22:45:19,348 nipype.workflow INFO: [Node] "_name_surfs6" found cached. 190722-22:45:19,349 nipype.workflow INFO: [Node] Setting-up "_name_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs7". 190722-22:45:19,349 nipype.workflow INFO: [Node] Cached "_name_surfs7" - collecting precomputed outputs 190722-22:45:19,350 nipype.workflow INFO: [Node] "_name_surfs7" found cached. 190722-22:45:19,362 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.name_surfs". 190722-22:45:19,362 nipype.workflow INFO: [Job 406] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.name_surfs). 190722-22:45:21,112 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:23,113 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 10 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:23,282 nipype.workflow INFO: [Node] Setting-up "_ds_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs0". 190722-22:45:23,287 nipype.workflow INFO: [Node] Running "_ds_surfs0" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:23,294 nipype.workflow INFO: [Node] Finished "_ds_surfs0". 190722-22:45:23,294 nipype.workflow INFO: [Job 444] Completed (_ds_surfs0). 190722-22:45:23,493 nipype.workflow INFO: [Node] Setting-up "_ds_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs1". 190722-22:45:23,498 nipype.workflow INFO: [Node] Running "_ds_surfs1" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:23,505 nipype.workflow INFO: [Node] Finished "_ds_surfs1". 190722-22:45:23,505 nipype.workflow INFO: [Job 445] Completed (_ds_surfs1). 190722-22:45:23,745 nipype.workflow INFO: [Node] Setting-up "_ds_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs2". 190722-22:45:23,750 nipype.workflow INFO: [Node] Running "_ds_surfs2" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:23,756 nipype.workflow INFO: [Node] Finished "_ds_surfs2". 190722-22:45:23,757 nipype.workflow INFO: [Job 446] Completed (_ds_surfs2). 190722-22:45:23,950 nipype.workflow INFO: [Node] Setting-up "_ds_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs3". 190722-22:45:23,955 nipype.workflow INFO: [Node] Running "_ds_surfs3" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:23,961 nipype.workflow INFO: [Node] Finished "_ds_surfs3". 190722-22:45:23,961 nipype.workflow INFO: [Job 447] Completed (_ds_surfs3). 190722-22:45:24,131 nipype.workflow INFO: [Node] Setting-up "_ds_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs4". 190722-22:45:24,136 nipype.workflow INFO: [Node] Running "_ds_surfs4" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:24,144 nipype.workflow INFO: [Node] Finished "_ds_surfs4". 190722-22:45:24,144 nipype.workflow INFO: [Job 448] Completed (_ds_surfs4). 190722-22:45:24,425 nipype.workflow INFO: [Node] Setting-up "_ds_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs5". 190722-22:45:24,430 nipype.workflow INFO: [Node] Running "_ds_surfs5" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:24,438 nipype.workflow INFO: [Node] Finished "_ds_surfs5". 190722-22:45:24,438 nipype.workflow INFO: [Job 449] Completed (_ds_surfs5). 190722-22:45:24,690 nipype.workflow INFO: [Node] Setting-up "_ds_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs6". 190722-22:45:24,694 nipype.workflow INFO: [Node] Running "_ds_surfs6" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:24,702 nipype.workflow INFO: [Node] Finished "_ds_surfs6". 190722-22:45:24,702 nipype.workflow INFO: [Job 450] Completed (_ds_surfs6). 190722-22:45:24,997 nipype.workflow INFO: [Node] Setting-up "_ds_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs7". 190722-22:45:25,3 nipype.workflow INFO: [Node] Running "_ds_surfs7" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,10 nipype.workflow INFO: [Node] Finished "_ds_surfs7". 190722-22:45:25,10 nipype.workflow INFO: [Job 451] Completed (_ds_surfs7). 190722-22:45:25,276 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-22:45:25,455 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs". 190722-22:45:25,468 nipype.workflow INFO: [Node] Setting-up "_ds_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs0". 190722-22:45:25,477 nipype.workflow INFO: [Node] Running "_ds_surfs0" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,493 nipype.workflow INFO: [Node] Finished "_ds_surfs0". 190722-22:45:25,494 nipype.workflow INFO: [Node] Setting-up "_ds_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs1". 190722-22:45:25,503 nipype.workflow INFO: [Node] Running "_ds_surfs1" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,519 nipype.workflow INFO: [Node] Finished "_ds_surfs1". 190722-22:45:25,520 nipype.workflow INFO: [Node] Setting-up "_ds_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs2". 190722-22:45:25,527 nipype.workflow INFO: [Node] Running "_ds_surfs2" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,540 nipype.workflow INFO: [Node] Finished "_ds_surfs2". 190722-22:45:25,541 nipype.workflow INFO: [Node] Setting-up "_ds_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs3". 190722-22:45:25,552 nipype.workflow INFO: [Node] Running "_ds_surfs3" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,561 nipype.workflow INFO: [Node] Finished "_ds_surfs3". 190722-22:45:25,562 nipype.workflow INFO: [Node] Setting-up "_ds_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs4". 190722-22:45:25,573 nipype.workflow INFO: [Node] Running "_ds_surfs4" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,586 nipype.workflow INFO: [Node] Finished "_ds_surfs4". 190722-22:45:25,587 nipype.workflow INFO: [Node] Setting-up "_ds_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs5". 190722-22:45:25,597 nipype.workflow INFO: [Node] Running "_ds_surfs5" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,607 nipype.workflow INFO: [Node] Finished "_ds_surfs5". 190722-22:45:25,608 nipype.workflow INFO: [Node] Setting-up "_ds_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs6". 190722-22:45:25,619 nipype.workflow INFO: [Node] Running "_ds_surfs6" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,629 nipype.workflow INFO: [Node] Finished "_ds_surfs6". 190722-22:45:25,630 nipype.workflow INFO: [Node] Setting-up "_ds_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs7". 190722-22:45:25,642 nipype.workflow INFO: [Node] Running "_ds_surfs7" ("smriprep.interfaces.DerivativesDataSink") 190722-22:45:25,654 nipype.workflow INFO: [Node] Finished "_ds_surfs7". 190722-22:45:25,664 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_surfs". 190722-22:45:25,664 nipype.workflow INFO: [Job 407] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_surfs). 190722-22:45:27,278 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:34,57 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration". 190722-23:21:34,372 nipype.workflow INFO: [Job 169] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration). 190722-23:21:34,375 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:34,680 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_t1_tpl_inv_warp". 190722-23:21:34,686 nipype.workflow INFO: [Node] Running "ds_t1_tpl_inv_warp" ("smriprep.interfaces.DerivativesDataSink") 190722-23:21:34,692 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp". 190722-23:21:34,693 nipype.workflow INFO: [Job 170] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp). 190722-23:21:34,994 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_t1_tpl_warp". 190722-23:21:34,999 nipype.workflow INFO: [Node] Running "ds_t1_tpl_warp" ("smriprep.interfaces.DerivativesDataSink") 190722-23:21:35,6 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp". 190722-23:21:35,6 nipype.workflow INFO: [Job 171] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp). 190722-23:21:35,297 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_mask". 190722-23:21:35,300 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_moving". 190722-23:21:35,303 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine/sub-001_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190722-23:21:35,303 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration". 190722-23:21:35,306 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-001_T1w_corrected_xform_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190722-23:21:35,308 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190722-23:21:35,329 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_seg". 190722-23:21:35,334 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190722-23:21:36,375 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:36,736 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms0". 190722-23:21:36,742 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190722-23:21:38,376 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:43,135 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190722-23:21:44,380 nipype.workflow INFO: [Job 452] Completed (_tpl_tpms0). 190722-23:21:44,382 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:44,691 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms1". 190722-23:21:44,696 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190722-23:21:46,383 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * _tpl_tpms1 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:48,206 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190722-23:21:48,383 nipype.workflow INFO: [Job 174] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving). 190722-23:21:48,386 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * _tpl_tpms1 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:48,841 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_t1_tpl". 190722-23:21:48,846 nipype.workflow INFO: [Node] Running "ds_t1_tpl" ("smriprep.interfaces.DerivativesDataSink") 190722-23:21:49,509 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl". 190722-23:21:49,509 nipype.workflow INFO: [Job 175] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl). 190722-23:21:49,971 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms2". 190722-23:21:49,977 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190722-23:21:50,385 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 1 jobs ready. Free memory (GB): 221.83/226.63, Free processors: 0/20. Currently running: * _tpl_tpms2 * _tpl_tpms1 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:52,708 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190722-23:21:54,387 nipype.workflow INFO: [Job 453] Completed (_tpl_tpms1). 190722-23:21:54,389 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 222.03/226.63, Free processors: 1/20. Currently running: * _tpl_tpms2 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:21:58,934 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190722-23:22:00,396 nipype.workflow INFO: [Job 454] Completed (_tpl_tpms2). 190722-23:22:00,398 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:22:00,634 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms". 190722-23:22:00,640 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms0". 190722-23:22:00,642 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190722-23:22:00,642 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190722-23:22:00,643 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms1". 190722-23:22:00,644 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190722-23:22:00,644 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190722-23:22:00,645 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms2". 190722-23:22:00,646 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190722-23:22:00,646 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190722-23:22:00,650 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190722-23:22:02,397 nipype.workflow INFO: [Job 236] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms). 190722-23:22:02,400 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:22:02,777 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_tpl_tpms". 190722-23:22:02,782 nipype.workflow INFO: [Node] Running "ds_tpl_tpms" ("smriprep.interfaces.DerivativesDataSink") 190722-23:22:03,694 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms". 190722-23:22:03,694 nipype.workflow INFO: [Job 237] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms). 190722-23:22:04,399 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 222.23/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:22:06,273 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190722-23:22:06,399 nipype.workflow INFO: [Job 172] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask). 190722-23:22:06,402 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 222.43/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:22:06,563 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190722-23:22:06,732 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_tpl_mask". 190722-23:22:06,737 nipype.workflow INFO: [Node] Running "ds_tpl_mask" ("smriprep.interfaces.DerivativesDataSink") 190722-23:22:06,987 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask". 190722-23:22:06,987 nipype.workflow INFO: [Job 173] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask). 190722-23:22:07,278 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/norm_msk". 190722-23:22:07,283 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:22:07,914 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190722-23:22:08,400 nipype.workflow INFO: [Job 238] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg). 190722-23:22:08,401 nipype.workflow INFO: [Job 176] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk). 190722-23:22:08,404 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:22:08,838 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/norm_rpt". 190722-23:22:08,843 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190722-23:22:08,847 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/lut_tpl_seg". 190722-23:22:08,852 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190722-23:22:08,975 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190722-23:22:10,401 nipype.workflow INFO: [Job 239] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg). 190722-23:22:10,404 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 222.53/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:22:10,630 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_tpl_seg". 190722-23:22:10,635 nipype.workflow INFO: [Node] Running "ds_tpl_seg" ("smriprep.interfaces.DerivativesDataSink") 190722-23:22:11,415 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg". 190722-23:22:11,415 nipype.workflow INFO: [Job 240] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg). 190722-23:22:12,403 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 222.53/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:22:20,834 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190722-23:22:22,407 nipype.workflow INFO: [Job 177] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt). 190722-23:22:22,410 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:22:22,761 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/ds_t1_2_tpl_report". 190722-23:22:22,766 nipype.workflow INFO: [Node] Running "ds_t1_2_tpl_report" ("smriprep.interfaces.DerivativesDataSink") 190722-23:22:22,773 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report". 190722-23:22:22,773 nipype.workflow INFO: [Job 178] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report). 190722-23:22:24,409 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 222.63/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:32:51,897 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration". 190722-23:32:52,739 nipype.workflow INFO: [Job 159] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration). 190722-23:32:52,742 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:32:52,960 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_t1_tpl_inv_warp". 190722-23:32:52,972 nipype.workflow INFO: [Node] Running "ds_t1_tpl_inv_warp" ("smriprep.interfaces.DerivativesDataSink") 190722-23:32:52,979 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp". 190722-23:32:52,979 nipype.workflow INFO: [Job 160] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp). 190722-23:32:53,228 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_t1_tpl_warp". 190722-23:32:53,233 nipype.workflow INFO: [Node] Running "ds_t1_tpl_warp" ("smriprep.interfaces.DerivativesDataSink") 190722-23:32:53,240 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp". 190722-23:32:53,240 nipype.workflow INFO: [Job 161] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp). 190722-23:32:53,541 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_mask". 190722-23:32:53,544 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_moving". 190722-23:32:53,547 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine/sub-001_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190722-23:32:53,551 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-001_T1w_corrected_xform_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190722-23:32:53,592 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190722-23:32:53,615 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-23:32:53,621 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_seg". 190722-23:32:53,628 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190722-23:32:54,742 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 220.98/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:32:54,995 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms0". 190722-23:32:55,2 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190722-23:32:56,743 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 220.78/226.63, Free processors: 0/20. Currently running: * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:01,695 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190722-23:33:02,747 nipype.workflow INFO: [Job 455] Completed (_tpl_tpms0). 190722-23:33:02,749 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 220.98/226.63, Free processors: 1/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:03,56 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms1". 190722-23:33:03,62 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190722-23:33:03,565 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190722-23:33:04,748 nipype.workflow INFO: [Job 164] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving). 190722-23:33:04,751 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 220.98/226.63, Free processors: 1/20. Currently running: * _tpl_tpms1 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:04,958 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_t1_tpl". 190722-23:33:04,974 nipype.workflow INFO: [Node] Running "ds_t1_tpl" ("smriprep.interfaces.DerivativesDataSink") 190722-23:33:05,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl". 190722-23:33:05,616 nipype.workflow INFO: [Job 165] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl). 190722-23:33:05,964 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms2". 190722-23:33:05,970 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190722-23:33:06,750 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 0 jobs ready. Free memory (GB): 220.78/226.63, Free processors: 0/20. Currently running: * _tpl_tpms2 * _tpl_tpms1 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:09,559 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190722-23:33:10,752 nipype.workflow INFO: [Job 456] Completed (_tpl_tpms1). 190722-23:33:10,754 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 220.98/226.63, Free processors: 1/20. Currently running: * _tpl_tpms2 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:12,781 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190722-23:33:14,754 nipype.workflow INFO: [Job 457] Completed (_tpl_tpms2). 190722-23:33:14,756 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 221.18/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:14,955 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms". 190722-23:33:14,985 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms0". 190722-23:33:14,986 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190722-23:33:14,986 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190722-23:33:14,987 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms1". 190722-23:33:14,989 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190722-23:33:14,989 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190722-23:33:14,990 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms2". 190722-23:33:14,991 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190722-23:33:14,991 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190722-23:33:14,998 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190722-23:33:16,755 nipype.workflow INFO: [Job 231] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms). 190722-23:33:16,758 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 221.18/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:16,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_tpl_tpms". 190722-23:33:16,989 nipype.workflow INFO: [Node] Running "ds_tpl_tpms" ("smriprep.interfaces.DerivativesDataSink") 190722-23:33:17,887 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms". 190722-23:33:17,887 nipype.workflow INFO: [Job 232] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms). 190722-23:33:18,757 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 221.18/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:19,787 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190722-23:33:20,170 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190722-23:33:20,757 nipype.workflow INFO: [Job 162] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask). 190722-23:33:20,758 nipype.workflow INFO: [Job 233] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg). 190722-23:33:20,761 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 221.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:20,935 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_tpl_mask". 190722-23:33:20,940 nipype.workflow INFO: [Node] Running "ds_tpl_mask" ("smriprep.interfaces.DerivativesDataSink") 190722-23:33:21,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask". 190722-23:33:21,246 nipype.workflow INFO: [Job 163] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask). 190722-23:33:21,458 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/norm_msk". 190722-23:33:21,459 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/lut_tpl_seg". 190722-23:33:21,463 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:33:21,464 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190722-23:33:21,632 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190722-23:33:21,950 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190722-23:33:22,758 nipype.workflow INFO: [Job 166] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk). 190722-23:33:22,759 nipype.workflow INFO: [Job 234] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg). 190722-23:33:22,762 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 221.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:23,42 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/norm_rpt". 190722-23:33:23,43 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_tpl_seg". 190722-23:33:23,48 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190722-23:33:23,49 nipype.workflow INFO: [Node] Running "ds_tpl_seg" ("smriprep.interfaces.DerivativesDataSink") 190722-23:33:23,647 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg". 190722-23:33:23,647 nipype.workflow INFO: [Job 235] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg). 190722-23:33:24,760 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 221.48/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:34,194 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190722-23:33:34,764 nipype.workflow INFO: [Job 167] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt). 190722-23:33:34,767 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 221.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:33:35,23 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/ds_t1_2_tpl_report". 190722-23:33:35,45 nipype.workflow INFO: [Node] Running "ds_t1_2_tpl_report" ("smriprep.interfaces.DerivativesDataSink") 190722-23:33:35,63 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report". 190722-23:33:35,63 nipype.workflow INFO: [Job 168] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report). 190722-23:33:36,766 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 221.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:03,441 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190722-23:34:04,779 nipype.workflow INFO: [Job 199] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform). 190722-23:34:04,782 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:05,274 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/merge". 190722-23:34:05,301 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-23:34:06,781 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 224.50/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:20,600 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge". 190722-23:34:20,788 nipype.workflow INFO: [Job 200] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge). 190722-23:34:20,791 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:21,214 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_t1". 190722-23:34:21,219 nipype.workflow INFO: [Node] Running "ds_bold_t1" ("fmriprep.interfaces.DerivativesDataSink") 190722-23:34:27,998 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1". 190722-23:34:27,998 nipype.workflow INFO: [Job 201] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1). 190722-23:34:28,102 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.resampling_xfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/resampling_xfm". 190722-23:34:28,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.rename_src" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/rename_src". 190722-23:34:28,109 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta --src /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz 190722-23:34:28,124 nipype.workflow INFO: [Node] Setting-up "_rename_src0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0". 190722-23:34:28,129 nipype.workflow INFO: [Node] Running "_rename_src0" ("nipype.interfaces.utility.base.Rename") 190722-23:34:28,135 nipype.workflow INFO: [Node] Finished "_rename_src0". 190722-23:34:28,137 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.rename_src". 190722-23:34:28,137 nipype.workflow INFO: [Job 204] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.rename_src). 190722-23:34:28,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.resampling_xfm". 190722-23:34:28,264 nipype.workflow INFO: [Job 202] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.resampling_xfm). 190722-23:34:28,267 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 224.62/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:28,271 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190722-23:34:28,282 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-23:34:28,290 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190722-23:34:28,548 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.set_xfm_source" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/set_xfm_source". 190722-23:34:28,554 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190722-23:34:28,798 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.set_xfm_source". 190722-23:34:30,266 nipype.workflow INFO: [Job 211] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate). 190722-23:34:30,267 nipype.workflow INFO: [Job 203] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.set_xfm_source). 190722-23:34:30,270 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:30,478 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_rh/sampler". 190722-23:34:30,486 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190722-23:34:30,492 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_lh/sampler". 190722-23:34:30,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190722-23:34:30,493 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-001 --reg /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190722-23:34:30,498 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-23:34:30,501 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190722-23:34:30,508 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-001 --reg /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190722-23:34:30,589 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190722-23:34:32,267 nipype.workflow INFO: [Job 212] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref). 190722-23:34:32,270 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:32,462 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/calc_dummy_scans". 190722-23:34:32,481 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190722-23:34:32,486 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans". 190722-23:34:32,486 nipype.workflow INFO: [Job 213] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans). 190722-23:34:32,639 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr". 190722-23:34:32,644 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190722-23:34:32,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190722-23:34:32,666 nipype.workflow INFO: [Job 218] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190722-23:34:34,270 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:34,467 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-23:34:34,474 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-23:34:36,270 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 223.67/226.63, Free processors: 9/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:36,534 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-23:34:38,270 nipype.workflow INFO: [Job 219] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190722-23:34:38,273 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:38,656 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_t1_ref". 190722-23:34:38,988 nipype.workflow INFO: [Node] Running "ds_bold_t1_ref" ("fmriprep.interfaces.DerivativesDataSink") 190722-23:34:39,125 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1_ref". 190722-23:34:39,125 nipype.workflow INFO: [Job 220] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1_ref). 190722-23:34:39,241 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-23:34:39,247 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-23:34:40,272 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 223.67/226.63, Free processors: 9/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:41,627 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-23:34:42,272 nipype.workflow INFO: [Job 221] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190722-23:34:42,275 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:42,430 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-23:34:42,436 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-23:34:42,830 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-23:34:44,273 nipype.workflow INFO: [Job 222] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190722-23:34:44,276 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:44,449 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-23:34:44,455 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-23:34:44,636 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-23:34:46,274 nipype.workflow INFO: [Job 223] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190722-23:34:46,277 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:46,502 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-23:34:46,508 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-23:34:47,940 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-23:34:48,275 nipype.workflow INFO: [Job 224] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190722-23:34:48,278 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:48,488 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-23:34:48,493 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-23:34:48,542 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-23:34:50,276 nipype.workflow INFO: [Job 225] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190722-23:34:50,279 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:50,460 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-23:34:50,466 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-23:34:50,749 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-23:34:52,277 nipype.workflow INFO: [Job 226] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190722-23:34:52,279 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:52,446 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-23:34:52,451 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-23:34:52,470 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-23:34:54,278 nipype.workflow INFO: [Job 227] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190722-23:34:54,281 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:54,435 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-23:34:54,441 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-23:34:54,708 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-23:34:56,279 nipype.workflow INFO: [Job 228] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190722-23:34:56,282 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:34:56,480 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-23:34:56,487 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-23:34:56,698 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-23:34:58,280 nipype.workflow INFO: [Job 229] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190722-23:34:58,282 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 223.87/226.63, Free processors: 10/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:35:32,568 nipype.workflow INFO: [Node] Finished "_sampler0". 190722-23:35:32,571 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler". 190722-23:35:34,298 nipype.workflow INFO: [Job 205] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler). 190722-23:35:34,300 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 224.25/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:35:35,153 nipype.workflow INFO: [Node] Finished "_sampler0". 190722-23:35:35,157 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler". 190722-23:35:36,299 nipype.workflow INFO: [Job 206] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler). 190722-23:35:36,301 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:35:36,505 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.merger" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/merger". 190722-23:35:36,510 nipype.workflow INFO: [Node] Running "merger" ("nipype.interfaces.utility.base.Merge") 190722-23:35:36,515 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.merger". 190722-23:35:36,515 nipype.workflow INFO: [Job 207] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.merger). 190722-23:35:38,301 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:35:40,302 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:35:40,489 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190722-23:35:40,492 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190722-23:35:40,494 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190722-23:35:40,497 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190722-23:35:42,303 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 224.61/226.63, Free processors: 10/20. Currently running: * _update_metadata1 * _update_metadata0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:35:58,231 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190722-23:35:58,310 nipype.workflow INFO: [Job 459] Completed (_update_metadata1). 190722-23:35:58,312 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 224.62/226.63, Free processors: 11/20. Currently running: * _update_metadata0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:35:59,395 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190722-23:36:00,312 nipype.workflow INFO: [Job 458] Completed (_update_metadata0). 190722-23:36:00,314 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:36:00,494 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.update_metadata" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata". 190722-23:36:00,499 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190722-23:36:00,500 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190722-23:36:00,501 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190722-23:36:00,501 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190722-23:36:00,502 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190722-23:36:00,502 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190722-23:36:00,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.update_metadata". 190722-23:36:02,313 nipype.workflow INFO: [Job 208] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.update_metadata). 190722-23:36:02,315 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:36:04,315 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:36:04,442 nipype.workflow INFO: [Node] Setting-up "_name_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs/mapflow/_name_surfs0". 190722-23:36:04,447 nipype.workflow INFO: [Node] Running "_name_surfs0" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-23:36:04,451 nipype.workflow INFO: [Node] Finished "_name_surfs0". 190722-23:36:04,452 nipype.workflow INFO: [Job 460] Completed (_name_surfs0). 190722-23:36:04,600 nipype.workflow INFO: [Node] Setting-up "_name_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs/mapflow/_name_surfs1". 190722-23:36:04,627 nipype.workflow INFO: [Node] Running "_name_surfs1" ("niworkflows.interfaces.surf.GiftiNameSource") 190722-23:36:04,631 nipype.workflow INFO: [Node] Finished "_name_surfs1". 190722-23:36:04,631 nipype.workflow INFO: [Job 461] Completed (_name_surfs1). 190722-23:36:06,316 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:36:06,520 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.name_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs". 190722-23:36:06,525 nipype.workflow INFO: [Node] Setting-up "_name_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs/mapflow/_name_surfs0". 190722-23:36:06,526 nipype.workflow INFO: [Node] Cached "_name_surfs0" - collecting precomputed outputs 190722-23:36:06,526 nipype.workflow INFO: [Node] "_name_surfs0" found cached. 190722-23:36:06,526 nipype.workflow INFO: [Node] Setting-up "_name_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs/mapflow/_name_surfs1". 190722-23:36:06,527 nipype.workflow INFO: [Node] Cached "_name_surfs1" - collecting precomputed outputs 190722-23:36:06,527 nipype.workflow INFO: [Node] "_name_surfs1" found cached. 190722-23:36:06,530 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.name_surfs". 190722-23:36:06,530 nipype.workflow INFO: [Job 209] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.name_surfs). 190722-23:36:08,317 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:36:10,318 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:36:10,468 nipype.workflow INFO: [Node] Setting-up "_ds_bold_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs/mapflow/_ds_bold_surfs0". 190722-23:36:10,473 nipype.workflow INFO: [Node] Running "_ds_bold_surfs0" ("fmriprep.interfaces.DerivativesDataSink") 190722-23:36:10,483 nipype.workflow INFO: [Node] Finished "_ds_bold_surfs0". 190722-23:36:10,483 nipype.workflow INFO: [Job 462] Completed (_ds_bold_surfs0). 190722-23:36:10,615 nipype.workflow INFO: [Node] Setting-up "_ds_bold_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs/mapflow/_ds_bold_surfs1". 190722-23:36:10,619 nipype.workflow INFO: [Node] Running "_ds_bold_surfs1" ("fmriprep.interfaces.DerivativesDataSink") 190722-23:36:10,635 nipype.workflow INFO: [Node] Finished "_ds_bold_surfs1". 190722-23:36:10,635 nipype.workflow INFO: [Job 463] Completed (_ds_bold_surfs1). 190722-23:36:12,319 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190722-23:36:12,524 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs". 190722-23:36:12,529 nipype.workflow INFO: [Node] Setting-up "_ds_bold_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs/mapflow/_ds_bold_surfs0". 190722-23:36:12,536 nipype.workflow INFO: [Node] Running "_ds_bold_surfs0" ("fmriprep.interfaces.DerivativesDataSink") 190722-23:36:12,542 nipype.workflow INFO: [Node] Finished "_ds_bold_surfs0". 190722-23:36:12,544 nipype.workflow INFO: [Node] Setting-up "_ds_bold_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs/mapflow/_ds_bold_surfs1". 190722-23:36:12,551 nipype.workflow INFO: [Node] Running "_ds_bold_surfs1" ("fmriprep.interfaces.DerivativesDataSink") 190722-23:36:12,556 nipype.workflow INFO: [Node] Finished "_ds_bold_surfs1". 190722-23:36:12,559 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_surfs". 190722-23:36:12,559 nipype.workflow INFO: [Job 210] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_surfs). 190722-23:36:14,320 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 224.63/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190723-00:07:57,373 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration". 190723-00:07:57,420 nipype.workflow INFO: [Job 179] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration). 190723-00:07:57,426 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:07:57,532 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl_inv_warp". 190723-00:07:57,537 nipype.workflow INFO: [Node] Running "ds_t1_tpl_inv_warp" ("smriprep.interfaces.DerivativesDataSink") 190723-00:07:57,544 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp". 190723-00:07:57,544 nipype.workflow INFO: [Job 180] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp). 190723-00:07:57,636 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl_warp". 190723-00:07:57,641 nipype.workflow INFO: [Node] Running "ds_t1_tpl_warp" ("smriprep.interfaces.DerivativesDataSink") 190723-00:07:57,647 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp". 190723-00:07:57,647 nipype.workflow INFO: [Job 181] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp). 190723-00:07:57,743 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_mask". 190723-00:07:57,747 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_moving". 190723-00:07:57,752 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine/sub-001_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:07:57,756 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-001_T1w_corrected_xform_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:07:57,761 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_seg". 190723-00:07:57,769 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:07:59,425 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 226.03/226.63, Free processors: 17/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190723-00:07:59,536 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms0". 190723-00:07:59,539 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms1". 190723-00:07:59,542 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms2". 190723-00:07:59,544 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:07:59,548 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:07:59,549 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:08:01,422 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 0 jobs ready. Free memory (GB): 225.43/226.63, Free processors: 14/20. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190723-00:08:28,788 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190723-00:08:28,895 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190723-00:08:28,901 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190723-00:08:29,443 nipype.workflow INFO: [Job 464] Completed (_tpl_tpms0). 190723-00:08:29,444 nipype.workflow INFO: [Job 465] Completed (_tpl_tpms1). 190723-00:08:29,445 nipype.workflow INFO: [Job 466] Completed (_tpl_tpms2). 190723-00:08:29,449 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 226.03/226.63, Free processors: 17/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190723-00:08:29,563 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms". 190723-00:08:29,570 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms0". 190723-00:08:29,571 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190723-00:08:29,571 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190723-00:08:29,572 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms1". 190723-00:08:29,574 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190723-00:08:29,574 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190723-00:08:29,575 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms2". 190723-00:08:29,576 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190723-00:08:29,576 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190723-00:08:29,580 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190723-00:08:31,445 nipype.workflow INFO: [Job 241] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms). 190723-00:08:31,451 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 226.03/226.63, Free processors: 17/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190723-00:08:31,559 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_tpms". 190723-00:08:31,565 nipype.workflow INFO: [Node] Running "ds_tpl_tpms" ("smriprep.interfaces.DerivativesDataSink") 190723-00:08:34,590 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms". 190723-00:08:34,591 nipype.workflow INFO: [Job 242] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms). 190723-00:08:34,717 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 226.03/226.63, Free processors: 17/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190723-00:08:44,80 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190723-00:08:44,725 nipype.workflow INFO: [Job 184] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving). 190723-00:08:44,729 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 226.23/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190723-00:08:44,827 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl". 190723-00:08:44,832 nipype.workflow INFO: [Node] Running "ds_t1_tpl" ("smriprep.interfaces.DerivativesDataSink") 190723-00:08:46,903 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl". 190723-00:08:46,903 nipype.workflow INFO: [Job 185] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl). 190723-00:08:47,7 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 226.23/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190723-00:10:04,12 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190723-00:10:05,83 nipype.workflow INFO: [Job 182] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask). 190723-00:10:05,89 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg 190723-00:10:05,194 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_mask". 190723-00:10:05,201 nipype.workflow INFO: [Node] Running "ds_tpl_mask" ("smriprep.interfaces.DerivativesDataSink") 190723-00:10:05,853 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask". 190723-00:10:05,853 nipype.workflow INFO: [Job 183] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask). 190723-00:10:05,975 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/norm_msk". 190723-00:10:05,980 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190723-00:10:07,84 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 226.23/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg 190723-00:10:08,367 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190723-00:10:09,83 nipype.workflow INFO: [Job 186] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk). 190723-00:10:09,86 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg 190723-00:10:09,289 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/norm_rpt". 190723-00:10:09,293 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190723-00:10:11,85 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 226.33/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg 190723-00:10:13,555 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190723-00:10:15,86 nipype.workflow INFO: [Job 243] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg). 190723-00:10:15,89 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 226.53/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt 190723-00:10:15,297 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.outputnode" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/outputnode". 190723-00:10:15,297 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/lut_tpl_seg". 190723-00:10:15,303 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190723-00:10:15,303 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-00:10:15,310 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.outputnode". 190723-00:10:15,709 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190723-00:10:17,87 nipype.workflow INFO: [Job 244] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.outputnode). 190723-00:10:17,88 nipype.workflow INFO: [Job 355] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg). 190723-00:10:17,91 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 226.53/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt 190723-00:10:17,291 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/select_std". 190723-00:10:17,296 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190723-00:10:17,302 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std". 190723-00:10:17,302 nipype.workflow INFO: [Job 245] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std). 190723-00:10:17,512 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/select_std". 190723-00:10:17,517 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190723-00:10:17,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std". 190723-00:10:17,522 nipype.workflow INFO: [Job 275] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std). 190723-00:10:17,726 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/select_std". 190723-00:10:17,731 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190723-00:10:17,736 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std". 190723-00:10:17,736 nipype.workflow INFO: [Job 305] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std). 190723-00:10:17,961 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.carpetplot_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/carpetplot_wf/select_std". 190723-00:10:17,966 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190723-00:10:17,977 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.carpetplot_wf.select_std" (/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/carpetplot_wf/select_std) 190723-00:10:17,980 nipype.workflow ERROR: Node select_std failed to run on host node-g01. 190723-00:10:17,982 nipype.workflow ERROR: Saving crash info to /CALM_BIDS_New_2/derivatives/fmriprep/fmriprep/sub-001/log/20190722-164142_26822436-94fe-4394-9b71-8fd9d0238ee8/crash-20190723-001017-jj02-select_std-bd5aad0d-28d2-40d0-ac20-73b267e822dc.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 316, in _send_procs_to_workers self.procs[jobid].run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 377, in run outputs = self.aggregate_outputs(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 455, in aggregate_outputs predicted_outputs = self._list_outputs() File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/utility.py", line 152, in _list_outputs for k in self._fields} File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/utility.py", line 152, in for k in self._fields} IndexError: list index out of range 190723-00:10:17,983 nipype.workflow INFO: [Job 352] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.carpetplot_wf.select_std). 190723-00:10:18,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_seg". 190723-00:10:18,140 nipype.workflow INFO: [Node] Running "ds_tpl_seg" ("smriprep.interfaces.DerivativesDataSink") 190723-00:10:18,792 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190723-00:10:20,74 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg". 190723-00:10:20,74 nipype.workflow INFO: [Job 356] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg). 190723-00:10:20,173 nipype.workflow INFO: [Job 187] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt). 190723-00:10:20,175 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:10:20,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/ds_t1_2_tpl_report". 190723-00:10:20,296 nipype.workflow INFO: [Node] Running "ds_t1_2_tpl_report" ("smriprep.interfaces.DerivativesDataSink") 190723-00:10:20,304 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report". 190723-00:10:20,305 nipype.workflow INFO: [Job 188] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report). 190723-00:10:20,402 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge_xforms". 190723-00:10:20,425 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190723-00:10:20,433 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms". 190723-00:10:20,434 nipype.workflow INFO: [Job 246] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms). 190723-00:10:20,544 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_merge_tfms". 190723-00:10:20,556 nipype.workflow INFO: [Node] Running "mask_merge_tfms" ("nipype.interfaces.utility.base.Merge") 190723-00:10:20,564 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms". 190723-00:10:20,564 nipype.workflow INFO: [Job 247] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms). 190723-00:10:20,663 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/select_tpl". 190723-00:10:20,667 nipype.workflow INFO: [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function") 190723-00:10:20,674 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl". 190723-00:10:20,674 nipype.workflow INFO: [Job 248] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl). 190723-00:10:20,777 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge_xforms". 190723-00:10:20,784 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190723-00:10:20,789 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms". 190723-00:10:20,789 nipype.workflow INFO: [Job 276] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms). 190723-00:10:20,899 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_merge_tfms". 190723-00:10:20,903 nipype.workflow INFO: [Node] Running "mask_merge_tfms" ("nipype.interfaces.utility.base.Merge") 190723-00:10:20,908 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms". 190723-00:10:20,908 nipype.workflow INFO: [Job 277] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms). 190723-00:10:21,14 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/select_tpl". 190723-00:10:21,18 nipype.workflow INFO: [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function") 190723-00:10:21,26 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl". 190723-00:10:21,26 nipype.workflow INFO: [Job 278] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl). 190723-00:10:21,244 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/merge_xforms". 190723-00:10:21,248 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190723-00:10:21,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms". 190723-00:10:21,254 nipype.workflow INFO: [Job 306] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms). 190723-00:10:21,440 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/mask_merge_tfms". 190723-00:10:21,444 nipype.workflow INFO: [Node] Running "mask_merge_tfms" ("nipype.interfaces.utility.base.Merge") 190723-00:10:21,449 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms". 190723-00:10:21,449 nipype.workflow INFO: [Job 307] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms). 190723-00:10:21,649 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/select_tpl". 190723-00:10:21,654 nipype.workflow INFO: [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function") 190723-00:10:21,672 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl". 190723-00:10:21,672 nipype.workflow INFO: [Job 308] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl). 190723-00:10:22,178 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:10:22,307 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:10:22,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190723-00:10:22,315 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/gen_ref". 190723-00:10:22,315 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:10:22,317 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:10:22,321 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:10:22,324 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref". 190723-00:10:22,327 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref". 190723-00:10:22,551 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref". 190723-00:10:24,177 nipype.workflow INFO: [Job 249] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref). 190723-00:10:24,179 nipype.workflow INFO: [Job 279] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref). 190723-00:10:24,181 nipype.workflow INFO: [Job 309] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref). 190723-00:10:24,187 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:10:24,297 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:10:24,300 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:10:24,303 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:10:24,308 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:10:24,329 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-00:10:24,334 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:10:24,338 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190723-00:10:24,340 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190723-00:10:24,343 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:10:24,347 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:10:24,350 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190723-00:10:24,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/aparc_std_tfm". 190723-00:10:24,355 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190723-00:10:24,355 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190723-00:10:24,360 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190723-00:10:24,363 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/aseg_std_tfm". 190723-00:10:24,363 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:10:24,367 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/mask_std_tfm". 190723-00:10:24,370 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190723-00:10:24,375 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 --transform /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:10:26,177 nipype.workflow INFO: [MultiProc] Running 10 tasks, and 2 jobs ready. Free memory (GB): 214.58/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm 190723-00:10:29,696 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:10:30,178 nipype.workflow INFO: [Job 260] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm). 190723-00:10:30,181 nipype.workflow INFO: [MultiProc] Running 9 tasks, and 4 jobs ready. Free memory (GB): 215.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm 190723-00:10:30,425 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_mask_std". 190723-00:10:30,430 nipype.workflow INFO: [Node] Running "ds_bold_mask_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:30,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std". 190723-00:10:30,549 nipype.workflow INFO: [Job 261] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std). 190723-00:10:30,739 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:10:30,746 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:10:31,405 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:10:32,179 nipype.workflow INFO: [Job 262] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190723-00:10:32,182 nipype.workflow INFO: [MultiProc] Running 9 tasks, and 2 jobs ready. Free memory (GB): 215.58/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm 190723-00:10:32,564 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:10:32,939 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:10:34,180 nipype.workflow INFO: [Job 250] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm). 190723-00:10:34,181 nipype.workflow INFO: [Job 252] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm). 190723-00:10:34,184 nipype.workflow INFO: [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 217.58/226.63, Free processors: 6/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:34,411 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_aparc_std". 190723-00:10:34,416 nipype.workflow INFO: [Node] Running "ds_bold_aparc_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:34,608 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std". 190723-00:10:34,608 nipype.workflow INFO: [Job 251] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std). 190723-00:10:34,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_aseg_std". 190723-00:10:34,816 nipype.workflow INFO: [Node] Running "ds_bold_aseg_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:35,53 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std". 190723-00:10:35,53 nipype.workflow INFO: [Job 253] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std). 190723-00:10:36,182 nipype.workflow INFO: [MultiProc] Running 7 tasks, and 2 jobs ready. Free memory (GB): 217.58/226.63, Free processors: 6/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:38,831 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:10:40,183 nipype.workflow INFO: [Job 290] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm). 190723-00:10:40,186 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 4 jobs ready. Free memory (GB): 218.58/226.63, Free processors: 7/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:40,368 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_mask_std". 190723-00:10:40,383 nipype.workflow INFO: [Node] Running "ds_bold_mask_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:40,542 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std". 190723-00:10:40,543 nipype.workflow INFO: [Job 291] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std). 190723-00:10:40,671 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190723-00:10:40,688 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:10:42,185 nipype.workflow INFO: [MultiProc] Running 7 tasks, and 2 jobs ready. Free memory (GB): 218.38/226.63, Free processors: 6/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:42,652 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:10:43,272 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:10:44,185 nipype.workflow INFO: [Job 320] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm). 190723-00:10:44,186 nipype.workflow INFO: [Job 292] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190723-00:10:44,189 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 219.58/226.63, Free processors: 8/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:44,554 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190723-00:10:44,575 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:10:46,187 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 216.53/226.63, Free processors: 0/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:48,896 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:10:48,942 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:10:50,190 nipype.workflow INFO: [Job 280] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm). 190723-00:10:50,191 nipype.workflow INFO: [Job 282] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm). 190723-00:10:50,194 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 5 jobs ready. Free memory (GB): 218.53/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:50,513 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_aparc_std". 190723-00:10:50,544 nipype.workflow INFO: [Node] Running "ds_bold_aparc_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:51,135 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std". 190723-00:10:51,135 nipype.workflow INFO: [Job 281] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std). 190723-00:10:51,400 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_aseg_std". 190723-00:10:51,409 nipype.workflow INFO: [Node] Running "ds_bold_aseg_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:51,932 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std". 190723-00:10:51,933 nipype.workflow INFO: [Job 283] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std). 190723-00:10:52,200 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:10:52,258 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_mask_std". 190723-00:10:52,264 nipype.workflow INFO: [Node] Running "ds_bold_mask_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:52,513 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std". 190723-00:10:52,513 nipype.workflow INFO: [Job 321] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std). 190723-00:10:52,851 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/pre_mask_dilate". 190723-00:10:52,851 nipype.workflow INFO: [Job 312] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm). 190723-00:10:52,857 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:10:52,861 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 219.33/226.63, Free processors: 2/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:53,229 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_aseg_std". 190723-00:10:53,234 nipype.workflow INFO: [Node] Running "ds_bold_aseg_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:53,966 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std". 190723-00:10:53,966 nipype.workflow INFO: [Job 313] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std). 190723-00:10:54,449 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:10:54,851 nipype.workflow INFO: [Job 310] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm). 190723-00:10:54,854 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 220.33/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:10:55,152 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_aparc_std". 190723-00:10:55,157 nipype.workflow INFO: [Node] Running "ds_bold_aparc_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:10:55,653 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std". 190723-00:10:55,653 nipype.workflow INFO: [Job 311] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std). 190723-00:10:56,332 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:10:56,852 nipype.workflow INFO: [Job 322] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190723-00:10:56,855 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:12:33,582 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190723-00:12:34,907 nipype.workflow INFO: [Job 254] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform). 190723-00:12:34,910 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 223.58/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:12:35,290 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/bold_to_std_transform". 190723-00:12:35,309 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:12:35,358 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-00:12:35,387 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:12:36,910 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 220.15/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:16,82 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge". 190723-00:13:16,928 nipype.workflow INFO: [Job 255] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge). 190723-00:13:16,931 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:17,267 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_std". 190723-00:13:17,272 nipype.workflow INFO: [Node] Running "ds_bold_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:13:40,793 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std". 190723-00:13:40,801 nipype.workflow INFO: [Job 256] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std). 190723-00:13:41,67 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 220.52/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:41,246 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-00:13:41,254 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:13:41,292 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-00:13:43,67 nipype.workflow INFO: [Job 257] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate). 190723-00:13:43,69 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:43,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:13:43,282 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:13:44,97 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-00:13:45,68 nipype.workflow INFO: [Job 258] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref). 190723-00:13:45,70 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:45,369 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/calc_dummy_scans". 190723-00:13:45,375 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190723-00:13:45,390 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans". 190723-00:13:45,390 nipype.workflow INFO: [Job 259] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans). 190723-00:13:45,623 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr". 190723-00:13:45,638 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190723-00:13:45,692 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190723-00:13:45,692 nipype.workflow INFO: [Job 263] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190723-00:13:47,70 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:47,339 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-00:13:47,344 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:13:49,71 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 220.33/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:52,438 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:13:53,72 nipype.workflow INFO: [Job 264] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190723-00:13:53,74 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:53,283 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_std_ref". 190723-00:13:53,288 nipype.workflow INFO: [Node] Running "ds_bold_std_ref" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:13:53,508 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref". 190723-00:13:53,508 nipype.workflow INFO: [Job 265] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref). 190723-00:13:53,711 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-00:13:53,717 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:13:55,74 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 220.33/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:57,147 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:13:59,75 nipype.workflow INFO: [Job 266] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190723-00:13:59,77 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:13:59,359 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-00:13:59,366 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:14:00,718 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:14:01,76 nipype.workflow INFO: [Job 267] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190723-00:14:01,78 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:14:01,275 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-00:14:01,281 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:14:01,527 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:14:03,77 nipype.workflow INFO: [Job 268] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190723-00:14:03,79 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:14:03,305 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-00:14:03,311 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:14:05,79 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 220.33/226.63, Free processors: 3/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:14:07,5 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:14:07,79 nipype.workflow INFO: [Job 269] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190723-00:14:07,81 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:14:07,320 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-00:14:07,325 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:14:07,411 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:14:09,80 nipype.workflow INFO: [Job 270] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190723-00:14:09,83 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:14:09,294 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-00:14:09,300 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-00:14:09,711 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:14:11,81 nipype.workflow INFO: [Job 271] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190723-00:14:11,83 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:14:11,336 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-00:14:11,341 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:14:11,374 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:14:13,82 nipype.workflow INFO: [Job 272] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190723-00:14:13,84 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:14:13,338 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-00:14:13,343 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:14:13,593 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:14:15,83 nipype.workflow INFO: [Job 273] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190723-00:14:15,85 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:14:15,292 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-00:14:15,360 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-00:14:15,632 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:14:17,84 nipype.workflow INFO: [Job 274] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190723-00:14:17,86 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 220.53/226.63, Free processors: 4/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:15:56,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190723-00:15:57,134 nipype.workflow INFO: [Job 284] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform). 190723-00:15:57,137 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 223.58/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:15:57,284 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190723-00:15:57,298 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:15:59,136 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 223.20/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:16:53,73 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge". 190723-00:16:53,166 nipype.workflow INFO: [Job 285] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge). 190723-00:16:53,168 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 223.58/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:16:53,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_std". 190723-00:16:53,380 nipype.workflow INFO: [Node] Running "ds_bold_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:17:55,128 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std". 190723-00:17:55,128 nipype.workflow INFO: [Job 286] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std). 190723-00:17:55,270 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 223.57/226.63, Free processors: 11/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:17:55,275 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190723-00:17:55,362 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:17:55,396 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-00:17:57,270 nipype.workflow INFO: [Job 287] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate). 190723-00:17:57,273 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 223.58/226.63, Free processors: 12/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190723-00:17:57,378 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190723-00:17:57,384 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:17:58,988 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-00:17:59,32 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190723-00:17:59,272 nipype.workflow INFO: [Job 314] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform). 190723-00:17:59,273 nipype.workflow INFO: [Job 288] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref). 190723-00:17:59,277 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:17:59,378 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/calc_dummy_scans". 190723-00:17:59,382 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190723-00:17:59,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans". 190723-00:17:59,387 nipype.workflow INFO: [Job 289] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans). 190723-00:17:59,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr". 190723-00:17:59,509 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190723-00:17:59,608 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190723-00:17:59,608 nipype.workflow INFO: [Job 293] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190723-00:17:59,774 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/merge". 190723-00:17:59,792 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:18:01,277 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:01,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190723-00:18:01,400 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:18:03,278 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 226.05/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:10,386 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:18:11,281 nipype.workflow INFO: [Job 294] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190723-00:18:11,283 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:11,392 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_std_ref". 190723-00:18:11,402 nipype.workflow INFO: [Node] Running "ds_bold_std_ref" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:18:11,930 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref". 190723-00:18:11,930 nipype.workflow INFO: [Job 295] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref). 190723-00:18:12,48 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190723-00:18:12,54 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:18:13,283 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 226.05/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:14,288 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:18:15,283 nipype.workflow INFO: [Job 296] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190723-00:18:15,286 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:15,387 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190723-00:18:15,393 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:18:17,285 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 226.05/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:21,366 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:18:23,287 nipype.workflow INFO: [Job 297] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190723-00:18:23,289 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:23,502 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190723-00:18:23,507 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:18:23,909 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:18:25,288 nipype.workflow INFO: [Job 298] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190723-00:18:25,290 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:25,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190723-00:18:25,476 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:18:27,290 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 226.05/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:32,837 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:18:33,293 nipype.workflow INFO: [Job 299] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190723-00:18:33,296 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:33,412 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190723-00:18:33,417 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:18:33,639 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:18:35,294 nipype.workflow INFO: [Job 300] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190723-00:18:35,297 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:35,534 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190723-00:18:35,540 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190723-00:18:36,111 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:18:37,295 nipype.workflow INFO: [Job 301] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190723-00:18:37,298 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:37,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190723-00:18:37,509 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:18:37,584 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:18:39,296 nipype.workflow INFO: [Job 302] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190723-00:18:39,298 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:39,474 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190723-00:18:39,479 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:18:39,848 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:18:41,298 nipype.workflow INFO: [Job 303] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190723-00:18:41,303 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:41,543 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190723-00:18:41,779 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190723-00:18:42,493 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:18:43,298 nipype.workflow INFO: [Job 304] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190723-00:18:43,300 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.25/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190723-00:18:54,984 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge". 190723-00:18:55,305 nipype.workflow INFO: [Job 315] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge). 190723-00:18:55,308 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:18:55,411 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_std". 190723-00:18:55,415 nipype.workflow INFO: [Node] Running "ds_bold_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:19:49,498 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std". 190723-00:19:49,498 nipype.workflow INFO: [Job 316] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std). 190723-00:19:49,637 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.62/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate 190723-00:19:49,781 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNIPediatricAsym/validate". 190723-00:19:49,787 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:19:49,815 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-00:19:51,637 nipype.workflow INFO: [Job 317] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate). 190723-00:19:51,640 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:19:51,742 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNIPediatricAsym/gen_ref". 190723-00:19:51,747 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:19:53,402 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-00:19:53,639 nipype.workflow INFO: [Job 318] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref). 190723-00:19:53,644 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:19:53,750 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNIPediatricAsym/calc_dummy_scans". 190723-00:19:53,755 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190723-00:19:53,760 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans". 190723-00:19:53,760 nipype.workflow INFO: [Job 319] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans). 190723-00:19:53,858 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/check_hdr". 190723-00:19:53,863 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190723-00:19:53,924 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190723-00:19:53,924 nipype.workflow INFO: [Job 323] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190723-00:19:55,644 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:19:55,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/n4_correct". 190723-00:19:55,772 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNIPediatricAsym/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:19:57,642 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct 190723-00:20:05,352 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:20:05,648 nipype.workflow INFO: [Job 324] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190723-00:20:05,653 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:20:05,779 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_std_ref". 190723-00:20:05,779 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.outputnode" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/outputnode". 190723-00:20:05,785 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-00:20:05,790 nipype.workflow INFO: [Node] Running "ds_bold_std_ref" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:20:05,793 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.outputnode". 190723-00:20:06,220 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref". 190723-00:20:06,220 nipype.workflow INFO: [Job 342] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref). 190723-00:20:06,323 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass". 190723-00:20:06,333 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:20:07,649 nipype.workflow INFO: [Job 325] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.outputnode). 190723-00:20:07,655 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass 190723-00:20:07,768 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/select_std". 190723-00:20:07,774 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190723-00:20:07,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.select_std". 190723-00:20:07,780 nipype.workflow INFO: [Job 326] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.select_std). 190723-00:20:08,343 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:20:09,650 nipype.workflow INFO: [Job 343] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190723-00:20:09,656 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:20:09,770 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.rm_nonsteady" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/rm_nonsteady". 190723-00:20:09,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_dilate". 190723-00:20:09,776 nipype.workflow INFO: [Node] Running "rm_nonsteady" ("nipype.interfaces.utility.wrappers.Function") 190723-00:20:09,778 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:20:09,782 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.rm_nonsteady". 190723-00:20:11,653 nipype.workflow INFO: [Job 327] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.rm_nonsteady). 190723-00:20:11,659 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate 190723-00:20:11,774 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/calc_bold_mean". 190723-00:20:11,777 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/calc_median_val". 190723-00:20:11,780 nipype.workflow INFO: [Node] Running "calc_bold_mean" ("nipype.interfaces.fsl.maths.MeanImage"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge/vol0000_xform-00000_merged.nii.gz -Tmean /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/calc_bold_mean/vol0000_xform-00000_merged_mean.nii.gz 190723-00:20:11,786 nipype.workflow INFO: [Node] Running "calc_median_val" ("nipype.interfaces.fsl.utils.ImageStats"), a CommandLine Interface with command: fslstats /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge/vol0000_xform-00000_merged.nii.gz -k /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -p 50 190723-00:20:13,658 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 226.03/226.63, Free processors: 17/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate 190723-00:20:17,127 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:20:17,659 nipype.workflow INFO: [Job 344] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190723-00:20:17,664 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 226.23/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean 190723-00:20:17,780 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_mask". 190723-00:20:17,792 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:20:18,106 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:20:19,661 nipype.workflow INFO: [Job 345] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190723-00:20:19,666 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 226.23/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean 190723-00:20:19,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/unifize". 190723-00:20:20,575 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:20:21,662 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 226.03/226.63, Free processors: 17/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean 190723-00:20:21,707 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean". 190723-00:20:23,664 nipype.workflow INFO: [Job 328] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean). 190723-00:20:23,670 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 226.23/226.63, Free processors: 18/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val 190723-00:20:27,137 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val". 190723-00:20:27,668 nipype.workflow INFO: [Job 329] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val). 190723-00:20:27,674 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize 190723-00:20:27,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.getusans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/getusans". 190723-00:20:27,838 nipype.workflow INFO: [Node] Running "getusans" ("nipype.interfaces.utility.wrappers.Function") 190723-00:20:27,870 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.getusans". 190723-00:20:28,719 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:20:29,669 nipype.workflow INFO: [Job 346] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190723-00:20:29,672 nipype.workflow INFO: [Job 330] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.getusans). 190723-00:20:29,676 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:20:29,790 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/smooth". 190723-00:20:29,792 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/fixhdr_unifize". 190723-00:20:29,799 nipype.workflow INFO: [Node] Running "smooth" ("nipype.interfaces.fsl.preprocess.SUSAN"), a CommandLine Interface with command: susan /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge/vol0000_xform-00000_merged.nii.gz 295.2731325000 2.5479654009 3 1 1 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/calc_bold_mean/vol0000_xform-00000_merged_mean.nii.gz 393.6975100000 /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/smooth/vol0000_xform-00000_merged_smooth.nii.gz 190723-00:20:29,804 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:20:29,952 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:20:31,672 nipype.workflow INFO: [Job 347] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190723-00:20:31,678 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth 190723-00:20:31,794 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_second_pass". 190723-00:20:31,802 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-00:20:32,507 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:20:33,674 nipype.workflow INFO: [Job 348] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190723-00:20:33,679 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth 190723-00:20:33,800 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/fixhdr_skullstrip2". 190723-00:20:33,813 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:20:33,914 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:20:35,675 nipype.workflow INFO: [Job 349] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190723-00:20:35,681 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth 190723-00:20:35,793 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/combine_masks". 190723-00:20:35,801 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:20:36,4 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:20:37,678 nipype.workflow INFO: [Job 350] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190723-00:20:37,684 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth 190723-00:20:37,800 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/apply_mask". 190723-00:20:37,808 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/apply_mask/uni_xform_masked.nii.gz 190723-00:20:38,87 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:20:39,680 nipype.workflow INFO: [Job 351] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190723-00:20:39,686 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth 190723-00:28:54,284 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth". 190723-00:28:56,170 nipype.workflow INFO: [Job 331] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth). 190723-00:28:56,175 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:28:56,286 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.melodic" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/melodic". 190723-00:28:56,296 nipype.workflow INFO: [Node] Running "melodic" ("nipype.interfaces.fsl.model.MELODIC"), a CommandLine Interface with command: melodic -i /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/smooth/vol0000_xform-00000_merged_smooth.nii.gz -d -200 -m /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --mmthresh=0.500000 --nobet -o /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/melodic --Ostats --tr=2.000000 190723-00:28:58,175 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.melodic 190723-00:50:11,929 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.melodic". 190723-00:50:13,433 nipype.workflow INFO: [Job 332] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.melodic). 190723-00:50:13,439 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:50:13,570 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/ica_aroma". 190723-00:50:13,580 nipype.workflow INFO: [Node] Running "ica_aroma" ("niworkflows.interfaces.segmentation.ICA_AROMARPT"), a CommandLine Interface with command: ICA_AROMA.py -tr 2.000 -den nonaggr -i /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/smooth/vol0000_xform-00000_merged_smooth.nii.gz -m /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -meldir /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/melodic -mc /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/normalize_motion/motion_params.txt -o /CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/ica_aroma/out 190723-00:50:15,438 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma 190723-00:54:07,344 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma". 190723-00:54:07,664 nipype.workflow INFO: [Job 333] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma). 190723-00:54:07,670 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:54:07,780 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ds_report_ica_aroma" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/ds_report_ica_aroma". 190723-00:54:08,20 nipype.workflow INFO: [Node] Running "ds_report_ica_aroma" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:54:08,33 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ds_report_ica_aroma". 190723-00:54:08,33 nipype.workflow INFO: [Job 334] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ds_report_ica_aroma). 190723-00:54:08,149 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.add_nonsteady" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/add_nonsteady". 190723-00:54:08,151 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma_confound_extraction" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/ica_aroma_confound_extraction". 190723-00:54:08,156 nipype.workflow INFO: [Node] Running "add_nonsteady" ("nipype.interfaces.utility.wrappers.Function") 190723-00:54:08,158 nipype.workflow INFO: [Node] Running "ica_aroma_confound_extraction" ("fmriprep.interfaces.confounds.ICAConfounds") 190723-00:54:08,166 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.add_nonsteady". 190723-00:54:08,236 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma_confound_extraction". 190723-00:54:09,665 nipype.workflow INFO: [Job 335] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.add_nonsteady). 190723-00:54:09,668 nipype.workflow INFO: [Job 339] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma_confound_extraction). 190723-00:54:09,674 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:54:09,787 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_aroma_std". 190723-00:54:09,792 nipype.workflow INFO: [Node] Running "ds_aroma_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:55:04,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std". 190723-00:55:04,194 nipype.workflow INFO: [Job 336] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std). 190723-00:55:04,315 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_aroma_std". 190723-00:55:04,319 nipype.workflow INFO: [Node] Running "ds_aroma_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:55:54,377 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std". 190723-00:55:54,377 nipype.workflow INFO: [Job 337] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std). 190723-00:55:54,496 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_aroma_std". 190723-00:55:54,501 nipype.workflow INFO: [Node] Running "ds_aroma_std" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:56:44,979 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std". 190723-00:56:44,980 nipype.workflow INFO: [Job 338] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std). 190723-00:56:45,158 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_melodic_mix" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_melodic_mix". 190723-00:56:45,167 nipype.workflow INFO: [Node] Running "ds_melodic_mix" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:56:45,315 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_melodic_mix". 190723-00:56:45,315 nipype.workflow INFO: [Job 340] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_melodic_mix). 190723-00:56:45,517 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_noise_ics" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_aroma_noise_ics". 190723-00:56:45,589 nipype.workflow INFO: [Node] Running "ds_aroma_noise_ics" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:56:45,600 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_noise_ics". 190723-00:56:45,600 nipype.workflow INFO: [Job 341] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_noise_ics). 190723-00:56:45,760 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 226.43/226.63, Free processors: 19/20. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.aroma_confounds 190723-00:56:45,908 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.aroma_confounds" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/aroma_confounds". 190723-00:56:45,916 nipype.workflow INFO: [Node] Running "aroma_confounds" ("nipype.interfaces.utility.wrappers.Function") 190723-00:56:45,969 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.aroma_confounds". 190723-00:56:47,762 nipype.workflow INFO: [Job 394] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.aroma_confounds). 190723-00:56:47,768 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:56:48,0 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_confounds" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_confounds". 190723-00:56:48,177 nipype.workflow INFO: [Node] Running "ds_confounds" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:56:48,234 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_confounds". 190723-00:56:48,234 nipype.workflow INFO: [Job 395] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_confounds). 190723-00:56:48,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.summary" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/summary". 190723-00:56:48,366 nipype.workflow INFO: [Node] Running "summary" ("fmriprep.interfaces.reports.FunctionalSummary") 190723-00:56:48,374 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.summary". 190723-00:56:48,374 nipype.workflow INFO: [Job 396] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.summary). 190723-00:56:49,767 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 226.63/226.63, Free processors: 20/20. 190723-00:56:49,904 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_summary" in "/CALM_BIDS_New_2/derivatives/fmriprepwork/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ds_report_summary". 190723-00:56:49,909 nipype.workflow INFO: [Node] Running "ds_report_summary" ("fmriprep.interfaces.DerivativesDataSink") 190723-00:56:49,917 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_summary". 190723-00:56:49,917 nipype.workflow INFO: [Job 397] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_summary). /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nitime/utils.py:980: FutureWarning: Conversion of the second argument of issubdtype from `complex` to `np.complexfloating` is deprecated. In future, it will be treated as `np.complex128 == np.dtype(complex).type`. complex_result = (np.issubdtype(in1.dtype, np.complex) or /usr/local/miniconda/lib/python3.7/site-packages/nitime/utils.py:981: FutureWarning: Conversion of the second argument of issubdtype from `complex` to `np.complexfloating` is deprecated. In future, it will be treated as `np.complex128 == np.dtype(complex).type`. np.issubdtype(in2.dtype, np.complex)) /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/niworkflows/viz/utils.py:513: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. maximum_intensity_data = data[inds] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] Preprocessing did not finish successfully. Errors occurred while processing data from participants: 001 (1). Check the HTML reports for details.