NDARINVGBXJFCXY /data/jux/mackey_group/public_data/ABCD/bids_release2_site20 1: [ERR] We were unable to read this file. Make sure it contains data (file size > 0 kB) and is not corrupted, incorrectly named, or incorrectly symlinked. (code: 44 - FILE_READ) ./sub-NDARINVGBXJFCXY/anat/sub-NDARINVGBXJFCXY_run-01_T1w.nii.gz ./sub-NDARINVGBXJFCXY/dwi/sub-NDARINVGBXJFCXY_run-01_dwi.nii.gz ./sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-dMRI_dir-AP_run-04_epi.nii.gz ./sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-dMRI_dir-PA_run-03_epi.nii.gz ./sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-02_epi.nii.gz ./sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-06_epi.nii.gz ./sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-08_epi.nii.gz ./sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-10_epi.nii.gz ./sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-12_epi.nii.gz ./sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-PA_run-01_epi.nii.gz ... and 8 more files having this issue (Use --verbose to see them all). Please visit https://neurostars.org/search?q=FILE_READ for existing conversations about this issue. Summary: Available Tasks: Available Modalities: 29206 Files, 498.75GB rest T1w 698 - Subjects TODO: full task name for rest dwi 1 - Session bold events fieldmap If you have any questions, please post on https://neurostars.org/tags/bids. Making sure the input data is BIDS compliant (warnings can be ignored in most cases). 190819-23:58:14,402 nipype.workflow IMPORTANT: Running fMRIPREP version 1.4.1: * BIDS dataset path: /mnt. * Participant list: ['NDARINVGBXJFCXY']. * Run identifier: 20190819-235804_16dfc42b-5d0a-4856-b606-d418faa64f77. 190819-23:58:16,875 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-01_bold.nii.gz" (0.14 GB / 383 TRs). Memory resampled/largemem=0.56/1.10 GB. 190819-23:58:16,958 nipype.workflow IMPORTANT: No single-band-reference found for sub-NDARINVGBXJFCXY_task-rest_run-01_bold.nii.gz 190819-23:58:20,248 nipype.workflow IMPORTANT: SDC: fieldmap estimation of type "epi" intended for /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-01_bold.nii.gz found. 190819-23:58:21,95 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190819-23:58:23,402 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-02_bold.nii.gz" (0.14 GB / 383 TRs). Memory resampled/largemem=0.56/1.10 GB. 190819-23:58:23,485 nipype.workflow IMPORTANT: No single-band-reference found for sub-NDARINVGBXJFCXY_task-rest_run-02_bold.nii.gz 190819-23:58:24,199 nipype.workflow IMPORTANT: SDC: fieldmap estimation of type "epi" intended for /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-02_bold.nii.gz found. 190819-23:58:25,152 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190819-23:58:27,534 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-03_bold.nii.gz" (0.14 GB / 383 TRs). Memory resampled/largemem=0.57/1.11 GB. 190819-23:58:27,612 nipype.workflow IMPORTANT: No single-band-reference found for sub-NDARINVGBXJFCXY_task-rest_run-03_bold.nii.gz 190819-23:58:28,327 nipype.workflow IMPORTANT: SDC: fieldmap estimation of type "epi" intended for /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-03_bold.nii.gz found. 190819-23:58:29,170 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190819-23:58:31,507 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-04_bold.nii.gz" (0.14 GB / 383 TRs). Memory resampled/largemem=0.56/1.10 GB. 190819-23:58:31,586 nipype.workflow IMPORTANT: No single-band-reference found for sub-NDARINVGBXJFCXY_task-rest_run-04_bold.nii.gz 190819-23:58:32,303 nipype.workflow IMPORTANT: SDC: fieldmap estimation of type "epi" intended for /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-04_bold.nii.gz found. 190819-23:58:33,148 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190819-23:58:37,420 nipype.workflow IMPORTANT: Works derived from this fMRIPrep execution should include the following boilerplate: Results included in this manuscript come from preprocessing performed using *fMRIPrep* 1.4.1 (@fmriprep1; @fmriprep2; RRID:SCR_016216), which is based on *Nipype* 1.2.0 (@nipype1; @nipype2; RRID:SCR_002502). Anatomical data preprocessing : The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU) with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.2.0 [@ants, RRID:SCR_004757], and used as T1w-reference throughout the workflow. The T1w-reference was then skull-stripped with a *Nipype* implementation of the `antsBrainExtraction.sh` workflow (from ANTs), using OASIS30ANTs as target template. Brain tissue segmentation of cerebrospinal fluid (CSF), white-matter (WM) and gray-matter (GM) was performed on the brain-extracted T1w using `fast` [FSL 5.0.9, RRID:SCR_002823, @fsl_fast]. Brain surfaces were reconstructed using `recon-all` [FreeSurfer 6.0.1, RRID:SCR_001847, @fs_reconall], and the brain mask estimated previously was refined with a custom variation of the method to reconcile ANTs-derived and FreeSurfer-derived segmentations of the cortical gray-matter of Mindboggle [RRID:SCR_002438, @mindboggle]. Volume-based spatial normalization to one standard space (MNI152NLin6Asym) was performed through nonlinear registration with `antsRegistration` (ANTs 2.2.0), using brain-extracted versions of both T1w reference and the T1w template. The following template was selected for spatial normalization: *FSL's MNI ICBM 152 non-linear 6th Generation Asymmetric Average Brain Stereotaxic Registration Model* [@mni152nlin6asym, RRID:SCR_002823; TemplateFlow ID: MNI152NLin6Asym]. Functional data preprocessing : For each of the 4 BOLD runs found per subject (across all tasks and sessions), the following preprocessing was performed. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. A deformation field to correct for susceptibility distortions was estimated based on two echo-planar imaging (EPI) references with opposing phase-encoding directions, using `3dQwarp` @afni (AFNI 20160207). Based on the estimated susceptibility distortion, an unwarped BOLD reference was calculated for a more accurate co-registration with the anatomical reference. The BOLD reference was then co-registered to the T1w reference using `bbregister` (FreeSurfer) which implements boundary-based registration [@bbr]. Co-registration was configured with nine degrees of freedom to account for distortions remaining in the BOLD reference. Head-motion parameters with respect to the BOLD reference (transformation matrices, and six corresponding rotation and translation parameters) are estimated before any spatiotemporal filtering using `mcflirt` [FSL 5.0.9, @mcflirt]. The BOLD time-series, were resampled to surfaces on the following spaces: *fsaverage*. The BOLD time-series (including slice-timing correction when applied) were resampled onto their original, native space by applying a single, composite transform to correct for head-motion and susceptibility distortions. These resampled BOLD time-series will be referred to as *preprocessed BOLD in original space*, or just *preprocessed BOLD*. The BOLD time-series were resampled into standard space, generating a *preprocessed BOLD run in ['MNI152NLin6Asym'] space*. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. Several confounding time-series were calculated based on the *preprocessed BOLD*: framewise displacement (FD), DVARS and three region-wise global signals. FD and DVARS are calculated for each functional run, both using their implementations in *Nipype* [following the definitions by @power_fd_dvars]. The three global signals are extracted within the CSF, the WM, and the whole-brain masks. Additionally, a set of physiological regressors were extracted to allow for component-based noise correction [*CompCor*, @compcor]. Principal components are estimated after high-pass filtering the *preprocessed BOLD* time-series (using a discrete cosine filter with 128s cut-off) for the two *CompCor* variants: temporal (tCompCor) and anatomical (aCompCor). tCompCor components are then calculated from the top 5% variable voxels within a mask covering the subcortical regions. This subcortical mask is obtained by heavily eroding the brain mask, which ensures it does not include cortical GM regions. For aCompCor, components are calculated within the intersection of the aforementioned mask and the union of CSF and WM masks calculated in T1w space, after their projection to the native space of each functional run (using the inverse BOLD-to-T1w transformation). Components are also calculated separately within the WM and CSF masks. For each CompCor decomposition, the *k* components with the largest singular values are retained, such that the retained components' time series are sufficient to explain 50 percent of variance across the nuisance mask (CSF, WM, combined, or temporal). The remaining components are dropped from consideration. The head-motion estimates calculated in the correction step were also placed within the corresponding confounds file. The confound time series derived from head motion estimates and global signals were expanded with the inclusion of temporal derivatives and quadratic terms for each [@confounds_satterthwaite_2013]. Frames that exceeded a threshold of 0.5 mm FD or 1.5 standardised DVARS were annotated as motion outliers. All resamplings can be performed with *a single interpolation step* by composing all the pertinent transformations (i.e. head-motion transform matrices, susceptibility distortion correction when available, and co-registrations to anatomical and output spaces). Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs), configured with Lanczos interpolation to minimize the smoothing effects of other kernels [@lanczos]. Non-gridded (surface) resamplings were performed using `mri_vol2surf` (FreeSurfer). Many internal operations of *fMRIPrep* use *Nilearn* 0.5.2 [@nilearn, RRID:SCR_001362], mostly within the functional processing workflow. For more details of the pipeline, see [the section corresponding to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation"). ### References /usr/local/miniconda/lib/python3.7/site-packages/bids/layout/layout.py:62: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['suffix'] instead of .suffix. % (attr, attr)) 190819-23:59:08,124 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.func_derivatives_wf.raw_sources" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/func_derivatives_wf/raw_sources". 190819-23:59:08,126 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190819-23:59:08,162 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.func_derivatives_wf.raw_sources" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/func_derivatives_wf/raw_sources". 190819-23:59:08,163 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190819-23:59:08,166 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.func_derivatives_wf.raw_sources" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/func_derivatives_wf/raw_sources". 190819-23:59:08,167 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190819-23:59:08,186 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.func_derivatives_wf.raw_sources". 190819-23:59:08,194 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.func_derivatives_wf.raw_sources". 190819-23:59:08,196 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.func_derivatives_wf.raw_sources". 190819-23:59:08,843 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split". 190819-23:59:08,848 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split". 190819-23:59:08,853 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split". 190819-23:59:08,866 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split". 190819-23:59:08,872 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split". 190819-23:59:08,880 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0". 190819-23:59:08,882 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-02_epi.nii.gz -t 190819-23:59:08,885 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0". 190819-23:59:08,886 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-PA_run-01_epi.nii.gz -t 190819-23:59:08,890 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0". 190819-23:59:08,891 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-PA_run-01_epi.nii.gz -t 190819-23:59:08,895 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0". 190819-23:59:08,896 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-PA_run-05_epi.nii.gz -t 190819-23:59:08,904 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split". 190819-23:59:08,906 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0". 190819-23:59:08,910 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0". 190819-23:59:08,911 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-02_epi.nii.gz -t 190819-23:59:08,932 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-06_epi.nii.gz -t 190819-23:59:09,967 nipype.workflow INFO: [Node] Finished "_split0". 190819-23:59:09,968 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split". 190819-23:59:09,976 nipype.workflow INFO: [Node] Finished "_split0". 190819-23:59:09,977 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split". 190819-23:59:09,981 nipype.workflow INFO: [Node] Finished "_split0". 190819-23:59:09,984 nipype.workflow INFO: [Node] Finished "_split0". 190819-23:59:09,985 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split". 190819-23:59:09,988 nipype.workflow INFO: [Node] Finished "_split0". 190819-23:59:09,989 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split". 190819-23:59:09,992 nipype.workflow INFO: [Node] Finished "_split0". 190819-23:59:09,993 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split". 190819-23:59:10,3 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split". 190819-23:59:12,359 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.func_derivatives_wf.raw_sources" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/func_derivatives_wf/raw_sources". 190819-23:59:12,360 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190819-23:59:12,362 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.func_derivatives_wf.raw_sources". 190819-23:59:12,369 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split". 190819-23:59:12,371 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0". 190819-23:59:12,373 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-AP_run-06_epi.nii.gz -t 190819-23:59:12,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split". 190819-23:59:12,378 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0". 190819-23:59:12,379 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/fmap/sub-NDARINVGBXJFCXY_acq-fMRI_dir-PA_run-05_epi.nii.gz -t 190819-23:59:13,637 nipype.workflow INFO: [Node] Finished "_split0". 190819-23:59:13,638 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split". 190819-23:59:13,653 nipype.workflow INFO: [Node] Finished "_split0". 190819-23:59:13,654 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split". 190819-23:59:14,254 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/validate". 190819-23:59:14,259 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/validate". 190819-23:59:14,263 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/validate". 190819-23:59:14,307 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190819-23:59:14,308 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190819-23:59:14,265 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190819-23:59:14,554 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.validate". 190819-23:59:14,493 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.validate". 190819-23:59:14,560 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.validate". 190819-23:59:18,143 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_split". 190819-23:59:18,144 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-01_bold.nii.gz -t 190819-23:59:20,88 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref". 190819-23:59:20,89 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190819-23:59:20,143 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_split". 190819-23:59:20,144 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-02_bold.nii.gz -t 190819-23:59:21,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge". 190819-23:59:21,887 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge". 190819-23:59:21,908 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge". 190819-23:59:22,46 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 190819-23:59:22,58 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 190819-23:59:22,94 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 190819-23:59:22,627 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge". 190819-23:59:22,631 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge". 190819-23:59:22,641 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge". 190819-23:59:22,812 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 190819-23:59:22,822 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 190819-23:59:22,842 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 190819-23:59:23,196 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge". 190819-23:59:23,216 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge". 190819-23:59:23,240 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge". 190819-23:59:23,508 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/validate". 190819-23:59:23,549 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190819-23:59:23,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.validate". 190819-23:59:23,761 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge". 190819-23:59:23,766 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge". 190819-23:59:23,768 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge". 190819-23:59:24,785 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.gen_ref". 190819-23:59:24,857 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge". 190819-23:59:24,866 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge". 190819-23:59:24,938 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 190819-23:59:24,942 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 190819-23:59:25,439 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge". 190819-23:59:25,440 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge". 190819-23:59:25,760 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref". 190819-23:59:25,761 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190819-23:59:25,763 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_split". 190819-23:59:25,764 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-03_bold.nii.gz -t 190819-23:59:26,637 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref". 190819-23:59:26,638 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190819-23:59:26,651 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_split" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_split". 190819-23:59:26,652 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-04_bold.nii.gz -t 190819-23:59:27,902 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref". 190819-23:59:27,903 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190819-23:59:27,913 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl". 190819-23:59:27,915 nipype.workflow INFO: [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1 190819-23:59:27,924 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl". 190819-23:59:27,925 nipype.workflow INFO: [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1 190819-23:59:29,592 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.gen_ref". 190819-23:59:29,661 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.mcflirt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/mcflirt". 190819-23:59:29,662 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-01_bold.nii.gz -out /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/mcflirt/sub-NDARINVGBXJFCXY_task-rest_run-01_bold_mcf.nii.gz -reffile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190819-23:59:31,95 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.gen_ref". 190819-23:59:32,609 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.gen_ref". 190819-23:59:33,4 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.bidssrc" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/bidssrc". 190819-23:59:33,6 nipype.workflow INFO: [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber") 190819-23:59:33,6 nipype.interface WARNING: No "t2w" images found for sub- 190819-23:59:33,6 nipype.interface WARNING: No "flair" images found for sub- 190819-23:59:33,6 nipype.interface WARNING: No "sbref" images found for sub- 190819-23:59:33,6 nipype.interface WARNING: No "roi" images found for sub- 190819-23:59:33,19 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.bidssrc". 190819-23:59:35,856 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.mcflirt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_hmc_wf/mcflirt". 190819-23:59:35,858 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-02_bold.nii.gz -out /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_hmc_wf/mcflirt/sub-NDARINVGBXJFCXY_task-rest_run-02_bold_mcf.nii.gz -reffile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190819-23:59:37,421 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.mcflirt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_hmc_wf/mcflirt". 190819-23:59:37,423 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-03_bold.nii.gz -out /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_hmc_wf/mcflirt/sub-NDARINVGBXJFCXY_task-rest_run-03_bold_mcf.nii.gz -reffile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190819-23:59:39,218 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.mcflirt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_hmc_wf/mcflirt". 190819-23:59:39,220 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-NDARINVGBXJFCXY/func/sub-NDARINVGBXJFCXY_task-rest_run-04_bold.nii.gz -out /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_hmc_wf/mcflirt/sub-NDARINVGBXJFCXY_task-rest_run-04_bold_mcf.nii.gz -reffile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190819-23:59:41,157 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions". 190819-23:59:41,159 nipype.workflow INFO: [Node] Running "t1_template_dimensions" ("niworkflows.interfaces.images.TemplateDimensions") 190819-23:59:41,903 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions". 190819-23:59:43,162 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.bids_info" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/bids_info". 190819-23:59:43,163 nipype.workflow INFO: [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo") 190819-23:59:44,301 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl". 190819-23:59:49,343 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources". 190819-23:59:49,344 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190819-23:59:49,346 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources". 190819-23:59:51,386 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_derivatives_wf/t1_name". 190819-23:59:51,387 nipype.workflow INFO: [Node] Running "t1_name" ("nipype.interfaces.utility.wrappers.Function") 190819-23:59:51,389 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.t1_name". 190819-23:59:51,407 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_template_wf.t1_conform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_template_wf/t1_conform". 190819-23:59:51,409 nipype.workflow INFO: [Node] Setting-up "_t1_conform0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0". 190819-23:59:51,410 nipype.workflow INFO: [Node] Running "_t1_conform0" ("niworkflows.interfaces.images.Conform") 190819-23:59:51,531 nipype.workflow INFO: [Node] Finished "_t1_conform0". 190819-23:59:51,533 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_template_wf.t1_conform". 190819-23:59:55,384 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_template_wf.get1st" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_template_wf/get1st". 190819-23:59:55,386 nipype.workflow INFO: [Node] Running "get1st" ("nipype.interfaces.utility.base.Select") 190819-23:59:55,388 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_template_wf.get1st". 190820-00:00:01,458 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/fov_check". 190820-00:00:01,459 nipype.workflow INFO: [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function") 190820-00:00:01,477 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/recon_config". 190820-00:00:01,478 nipype.workflow INFO: [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs") 190820-00:00:01,555 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.recon_config". 190820-00:00:03,566 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.fov_check". 190820-00:00:05,342 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/truncate_images". 190820-00:00:05,345 nipype.workflow INFO: [Node] Setting-up "_truncate_images0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0". 190820-00:00:05,346 nipype.workflow INFO: [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_maths.nii.gz TruncateImageIntensity /mnt/sub-NDARINVGBXJFCXY/anat/sub-NDARINVGBXJFCXY_run-01_T1w.nii.gz 0.01 0.999 256 190820-00:00:37,801 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.bids_info". 190820-00:00:44,741 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl". 190820-00:00:47,983 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl". 190820-00:00:47,984 nipype.workflow INFO: [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge") 190820-00:00:47,986 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl". 190820-00:01:14,319 nipype.workflow INFO: [Node] Finished "_truncate_images0". 190820-00:01:14,335 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.truncate_images". 190820-00:03:39,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_split". 190820-00:03:41,879 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_split". 190820-00:03:46,97 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_split". 190820-00:03:47,147 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_split". 190820-00:03:49,103 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:03:49,105 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:04:23,747 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:04:25,112 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:04:25,115 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:04:40,783 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:04:43,103 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:04:43,105 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:05:05,839 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:05:07,114 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:05:07,116 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:05:08,851 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:05:12,129 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:05:12,178 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:05:46,174 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:05:47,154 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:05:47,156 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz 190820-00:06:12,922 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:06:15,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:06:15,161 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 190820-00:06:22,586 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:06:25,169 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:06:25,171 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 190820-00:06:35,263 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:06:37,180 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:06:37,181 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 190820-00:06:37,721 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:06:39,179 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:06:39,181 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 190820-00:06:52,806 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:06:55,190 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:06:55,191 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:06:55,397 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:06:57,186 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:06:57,187 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:06:58,170 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:06:59,211 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:06:59,213 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:06:59,351 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:07:01,217 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:07:01,218 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 190820-00:07:01,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:07:03,186 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:07:03,188 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:07:03,709 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:07:05,229 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:07:05,232 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:07:17,784 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:07:19,231 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:07:19,232 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:07:40,517 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:07:43,213 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:07:43,215 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:07:44,953 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:07:48,179 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:07:48,181 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:08:21,26 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:08:23,103 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:08:23,105 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz 190820-00:08:48,218 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:08:49,262 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:08:49,264 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 190820-00:08:56,392 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:08:57,267 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:08:57,269 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 190820-00:09:07,346 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:09:09,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:09:09,279 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 190820-00:09:09,772 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:09:11,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:09:11,279 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 190820-00:09:24,89 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:09:25,282 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:09:25,283 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:09:25,495 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:09:26,310 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.mcflirt". 190820-00:09:27,123 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:09:27,125 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:09:27,133 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.normalize_motion" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/normalize_motion". 190820-00:09:27,134 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190820-00:09:27,142 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.normalize_motion". 190820-00:09:27,887 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:09:29,151 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:09:29,152 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:09:29,237 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:09:29,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.mcflirt". 190820-00:09:29,778 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.fdisp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/fdisp". 190820-00:09:29,779 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190820-00:09:29,786 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.fdisp". 190820-00:09:30,986 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:09:30,988 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 190820-00:09:31,94 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.fsl2itk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/fsl2itk". 190820-00:09:31,103 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.normalize_motion" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_hmc_wf/normalize_motion". 190820-00:09:31,104 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190820-00:09:31,112 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.normalize_motion". 190820-00:09:31,139 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190820-00:09:31,418 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:09:33,196 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:09:33,198 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:09:33,795 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:09:34,143 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.mcflirt". 190820-00:09:34,246 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.fdisp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/fdisp". 190820-00:09:34,248 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190820-00:09:34,254 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.fdisp". 190820-00:09:35,157 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.normalize_motion" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_hmc_wf/normalize_motion". 190820-00:09:35,158 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190820-00:09:35,165 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.normalize_motion". 190820-00:09:36,659 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.mcflirt". 190820-00:09:37,919 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.fdisp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/fdisp". 190820-00:09:37,920 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190820-00:09:37,928 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.fdisp". 190820-00:09:39,216 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.normalize_motion" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_hmc_wf/normalize_motion". 190820-00:09:39,217 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190820-00:09:39,225 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.normalize_motion". 190820-00:09:41,807 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.fdisp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/fdisp". 190820-00:09:41,808 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190820-00:09:41,816 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.fdisp". 190820-00:10:30,579 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.fsl2itk". 190820-00:10:32,693 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:10:32,696 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:10:36,853 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:10:38,696 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:10:38,698 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:10:38,707 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:10:38,709 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:10:50,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:10:51,27 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:10:51,29 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:10:51,884 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:10:54,961 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:10:54,963 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-00:10:56,112 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:10:56,872 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:10:56,875 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:11:02,36 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:11:02,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:11:02,876 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:11:02,885 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:11:02,887 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:11:05,680 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:11:07,232 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:11:07,234 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-00:11:13,330 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:11:15,217 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:11:15,219 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-00:11:18,504 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:11:19,221 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:11:19,222 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:11:20,519 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:11:22,841 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:11:23,99 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:11:23,100 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz 190820-00:11:25,211 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:11:25,213 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-00:11:25,607 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:11:25,628 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:11:26,886 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:11:26,888 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-00:11:26,895 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:11:26,898 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:11:33,2 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:11:34,653 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:11:34,921 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:11:34,923 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:11:34,985 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.fsl2itk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_hmc_wf/fsl2itk". 190820-00:11:35,17 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190820-00:11:36,418 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:11:37,273 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:11:37,275 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:11:37,284 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:11:37,286 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 190820-00:11:37,534 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:11:39,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:11:39,313 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:11:40,674 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:11:43,401 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:11:43,402 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:11:43,472 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:11:44,969 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:11:45,635 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:11:45,637 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-00:11:46,36 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:11:47,600 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:11:47,602 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:11:47,607 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:11:47,609 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 190820-00:11:48,123 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:11:55,281 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:11:56,888 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:11:57,149 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:11:57,150 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:11:58,497 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:11:59,54 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:11:59,55 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 190820-00:11:59,492 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:12:01,36 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:12:01,38 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 190820-00:12:01,44 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:12:01,45 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz 190820-00:12:13,871 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:12:15,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:12:15,405 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:12:15,603 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:12:17,406 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:12:17,408 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:12:18,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:12:19,173 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:12:19,174 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:12:19,249 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:12:21,429 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:12:21,431 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 190820-00:12:21,748 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:12:23,298 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:12:23,299 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:12:23,919 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:12:24,21 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:12:25,463 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:12:25,465 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 190820-00:12:31,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:12:33,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:12:33,471 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 190820-00:12:41,276 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:12:43,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:12:43,105 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 190820-00:12:43,814 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:12:45,136 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:12:45,138 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 190820-00:12:54,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:12:56,994 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:12:56,995 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:12:57,102 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:12:57,572 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.fsl2itk". 190820-00:12:58,778 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg". 190820-00:12:58,781 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 190820-00:12:58,787 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:12:58,788 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:12:59,256 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:13:00,999 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:13:01,0 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:13:01,52 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:13:03,35 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:13:03,36 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 190820-00:13:03,271 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:13:05,18 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:13:05,19 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:13:05,283 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:15:04,75 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg". 190820-00:15:04,840 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg". 190820-00:15:04,843 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 190820-00:18:30,555 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg". 190820-00:18:30,943 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp". 190820-00:18:30,946 nipype.workflow INFO: [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command: 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis -noZdis -base /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05 190820-00:29:17,938 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.qwarp". 190820-00:29:19,452 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp". 190820-00:29:19,453 nipype.workflow INFO: [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader") 190820-00:29:19,473 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:29:19,475 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:29:19,697 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp". 190820-00:29:21,716 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/to_ants". 190820-00:29:21,718 nipype.workflow INFO: [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function") 190820-00:29:22,2 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.to_ants". 190820-00:29:24,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference". 190820-00:29:24,150 nipype.workflow INFO: [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz 190820-00:29:32,687 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference". 190820-00:29:35,166 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:29:35,490 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_transform". 190820-00:29:35,502 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-00:48:13,478 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_transform". 190820-00:48:13,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:48:13,952 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:48:13,959 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/merge". 190820-00:48:13,976 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-00:48:32,724 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:48:34,84 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:48:34,87 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:48:38,571 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:48:40,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:48:40,106 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:48:40,113 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:48:40,116 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:48:55,480 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:48:56,409 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:48:56,411 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:48:57,682 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:49:00,173 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:49:00,282 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:49:00,283 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz 190820-00:49:02,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:49:02,252 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:49:02,273 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:49:02,275 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:49:21,913 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:49:22,724 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:49:24,450 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:49:24,452 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m 190820-00:49:24,457 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:49:24,459 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:49:26,209 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:49:30,635 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:49:30,637 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-00:49:31,204 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:49:31,314 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:49:32,260 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:49:32,261 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz 190820-00:49:32,289 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:49:32,292 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:49:38,563 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:49:40,445 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:49:40,447 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:49:40,457 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:49:40,458 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:49:40,683 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:49:42,838 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:49:42,840 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 190820-00:49:43,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:49:44,799 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:49:44,801 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 190820-00:49:52,436 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:49:54,793 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:49:54,795 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-00:49:59,262 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:50:00,830 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:50:00,831 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:50:01,126 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:50:02,838 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:50:02,840 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:50:03,74 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:50:03,891 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:50:04,626 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:50:04,627 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-00:50:04,784 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:50:06,654 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:50:06,656 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:50:06,665 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:50:06,667 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:50:06,755 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:50:08,473 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:50:08,780 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:50:08,782 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz 190820-00:50:09,256 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:50:10,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:50:10,669 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:50:11,338 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:50:11,542 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:50:12,287 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:50:12,289 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz 190820-00:50:12,296 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:50:12,299 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:50:13,268 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:50:14,657 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:50:14,658 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-00:50:15,201 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:50:16,593 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:50:16,594 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-00:50:19,282 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:50:20,462 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:50:20,464 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:50:20,595 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.fsl2itk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_hmc_wf/fsl2itk". 190820-00:50:20,628 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190820-00:50:30,40 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:50:33,122 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:50:33,124 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:50:33,431 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:50:34,810 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:50:34,812 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:50:36,333 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:50:39,36 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:50:39,63 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:50:39,64 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:50:39,158 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:50:40,844 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:50:40,845 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-00:50:40,851 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:50:40,852 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 190820-00:50:41,475 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:50:42,861 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:50:42,862 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:50:43,459 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:50:45,603 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:50:46,674 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:50:46,675 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:50:48,864 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:50:49,707 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:50:50,627 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:50:50,629 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 190820-00:50:52,905 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:50:52,907 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz 190820-00:51:01,617 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:51:02,788 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:51:02,790 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 190820-00:51:03,349 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:51:04,838 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:51:04,840 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 190820-00:51:09,904 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.merge". 190820-00:51:12,639 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190820-00:51:12,640 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-00:51:12,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190820-00:51:14,646 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190820-00:51:14,647 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-00:51:19,178 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:51:19,516 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190820-00:51:20,101 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:51:20,968 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:51:20,969 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:51:21,275 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:51:22,391 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:51:22,393 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:51:22,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:51:22,399 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 190820-00:51:23,251 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:51:24,696 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:51:24,697 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:51:24,750 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:51:26,651 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:51:26,653 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 190820-00:51:26,942 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:51:28,422 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:51:28,424 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:51:28,622 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:51:28,823 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:51:30,381 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:51:30,383 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 190820-00:51:38,271 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:51:40,455 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:51:40,456 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 190820-00:51:40,878 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:51:42,586 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:51:42,588 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 190820-00:51:52,490 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:51:54,400 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:51:54,402 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:51:54,547 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:51:56,557 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:51:56,559 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:51:57,244 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:51:57,566 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.fsl2itk". 190820-00:51:58,34 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-00:51:58,36 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-00:51:58,41 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:51:58,42 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:51:58,72 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:52:00,302 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:52:00,303 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 190820-00:52:00,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:52:02,299 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:52:02,301 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:52:02,574 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:52:10,921 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-00:52:12,43 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190820-00:52:12,46 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-00:52:15,637 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190820-00:52:16,45 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-00:52:16,47 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-00:52:16,54 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg". 190820-00:52:16,57 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 190820-00:52:28,13 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-00:52:30,296 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-00:52:30,297 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-00:52:31,116 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-00:52:34,365 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-00:52:34,367 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-00:52:53,342 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-00:52:54,943 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-00:52:54,945 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-00:53:05,793 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-00:53:06,942 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-00:53:06,944 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-00:53:21,673 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-00:53:22,942 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-00:53:22,944 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-00:53:23,674 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-00:53:24,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-00:53:24,952 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-00:53:43,779 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-00:53:45,29 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-00:53:45,31 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:53:45,286 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-00:53:47,2 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-00:53:47,4 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-00:53:48,331 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-00:53:51,2 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-00:53:51,4 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-00:53:51,102 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-00:53:52,979 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-00:53:52,980 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-00:53:53,612 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-00:53:55,32 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.dvars" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/dvars". 190820-00:53:55,33 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190820-00:53:55,39 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-00:53:55,41 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-00:53:55,871 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-00:56:18,985 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg". 190820-00:56:20,290 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg". 190820-00:56:20,293 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 190820-00:56:45,225 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.dvars". 190820-00:59:54,606 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg". 190820-00:59:56,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp". 190820-00:59:56,236 nipype.workflow INFO: [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command: 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis -noZdis -base /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05 190820-01:10:42,126 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.qwarp". 190820-01:10:42,715 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp". 190820-01:10:42,716 nipype.workflow INFO: [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader") 190820-01:10:42,736 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-01:10:42,738 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-01:10:42,959 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp". 190820-01:10:44,971 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/to_ants". 190820-01:10:44,972 nipype.workflow INFO: [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function") 190820-01:10:45,285 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.to_ants". 190820-01:10:47,583 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference". 190820-01:10:47,585 nipype.workflow INFO: [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz 190820-01:10:56,80 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference". 190820-01:10:58,693 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-01:11:00,760 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_transform". 190820-01:11:00,773 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-01:29:39,175 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_transform". 190820-01:29:41,96 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-01:29:41,98 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-01:29:41,105 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/merge". 190820-01:29:41,121 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-01:30:00,269 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-01:30:01,226 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm". 190820-01:30:01,229 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-01:30:09,962 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm". 190820-01:30:11,224 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-01:30:11,226 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-01:30:11,241 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190820-01:30:11,244 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-01:30:26,541 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-01:30:27,565 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-01:30:27,567 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-01:30:28,798 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-01:30:31,553 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-01:30:31,555 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz 190820-01:30:50,155 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-01:30:51,542 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-01:30:51,544 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m 190820-01:30:56,130 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190820-01:30:56,665 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-01:30:57,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-01:30:57,249 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz 190820-01:30:57,272 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-01:30:57,274 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-01:30:57,280 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-01:30:57,282 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-01:31:07,586 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-01:31:09,775 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-01:31:09,776 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 190820-01:31:10,324 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-01:31:11,769 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-01:31:11,771 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 190820-01:31:17,537 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-01:31:19,793 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-01:31:19,794 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-01:31:21,589 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-01:31:24,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-01:31:25,622 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-01:31:25,624 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:31:25,635 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-01:31:25,637 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-01:31:25,750 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-01:31:25,791 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-01:31:27,421 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-01:31:27,423 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-01:31:27,435 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm". 190820-01:31:27,438 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-01:31:28,283 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-01:31:29,785 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-01:31:29,786 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:31:29,870 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-01:31:31,728 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-01:31:31,729 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz 190820-01:31:32,132 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-01:31:33,39 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm". 190820-01:31:33,455 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-01:31:33,456 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-01:31:33,754 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-01:31:35,440 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-01:31:35,442 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-01:31:35,452 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-01:31:35,454 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-01:31:42,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-01:31:43,820 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-01:31:43,822 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-01:31:51,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-01:31:53,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-01:31:53,813 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-01:31:56,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-01:31:57,773 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-01:31:57,775 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-01:31:59,548 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-01:32:03,271 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-01:32:03,672 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-01:32:03,674 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz 190820-01:32:04,1 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-01:32:05,442 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-01:32:05,443 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-01:32:05,463 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm". 190820-01:32:05,466 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-01:32:05,969 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-01:32:07,839 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-01:32:07,841 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-01:32:12,338 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm". 190820-01:32:13,317 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.merge". 190820-01:32:13,534 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-01:32:13,536 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-01:32:13,639 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.fsl2itk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_hmc_wf/fsl2itk". 190820-01:32:13,670 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190820-01:32:15,861 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190820-01:32:15,862 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-01:32:15,911 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190820-01:32:18,153 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190820-01:32:18,155 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-01:32:20,665 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-01:32:22,304 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-01:32:22,305 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:32:22,556 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-01:32:23,557 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190820-01:32:23,918 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-01:32:23,920 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-01:32:25,176 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-01:32:26,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-01:32:27,873 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-01:32:27,874 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:32:27,888 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-01:32:27,890 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 190820-01:32:27,998 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-01:32:30,98 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-01:32:30,100 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-01:32:30,642 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-01:32:31,756 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-01:32:31,758 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-01:32:32,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-01:32:35,830 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-01:32:36,470 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-01:32:37,444 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-01:32:37,445 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 190820-01:32:37,451 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-01:32:37,452 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-01:32:39,259 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-01:32:43,891 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-01:32:43,893 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz 190820-01:32:46,504 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-01:32:47,662 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-01:32:47,663 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 190820-01:32:48,90 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-01:32:49,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-01:32:49,557 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 190820-01:33:02,298 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-01:33:03,617 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-01:33:03,618 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:33:03,757 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-01:33:05,615 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-01:33:05,616 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-01:33:06,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-01:33:06,891 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-01:33:07,671 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-01:33:07,672 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:33:07,686 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-01:33:07,688 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 190820-01:33:07,739 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-01:33:09,832 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-01:33:09,833 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 190820-01:33:10,291 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-01:33:11,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-01:33:11,792 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-01:33:12,516 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-01:33:13,608 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-01:33:15,728 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-01:33:15,730 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 190820-01:33:23,213 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-01:33:25,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-01:33:25,773 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 190820-01:33:26,43 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-01:33:27,472 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-01:33:27,474 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 190820-01:33:37,554 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-01:33:39,439 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-01:33:39,440 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:33:39,660 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-01:33:40,947 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.fsl2itk". 190820-01:33:41,171 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-01:33:41,173 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-01:33:41,178 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-01:33:41,180 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-01:33:41,578 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-01:33:43,444 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-01:33:43,445 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:33:43,495 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-01:33:45,437 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-01:33:45,439 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 190820-01:33:45,661 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-01:33:47,436 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-01:33:47,437 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-01:33:47,716 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-01:33:54,316 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-01:33:55,179 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190820-01:33:55,182 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-01:33:59,845 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190820-01:34:01,182 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-01:34:01,184 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-01:34:01,192 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg". 190820-01:34:01,194 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 190820-01:34:13,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-01:34:15,450 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-01:34:15,452 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-01:34:16,457 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-01:34:19,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-01:34:19,533 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-01:34:38,232 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-01:34:40,174 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-01:34:40,175 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-01:34:51,168 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-01:34:54,122 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-01:34:54,124 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-01:35:08,950 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-01:35:10,100 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-01:35:10,102 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-01:35:10,863 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-01:35:12,115 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-01:35:12,117 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-01:35:30,873 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-01:35:32,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-01:35:32,149 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:35:32,470 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-01:35:34,115 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-01:35:34,117 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-01:35:35,540 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-01:35:38,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-01:35:38,161 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-01:35:38,306 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-01:35:40,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-01:35:40,150 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-01:35:40,758 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-01:35:42,147 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.dvars" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/dvars". 190820-01:35:42,148 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190820-01:35:42,157 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-01:35:42,159 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-01:35:43,81 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-01:38:07,875 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg". 190820-01:38:09,423 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg". 190820-01:38:09,426 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 190820-01:38:31,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.dvars". 190820-01:40:18,903 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg". 190820-01:40:19,320 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/qwarp". 190820-01:40:19,323 nipype.workflow INFO: [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command: 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis -noZdis -base /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05 190820-01:51:02,453 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.qwarp". 190820-01:51:03,802 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp". 190820-01:51:03,804 nipype.workflow INFO: [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader") 190820-01:51:03,824 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-01:51:03,826 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-01:51:04,45 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp". 190820-01:51:06,68 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/to_ants". 190820-01:51:06,69 nipype.workflow INFO: [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function") 190820-01:51:06,403 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.to_ants". 190820-01:51:08,509 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference". 190820-01:51:08,511 nipype.workflow INFO: [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz 190820-01:51:16,952 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference". 190820-01:51:19,564 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-01:51:19,842 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_transform". 190820-01:51:19,855 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-02:09:49,0 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_transform". 190820-02:09:50,201 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-02:09:50,203 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-02:09:50,211 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/merge". 190820-02:09:50,228 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-02:10:09,424 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-02:10:10,315 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm". 190820-02:10:10,318 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-02:10:21,992 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm". 190820-02:10:24,333 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-02:10:24,335 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-02:10:24,343 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190820-02:10:24,346 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-02:10:33,153 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190820-02:10:34,492 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-02:10:34,494 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-02:10:34,512 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4". 190820-02:10:34,515 nipype.workflow INFO: [Node] Setting-up "_inu_n40" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40". 190820-02:10:34,516 nipype.workflow INFO: [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-NDARINVGBXJFCXY_run-01_T1w_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected.nii.gz --shrink-factor 4 190820-02:10:41,103 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-02:10:43,283 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-02:10:43,285 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-02:10:45,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-02:10:49,919 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-02:10:49,922 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz 190820-02:11:02,413 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-02:11:03,849 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-02:11:03,850 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-02:11:06,137 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-02:11:10,558 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-02:11:10,560 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-02:11:24,773 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-02:11:26,603 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-02:11:26,605 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m 190820-02:11:37,534 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-02:11:40,590 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-02:11:40,591 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz 190820-02:11:44,429 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-02:11:46,196 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-02:11:46,197 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-02:11:55,212 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-02:11:57,139 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-02:11:58,35 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-02:11:58,37 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 190820-02:11:58,43 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-02:11:58,44 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-02:11:59,120 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-02:12:00,460 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-02:12:00,462 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 190820-02:12:12,878 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-02:12:14,189 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-02:12:14,191 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-02:12:15,116 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-02:12:16,451 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-02:12:16,453 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-02:12:18,868 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-02:12:20,474 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-02:12:20,475 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-02:12:20,642 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-02:12:22,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-02:12:22,251 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-02:12:23,865 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-02:12:26,449 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-02:12:26,451 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-02:12:26,644 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-02:12:28,541 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-02:12:28,542 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz 190820-02:12:29,125 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-02:12:30,321 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-02:12:30,322 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-02:12:31,366 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-02:12:33,424 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-02:12:36,180 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-02:12:36,181 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-02:12:36,406 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-02:12:38,243 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-02:12:38,244 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-02:12:39,607 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-02:12:42,6 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-02:12:42,8 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-02:12:42,155 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-02:12:44,347 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-02:12:44,349 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-02:12:44,844 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-02:12:46,43 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-02:12:46,44 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-02:12:46,933 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-02:13:18,953 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.merge". 190820-02:13:20,95 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190820-02:13:20,96 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-02:13:20,134 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190820-02:13:22,245 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190820-02:13:22,247 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-02:13:26,626 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190820-02:15:15,816 nipype.workflow INFO: [Node] Finished "_inu_n40". 190820-02:15:15,817 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.inu_n4". 190820-02:15:17,530 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-02:15:17,532 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-02:15:17,539 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/lap_target". 190820-02:15:17,540 nipype.workflow INFO: [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_maths.nii.gz Laplacian /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected.nii.gz 1.5 1 190820-02:15:17,545 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/res_target". 190820-02:15:17,547 nipype.workflow INFO: [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected.nii.gz sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_resampled.nii.gz 4 4 4 1 190820-02:15:23,59 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.res_target". 190820-02:15:37,820 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-02:15:39,708 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190820-02:15:39,711 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-02:15:39,849 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.lap_target". 190820-02:15:41,803 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/mrg_target". 190820-02:15:41,804 nipype.workflow INFO: [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge") 190820-02:15:41,806 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.mrg_target". 190820-02:15:43,115 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190820-02:15:43,545 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-02:15:43,547 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-02:15:43,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg". 190820-02:15:43,558 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 190820-02:15:55,621 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-02:15:57,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-02:15:57,812 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-02:15:58,634 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-02:16:01,817 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-02:16:01,819 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-02:16:20,925 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-02:16:22,431 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-02:16:22,433 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-02:16:33,328 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-02:16:34,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-02:16:34,506 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-02:16:49,631 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-02:16:52,454 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-02:16:52,456 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-02:16:53,200 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-02:16:54,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-02:16:54,533 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-02:17:13,118 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-02:17:14,490 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-02:17:14,492 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-02:17:14,800 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-02:17:16,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-02:17:16,519 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-02:17:17,854 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-02:17:20,595 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-02:17:20,597 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-02:17:20,720 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-02:17:22,517 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-02:17:22,518 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-02:17:23,63 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-02:17:24,487 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.dvars" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/dvars". 190820-02:17:24,489 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190820-02:17:24,498 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-02:17:24,500 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-02:17:25,359 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-02:18:17,121 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg". 190820-02:18:17,764 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg". 190820-02:18:17,767 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 190820-02:20:12,501 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.dvars". 190820-02:22:06,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg". 190820-02:22:07,141 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/qwarp". 190820-02:22:07,144 nipype.workflow INFO: [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command: 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis -noZdis -base /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05 190820-02:32:52,422 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.qwarp". 190820-02:32:53,660 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp". 190820-02:32:53,661 nipype.workflow INFO: [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader") 190820-02:32:53,680 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/init_aff". 190820-02:32:53,682 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1 190820-02:32:53,878 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp". 190820-02:32:55,824 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/to_ants". 190820-02:32:55,825 nipype.workflow INFO: [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function") 190820-02:32:56,44 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.to_ants". 190820-02:32:58,238 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference". 190820-02:32:58,239 nipype.workflow INFO: [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz 190820-02:33:02,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.init_aff". 190820-02:33:03,252 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference". 190820-02:33:03,699 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_transform". 190820-02:33:03,711 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-02:51:45,287 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_transform". 190820-02:51:46,240 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-02:51:46,241 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-02:51:46,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/merge". 190820-02:51:46,259 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-02:52:05,371 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-02:52:06,162 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm". 190820-02:52:06,165 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-02:52:12,640 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm". 190820-02:52:14,172 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-02:52:14,174 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-02:52:14,192 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/norm". 190820-02:52:14,195 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform Affine[ 0.1 ] --metric MI[ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0 190820-02:52:29,204 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-02:52:31,269 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-02:52:31,271 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-02:52:34,169 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-02:52:40,266 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-02:52:40,268 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz 190820-02:52:52,111 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-02:52:53,318 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-02:52:53,319 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m 190820-02:52:56,596 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-02:52:57,316 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-02:52:57,318 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz 190820-02:53:01,910 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-02:53:03,323 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-02:53:03,324 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 190820-02:53:03,586 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-02:53:05,328 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-02:53:05,330 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 190820-02:53:11,309 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-02:53:13,324 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-02:53:13,325 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-02:53:13,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-02:53:15,321 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-02:53:15,322 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-02:53:15,785 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-02:53:17,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-02:53:17,328 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-02:53:17,374 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-02:53:19,321 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-02:53:19,323 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz 190820-02:53:19,525 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-02:53:21,326 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-02:53:21,328 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-02:53:21,583 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-02:53:26,435 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.merge". 190820-02:53:27,165 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190820-02:53:27,166 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-02:53:27,184 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190820-02:53:29,161 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190820-02:53:29,162 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-02:53:30,150 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190820-04:04:28,15 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.norm". 190820-04:04:28,545 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190820-04:04:28,547 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190820-04:04:28,635 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask". 190820-04:04:28,637 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz --interpolation Gaussian --output tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz --reference-image /mnt/sub-NDARINVGBXJFCXY/anat/sub-NDARINVGBXJFCXY_run-01_T1w.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ] 190820-04:04:47,519 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190820-04:04:48,722 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190820-04:04:48,725 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190820-04:04:53,448 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190820-04:04:54,724 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190820-04:04:54,726 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190820-04:04:54,739 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon1". 190820-04:04:54,741 nipype.workflow INFO: [Node] Running "autorecon1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon1 -i /mnt/sub-NDARINVGBXJFCXY/anat/sub-NDARINVGBXJFCXY_run-01_T1w.nii.gz -noskullstrip -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-04:05:06,97 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190820-04:05:06,886 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-04:05:06,888 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190820-04:05:07,848 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-04:05:10,887 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-04:05:10,889 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-04:05:24,777 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-04:05:26,739 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-04:05:26,741 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-04:05:30,926 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-04:05:32,909 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-04:05:32,910 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-04:05:39,1 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-04:05:40,742 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-04:05:40,744 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-04:05:40,993 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-04:05:42,911 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-04:05:42,913 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-04:05:43,317 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask". 190820-04:05:44,836 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask". 190820-04:05:44,837 nipype.workflow INFO: [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command: ThresholdImage 3 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000 190820-04:05:46,525 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask". 190820-04:05:47,259 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-04:05:48,751 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-04:05:48,753 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-04:05:48,767 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask". 190820-04:05:48,768 nipype.workflow INFO: [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz PadImage /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 10 190820-04:05:48,775 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask". 190820-04:05:48,776 nipype.workflow INFO: [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz MD /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 2 190820-04:05:48,936 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-04:05:50,778 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask". 190820-04:05:50,980 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-04:05:50,982 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-04:05:51,489 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-04:05:51,585 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask". 190820-04:05:52,755 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-04:05:52,756 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-04:05:52,768 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask". 190820-04:05:52,769 nipype.workflow INFO: [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz GetLargestComponent /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 190820-04:05:52,798 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-04:05:54,210 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask". 190820-04:05:54,611 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-04:05:54,613 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-04:05:54,787 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-04:05:56,674 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.dvars" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/dvars". 190820-04:05:56,675 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190820-04:05:56,690 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-04:05:56,692 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-04:05:56,973 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-04:06:45,753 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.dvars". 190820-04:10:45,621 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon1". 190820-04:10:46,762 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos". 190820-04:10:46,764 nipype.workflow INFO: [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command: Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled.nii.gz] --use-random-seed 1 190820-04:10:46,920 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm". 190820-04:10:46,922 nipype.workflow INFO: [Node] Running "fsnative_2_t1_xfm" ("niworkflows.interfaces.freesurfer.PatchedRobustRegister"), a CommandLine Interface with command: mri_robust_register --satit --iscale --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --mov /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/T1.mgz --dst /mnt/sub-NDARINVGBXJFCXY/anat/sub-NDARINVGBXJFCXY_run-01_T1w.nii.gz 190820-04:12:18,162 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos". 190820-04:12:18,975 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm". 190820-04:12:18,976 nipype.workflow INFO: [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths.nii.gz PadImage /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled.nii.gz 10 190820-04:12:20,481 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm". 190820-04:12:20,977 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels". 190820-04:12:20,978 nipype.workflow INFO: [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function") 190820-04:12:21,519 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels". 190820-04:12:22,979 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf". 190820-04:12:22,981 nipype.workflow INFO: [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-01.nii.gz -10 190820-04:12:22,986 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf". 190820-04:12:22,987 nipype.workflow INFO: [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-01.nii.gz 10 190820-04:12:22,993 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm". 190820-04:12:22,995 nipype.workflow INFO: [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-02.nii.gz 190820-04:12:23,0 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm". 190820-04:12:23,1 nipype.workflow INFO: [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-03.nii.gz 190820-04:12:25,871 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf". 190820-04:12:27,456 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm". 190820-04:12:27,974 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm". 190820-04:12:28,61 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm". 190820-04:12:28,985 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm". 190820-04:12:28,986 nipype.workflow INFO: [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz 2 190820-04:12:28,992 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm". 190820-04:12:28,993 nipype.workflow INFO: [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz 190820-04:12:28,998 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm". 190820-04:12:29,0 nipype.workflow INFO: [Node] Running "t1_2_fsnative_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --invert --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta 190820-04:12:29,285 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm". 190820-04:12:31,302 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk". 190820-04:12:31,304 nipype.workflow INFO: [Node] Running "lta_2_itk" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta --outitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk/out.txt 190820-04:12:31,620 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk". 190820-04:12:31,682 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm". 190820-04:12:33,150 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm". 190820-04:12:33,151 nipype.workflow INFO: [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10 190820-04:12:34,336 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf". 190820-04:12:35,188 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm". 190820-04:12:39,905 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm". 190820-04:12:40,820 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm". 190820-04:12:40,821 nipype.workflow INFO: [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz 190820-04:12:41,721 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm". 190820-04:12:42,822 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm". 190820-04:12:42,824 nipype.workflow INFO: [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 08_mult_gm_maths.nii.gz addtozero /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-NDARINVGBXJFCXY_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz 190820-04:12:46,26 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm". 190820-04:12:46,825 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm". 190820-04:12:46,826 nipype.workflow INFO: [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz 190820-04:12:47,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm". 190820-04:12:48,827 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm". 190820-04:12:48,828 nipype.workflow INFO: [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10 190820-04:12:48,835 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm". 190820-04:12:48,836 nipype.workflow INFO: [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz 190820-04:12:50,227 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm". 190820-04:12:50,994 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms". 190820-04:12:50,995 nipype.workflow INFO: [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge") 190820-04:12:50,997 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms". 190820-04:12:52,878 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm". 190820-04:12:54,831 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm". 190820-04:12:54,832 nipype.workflow INFO: [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10 190820-04:12:54,837 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2". 190820-04:12:54,838 nipype.workflow INFO: [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function") 190820-04:12:55,268 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2". 190820-04:12:55,778 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm". 190820-04:12:56,834 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7". 190820-04:12:56,835 nipype.workflow INFO: [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz 190820-04:12:59,783 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7". 190820-04:13:00,836 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7". 190820-04:13:00,837 nipype.workflow INFO: [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2 190820-04:13:03,349 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7". 190820-04:13:04,839 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7". 190820-04:13:04,840 nipype.workflow INFO: [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz 190820-04:13:06,11 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7". 190820-04:13:06,841 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7". 190820-04:13:06,842 nipype.workflow INFO: [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4 190820-04:13:08,189 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7". 190820-04:13:08,842 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7". 190820-04:13:08,844 nipype.workflow INFO: [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2 190820-04:13:15,545 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7". 190820-04:13:16,848 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2". 190820-04:13:16,850 nipype.workflow INFO: [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 190820-04:13:19,992 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2". 190820-04:13:20,851 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2". 190820-04:13:20,852 nipype.workflow INFO: [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5 190820-04:13:22,187 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2". 190820-04:13:22,853 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2". 190820-04:13:22,854 nipype.workflow INFO: [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5 190820-04:13:25,419 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2". 190820-04:13:26,856 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask". 190820-04:13:26,858 nipype.workflow INFO: [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10 190820-04:13:27,510 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask". 190820-04:13:28,858 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform". 190820-04:13:28,859 nipype.workflow INFO: [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function") 190820-04:13:29,31 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform". 190820-04:13:34,864 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final". 190820-04:13:34,867 nipype.workflow INFO: [Node] Setting-up "_inu_n4_final0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0". 190820-04:13:34,869 nipype.workflow INFO: [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /mnt/sub-NDARINVGBXJFCXY/anat/sub-NDARINVGBXJFCXY_run-01_T1w.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-NDARINVGBXJFCXY_run-01_T1w_corrected.nii.gz, sub-NDARINVGBXJFCXY_run-01_T1w_bias.nii.gz ] --shrink-factor 4 --weight-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz 190820-04:14:36,113 nipype.workflow INFO: [Node] Finished "_inu_n4_final0". 190820-04:14:36,114 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final". 190820-04:14:36,926 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/apply_mask". 190820-04:14:36,928 nipype.workflow INFO: [Node] Setting-up "_apply_mask0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0". 190820-04:14:36,930 nipype.workflow INFO: [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-NDARINVGBXJFCXY_run-01_T1w_corrected.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_masked.nii.gz 190820-04:14:38,38 nipype.workflow INFO: [Node] Finished "_apply_mask0". 190820-04:14:38,39 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.brain_extraction_wf.apply_mask". 190820-04:14:43,826 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/trunc_mov". 190820-04:14:43,828 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz 0.01 0.999 256 190820-04:14:49,146 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190820-04:14:53,118 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern". 190820-04:14:53,119 nipype.workflow INFO: [Node] Running "skull_strip_extern" ("niworkflows.interfaces.freesurfer.FSInjectBrainExtracted") 190820-04:14:54,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern". 190820-04:14:55,292 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol". 190820-04:14:55,296 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-04:14:55,296 nipype.workflow INFO: [Node] Running "autorecon2_vol" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon2-volonly -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-04:14:55,298 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-06:37:20,831 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol". 190820-06:37:24,262 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190820-06:37:24,268 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-06:37:24,268 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-06:37:24,269 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-08:44:38,239 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190820-08:44:39,642 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190820-08:44:39,648 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-08:44:39,648 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-08:44:39,650 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer 190820-10:48:09,390 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190820-10:48:10,990 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs". 190820-10:48:10,994 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190820-10:48:11,5 nipype.interface INFO: recon-all complete : Not running 190820-10:48:11,5 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190820-10:48:11,8 nipype.interface INFO: recon-all complete : Not running 190820-10:48:11,100 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190820-10:48:11,102 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190820-10:48:11,110 nipype.interface INFO: recon-all complete : Not running 190820-10:48:11,110 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190820-10:48:11,113 nipype.interface INFO: recon-all complete : Not running 190820-10:48:11,186 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190820-10:48:11,189 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs". 190820-10:48:14,991 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190820-10:48:14,998 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190820-10:48:14,999 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190820-10:48:15,2 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190820-11:12:16,737 nipype.workflow INFO: [Node] Finished "_autorecon30". 190820-11:12:17,893 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190820-11:12:17,901 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortribbon -nohyporelabel -noapas2aseg -nosegstats -nowmparc 190820-11:12:17,901 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortribbon -nohyporelabel -noapas2aseg -nosegstats -nowmparc 190820-11:12:17,905 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortribbon -nohyporelabel -noapas2aseg -nosegstats -nowmparc 190820-11:28:43,352 nipype.workflow INFO: [Node] Finished "_autorecon31". 190820-11:28:44,636 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3". 190820-11:28:44,640 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190820-11:28:44,649 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels 190820-11:28:44,649 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels 190820-11:28:44,654 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINVGBXJFCXY -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels 190820-11:28:48,870 nipype.workflow INFO: [Node] Finished "_autorecon30". 190820-11:28:48,872 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190820-11:28:48,878 nipype.interface INFO: recon-all complete : Not running 190820-11:28:48,878 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190820-11:28:48,883 nipype.interface INFO: recon-all complete : Not running 190820-11:28:48,963 nipype.workflow INFO: [Node] Finished "_autorecon31". 190820-11:28:48,966 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3". 190820-11:28:50,639 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.targets" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/targets". 190820-11:28:50,641 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/targets/mapflow/_targets0". 190820-11:28:50,642 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190820-11:28:50,644 nipype.workflow INFO: [Node] Finished "_targets0". 190820-11:28:50,645 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.targets". 190820-11:28:50,647 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190820-11:28:50,650 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-NDARINVGBXJFCXY --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer 190820-11:28:50,656 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.targets" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/targets". 190820-11:28:50,658 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/targets/mapflow/_targets0". 190820-11:28:50,659 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190820-11:28:50,662 nipype.workflow INFO: [Node] Finished "_targets0". 190820-11:28:50,662 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.targets". 190820-11:28:50,665 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.targets" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/targets". 190820-11:28:50,667 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/targets/mapflow/_targets0". 190820-11:28:50,668 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190820-11:28:50,670 nipype.workflow INFO: [Node] Finished "_targets0". 190820-11:28:50,671 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.targets". 190820-11:28:50,673 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.targets" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/targets". 190820-11:28:50,675 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/targets/mapflow/_targets0". 190820-11:28:50,676 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190820-11:28:50,678 nipype.workflow INFO: [Node] Finished "_targets0". 190820-11:28:50,679 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.targets". 190820-11:28:52,809 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/fs_datasource". 190820-11:28:52,810 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190820-11:28:52,825 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/fs_datasource". 190820-11:28:52,826 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190820-11:28:52,830 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/get_surfaces". 190820-11:28:52,831 nipype.workflow INFO: [Node] Running "get_surfaces" ("nipype.interfaces.io.FreeSurferSource") 190820-11:28:52,862 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/recon_report". 190820-11:28:52,868 nipype.interface INFO: recon-all complete : Not running 190820-11:28:52,868 nipype.workflow INFO: [Node] Running "recon_report" ("niworkflows.interfaces.segmentation.ReconAllRPT"), a CommandLine Interface with command: echo recon-all: nothing to do 190820-11:28:52,878 nipype.interface INFO: recon-all complete : Not running 190820-11:28:52,900 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource". 190820-11:28:52,901 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource". 190820-11:28:52,924 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces". 190820-11:28:54,983 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative". 190820-11:28:54,985 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/aseg.mgz --seg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg.mgz --temp /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/rawavg.mgz --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz 190820-11:28:54,993 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative". 190820-11:28:54,995 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/aseg.mgz --seg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg.mgz --temp /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/rawavg.mgz --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz 190820-11:28:57,300 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190820-11:28:57,303 nipype.workflow INFO: [Node] Running "_midthickness0" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.pial -thickness -thickness_name /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.thickness /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.smoothwm 0.5 midthickness 190820-11:29:18,996 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative". 190820-11:29:19,123 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative". 190820-11:29:21,168 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii". 190820-11:29:21,170 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz --input_volume /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz --output_volume /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz 190820-11:29:21,177 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii". 190820-11:29:21,179 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz --input_volume /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz --output_volume /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz 190820-11:29:21,306 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report". 190820-11:29:24,234 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190820-11:29:24,237 nipype.workflow INFO: [Node] Running "_midthickness1" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.pial -thickness -thickness_name /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.thickness /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.smoothwm 0.5 midthickness 190820-11:29:25,129 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii". 190820-11:29:25,173 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii". 190820-11:29:49,643 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.refine" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/refine". 190820-11:29:49,644 nipype.workflow INFO: [Node] Running "refine" ("niworkflows.interfaces.freesurfer.RefineBrainMask") 190820-11:30:36,461 nipype.interface INFO: stdout 2019-08-20T11:30:36.461542: 190820-11:30:36,462 nipype.interface INFO: stdout 2019-08-20T11:30:36.461542:Matrix from LTA: 190820-11:30:36,462 nipype.interface INFO: stdout 2019-08-20T11:30:36.461542: 0.99994 -0.00505 -0.00977 2.49951; 190820-11:30:36,462 nipype.interface INFO: stdout 2019-08-20T11:30:36.461542: 0.00959 -0.03472 0.99935 -20.63977; 190820-11:30:36,462 nipype.interface INFO: stdout 2019-08-20T11:30:36.461542:-0.00539 -0.99938 -0.03467 -5.45473; 190820-11:30:36,462 nipype.interface INFO: stdout 2019-08-20T11:30:36.461542: 0.00000 0.00000 0.00000 1.00000; 190820-11:30:36,966 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693: 190820-11:30:36,966 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:30:36,966 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:movvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190820-11:30:36,966 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:targvol /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:30:36,966 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:outvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:regfile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:invert 0 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:tal 0 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:talres 2 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:regheader 0 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:noresample 0 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:interp nearest (0) 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:precision float (3) 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:Gdiag_no -1 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:Synth 0 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:SynthSeed 1566997653 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693: 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:Final tkRAS-to-tkRAS Matrix is: 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693: 0.99994 -0.00505 -0.00977 2.49952; 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693: 0.00959 -0.03472 0.99935 -20.63978; 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693:-0.00539 -0.99938 -0.03467 -5.45473; 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.966693: 0.00000 0.00000 0.00000 1.00000; 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.967599: 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.967599: 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.967599:Vox2Vox Matrix is: 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.967599: 0.41664 -0.00407 0.00211 -9.12004; 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.967599:-0.00225 -0.01445 0.41641 -3.89095; 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.967599:-0.00400 -0.41640 -0.01447 77.06213; 190820-11:30:36,967 nipype.interface INFO: stdout 2019-08-20T11:30:36.967599: 0.00000 0.00000 0.00000 1.00000; 190820-11:30:39,910 nipype.interface INFO: stdout 2019-08-20T11:30:39.910641: 190820-11:30:39,910 nipype.interface INFO: stdout 2019-08-20T11:30:39.910641:Resampling 190820-11:30:39,910 nipype.interface INFO: stdout 2019-08-20T11:30:39.910641:Output registration matrix is identity 190820-11:30:39,910 nipype.interface INFO: stdout 2019-08-20T11:30:39.910641: 190820-11:30:39,910 nipype.interface INFO: stdout 2019-08-20T11:30:39.910641:mri_vol2vol done 190820-11:31:39,197 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190820-11:31:40,498 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister". 190820-11:31:40,500 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.dat --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-NDARINVGBXJFCXY 190820-11:31:40,507 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190820-11:31:40,510 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-NDARINVGBXJFCXY --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer 190820-11:33:30,945 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.refine". 190820-11:33:37,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.applyrefined" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined". 190820-11:33:37,329 nipype.workflow INFO: [Node] Running "applyrefined" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/refine/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz 190820-11:33:43,231 nipype.interface INFO: stdout 2019-08-20T11:33:43.231789: 190820-11:33:43,232 nipype.interface INFO: stdout 2019-08-20T11:33:43.231789:Matrix from LTA: 190820-11:33:43,232 nipype.interface INFO: stdout 2019-08-20T11:33:43.231789: 0.99995 -0.00219 -0.00941 2.44480; 190820-11:33:43,232 nipype.interface INFO: stdout 2019-08-20T11:33:43.231789: 0.00939 -0.00877 0.99992 -19.41035; 190820-11:33:43,232 nipype.interface INFO: stdout 2019-08-20T11:33:43.231789:-0.00227 -0.99996 -0.00875 -5.85519; 190820-11:33:43,232 nipype.interface INFO: stdout 2019-08-20T11:33:43.231789: 0.00000 0.00000 0.00000 1.00000; 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428: 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:movvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:targvol /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:outvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:regfile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:invert 0 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:tal 0 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:talres 2 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:regheader 0 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:noresample 0 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:interp nearest (0) 190820-11:33:43,834 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:precision float (3) 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:Gdiag_no -1 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:Synth 0 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:SynthSeed 1566808280 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428: 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:Final tkRAS-to-tkRAS Matrix is: 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428: 0.99995 -0.00219 -0.00941 2.44480; 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428: 0.00939 -0.00877 0.99992 -19.41035; 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428:-0.00227 -0.99996 -0.00875 -5.85519; 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.834428: 0.00000 0.00000 0.00000 1.00000; 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.835331: 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.835331: 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.835331:Vox2Vox Matrix is: 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.835331: 0.41665 -0.00392 0.00091 -8.96441; 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.835331:-0.00095 -0.00365 0.41665 -5.30364; 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.835331:-0.00391 -0.41663 -0.00366 76.20988; 190820-11:33:43,835 nipype.interface INFO: stdout 2019-08-20T11:33:43.835331: 0.00000 0.00000 0.00000 1.00000; 190820-11:33:44,618 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.applyrefined". 190820-11:33:46,164 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/gen_ref". 190820-11:33:46,165 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190820-11:33:47,345 nipype.interface INFO: stdout 2019-08-20T11:33:47.345740: 190820-11:33:47,345 nipype.interface INFO: stdout 2019-08-20T11:33:47.345740:Resampling 190820-11:33:47,345 nipype.interface INFO: stdout 2019-08-20T11:33:47.345740:Output registration matrix is identity 190820-11:33:47,345 nipype.interface INFO: stdout 2019-08-20T11:33:47.345740: 190820-11:33:47,345 nipype.interface INFO: stdout 2019-08-20T11:33:47.345740:mri_vol2vol done 190820-11:33:48,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.gen_ref". 190820-11:33:50,179 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190820-11:33:50,181 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190820-11:34:05,602 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190820-11:34:09,934 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190820-11:34:09,936 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190820-11:34:25,32 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190820-11:34:28,232 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/gen_ref". 190820-11:34:28,234 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190820-11:34:30,687 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.gen_ref". 190820-11:34:33,92 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190820-11:34:33,94 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190820-11:34:47,389 nipype.interface INFO: stdout 2019-08-20T11:34:47.388927: 190820-11:34:47,389 nipype.interface INFO: stdout 2019-08-20T11:34:47.388927:Matrix from LTA: 190820-11:34:47,389 nipype.interface INFO: stdout 2019-08-20T11:34:47.388927: 0.99992 -0.00308 -0.01255 2.69903; 190820-11:34:47,389 nipype.interface INFO: stdout 2019-08-20T11:34:47.388927: 0.01243 -0.03638 0.99926 -21.22339; 190820-11:34:47,389 nipype.interface INFO: stdout 2019-08-20T11:34:47.388927:-0.00353 -0.99933 -0.03634 -5.41433; 190820-11:34:47,389 nipype.interface INFO: stdout 2019-08-20T11:34:47.388927: 0.00000 0.00000 0.00000 1.00000; 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468: 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:movvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:targvol /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:outvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:regfile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:invert 0 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:tal 0 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:talres 2 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:regheader 0 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:noresample 0 190820-11:34:47,976 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:interp nearest (0) 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:precision float (3) 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:Gdiag_no -1 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:Synth 0 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:SynthSeed 1566951381 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468: 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:Final tkRAS-to-tkRAS Matrix is: 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468: 0.99992 -0.00308 -0.01255 2.69901; 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468: 0.01243 -0.03638 0.99926 -21.22338; 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468:-0.00353 -0.99933 -0.03634 -5.41433; 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.976468: 0.00000 0.00000 0.00000 1.00000; 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.977366: 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.977366: 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.977366:Vox2Vox Matrix is: 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.977366: 0.41663 -0.00523 0.00128 -8.94805; 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.977366:-0.00147 -0.01514 0.41639 -3.91537; 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.977366:-0.00518 -0.41636 -0.01516 77.05420; 190820-11:34:47,977 nipype.interface INFO: stdout 2019-08-20T11:34:47.977366: 0.00000 0.00000 0.00000 1.00000; 190820-11:34:48,423 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190820-11:34:51,121 nipype.interface INFO: stdout 2019-08-20T11:34:51.121557: 190820-11:34:51,121 nipype.interface INFO: stdout 2019-08-20T11:34:51.121557:Resampling 190820-11:34:51,121 nipype.interface INFO: stdout 2019-08-20T11:34:51.121557:Output registration matrix is identity 190820-11:34:51,121 nipype.interface INFO: stdout 2019-08-20T11:34:51.121557: 190820-11:34:51,121 nipype.interface INFO: stdout 2019-08-20T11:34:51.121557:mri_vol2vol done 190820-11:34:52,472 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190820-11:34:52,473 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190820-11:34:54,785 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190820-11:34:57,295 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister". 190820-11:34:57,297 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.dat --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-NDARINVGBXJFCXY 190820-11:34:57,305 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref". 190820-11:34:57,306 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190820-11:34:57,321 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref". 190820-11:34:57,323 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190820-11:34:57,348 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.t1_seg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg". 190820-11:34:57,349 nipype.workflow INFO: [Node] Running "t1_seg" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command: fast -N -p -g -S 1 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz 190820-11:35:01,324 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.gen_ref". 190820-11:35:01,400 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.gen_ref". 190820-11:35:03,651 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190820-11:35:03,652 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190820-11:35:03,660 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190820-11:35:03,661 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190820-11:35:03,671 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190820-11:35:03,673 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190820-11:35:03,689 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190820-11:35:03,690 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190820-11:35:16,596 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190820-11:35:34,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190820-11:35:34,956 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190820-11:35:35,249 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190820-11:35:35,296 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190820-11:36:23,888 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.bbregister". 190820-11:36:28,431 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190820-11:36:28,434 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-NDARINVGBXJFCXY --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer 190820-11:38:03,684 nipype.interface INFO: stdout 2019-08-20T11:38:03.683878: 190820-11:38:03,684 nipype.interface INFO: stdout 2019-08-20T11:38:03.683878:Matrix from LTA: 190820-11:38:03,684 nipype.interface INFO: stdout 2019-08-20T11:38:03.683878: 0.99991 -0.00308 -0.01268 2.61063; 190820-11:38:03,684 nipype.interface INFO: stdout 2019-08-20T11:38:03.683878: 0.01265 -0.01140 0.99985 -20.00130; 190820-11:38:03,684 nipype.interface INFO: stdout 2019-08-20T11:38:03.683878:-0.00323 -0.99993 -0.01136 -6.24226; 190820-11:38:03,684 nipype.interface INFO: stdout 2019-08-20T11:38:03.683878: 0.00000 0.00000 0.00000 1.00000; 190820-11:38:04,700 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789: 190820-11:38:04,700 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:movvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:targvol /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:outvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:regfile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:invert 0 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:tal 0 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:talres 2 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:regheader 0 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:noresample 0 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:interp nearest (0) 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:precision float (3) 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:Gdiag_no -1 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:Synth 0 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:SynthSeed 1566435319 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789: 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:Final tkRAS-to-tkRAS Matrix is: 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789: 0.99991 -0.00308 -0.01268 2.61060; 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789: 0.01265 -0.01140 0.99985 -20.00130; 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789:-0.00323 -0.99993 -0.01136 -6.24223; 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.700789: 0.00000 0.00000 0.00000 1.00000; 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.701727: 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.701727: 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.701727:Vox2Vox Matrix is: 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.701727: 0.41663 -0.00528 0.00128 -8.90450; 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.701727:-0.00134 -0.00473 0.41664 -4.95093; 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.701727:-0.00527 -0.41661 -0.00475 76.27399; 190820-11:38:04,701 nipype.interface INFO: stdout 2019-08-20T11:38:04.701727: 0.00000 0.00000 0.00000 1.00000; 190820-11:38:10,979 nipype.interface INFO: stdout 2019-08-20T11:38:10.979535: 190820-11:38:10,979 nipype.interface INFO: stdout 2019-08-20T11:38:10.979535:Resampling 190820-11:38:10,980 nipype.interface INFO: stdout 2019-08-20T11:38:10.979535:Output registration matrix is identity 190820-11:38:10,980 nipype.interface INFO: stdout 2019-08-20T11:38:10.979535: 190820-11:38:10,980 nipype.interface INFO: stdout 2019-08-20T11:38:10.979535:mri_vol2vol done 190820-11:38:34,973 nipype.interface INFO: stdout 2019-08-20T11:38:34.973012: 190820-11:38:34,973 nipype.interface INFO: stdout 2019-08-20T11:38:34.973012:Matrix from LTA: 190820-11:38:34,973 nipype.interface INFO: stdout 2019-08-20T11:38:34.973012: 1.00000 -0.00000 -0.00131 2.43620; 190820-11:38:34,973 nipype.interface INFO: stdout 2019-08-20T11:38:34.973012: 0.00131 -0.02764 0.99962 -19.78209; 190820-11:38:34,973 nipype.interface INFO: stdout 2019-08-20T11:38:34.973012:-0.00004 -0.99962 -0.02764 -6.17960; 190820-11:38:34,973 nipype.interface INFO: stdout 2019-08-20T11:38:34.973012: 0.00000 0.00000 0.00000 1.00000; 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181: 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:movvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:targvol /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:outvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:regfile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:invert 0 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:tal 0 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:talres 2 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:regheader 0 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:noresample 0 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:interp nearest (0) 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:precision float (3) 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:Gdiag_no -1 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:Synth 0 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:SynthSeed 1566534056 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181: 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:Final tkRAS-to-tkRAS Matrix is: 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181: 1.00000 0.00000 -0.00131 2.43620; 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181: 0.00131 -0.02764 0.99962 -19.78210; 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181:-0.00004 -0.99962 -0.02764 -6.17960; 190820-11:38:35,565 nipype.interface INFO: stdout 2019-08-20T11:38:35.565181: 0.00000 0.00000 0.00000 1.00000; 190820-11:38:35,566 nipype.interface INFO: stdout 2019-08-20T11:38:35.566059: 190820-11:38:35,566 nipype.interface INFO: stdout 2019-08-20T11:38:35.566059: 190820-11:38:35,566 nipype.interface INFO: stdout 2019-08-20T11:38:35.566059:Vox2Vox Matrix is: 190820-11:38:35,566 nipype.interface INFO: stdout 2019-08-20T11:38:35.566059: 0.41667 -0.00054 -0.00000 -9.27861; 190820-11:38:35,566 nipype.interface INFO: stdout 2019-08-20T11:38:35.566059:-0.00002 -0.01152 0.41651 -4.26197; 190820-11:38:35,566 nipype.interface INFO: stdout 2019-08-20T11:38:35.566059:-0.00054 -0.41651 -0.01152 76.61429; 190820-11:38:35,566 nipype.interface INFO: stdout 2019-08-20T11:38:35.566059: 0.00000 0.00000 0.00000 1.00000; 190820-11:38:39,108 nipype.interface INFO: stdout 2019-08-20T11:38:39.107950: 190820-11:38:39,108 nipype.interface INFO: stdout 2019-08-20T11:38:39.107950:Resampling 190820-11:38:39,108 nipype.interface INFO: stdout 2019-08-20T11:38:39.107950:Output registration matrix is identity 190820-11:38:39,108 nipype.interface INFO: stdout 2019-08-20T11:38:39.107950: 190820-11:38:39,108 nipype.interface INFO: stdout 2019-08-20T11:38:39.107950:mri_vol2vol done 190820-11:39:28,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.bbregister". 190820-11:39:34,421 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190820-11:39:34,442 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190820-11:39:34,783 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190820-11:39:36,97 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190820-11:39:36,98 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190820-11:39:36,444 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190820-11:39:38,100 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190820-11:39:38,102 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190820-11:39:38,103 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190820-11:39:38,103 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190820-11:39:38,104 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190820-11:39:38,104 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190820-11:39:38,104 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190820-11:39:38,106 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190820-11:39:40,102 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190820-11:39:40,103 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190820-11:39:40,117 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190820-11:39:44,49 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190820-11:39:44,50 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190820-11:39:44,432 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190820-11:39:46,453 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190820-11:39:47,300 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_concat". 190820-11:39:47,301 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190820-11:39:47,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta_concat". 190820-11:39:48,497 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190820-11:39:48,499 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190820-11:39:48,505 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190820-11:39:48,506 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190820-11:39:48,549 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister". 190820-11:39:48,551 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.dat --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-NDARINVGBXJFCXY 190820-11:39:48,557 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190820-11:39:48,558 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190820-11:39:49,33 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190820-11:39:49,44 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190820-11:39:49,71 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190820-11:39:50,676 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190820-11:39:50,678 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190820-11:39:50,679 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190820-11:39:50,679 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190820-11:39:50,679 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190820-11:39:50,680 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190820-11:39:50,680 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190820-11:39:50,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190820-11:39:50,688 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190820-11:39:50,690 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:39:50,697 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190820-11:39:50,699 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:39:52,390 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190820-11:39:52,436 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190820-11:39:52,858 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190820-11:39:52,859 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190820-11:39:52,864 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190820-11:39:56,384 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190820-11:39:56,387 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-NDARINVGBXJFCXY --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer 190820-11:41:59,817 nipype.interface INFO: stdout 2019-08-20T11:41:59.817776: 190820-11:41:59,818 nipype.interface INFO: stdout 2019-08-20T11:41:59.817776:Matrix from LTA: 190820-11:41:59,818 nipype.interface INFO: stdout 2019-08-20T11:41:59.817776: 0.99999 -0.00130 -0.00465 2.33602; 190820-11:41:59,818 nipype.interface INFO: stdout 2019-08-20T11:41:59.817776: 0.00465 -0.00442 0.99998 -19.29459; 190820-11:41:59,818 nipype.interface INFO: stdout 2019-08-20T11:41:59.817776:-0.00132 -0.99999 -0.00441 -6.25390; 190820-11:41:59,818 nipype.interface INFO: stdout 2019-08-20T11:41:59.817776: 0.00000 0.00000 0.00000 1.00000; 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136: 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:movvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:targvol /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:outvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:regfile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:invert 0 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:tal 0 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:talres 2 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:regheader 0 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:noresample 0 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:interp nearest (0) 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:precision float (3) 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:Gdiag_no -1 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:Synth 0 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:SynthSeed 1566384719 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136: 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:Final tkRAS-to-tkRAS Matrix is: 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136: 0.99999 -0.00130 -0.00465 2.33601; 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136: 0.00465 -0.00442 0.99998 -19.29457; 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136:-0.00132 -0.99999 -0.00441 -6.25388; 190820-11:42:00,401 nipype.interface INFO: stdout 2019-08-20T11:42:00.401136: 0.00000 0.00000 0.00000 1.00000; 190820-11:42:00,402 nipype.interface INFO: stdout 2019-08-20T11:42:00.402061: 190820-11:42:00,402 nipype.interface INFO: stdout 2019-08-20T11:42:00.402061: 190820-11:42:00,402 nipype.interface INFO: stdout 2019-08-20T11:42:00.402061:Vox2Vox Matrix is: 190820-11:42:00,402 nipype.interface INFO: stdout 2019-08-20T11:42:00.402061: 0.41666 -0.00194 0.00054 -9.12725; 190820-11:42:00,402 nipype.interface INFO: stdout 2019-08-20T11:42:00.402061:-0.00055 -0.00184 0.41666 -5.42121; 190820-11:42:00,402 nipype.interface INFO: stdout 2019-08-20T11:42:00.402061:-0.00194 -0.41666 -0.00184 75.77628; 190820-11:42:00,402 nipype.interface INFO: stdout 2019-08-20T11:42:00.402061: 0.00000 0.00000 0.00000 1.00000; 190820-11:42:03,955 nipype.interface INFO: stdout 2019-08-20T11:42:03.955528: 190820-11:42:03,955 nipype.interface INFO: stdout 2019-08-20T11:42:03.955528:Resampling 190820-11:42:03,955 nipype.interface INFO: stdout 2019-08-20T11:42:03.955528:Output registration matrix is identity 190820-11:42:03,955 nipype.interface INFO: stdout 2019-08-20T11:42:03.955528: 190820-11:42:03,955 nipype.interface INFO: stdout 2019-08-20T11:42:03.955528:mri_vol2vol done 190820-11:42:29,76 nipype.interface INFO: stdout 2019-08-20T11:42:29.076659: 190820-11:42:29,77 nipype.interface INFO: stdout 2019-08-20T11:42:29.076659:Matrix from LTA: 190820-11:42:29,77 nipype.interface INFO: stdout 2019-08-20T11:42:29.076659: 0.99999 -0.00021 -0.00401 2.50922; 190820-11:42:29,77 nipype.interface INFO: stdout 2019-08-20T11:42:29.076659: 0.00400 -0.02781 0.99961 -20.46782; 190820-11:42:29,77 nipype.interface INFO: stdout 2019-08-20T11:42:29.076659:-0.00032 -0.99961 -0.02781 -6.41827; 190820-11:42:29,77 nipype.interface INFO: stdout 2019-08-20T11:42:29.076659: 0.00000 0.00000 0.00000 1.00000; 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976: 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:movvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:targvol /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:outvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:regfile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:invert 0 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:tal 0 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:talres 2 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:regheader 0 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:noresample 0 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:interp nearest (0) 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:precision float (3) 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:Gdiag_no -1 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:Synth 0 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:SynthSeed 1566637879 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976: 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:Final tkRAS-to-tkRAS Matrix is: 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976: 0.99999 -0.00021 -0.00401 2.50919; 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976: 0.00400 -0.02781 0.99961 -20.46777; 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976:-0.00032 -0.99961 -0.02781 -6.41825; 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.668976: 0.00000 0.00000 0.00000 1.00000; 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.669899: 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.669899: 190820-11:42:29,669 nipype.interface INFO: stdout 2019-08-20T11:42:29.669899:Vox2Vox Matrix is: 190820-11:42:29,670 nipype.interface INFO: stdout 2019-08-20T11:42:29.669899: 0.41666 -0.00167 0.00009 -9.17613; 190820-11:42:29,670 nipype.interface INFO: stdout 2019-08-20T11:42:29.669899:-0.00014 -0.01159 0.41651 -4.13799; 190820-11:42:29,670 nipype.interface INFO: stdout 2019-08-20T11:42:29.669899:-0.00167 -0.41650 -0.01159 76.48042; 190820-11:42:29,670 nipype.interface INFO: stdout 2019-08-20T11:42:29.669899: 0.00000 0.00000 0.00000 1.00000; 190820-11:42:33,470 nipype.interface INFO: stdout 2019-08-20T11:42:33.470270: 190820-11:42:33,470 nipype.interface INFO: stdout 2019-08-20T11:42:33.470270:Resampling 190820-11:42:33,470 nipype.interface INFO: stdout 2019-08-20T11:42:33.470270:Output registration matrix is identity 190820-11:42:33,470 nipype.interface INFO: stdout 2019-08-20T11:42:33.470270: 190820-11:42:33,471 nipype.interface INFO: stdout 2019-08-20T11:42:33.470270:mri_vol2vol done 190820-11:43:13,813 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190820-11:43:16,397 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_concat". 190820-11:43:16,399 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190820-11:43:16,416 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister". 190820-11:43:16,418 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.dat --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-NDARINVGBXJFCXY 190820-11:43:16,968 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta_concat". 190820-11:43:17,454 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/mask_t1w_tfm". 190820-11:43:17,456 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:43:18,639 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190820-11:43:18,640 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190820-11:43:19,36 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190820-11:43:19,38 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190820-11:43:19,221 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190820-11:43:19,620 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190820-11:43:20,649 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190820-11:43:20,651 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:43:22,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190820-11:43:22,808 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190820-11:43:22,809 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:43:25,47 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190820-11:43:27,853 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/mask_t1w_tfm". 190820-11:43:27,855 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:43:34,975 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.t1_seg". 190820-11:43:37,529 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.mask_t1w_tfm". 190820-11:43:46,147 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.mask_t1w_tfm". 190820-11:43:51,815 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.bbregister". 190820-11:43:55,445 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_derivatives_wf/lut_t1_seg". 190820-11:43:55,447 nipype.workflow INFO: [Node] Running "lut_t1_seg" ("nipype.interfaces.utility.wrappers.Function") 190820-11:43:55,456 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/wm_roi". 190820-11:43:55,457 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:43:55,467 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_roi". 190820-11:43:55,468 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:43:55,478 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tpms_add_csf_wm". 190820-11:43:55,479 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190820-11:43:55,515 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.fmap_unwarp_report_wf.map_seg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/fmap_unwarp_report_wf/map_seg". 190820-11:43:55,517 nipype.workflow INFO: [Node] Running "map_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:43:55,533 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/wm_roi". 190820-11:43:55,534 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:43:58,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg". 190820-11:44:00,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_roi". 190820-11:44:00,671 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.boldmask_to_t1w" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/boldmask_to_t1w". 190820-11:44:00,673 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:44:00,680 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-11:44:00,682 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_trans_corrected_brain_mask_maths_trans_dil.nii.gz 190820-11:44:00,689 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.boldmask_to_t1w" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/boldmask_to_t1w". 190820-11:44:00,690 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:44:02,767 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-11:44:02,769 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_trans_corrected_brain_mask_maths_trans_dil.nii.gz 190820-11:44:02,793 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-11:44:04,230 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tpms_add_csf_wm". 190820-11:44:04,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-11:44:18,9 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tcc_tfm". 190820-11:44:18,11 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:44:19,812 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_tfm". 190820-11:44:19,855 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_tfm". 190820-11:44:19,856 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:44:19,862 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_roi". 190820-11:44:19,864 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:44:19,873 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_roi". 190820-11:44:19,875 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:44:22,27 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tcc_msk". 190820-11:44:22,28 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:44:22,61 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_tfm". 190820-11:44:22,263 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_msk". 190820-11:44:25,579 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_roi". 190820-11:44:25,866 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcompcor" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tcompcor". 190820-11:44:25,868 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190820-11:44:25,881 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_msk". 190820-11:44:25,882 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:44:26,128 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_msk". 190820-11:44:26,603 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_roi". 190820-11:44:26,721 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_roi". 190820-11:44:27,434 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.boldmask_to_t1w". 190820-11:44:27,572 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.boldmask_to_t1w". 190820-11:44:27,657 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tcc_tfm". 190820-11:44:27,658 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:44:29,45 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_tfm". 190820-11:44:32,482 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/wm_tfm". 190820-11:44:32,484 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/wm_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:44:32,490 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/wm_tfm". 190820-11:44:32,492 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/wm_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:44:32,509 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_tfm". 190820-11:44:32,511 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:44:32,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tpms_add_csf_wm". 190820-11:44:32,532 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190820-11:44:32,543 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.fmap_unwarp_report_wf.map_seg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/fmap_unwarp_report_wf/map_seg". 190820-11:44:32,544 nipype.workflow INFO: [Node] Running "map_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:44:34,640 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_tfm". 190820-11:44:34,644 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_tfm". 190820-11:44:34,680 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_tfm". 190820-11:44:34,741 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tcc_msk". 190820-11:44:34,742 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:44:34,946 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_msk". 190820-11:44:36,386 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/wm_msk". 190820-11:44:36,388 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:44:36,442 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/wm_msk". 190820-11:44:36,444 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:44:36,453 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_msk". 190820-11:44:36,454 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:44:36,639 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_msk". 190820-11:44:36,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_msk". 190820-11:44:36,686 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_msk". 190820-11:44:39,834 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcompcor" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tcompcor". 190820-11:44:39,836 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190820-11:44:41,95 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tpms_add_csf_wm". 190820-11:44:41,579 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/wm_roi". 190820-11:44:41,580 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:44:41,590 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_roi". 190820-11:44:41,591 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:44:41,606 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tpms_add_csf_wm". 190820-11:44:41,607 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190820-11:44:41,715 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.fmap_unwarp_report_wf.map_seg". 190820-11:44:43,653 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.signals" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/signals". 190820-11:44:43,654 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190820-11:44:45,787 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.fmap_unwarp_report_wf.sel_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/fmap_unwarp_report_wf/sel_wm". 190820-11:44:45,788 nipype.workflow INFO: [Node] Running "sel_wm" ("nipype.interfaces.utility.wrappers.Function") 190820-11:44:45,905 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.fmap_unwarp_report_wf.sel_wm". 190820-11:44:47,512 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_roi". 190820-11:44:49,662 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.fmap_unwarp_report_wf.bold_rpt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/fmap_unwarp_report_wf/bold_rpt". 190820-11:44:49,663 nipype.workflow INFO: [Node] Running "bold_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190820-11:44:49,673 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.signals" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/signals". 190820-11:44:49,674 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190820-11:44:51,122 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_roi". 190820-11:44:52,958 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tpms_add_csf_wm". 190820-11:44:53,802 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_tfm". 190820-11:44:53,804 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:44:55,968 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_roi". 190820-11:44:55,970 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:45:00,141 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_tfm". 190820-11:45:04,34 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_msk". 190820-11:45:04,36 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:45:04,329 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_msk". 190820-11:45:10,189 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_roi". 190820-11:45:10,191 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:45:19,204 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_roi". 190820-11:45:22,259 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acompcor" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acompcor". 190820-11:45:22,261 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190820-11:45:28,900 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.fmap_unwarp_report_wf.map_seg". 190820-11:45:32,373 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.fmap_unwarp_report_wf.sel_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/fmap_unwarp_report_wf/sel_wm". 190820-11:45:32,375 nipype.workflow INFO: [Node] Running "sel_wm" ("nipype.interfaces.utility.wrappers.Function") 190820-11:45:32,493 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.fmap_unwarp_report_wf.sel_wm". 190820-11:45:36,382 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_roi". 190820-11:45:36,423 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.fmap_unwarp_report_wf.bold_rpt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/fmap_unwarp_report_wf/bold_rpt". 190820-11:45:36,424 nipype.workflow INFO: [Node] Running "bold_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190820-11:45:38,624 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_tfm". 190820-11:45:38,626 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:45:45,933 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_tfm". 190820-11:45:48,613 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_msk". 190820-11:45:48,615 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:45:48,914 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_msk". 190820-11:45:50,366 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_roi". 190820-11:45:54,723 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/wm_roi". 190820-11:45:54,724 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:45:54,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_roi". 190820-11:45:54,735 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:45:59,458 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcompcor". 190820-11:46:02,283 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_roi". 190820-11:46:02,885 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tcc_metadata_fmt". 190820-11:46:02,887 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190820-11:46:03,758 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_metadata_fmt". 190820-11:46:06,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acompcor" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acompcor". 190820-11:46:06,958 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190820-11:46:09,156 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.rois_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/rois_plot". 190820-11:46:09,158 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190820-11:46:34,674 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_roi". 190820-11:46:37,794 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tpms_add_csf_wm". 190820-11:46:37,795 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190820-11:47:10,991 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcompcor". 190820-11:47:13,974 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tcc_metadata_fmt". 190820-11:47:13,975 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190820-11:47:14,641 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_metadata_fmt". 190820-11:47:14,659 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.signals". 190820-11:47:15,658 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.signals". 190820-11:47:15,688 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tpms_add_csf_wm". 190820-11:47:17,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.fmap_unwarp_report_wf.bold_rpt". 190820-11:47:18,984 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_roi" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_roi". 190820-11:47:18,985 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190820-11:47:19,26 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acompcor". 190820-11:47:19,53 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.seg_rpt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/seg_rpt". 190820-11:47:19,54 nipype.workflow INFO: [Node] Running "seg_rpt" ("niworkflows.interfaces.masks.ROIsPlot") 190820-11:47:19,75 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190820-11:47:19,77 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190820-11:47:19,83 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190820-11:47:19,84 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190820-11:47:19,873 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190820-11:47:19,876 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190820-11:47:22,147 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acompcor". 190820-11:47:22,407 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_metadata_fmt". 190820-11:47:22,409 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190820-11:47:24,668 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_metadata_fmt". 190820-11:47:27,117 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.rois_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/rois_plot". 190820-11:47:27,119 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190820-11:47:28,755 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190820-11:47:28,757 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190820-11:47:28,758 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190820-11:47:28,758 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190820-11:47:28,759 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190820-11:47:28,759 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190820-11:47:28,759 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190820-11:47:28,761 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190820-11:47:28,787 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.compcor_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/compcor_plot". 190820-11:47:28,788 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190820-11:47:32,154 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.compcor_plot". 190820-11:47:32,591 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.fmap_unwarp_report_wf.bold_rpt". 190820-11:47:36,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/conf_corr_plot". 190820-11:47:36,669 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190820-11:47:36,678 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.model_expansion" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/model_expansion". 190820-11:47:36,679 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190820-11:47:38,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190820-11:47:38,519 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190820-11:47:38,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190820-11:47:38,545 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.model_expansion". 190820-11:47:46,576 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.rois_plot". 190820-11:47:47,118 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_roi". 190820-11:47:48,877 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_metadata_fmt". 190820-11:47:48,878 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190820-11:47:50,881 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_metadata_fmt". 190820-11:47:58,307 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.spike_regressors" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/spike_regressors". 190820-11:47:58,309 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190820-11:47:58,319 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.compcor_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/compcor_plot". 190820-11:47:58,320 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190820-11:47:59,657 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.spike_regressors". 190820-11:48:00,625 nipype.interface INFO: stdout 2019-08-20T11:48:00.624988: 190820-11:48:00,625 nipype.interface INFO: stdout 2019-08-20T11:48:00.624988:Matrix from LTA: 190820-11:48:00,625 nipype.interface INFO: stdout 2019-08-20T11:48:00.624988: 0.99998 0.00028 -0.00574 2.54893; 190820-11:48:00,625 nipype.interface INFO: stdout 2019-08-20T11:48:00.624988: 0.00574 -0.01292 0.99990 -20.15186; 190820-11:48:00,625 nipype.interface INFO: stdout 2019-08-20T11:48:00.624988: 0.00020 -0.99992 -0.01292 -5.99727; 190820-11:48:00,625 nipype.interface INFO: stdout 2019-08-20T11:48:00.624988: 0.00000 0.00000 0.00000 1.00000; 190820-11:48:00,938 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.compcor_plot". 190820-11:48:01,204 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.conf_corr_plot". 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056: 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:movvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:targvol /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/mri/brainmask.mgz 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:outvol /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:regfile /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:invert 0 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:tal 0 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:talres 2 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:regheader 0 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:noresample 0 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:interp nearest (0) 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:precision float (3) 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:Gdiag_no -1 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:Synth 0 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:SynthSeed 1566338245 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056: 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056:Final tkRAS-to-tkRAS Matrix is: 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056: 0.99998 0.00028 -0.00574 2.54892; 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056: 0.00574 -0.01292 0.99990 -20.15187; 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056: 0.00020 -0.99992 -0.01292 -5.99727; 190820-11:48:01,450 nipype.interface INFO: stdout 2019-08-20T11:48:01.450056: 0.00000 0.00000 0.00000 1.00000; 190820-11:48:01,451 nipype.interface INFO: stdout 2019-08-20T11:48:01.450973: 190820-11:48:01,451 nipype.interface INFO: stdout 2019-08-20T11:48:01.450973: 190820-11:48:01,451 nipype.interface INFO: stdout 2019-08-20T11:48:01.450973:Vox2Vox Matrix is: 190820-11:48:01,451 nipype.interface INFO: stdout 2019-08-20T11:48:01.450973: 0.41666 -0.00239 -0.00012 -9.07358; 190820-11:48:01,451 nipype.interface INFO: stdout 2019-08-20T11:48:01.450973: 0.00008 -0.00538 0.41663 -5.15182; 190820-11:48:01,451 nipype.interface INFO: stdout 2019-08-20T11:48:01.450973:-0.00239 -0.41662 -0.00538 75.92657; 190820-11:48:01,451 nipype.interface INFO: stdout 2019-08-20T11:48:01.450973: 0.00000 0.00000 0.00000 1.00000; 190820-11:48:04,414 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/conf_corr_plot". 190820-11:48:04,415 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190820-11:48:04,447 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.model_expansion" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/model_expansion". 190820-11:48:04,448 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190820-11:48:06,275 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.model_expansion". 190820-11:48:06,504 nipype.interface INFO: stdout 2019-08-20T11:48:06.504416: 190820-11:48:06,504 nipype.interface INFO: stdout 2019-08-20T11:48:06.504416:Resampling 190820-11:48:06,504 nipype.interface INFO: stdout 2019-08-20T11:48:06.504416:Output registration matrix is identity 190820-11:48:06,504 nipype.interface INFO: stdout 2019-08-20T11:48:06.504416: 190820-11:48:06,504 nipype.interface INFO: stdout 2019-08-20T11:48:06.504416:mri_vol2vol done 190820-11:48:07,226 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat". 190820-11:48:07,228 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190820-11:48:07,282 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.seg_rpt". 190820-11:48:07,816 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_concat". 190820-11:48:13,211 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.rois_plot". 190820-11:48:18,661 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190820-11:48:18,662 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190820-11:48:18,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190820-11:48:18,669 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190820-11:48:19,214 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190820-11:48:19,217 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190820-11:48:20,645 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.spike_regressors" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/spike_regressors". 190820-11:48:20,646 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190820-11:48:21,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.spike_regressors". 190820-11:48:22,320 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.conf_corr_plot". 190820-11:48:22,566 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.registration" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration". 190820-11:48:22,568 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190820-11:48:24,606 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190820-11:48:24,608 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:48:26,26 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190820-11:48:28,608 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190820-11:48:28,610 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:48:30,22 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190820-11:48:34,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm". 190820-11:48:34,520 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:49:00,848 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.mask_t1w_tfm". 190820-11:49:04,291 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.boldmask_to_t1w" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/boldmask_to_t1w". 190820-11:49:04,293 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:49:32,631 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.boldmask_to_t1w". 190820-11:49:38,927 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-11:49:38,929 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_trans_corrected_brain_mask_maths_trans_dil.nii.gz 190820-11:49:40,913 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-11:49:51,856 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/wm_tfm". 190820-11:49:51,858 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/wm_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:49:53,716 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_tfm". 190820-11:49:57,583 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/wm_msk". 190820-11:49:57,585 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:49:57,765 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_msk". 190820-11:50:01,370 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tcc_tfm". 190820-11:50:01,372 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:50:02,312 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.bbregister". 190820-11:50:03,293 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_tfm". 190820-11:50:08,530 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tcc_msk". 190820-11:50:08,532 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:50:08,543 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_tfm". 190820-11:50:08,544 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:50:08,759 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_msk". 190820-11:50:10,254 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_tfm". 190820-11:50:12,238 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcompcor" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tcompcor". 190820-11:50:12,240 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190820-11:50:12,249 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_msk". 190820-11:50:12,250 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:50:12,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_msk". 190820-11:50:16,216 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_tfm". 190820-11:50:16,218 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:50:18,85 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_tfm". 190820-11:50:20,56 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.signals" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/signals". 190820-11:50:20,58 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190820-11:50:42,344 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcompcor". 190820-11:50:46,82 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tcc_metadata_fmt". 190820-11:50:46,83 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190820-11:50:46,594 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_metadata_fmt". 190820-11:50:50,18 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_msk". 190820-11:50:50,20 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:50:50,236 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_msk". 190820-11:50:52,756 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.signals". 190820-11:50:55,510 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.fmap_unwarp_report_wf.map_seg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/fmap_unwarp_report_wf/map_seg". 190820-11:50:55,511 nipype.workflow INFO: [Node] Running "map_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:50:57,423 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.rois_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/rois_plot". 190820-11:50:57,424 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190820-11:51:46,981 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.fmap_unwarp_report_wf.map_seg". 190820-11:51:49,437 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acompcor" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acompcor". 190820-11:51:49,439 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190820-11:52:01,298 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.rois_plot". 190820-11:52:05,300 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.fmap_unwarp_report_wf.sel_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/fmap_unwarp_report_wf/sel_wm". 190820-11:52:05,301 nipype.workflow INFO: [Node] Running "sel_wm" ("nipype.interfaces.utility.wrappers.Function") 190820-11:52:05,454 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.fmap_unwarp_report_wf.sel_wm". 190820-11:52:09,126 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.fmap_unwarp_report_wf.bold_rpt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/fmap_unwarp_report_wf/bold_rpt". 190820-11:52:09,128 nipype.workflow INFO: [Node] Running "bold_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190820-11:52:24,200 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acompcor". 190820-11:52:29,45 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_metadata_fmt". 190820-11:52:29,46 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190820-11:52:31,636 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_metadata_fmt". 190820-11:52:34,804 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.compcor_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/compcor_plot". 190820-11:52:34,805 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190820-11:52:37,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.compcor_plot". 190820-11:52:55,800 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190820-11:52:55,802 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190820-11:52:56,617 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190820-11:53:08,306 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/conf_corr_plot". 190820-11:53:08,307 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190820-11:53:08,569 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.fmap_unwarp_report_wf.bold_rpt". 190820-11:53:12,125 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.model_expansion" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/model_expansion". 190820-11:53:12,127 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190820-11:53:14,238 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.model_expansion". 190820-11:53:16,171 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.spike_regressors" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/spike_regressors". 190820-11:53:16,173 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190820-11:53:17,677 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.spike_regressors". 190820-11:53:29,357 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190820-11:53:29,359 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190820-11:53:30,100 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190820-11:53:33,136 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190820-11:53:33,139 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190820-11:53:33,139 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190820-11:53:33,139 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190820-11:53:33,140 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190820-11:53:33,141 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190820-11:53:33,141 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190820-11:53:33,142 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190820-11:53:35,131 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190820-11:53:35,132 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190820-11:53:35,139 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190820-11:53:39,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.conf_corr_plot". 190820-11:53:45,993 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat". 190820-11:53:45,994 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINVGBXJFCXY.lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190820-11:53:46,972 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_concat". 190820-11:53:49,596 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190820-11:53:49,598 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190820-11:53:49,604 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190820-11:53:49,606 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190820-11:53:50,358 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190820-11:53:50,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190820-11:53:53,523 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190820-11:53:53,524 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:53:53,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190820-11:53:53,533 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/applyrefined/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:53:56,384 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190820-11:53:56,417 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190820-11:54:01,265 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm". 190820-11:54:01,267 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:54:01,274 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/wm_tfm". 190820-11:54:01,276 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/wm_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:54:03,133 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_tfm". 190820-11:54:05,143 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/wm_msk". 190820-11:54:05,144 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:54:05,354 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_msk". 190820-11:54:09,97 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tcc_tfm". 190820-11:54:09,98 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:54:11,110 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_tfm". 190820-11:54:13,101 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tcc_msk". 190820-11:54:13,103 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:54:13,300 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_msk". 190820-11:54:17,149 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcompcor" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tcompcor". 190820-11:54:17,150 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190820-11:54:29,152 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.mask_t1w_tfm". 190820-11:54:31,75 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.boldmask_to_t1w" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/boldmask_to_t1w". 190820-11:54:31,77 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-11:54:46,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcompcor". 190820-11:54:49,140 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190820-11:54:49,142 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_trans_corrected_brain_mask_maths_trans_dil.nii.gz 190820-11:54:51,147 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-11:54:53,147 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tcc_metadata_fmt". 190820-11:54:53,148 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190820-11:54:53,694 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_metadata_fmt". 190820-11:54:57,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_tfm". 190820-11:54:57,235 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:54:59,24 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.boldmask_to_t1w". 190820-11:54:59,175 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_tfm". 190820-11:55:03,325 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_msk". 190820-11:55:03,326 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:55:03,337 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_tfm". 190820-11:55:03,338 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_roi/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:55:03,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_msk". 190820-11:55:05,10 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_tfm". 190820-11:55:08,747 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_msk". 190820-11:55:08,748 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-11:55:08,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.fmap_unwarp_report_wf.map_seg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/fmap_unwarp_report_wf/map_seg". 190820-11:55:08,761 nipype.workflow INFO: [Node] Running "map_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190820-11:55:08,961 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_msk". 190820-11:55:12,539 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.signals" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/signals". 190820-11:55:12,540 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190820-11:55:45,288 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.signals". 190820-11:55:54,310 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.rois_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/rois_plot". 190820-11:55:54,312 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190820-11:55:59,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.fmap_unwarp_report_wf.map_seg". 190820-11:56:02,220 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acompcor" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acompcor". 190820-11:56:02,222 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190820-11:56:36,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acompcor". 190820-11:56:40,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_metadata_fmt". 190820-11:56:40,106 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190820-11:56:42,667 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_metadata_fmt". 190820-11:56:45,925 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.compcor_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/compcor_plot". 190820-11:56:45,926 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190820-11:56:49,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.compcor_plot". 190820-11:56:56,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.rois_plot". 190820-11:57:06,613 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.fmap_unwarp_report_wf.sel_wm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/fmap_unwarp_report_wf/sel_wm". 190820-11:57:06,614 nipype.workflow INFO: [Node] Running "sel_wm" ("nipype.interfaces.utility.wrappers.Function") 190820-11:57:06,716 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.fmap_unwarp_report_wf.sel_wm". 190820-11:57:18,83 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/conf_corr_plot". 190820-11:57:18,84 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190820-11:57:20,86 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.model_expansion" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/model_expansion". 190820-11:57:20,87 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190820-11:57:22,485 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.model_expansion". 190820-11:57:25,892 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.spike_regressors" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/spike_regressors". 190820-11:57:25,894 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190820-11:57:27,697 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.spike_regressors". 190820-11:57:37,356 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.fmap_unwarp_report_wf.bold_rpt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/fmap_unwarp_report_wf/bold_rpt". 190820-11:57:37,357 nipype.workflow INFO: [Node] Running "bold_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190820-11:57:49,864 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.conf_corr_plot". 190820-11:58:37,901 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.fmap_unwarp_report_wf.bold_rpt". 190820-13:21:35,706 nipype.workflow INFO: [Node] Finished "_midthickness0". 190820-13:22:52,328 nipype.workflow INFO: [Node] Finished "_midthickness1". 190820-13:22:55,179 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness". 190820-13:22:55,181 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190820-13:22:55,182 nipype.workflow INFO: [Node] Cached "_midthickness0" - collecting precomputed outputs 190820-13:22:55,182 nipype.workflow INFO: [Node] "_midthickness0" found cached. 190820-13:22:55,183 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190820-13:22:55,184 nipype.workflow INFO: [Node] Cached "_midthickness1" - collecting precomputed outputs 190820-13:22:55,184 nipype.workflow INFO: [Node] "_midthickness1" found cached. 190820-13:22:55,185 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness". 190820-13:22:57,204 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/save_midthickness". 190820-13:22:57,206 nipype.workflow INFO: [Node] Running "save_midthickness" ("nipype.interfaces.io.DataSink") 190820-13:22:57,551 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness". 190820-13:23:04,379 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190820-13:23:04,381 nipype.workflow INFO: [Node] Running "_fs_2_gii0" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/surf/lh.smoothwm /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0/lh.smoothwm_converted.gii 190820-13:23:04,387 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190820-13:23:04,389 nipype.workflow INFO: [Node] Running "_fs_2_gii1" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/surf/rh.smoothwm /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1/rh.smoothwm_converted.gii 190820-13:23:04,396 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190820-13:23:04,398 nipype.workflow INFO: [Node] Running "_fs_2_gii2" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/surf/lh.pial /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2/lh.pial_converted.gii 190820-13:23:04,405 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190820-13:23:04,407 nipype.workflow INFO: [Node] Running "_fs_2_gii3" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/surf/rh.pial /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3/rh.pial_converted.gii 190820-13:23:19,753 nipype.workflow INFO: [Node] Finished "_fs_2_gii3". 190820-13:23:19,755 nipype.workflow INFO: [Node] Finished "_fs_2_gii2". 190820-13:23:19,829 nipype.workflow INFO: [Node] Finished "_fs_2_gii1". 190820-13:23:19,849 nipype.workflow INFO: [Node] Finished "_fs_2_gii0". 190820-13:23:22,418 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190820-13:23:22,420 nipype.workflow INFO: [Node] Running "_fs_2_gii4" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/surf/lh.inflated /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4/lh.inflated_converted.gii 190820-13:23:22,426 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190820-13:23:22,428 nipype.workflow INFO: [Node] Running "_fs_2_gii5" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/surf/rh.inflated /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5/rh.inflated_converted.gii 190820-13:23:22,449 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190820-13:23:22,451 nipype.workflow INFO: [Node] Running "_fs_2_gii6" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/surf/lh.midthickness /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6/lh.midthickness_converted.gii 190820-13:23:22,467 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190820-13:23:22,469 nipype.workflow INFO: [Node] Running "_fs_2_gii7" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINVGBXJFCXY/surf/rh.midthickness /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7/rh.midthickness_converted.gii 190820-13:23:37,790 nipype.workflow INFO: [Node] Finished "_fs_2_gii4". 190820-13:23:37,866 nipype.workflow INFO: [Node] Finished "_fs_2_gii7". 190820-13:23:37,901 nipype.workflow INFO: [Node] Finished "_fs_2_gii5". 190820-13:23:38,37 nipype.workflow INFO: [Node] Finished "_fs_2_gii6". 190820-13:23:40,453 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii". 190820-13:23:40,456 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190820-13:23:40,457 nipype.workflow INFO: [Node] Cached "_fs_2_gii0" - collecting precomputed outputs 190820-13:23:40,457 nipype.workflow INFO: [Node] "_fs_2_gii0" found cached. 190820-13:23:40,458 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190820-13:23:40,459 nipype.workflow INFO: [Node] Cached "_fs_2_gii1" - collecting precomputed outputs 190820-13:23:40,459 nipype.workflow INFO: [Node] "_fs_2_gii1" found cached. 190820-13:23:40,459 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190820-13:23:40,460 nipype.workflow INFO: [Node] Cached "_fs_2_gii2" - collecting precomputed outputs 190820-13:23:40,460 nipype.workflow INFO: [Node] "_fs_2_gii2" found cached. 190820-13:23:40,461 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190820-13:23:40,462 nipype.workflow INFO: [Node] Cached "_fs_2_gii3" - collecting precomputed outputs 190820-13:23:40,462 nipype.workflow INFO: [Node] "_fs_2_gii3" found cached. 190820-13:23:40,463 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190820-13:23:40,463 nipype.workflow INFO: [Node] Cached "_fs_2_gii4" - collecting precomputed outputs 190820-13:23:40,463 nipype.workflow INFO: [Node] "_fs_2_gii4" found cached. 190820-13:23:40,464 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190820-13:23:40,465 nipype.workflow INFO: [Node] Cached "_fs_2_gii5" - collecting precomputed outputs 190820-13:23:40,465 nipype.workflow INFO: [Node] "_fs_2_gii5" found cached. 190820-13:23:40,466 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190820-13:23:40,467 nipype.workflow INFO: [Node] Cached "_fs_2_gii6" - collecting precomputed outputs 190820-13:23:40,467 nipype.workflow INFO: [Node] "_fs_2_gii6" found cached. 190820-13:23:40,467 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190820-13:23:40,508 nipype.workflow INFO: [Node] Cached "_fs_2_gii7" - collecting precomputed outputs 190820-13:23:40,508 nipype.workflow INFO: [Node] "_fs_2_gii7" found cached. 190820-13:23:40,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii". 190820-13:23:44,423 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190820-13:23:44,424 nipype.workflow INFO: [Node] Running "_fix_surfs0" ("niworkflows.interfaces.surf.NormalizeSurf") 190820-13:23:44,436 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190820-13:23:44,437 nipype.workflow INFO: [Node] Running "_fix_surfs1" ("niworkflows.interfaces.surf.NormalizeSurf") 190820-13:23:44,444 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190820-13:23:44,445 nipype.workflow INFO: [Node] Running "_fix_surfs2" ("niworkflows.interfaces.surf.NormalizeSurf") 190820-13:23:44,454 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190820-13:23:44,455 nipype.workflow INFO: [Node] Running "_fix_surfs3" ("niworkflows.interfaces.surf.NormalizeSurf") 190820-13:23:48,80 nipype.workflow INFO: [Node] Finished "_fix_surfs2". 190820-13:23:48,137 nipype.workflow INFO: [Node] Finished "_fix_surfs3". 190820-13:23:48,138 nipype.workflow INFO: [Node] Finished "_fix_surfs1". 190820-13:23:48,145 nipype.workflow INFO: [Node] Finished "_fix_surfs0". 190820-13:23:50,433 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190820-13:23:50,434 nipype.workflow INFO: [Node] Running "_fix_surfs4" ("niworkflows.interfaces.surf.NormalizeSurf") 190820-13:23:50,443 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190820-13:23:50,444 nipype.workflow INFO: [Node] Running "_fix_surfs5" ("niworkflows.interfaces.surf.NormalizeSurf") 190820-13:23:50,455 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190820-13:23:50,456 nipype.workflow INFO: [Node] Running "_fix_surfs6" ("niworkflows.interfaces.surf.NormalizeSurf") 190820-13:23:50,465 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190820-13:23:50,466 nipype.workflow INFO: [Node] Running "_fix_surfs7" ("niworkflows.interfaces.surf.NormalizeSurf") 190820-13:23:54,110 nipype.workflow INFO: [Node] Finished "_fix_surfs4". 190820-13:23:54,138 nipype.workflow INFO: [Node] Finished "_fix_surfs5". 190820-13:23:54,143 nipype.workflow INFO: [Node] Finished "_fix_surfs6". 190820-13:23:54,155 nipype.workflow INFO: [Node] Finished "_fix_surfs7". 190820-13:23:56,416 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs". 190820-13:23:56,418 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190820-13:23:56,419 nipype.workflow INFO: [Node] Cached "_fix_surfs0" - collecting precomputed outputs 190820-13:23:56,419 nipype.workflow INFO: [Node] "_fix_surfs0" found cached. 190820-13:23:56,419 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190820-13:23:56,420 nipype.workflow INFO: [Node] Cached "_fix_surfs1" - collecting precomputed outputs 190820-13:23:56,420 nipype.workflow INFO: [Node] "_fix_surfs1" found cached. 190820-13:23:56,421 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190820-13:23:56,421 nipype.workflow INFO: [Node] Cached "_fix_surfs2" - collecting precomputed outputs 190820-13:23:56,421 nipype.workflow INFO: [Node] "_fix_surfs2" found cached. 190820-13:23:56,422 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190820-13:23:56,422 nipype.workflow INFO: [Node] Cached "_fix_surfs3" - collecting precomputed outputs 190820-13:23:56,422 nipype.workflow INFO: [Node] "_fix_surfs3" found cached. 190820-13:23:56,423 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190820-13:23:56,428 nipype.workflow INFO: [Node] Cached "_fix_surfs4" - collecting precomputed outputs 190820-13:23:56,428 nipype.workflow INFO: [Node] "_fix_surfs4" found cached. 190820-13:23:56,429 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190820-13:23:56,429 nipype.workflow INFO: [Node] Cached "_fix_surfs5" - collecting precomputed outputs 190820-13:23:56,429 nipype.workflow INFO: [Node] "_fix_surfs5" found cached. 190820-13:23:56,430 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190820-13:23:56,430 nipype.workflow INFO: [Node] Cached "_fix_surfs6" - collecting precomputed outputs 190820-13:23:56,430 nipype.workflow INFO: [Node] "_fix_surfs6" found cached. 190820-13:23:56,431 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190820-13:23:56,431 nipype.workflow INFO: [Node] Cached "_fix_surfs7" - collecting precomputed outputs 190820-13:23:56,431 nipype.workflow INFO: [Node] "_fix_surfs7" found cached. 190820-13:23:56,444 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs". 190820-14:57:49,640 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.registration". 190820-14:57:54,335 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_mask". 190820-14:57:54,336 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/refine/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-14:57:54,345 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_moving". 190820-14:57:54,346 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-14:57:54,388 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190820-14:57:54,406 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-14:57:54,426 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_seg". 190820-14:57:54,428 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-14:57:56,204 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms0". 190820-14:57:56,205 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:01:27,749 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190820-15:01:30,296 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms1". 190820-15:01:30,297 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:03:22,548 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190820-15:03:41,112 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms2". 190820-15:03:41,114 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/t1_seg/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:05:01,155 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190820-15:07:11,256 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190820-15:07:12,536 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms". 190820-15:07:12,539 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms0". 190820-15:07:12,540 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190820-15:07:12,540 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190820-15:07:12,541 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms1". 190820-15:07:12,541 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190820-15:07:12,541 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190820-15:07:12,542 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms2". 190820-15:07:12,543 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190820-15:07:12,543 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190820-15:07:12,544 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190820-15:10:00,664 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190820-15:10:03,181 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/merge". 190820-15:10:03,229 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-15:10:03,274 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190820-15:10:03,286 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-15:11:54,262 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190820-15:12:03,300 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/norm_msk". 190820-15:12:03,301 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190820-15:12:12,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190820-15:12:15,753 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/norm_rpt". 190820-15:12:15,754 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190820-15:12:57,673 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190820-15:13:00,557 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.outputnode" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/outputnode". 190820-15:13:00,559 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190820-15:13:00,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.outputnode". 190820-15:13:00,573 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/lut_tpl_seg". 190820-15:13:00,574 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190820-15:13:02,491 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190820-15:13:21,356 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190820-15:13:22,325 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.merge". 190820-15:15:43,756 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.resampling_xfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/resampling_xfm". 190820-15:15:43,758 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/resampling_xfm/out.lta --src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz 190820-15:15:44,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.resampling_xfm". 190820-15:15:45,503 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190820-15:15:45,504 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-15:15:45,507 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190820-15:15:45,545 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190820-15:15:45,546 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190820-15:15:45,559 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190820-15:15:45,560 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190820-15:15:47,553 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.gen_ref". 190820-15:15:47,567 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.set_xfm_source" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/set_xfm_source". 190820-15:15:47,579 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/resampling_xfm/out.lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190820-15:15:47,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.gen_ref". 190820-15:15:47,603 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190820-15:15:47,604 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-15:15:47,996 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.set_xfm_source". 190820-15:15:48,27 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190820-15:15:48,262 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190820-15:15:48,264 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:15:48,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190820-15:15:48,279 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:15:51,625 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.sampler" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_rh/sampler". 190820-15:15:51,628 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190820-15:15:51,630 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-NDARINVGBXJFCXY --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190820-15:15:51,693 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.sampler" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_lh/sampler". 190820-15:15:51,696 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190820-15:15:51,699 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-NDARINVGBXJFCXY --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190820-15:17:02,933 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.aparc_std_tfm". 190820-15:17:03,116 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.aseg_std_tfm". 190820-15:17:15,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190820-15:17:15,736 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-15:17:15,743 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190820-15:17:15,744 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:18:16,109 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.mask_std_tfm". 190820-15:18:19,871 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-15:18:19,872 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_trans_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-15:18:29,729 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.aparc_std_tfm". 190820-15:18:35,84 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190820-15:18:35,86 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190820-15:18:38,543 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-15:18:44,614 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190820-15:18:44,616 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:18:46,345 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-15:18:52,74 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-15:18:52,76 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-15:19:06,261 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-15:19:09,567 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-15:19:09,569 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-15:19:19,371 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-15:19:22,156 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-15:19:22,158 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-15:19:23,325 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-15:19:25,355 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-15:19:25,357 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-15:19:44,411 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-15:19:48,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-15:19:48,252 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-15:19:48,622 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-15:19:52,382 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-15:19:52,384 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-15:19:54,141 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-15:19:56,57 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-15:19:56,59 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-15:19:56,118 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-15:19:57,417 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.aseg_std_tfm". 190820-15:19:57,603 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-15:19:57,604 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-15:19:58,337 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-15:20:00,315 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-15:20:00,316 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-15:20:01,410 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-15:20:04,263 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190820-15:20:04,265 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-15:20:06,553 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190820-15:20:06,554 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190820-15:20:08,803 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.gen_ref". 190820-15:20:11,684 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190820-15:20:11,686 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:21:03,580 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.mask_std_tfm". 190820-15:21:09,848 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190820-15:21:09,850 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190820-15:21:13,771 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-15:21:14,880 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190820-15:21:14,881 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:21:26,264 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm". 190820-15:21:30,206 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190820-15:21:30,767 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190820-15:21:30,769 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-15:21:31,852 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/merge". 190820-15:21:31,883 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190820-15:21:31,884 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190820-15:21:31,898 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-15:21:33,49 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.gen_ref". 190820-15:21:35,869 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190820-15:21:35,871 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:21:35,879 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190820-15:21:35,880 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190820-15:21:35,889 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190820-15:21:35,890 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190820-15:22:13,919 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm". 190820-15:22:16,807 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm". 190820-15:22:21,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190820-15:22:21,982 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190820-15:22:23,205 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm". 190820-15:22:24,612 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-15:22:26,721 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190820-15:22:26,723 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190820-15:22:29,153 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190820-15:22:31,318 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm". 190820-15:22:31,932 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm". 190820-15:22:33,543 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190820-15:22:33,568 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-15:24:30,723 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.merge". 190820-15:24:33,913 nipype.workflow INFO: [Node] Finished "_sampler0". 190820-15:24:33,964 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.sampler". 190820-15:24:36,501 nipype.workflow INFO: [Node] Finished "_sampler0". 190820-15:24:36,502 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.sampler". 190820-15:26:30,742 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.resampling_xfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/resampling_xfm". 190820-15:26:30,744 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/resampling_xfm/out.lta --src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz 190820-15:26:31,454 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.resampling_xfm". 190820-15:26:32,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190820-15:26:32,471 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-15:26:32,474 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190820-15:26:35,786 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.set_xfm_source" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/set_xfm_source". 190820-15:26:35,788 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/resampling_xfm/out.lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190820-15:26:35,794 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190820-15:26:35,795 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-15:26:36,705 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.set_xfm_source". 190820-15:26:36,883 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190820-15:26:39,436 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.sampler" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_rh/sampler". 190820-15:26:39,439 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190820-15:26:39,442 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-NDARINVGBXJFCXY --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190820-15:26:39,451 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.sampler" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_lh/sampler". 190820-15:26:39,455 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190820-15:26:39,457 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-NDARINVGBXJFCXY --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190820-15:26:41,844 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190820-15:26:41,845 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190820-15:26:41,861 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190820-15:26:41,862 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190820-15:29:01,24 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190820-15:29:01,628 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190820-15:29:03,744 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.update_metadata" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata". 190820-15:29:03,746 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190820-15:29:03,746 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190820-15:29:03,746 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190820-15:29:03,747 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190820-15:29:03,747 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190820-15:29:03,747 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190820-15:29:03,748 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.update_metadata". 190820-15:29:03,783 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-15:29:03,785 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_trans_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-15:29:31,542 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-15:30:07,94 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-15:30:07,96 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-15:30:21,458 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-15:30:24,49 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-15:30:24,51 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-15:30:32,933 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-15:30:36,414 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-15:30:36,415 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-15:30:37,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-15:30:40,617 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-15:30:40,619 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-15:31:00,358 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-15:31:03,571 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-15:31:03,572 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-15:31:03,940 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-15:31:07,822 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-15:31:07,824 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-15:31:09,632 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-15:31:12,108 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-15:31:12,109 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-15:31:12,182 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-15:31:15,574 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-15:31:15,575 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-15:31:15,959 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-15:31:17,551 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-15:31:17,552 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-15:31:18,658 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-15:33:51,699 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190820-15:33:53,438 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/merge". 190820-15:33:53,486 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-15:33:53,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190820-15:33:53,531 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-15:35:20,481 nipype.workflow INFO: [Node] Finished "_sampler0". 190820-15:35:20,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.sampler". 190820-15:35:26,168 nipype.workflow INFO: [Node] Finished "_sampler0". 190820-15:35:26,180 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.sampler". 190820-15:35:33,532 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190820-15:35:33,533 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190820-15:35:33,542 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190820-15:35:33,543 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190820-15:37:13,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.merge". 190820-15:37:46,801 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190820-15:37:49,791 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190820-15:39:20,304 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.resampling_xfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/resampling_xfm". 190820-15:39:20,306 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/resampling_xfm/out.lta --src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz 190820-15:39:21,22 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.resampling_xfm". 190820-15:39:22,85 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190820-15:39:22,86 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-15:39:22,89 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190820-15:39:23,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.update_metadata" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata". 190820-15:39:23,761 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190820-15:39:23,761 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190820-15:39:23,761 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190820-15:39:23,762 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190820-15:39:23,762 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190820-15:39:23,762 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190820-15:39:23,763 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.update_metadata". 190820-15:39:23,780 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.set_xfm_source" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/set_xfm_source". 190820-15:39:23,782 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/resampling_xfm/out.lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190820-15:39:23,789 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190820-15:39:23,790 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-15:39:24,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.set_xfm_source". 190820-15:39:24,784 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190820-15:39:27,736 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.sampler" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_rh/sampler". 190820-15:39:27,739 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190820-15:39:27,741 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-NDARINVGBXJFCXY --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190820-15:39:27,750 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.sampler" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_lh/sampler". 190820-15:39:27,753 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190820-15:39:27,756 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-NDARINVGBXJFCXY --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190820-15:39:38,770 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-15:39:38,772 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_trans_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-15:40:05,991 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-15:40:35,649 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-15:40:35,651 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-15:40:49,869 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-15:40:52,332 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-15:40:52,333 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-15:41:01,508 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-15:41:04,952 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-15:41:04,954 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-15:41:06,214 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-15:41:08,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-15:41:08,395 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-15:41:26,425 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-15:41:29,896 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-15:41:29,898 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-15:41:30,289 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-15:41:33,978 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-15:41:33,980 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-15:41:35,867 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-15:41:38,223 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-15:41:38,225 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-15:41:38,306 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-15:41:42,31 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-15:41:42,33 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-15:41:43,1 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-15:41:46,267 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-15:41:46,268 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-15:41:47,409 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-15:45:16,823 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190820-15:45:19,365 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/merge". 190820-15:45:19,383 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-15:45:19,495 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190820-15:45:19,508 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-15:48:33,208 nipype.workflow INFO: [Node] Finished "_sampler0". 190820-15:48:33,249 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.sampler". 190820-15:48:35,660 nipype.workflow INFO: [Node] Finished "_sampler0". 190820-15:48:35,661 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.sampler". 190820-15:48:44,584 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190820-15:48:44,585 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190820-15:48:44,594 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190820-15:48:44,595 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190820-15:49:17,30 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.merge". 190820-15:51:30,803 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190820-15:51:37,99 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190820-15:52:28,547 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.resampling_xfm" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/resampling_xfm". 190820-15:52:28,549 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/resampling_xfm/out.lta --src /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINVGBXJFCXY_run-01_T1w_corrected_xform.nii.gz 190820-15:52:29,313 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.resampling_xfm". 190820-15:52:30,313 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190820-15:52:30,314 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-15:52:30,317 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190820-15:52:31,820 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.update_metadata" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata". 190820-15:52:31,822 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190820-15:52:31,822 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190820-15:52:31,822 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190820-15:52:31,823 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190820-15:52:31,823 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190820-15:52:31,823 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190820-15:52:31,824 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.update_metadata". 190820-15:52:31,836 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.set_xfm_source" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/set_xfm_source". 190820-15:52:31,838 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/resampling_xfm/out.lta /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190820-15:52:31,843 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190820-15:52:31,844 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-15:52:32,392 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.set_xfm_source". 190820-15:52:32,590 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190820-15:52:36,16 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.sampler" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_rh/sampler". 190820-15:52:36,19 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190820-15:52:36,22 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-NDARINVGBXJFCXY --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190820-15:52:36,30 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.sampler" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_lh/sampler". 190820-15:52:36,33 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190820-15:52:36,36 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-NDARINVGBXJFCXY --reg /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190820-15:52:48,360 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190820-15:52:48,362 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_trans_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-15:53:17,434 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-15:53:48,202 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190820-15:53:48,205 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-15:54:04,881 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-15:54:07,945 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190820-15:54:07,946 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-15:54:18,279 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-15:54:21,463 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190820-15:54:21,464 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-15:54:23,472 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-15:54:25,564 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190820-15:54:25,566 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-15:54:47,561 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-15:54:49,861 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190820-15:54:49,862 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-15:54:50,231 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-15:54:53,601 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190820-15:54:53,603 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190820-15:54:55,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-15:54:58,694 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190820-15:54:58,696 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-15:54:58,843 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-15:55:05,2 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190820-15:55:05,4 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-15:55:05,993 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-15:55:09,387 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190820-15:55:09,389 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190820-15:55:12,610 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-16:02:26,686 nipype.workflow INFO: [Node] Finished "_sampler0". 190820-16:02:26,717 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.sampler". 190820-16:02:28,423 nipype.workflow INFO: [Node] Finished "_sampler0". 190820-16:02:28,424 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.sampler". 190820-16:02:35,400 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190820-16:02:35,401 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190820-16:02:35,410 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190820-16:02:35,411 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190820-16:04:53,490 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190820-16:04:55,179 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190820-16:04:55,997 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.update_metadata" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata". 190820-16:04:55,999 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190820-16:04:56,0 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190820-16:04:56,0 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190820-16:04:56,0 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190820-16:04:56,1 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190820-16:04:56,1 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190820-16:04:56,2 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.update_metadata". 190820-16:09:45,635 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_to_std_transform". 190820-16:09:46,424 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190820-16:09:46,448 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-16:09:46,478 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190820-16:09:46,501 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-16:16:07,170 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.merge". 190820-16:23:04,799 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190820-16:23:04,801 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-16:23:04,871 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.validate". 190820-16:23:08,385 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190820-16:23:08,386 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-16:23:14,838 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190820-16:23:23,629 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190820-16:23:23,631 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-16:24:02,374 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-16:24:05,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.outputnode" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/outputnode". 190820-16:24:05,533 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190820-16:24:05,537 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.outputnode". 190820-16:24:08,829 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190820-16:24:08,831 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-16:24:22,521 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-16:24:24,442 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190820-16:24:24,444 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-16:24:43,107 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-16:24:46,408 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190820-16:24:46,410 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-16:24:47,746 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-16:24:50,432 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190820-16:24:50,434 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-16:25:20,49 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-16:25:22,236 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190820-16:25:22,237 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-16:25:22,722 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-16:25:24,477 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190820-16:25:24,479 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190820-16:25:26,644 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-16:25:28,405 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190820-16:25:28,407 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-16:25:28,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-16:25:30,441 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190820-16:25:30,442 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-16:25:31,375 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-16:25:34,437 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190820-16:25:34,439 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190820-16:25:35,647 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-16:31:01,781 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_to_std_transform". 190820-16:31:03,161 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190820-16:31:03,174 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-16:31:03,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190820-16:31:03,242 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-16:37:12,325 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.merge". 190820-16:43:26,331 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190820-16:43:26,332 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-16:43:26,398 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.validate". 190820-16:43:29,917 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190820-16:43:29,918 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-16:43:38,162 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190820-16:43:44,696 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190820-16:43:44,698 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-16:44:23,429 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-16:44:26,779 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.outputnode" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/outputnode". 190820-16:44:26,780 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190820-16:44:26,783 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.outputnode". 190820-16:44:30,60 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190820-16:44:30,62 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-16:44:43,381 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-16:44:45,652 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190820-16:44:45,653 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-16:45:05,423 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-16:45:07,697 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190820-16:45:07,699 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-16:45:08,998 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-16:45:11,648 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190820-16:45:11,650 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-16:45:41,753 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-16:45:43,637 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190820-16:45:43,638 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-16:45:44,116 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-16:45:47,644 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190820-16:45:47,646 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190820-16:45:49,861 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-16:45:51,454 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190820-16:45:51,456 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-16:45:51,615 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-16:45:53,561 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190820-16:45:53,562 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-16:45:54,486 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-16:45:57,581 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190820-16:45:57,583 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190820-16:45:58,869 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-16:51:23,17 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform". 190820-16:51:24,375 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190820-16:51:24,387 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-16:51:24,442 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190820-16:51:24,455 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190820-16:57:36,816 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.merge". 190820-17:04:20,208 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190820-17:04:20,209 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-17:04:20,275 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate". 190820-17:04:23,809 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190820-17:04:23,811 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-17:04:32,249 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190820-17:04:40,882 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190820-17:04:40,884 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-17:05:18,138 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-17:05:20,959 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.outputnode" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/outputnode". 190820-17:05:20,960 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190820-17:05:20,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.outputnode". 190820-17:05:24,235 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190820-17:05:24,237 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-17:05:36,110 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-17:05:37,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190820-17:05:37,870 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-17:05:58,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-17:06:01,679 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190820-17:06:01,681 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-17:06:02,903 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-17:06:05,827 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190820-17:06:05,829 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-17:06:34,919 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-17:06:37,832 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190820-17:06:37,833 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-17:06:38,341 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-17:06:41,837 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190820-17:06:41,839 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190820-17:06:43,943 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-17:06:45,841 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190820-17:06:45,843 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-17:06:45,983 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-17:06:47,838 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190820-17:06:47,840 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-17:06:48,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-17:06:50,929 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190820-17:06:50,931 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190820-17:06:51,994 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190820-17:12:07,928 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform". 190820-17:12:08,576 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.merge" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190820-17:12:08,589 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190820-17:12:51,343 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.merge". 190820-17:13:37,147 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190820-17:13:37,186 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190820-17:13:37,212 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate". 190820-17:13:39,338 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190820-17:13:39,339 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190820-17:13:40,173 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190820-17:13:43,337 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190820-17:13:43,339 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190820-17:13:47,733 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190820-17:13:49,343 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.outputnode" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/outputnode". 190820-17:13:49,345 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190820-17:13:49,348 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.outputnode". 190820-17:13:49,737 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190820-17:13:49,739 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190820-17:13:51,66 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190820-17:13:51,344 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190820-17:13:51,346 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190820-17:13:53,634 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190820-17:13:55,347 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190820-17:13:55,349 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190820-17:13:55,486 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190820-17:13:57,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190820-17:13:57,351 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190820-17:14:00,748 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190820-17:14:01,352 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190820-17:14:01,353 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190820-17:14:01,415 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190820-17:14:03,353 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190820-17:14:03,355 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190820-17:14:03,588 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190820-17:14:05,356 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190820-17:14:05,357 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190820-17:14:05,381 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190820-17:14:07,358 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190820-17:14:07,360 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190820-17:14:07,475 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190820-17:14:09,359 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190820-17:14:09,361 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7478633.1.gpu.q/fmriprep_wf/single_subject_NDARINVGBXJFCXY_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190820-17:14:09,496 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINVGBXJFCXY_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] Error in atexit._run_exitfuncs: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/concurrent/futures/process.py", line 101, in _python_exit thread_wakeup.wakeup() File "/usr/local/miniconda/lib/python3.7/concurrent/futures/process.py", line 89, in wakeup self._writer.send_bytes(b"") File "/usr/local/miniconda/lib/python3.7/multiprocessing/connection.py", line 183, in send_bytes self._check_closed() File "/usr/local/miniconda/lib/python3.7/multiprocessing/connection.py", line 136, in _check_closed raise OSError("handle is closed") OSError: handle is closed