sub-NDARINV44K29WLN /data/jux/mackey_group/public_data/ABCD/bids_release2_site14site16 This dataset appears to be BIDS compatible. Summary: Available Tasks: Available Modalities: 25538 Files, 455.36GB rest T1w 611 - Subjects TODO: full task name for rest dwi 1 - Session bold events fieldmap If you have any questions, please post on https://neurostars.org/tags/bids. Making sure the input data is BIDS compliant (warnings can be ignored in most cases). 190802-10:40:06,681 nipype.workflow IMPORTANT: Running fMRIPREP version 1.4.1: * BIDS dataset path: /mnt. * Participant list: ['NDARINV44K29WLN']. * Run identifier: 20190802-104000_e3bcf0d1-258a-469b-9779-bf2fdd2a55f4. 190802-10:40:10,294 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-01_bold.nii.gz" (0.16 GB / 383 TRs). Memory resampled/largemem=0.62/1.22 GB. 190802-10:40:10,446 nipype.workflow IMPORTANT: No single-band-reference found for sub-NDARINV44K29WLN_task-rest_run-01_bold.nii.gz 190802-10:40:15,544 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-01_bold.nii.gz). 190802-10:40:16,511 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190802-10:40:19,638 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-02_bold.nii.gz" (0.16 GB / 383 TRs). Memory resampled/largemem=0.62/1.22 GB. 190802-10:40:19,784 nipype.workflow IMPORTANT: No single-band-reference found for sub-NDARINV44K29WLN_task-rest_run-02_bold.nii.gz 190802-10:40:20,588 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-02_bold.nii.gz). 190802-10:40:21,554 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190802-10:40:24,758 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-03_bold.nii.gz" (0.16 GB / 383 TRs). Memory resampled/largemem=0.63/1.23 GB. 190802-10:40:24,904 nipype.workflow IMPORTANT: No single-band-reference found for sub-NDARINV44K29WLN_task-rest_run-03_bold.nii.gz 190802-10:40:25,709 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-03_bold.nii.gz). 190802-10:40:26,677 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190802-10:40:29,838 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-04_bold.nii.gz" (0.16 GB / 383 TRs). Memory resampled/largemem=0.63/1.23 GB. 190802-10:40:29,985 nipype.workflow IMPORTANT: No single-band-reference found for sub-NDARINV44K29WLN_task-rest_run-04_bold.nii.gz 190802-10:40:30,786 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-04_bold.nii.gz). 190802-10:40:31,749 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190802-10:40:37,452 nipype.workflow IMPORTANT: Works derived from this fMRIPrep execution should include the following boilerplate: Results included in this manuscript come from preprocessing performed using *fMRIPrep* 1.4.1 (@fmriprep1; @fmriprep2; RRID:SCR_016216), which is based on *Nipype* 1.2.0 (@nipype1; @nipype2; RRID:SCR_002502). Anatomical data preprocessing : The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU) with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.2.0 [@ants, RRID:SCR_004757], and used as T1w-reference throughout the workflow. The T1w-reference was then skull-stripped with a *Nipype* implementation of the `antsBrainExtraction.sh` workflow (from ANTs), using OASIS30ANTs as target template. Brain tissue segmentation of cerebrospinal fluid (CSF), white-matter (WM) and gray-matter (GM) was performed on the brain-extracted T1w using `fast` [FSL 5.0.9, RRID:SCR_002823, @fsl_fast]. Brain surfaces were reconstructed using `recon-all` [FreeSurfer 6.0.1, RRID:SCR_001847, @fs_reconall], and the brain mask estimated previously was refined with a custom variation of the method to reconcile ANTs-derived and FreeSurfer-derived segmentations of the cortical gray-matter of Mindboggle [RRID:SCR_002438, @mindboggle]. Volume-based spatial normalization to one standard space (MNI152NLin6Asym) was performed through nonlinear registration with `antsRegistration` (ANTs 2.2.0), using brain-extracted versions of both T1w reference and the T1w template. The following template was selected for spatial normalization: *FSL's MNI ICBM 152 non-linear 6th Generation Asymmetric Average Brain Stereotaxic Registration Model* [@mni152nlin6asym, RRID:SCR_002823; TemplateFlow ID: MNI152NLin6Asym]. Functional data preprocessing : For each of the 4 BOLD runs found per subject (across all tasks and sessions), the following preprocessing was performed. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. The BOLD reference was then co-registered to the T1w reference using `bbregister` (FreeSurfer) which implements boundary-based registration [@bbr]. Co-registration was configured with nine degrees of freedom to account for distortions remaining in the BOLD reference. Head-motion parameters with respect to the BOLD reference (transformation matrices, and six corresponding rotation and translation parameters) are estimated before any spatiotemporal filtering using `mcflirt` [FSL 5.0.9, @mcflirt]. The BOLD time-series, were resampled to surfaces on the following spaces: *fsaverage*. The BOLD time-series (including slice-timing correction when applied) were resampled onto their original, native space by applying a single, composite transform to correct for head-motion and susceptibility distortions. These resampled BOLD time-series will be referred to as *preprocessed BOLD in original space*, or just *preprocessed BOLD*. The BOLD time-series were resampled into standard space, generating a *preprocessed BOLD run in ['MNI152NLin6Asym'] space*. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. Several confounding time-series were calculated based on the *preprocessed BOLD*: framewise displacement (FD), DVARS and three region-wise global signals. FD and DVARS are calculated for each functional run, both using their implementations in *Nipype* [following the definitions by @power_fd_dvars]. The three global signals are extracted within the CSF, the WM, and the whole-brain masks. Additionally, a set of physiological regressors were extracted to allow for component-based noise correction [*CompCor*, @compcor]. Principal components are estimated after high-pass filtering the *preprocessed BOLD* time-series (using a discrete cosine filter with 128s cut-off) for the two *CompCor* variants: temporal (tCompCor) and anatomical (aCompCor). tCompCor components are then calculated from the top 5% variable voxels within a mask covering the subcortical regions. This subcortical mask is obtained by heavily eroding the brain mask, which ensures it does not include cortical GM regions. For aCompCor, components are calculated within the intersection of the aforementioned mask and the union of CSF and WM masks calculated in T1w space, after their projection to the native space of each functional run (using the inverse BOLD-to-T1w transformation). Components are also calculated separately within the WM and CSF masks. For each CompCor decomposition, the *k* components with the largest singular values are retained, such that the retained components' time series are sufficient to explain 50 percent of variance across the nuisance mask (CSF, WM, combined, or temporal). The remaining components are dropped from consideration. The head-motion estimates calculated in the correction step were also placed within the corresponding confounds file. The confound time series derived from head motion estimates and global signals were expanded with the inclusion of temporal derivatives and quadratic terms for each [@confounds_satterthwaite_2013]. Frames that exceeded a threshold of 0.5 mm FD or 1.5 standardised DVARS were annotated as motion outliers. All resamplings can be performed with *a single interpolation step* by composing all the pertinent transformations (i.e. head-motion transform matrices, susceptibility distortion correction when available, and co-registrations to anatomical and output spaces). Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs), configured with Lanczos interpolation to minimize the smoothing effects of other kernels [@lanczos]. Non-gridded (surface) resamplings were performed using `mri_vol2surf` (FreeSurfer). Many internal operations of *fMRIPrep* use *Nilearn* 0.5.2 [@nilearn, RRID:SCR_001362], mostly within the functional processing workflow. For more details of the pipeline, see [the section corresponding to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation"). ### References 190802-10:41:17,21 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.func_derivatives_wf.raw_sources" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/func_derivatives_wf/raw_sources". 190802-10:41:17,45 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.func_derivatives_wf.raw_sources" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/func_derivatives_wf/raw_sources". 190802-10:41:17,49 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.func_derivatives_wf.raw_sources" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/func_derivatives_wf/raw_sources". 190802-10:41:17,66 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.func_derivatives_wf.raw_sources" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/func_derivatives_wf/raw_sources". 190802-10:41:17,68 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190802-10:41:17,94 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190802-10:41:17,109 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190802-10:41:17,114 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.func_derivatives_wf.raw_sources". 190802-10:41:17,125 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190802-10:41:17,142 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.func_derivatives_wf.raw_sources". 190802-10:41:17,163 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.func_derivatives_wf.raw_sources". 190802-10:41:17,181 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.func_derivatives_wf.raw_sources". 190802-10:41:27,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/validate". 190802-10:41:27,687 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190802-10:41:27,693 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl". 190802-10:41:27,672 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl". 190802-10:41:27,696 nipype.workflow INFO: [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1 190802-10:41:27,682 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/validate". 190802-10:41:27,701 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190802-10:41:27,685 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/validate". 190802-10:41:27,703 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190802-10:41:27,685 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/validate". 190802-10:41:27,706 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190802-10:41:27,738 nipype.workflow INFO: [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1 190802-10:41:27,844 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.validate". 190802-10:41:27,846 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.validate". 190802-10:41:27,847 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.validate". 190802-10:41:27,850 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.validate". 190802-10:41:28,220 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.bidssrc" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/bidssrc". 190802-10:41:28,231 nipype.workflow INFO: [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber") 190802-10:41:28,233 nipype.interface WARNING: No "t2w" images found for sub- 190802-10:41:28,233 nipype.interface WARNING: No "flair" images found for sub- 190802-10:41:28,233 nipype.interface WARNING: No "sbref" images found for sub- 190802-10:41:28,233 nipype.interface WARNING: No "roi" images found for sub- 190802-10:41:28,243 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.bidssrc". 190802-10:41:32,535 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_split" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_split". 190802-10:41:32,537 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-01_bold.nii.gz -t 190802-10:41:32,995 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_split" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_split". 190802-10:41:33,34 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-04_bold.nii.gz -t 190802-10:41:34,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_split" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_split". 190802-10:41:34,252 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-02_bold.nii.gz -t 190802-10:41:35,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.bids_info" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/bids_info". 190802-10:41:35,404 nipype.workflow INFO: [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo") 190802-10:41:36,228 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_split" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_split". 190802-10:41:36,230 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-03_bold.nii.gz -t 190802-10:41:49,252 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref". 190802-10:41:49,328 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190802-10:41:50,776 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref". 190802-10:41:50,778 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190802-10:41:51,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref". 190802-10:41:51,329 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190802-10:41:51,371 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions". 190802-10:41:51,373 nipype.workflow INFO: [Node] Running "t1_template_dimensions" ("niworkflows.interfaces.images.TemplateDimensions") 190802-10:41:52,358 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions". 190802-10:41:52,721 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref". 190802-10:41:52,828 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190802-10:41:54,763 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl". 190802-10:41:59,422 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources". 190802-10:41:59,423 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190802-10:41:59,427 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources". 190802-10:41:59,431 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_derivatives_wf/t1_name". 190802-10:41:59,433 nipype.workflow INFO: [Node] Running "t1_name" ("nipype.interfaces.utility.wrappers.Function") 190802-10:41:59,436 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.t1_name". 190802-10:41:59,445 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_template_wf.t1_conform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_template_wf/t1_conform". 190802-10:41:59,447 nipype.workflow INFO: [Node] Setting-up "_t1_conform0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0". 190802-10:41:59,449 nipype.workflow INFO: [Node] Running "_t1_conform0" ("niworkflows.interfaces.images.Conform") 190802-10:41:59,688 nipype.workflow INFO: [Node] Finished "_t1_conform0". 190802-10:41:59,737 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_template_wf.t1_conform". 190802-10:42:00,168 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.gen_ref". 190802-10:42:01,318 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.gen_ref". 190802-10:42:01,663 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.gen_ref". 190802-10:42:01,986 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.gen_ref". 190802-10:42:02,601 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.mcflirt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_hmc_wf/mcflirt". 190802-10:42:02,603 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-03_bold.nii.gz -out /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_hmc_wf/mcflirt/sub-NDARINV44K29WLN_task-rest_run-03_bold_mcf.nii.gz -reffile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190802-10:42:03,870 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.mcflirt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_hmc_wf/mcflirt". 190802-10:42:03,872 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-04_bold.nii.gz -out /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_hmc_wf/mcflirt/sub-NDARINV44K29WLN_task-rest_run-04_bold_mcf.nii.gz -reffile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190802-10:42:05,304 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_template_wf.get1st" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_template_wf/get1st". 190802-10:42:05,306 nipype.workflow INFO: [Node] Running "get1st" ("nipype.interfaces.utility.base.Select") 190802-10:42:05,309 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_template_wf.get1st". 190802-10:42:06,760 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.mcflirt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/mcflirt". 190802-10:42:06,762 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-01_bold.nii.gz -out /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/mcflirt/sub-NDARINV44K29WLN_task-rest_run-01_bold_mcf.nii.gz -reffile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190802-10:42:08,350 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.mcflirt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_hmc_wf/mcflirt". 190802-10:42:08,352 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-NDARINV44K29WLN/func/sub-NDARINV44K29WLN_task-rest_run-02_bold.nii.gz -out /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_hmc_wf/mcflirt/sub-NDARINV44K29WLN_task-rest_run-02_bold_mcf.nii.gz -reffile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190802-10:42:13,770 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/fov_check". 190802-10:42:13,772 nipype.workflow INFO: [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function") 190802-10:42:13,860 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/truncate_images". 190802-10:42:13,863 nipype.workflow INFO: [Node] Setting-up "_truncate_images0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0". 190802-10:42:13,865 nipype.workflow INFO: [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_maths.nii.gz TruncateImageIntensity /mnt/sub-NDARINV44K29WLN/anat/sub-NDARINV44K29WLN_run-01_T1w.nii.gz 0.01 0.999 256 190802-10:42:14,736 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/recon_config". 190802-10:42:14,738 nipype.workflow INFO: [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs") 190802-10:42:15,61 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.recon_config". 190802-10:42:17,961 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.bids_info". 190802-10:42:18,419 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.fov_check". 190802-10:43:14,498 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl". 190802-10:43:16,626 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl". 190802-10:43:16,628 nipype.workflow INFO: [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge") 190802-10:43:16,631 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl". 190802-10:43:49,200 nipype.workflow INFO: [Node] Finished "_truncate_images0". 190802-10:43:49,201 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.truncate_images". 190802-10:43:52,490 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190802-10:43:52,494 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190802-10:44:55,706 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190802-10:44:58,558 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190802-10:44:58,562 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190802-10:46:59,833 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190802-10:47:02,771 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190802-10:47:02,774 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190802-10:48:11,472 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190802-10:48:14,760 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190802-10:48:14,778 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190802-10:48:19,184 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_split". 190802-10:48:19,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_split". 190802-10:48:20,107 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190802-10:48:20,570 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_split". 190802-10:48:20,586 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190802-10:48:20,589 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190802-10:48:20,636 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_split". 190802-10:48:25,218 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190802-10:48:25,221 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190802-10:49:10,942 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190802-10:49:12,796 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190802-10:49:12,800 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190802-10:49:23,987 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190802-10:49:26,999 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190802-10:49:27,2 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190802-10:49:27,21 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190802-10:49:28,796 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190802-10:49:28,798 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190802-10:49:28,806 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190802-10:49:28,808 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190802-10:49:46,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190802-10:49:49,331 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190802-10:49:49,334 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190802-10:50:17,945 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190802-10:50:21,373 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190802-10:50:21,375 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190802-10:50:22,221 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190802-10:50:23,658 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190802-10:50:24,878 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190802-10:50:24,882 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190802-10:50:25,185 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190802-10:50:25,210 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190802-10:50:34,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190802-10:50:37,279 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190802-10:50:37,281 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190802-10:50:41,520 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190802-10:50:45,583 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190802-10:50:46,335 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190802-10:50:46,359 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190802-10:50:48,295 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190802-10:50:48,297 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190802-10:50:48,304 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190802-10:50:48,307 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190802-10:50:57,802 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190802-10:51:00,864 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190802-10:51:00,865 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190802-10:51:01,607 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190802-10:51:04,830 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190802-10:51:04,832 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190802-10:51:08,25 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190802-10:51:10,809 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190802-10:51:10,811 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190802-10:51:11,101 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190802-10:51:12,803 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190802-10:51:12,805 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190802-10:51:13,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190802-10:51:16,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190802-10:51:16,813 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190802-10:51:18,297 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190802-10:51:46,194 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190802-10:51:48,287 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190802-10:51:48,291 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190802-10:51:52,618 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190802-10:51:54,724 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190802-10:51:54,726 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190802-10:51:59,172 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190802-10:52:02,444 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190802-10:52:02,479 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190802-10:52:02,481 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190802-10:52:04,297 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4". 190802-10:52:04,301 nipype.workflow INFO: [Node] Setting-up "_inu_n40" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40". 190802-10:52:04,303 nipype.workflow INFO: [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-NDARINV44K29WLN_run-01_T1w_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-NDARINV44K29WLN_run-01_T1w_maths_corrected.nii.gz --shrink-factor 4 190802-10:52:05,936 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190802-10:52:13,269 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190802-10:52:13,272 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190802-10:52:14,754 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190802-10:52:17,664 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190802-10:52:17,666 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190802-10:52:18,51 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190802-10:52:18,117 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190802-10:52:51,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190802-10:52:54,963 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190802-10:52:54,966 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190802-10:52:55,792 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190802-10:52:58,835 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190802-10:52:58,838 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190802-10:53:39,527 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190802-10:53:40,962 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190802-10:53:41,804 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190802-10:53:41,807 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190802-10:53:44,271 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190802-10:53:48,312 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190802-10:53:48,314 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190802-10:53:53,856 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190802-10:53:59,145 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190802-10:53:59,147 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190802-10:53:59,955 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190802-10:54:00,432 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190802-10:54:00,434 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190802-10:54:02,853 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190802-10:54:02,856 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190802-10:54:05,788 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190802-10:54:06,943 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190802-10:54:08,447 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190802-10:54:08,449 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190802-10:54:24,170 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190802-10:54:24,230 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190802-10:54:25,10 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190802-10:54:27,99 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190802-10:54:27,102 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190802-10:54:27,624 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190802-10:54:30,991 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190802-10:54:30,993 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190802-10:54:32,962 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190802-10:54:41,575 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190802-10:54:43,300 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190802-10:54:43,302 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190802-10:54:44,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190802-10:54:47,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190802-10:54:47,671 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190802-10:55:16,803 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190802-10:55:19,911 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190802-10:55:19,913 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190802-10:55:25,714 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190802-10:55:27,599 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190802-10:55:27,601 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190802-10:55:28,58 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190802-10:55:30,176 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190802-10:55:30,178 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190802-10:55:32,958 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190802-10:55:35,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190802-10:55:35,521 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190802-10:55:35,858 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190802-10:55:37,753 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190802-10:55:37,755 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190802-10:55:38,684 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190802-10:55:41,550 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190802-10:55:41,553 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190802-10:55:42,706 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190802-10:55:42,958 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190802-10:55:45,572 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190802-10:55:45,574 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190802-10:56:13,625 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190802-10:56:16,17 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190802-10:56:16,19 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190802-10:56:17,187 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190802-10:56:19,636 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190802-10:56:19,638 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190802-10:56:54,823 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190802-10:56:57,976 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190802-10:56:57,978 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190802-10:56:58,420 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190802-10:57:01,472 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190802-10:57:01,475 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190802-10:57:04,646 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190802-10:57:07,570 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190802-10:57:07,571 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190802-10:57:07,716 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190802-10:57:10,38 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190802-10:57:10,40 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190802-10:57:10,782 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190802-10:57:13,571 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190802-10:57:13,573 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190802-10:57:15,63 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190802-11:03:34,409 nipype.workflow INFO: [Node] Finished "_inu_n40". 190802-11:03:34,423 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.inu_n4". 190802-11:03:35,738 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/lap_target". 190802-11:03:35,740 nipype.workflow INFO: [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_maths.nii.gz Laplacian /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected.nii.gz 1.5 1 190802-11:03:35,814 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon1". 190802-11:03:35,817 nipype.workflow INFO: [Node] Running "autorecon1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon1 -i /mnt/sub-NDARINV44K29WLN/anat/sub-NDARINV44K29WLN_run-01_T1w.nii.gz -noskullstrip -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-11:03:44,787 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/res_target". 190802-11:03:44,810 nipype.workflow INFO: [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected.nii.gz sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_resampled.nii.gz 4 4 4 1 190802-11:03:58,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.res_target". 190802-11:04:08,400 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.mcflirt". 190802-11:04:09,924 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.normalize_motion" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_hmc_wf/normalize_motion". 190802-11:04:09,925 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190802-11:04:09,964 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.normalize_motion". 190802-11:04:12,929 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.mcflirt". 190802-11:04:12,987 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.fdisp" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/fdisp". 190802-11:04:12,989 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190802-11:04:13,19 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.fdisp". 190802-11:04:13,856 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.normalize_motion" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_hmc_wf/normalize_motion". 190802-11:04:13,857 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190802-11:04:13,891 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.normalize_motion". 190802-11:04:16,642 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.fdisp" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/fdisp". 190802-11:04:16,645 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190802-11:04:16,673 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.fdisp". 190802-11:04:28,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.mcflirt". 190802-11:04:29,609 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.normalize_motion" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/normalize_motion". 190802-11:04:29,611 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190802-11:04:29,640 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.normalize_motion". 190802-11:04:32,293 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.fdisp" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/fdisp". 190802-11:04:32,294 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190802-11:04:32,308 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.fdisp". 190802-11:04:32,643 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.lap_target". 190802-11:04:32,886 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.mcflirt". 190802-11:04:33,343 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.fsl2itk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/fsl2itk". 190802-11:04:33,366 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190802-11:06:01,115 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.fsl2itk". 190802-11:06:03,602 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.normalize_motion" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_hmc_wf/normalize_motion". 190802-11:06:03,603 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190802-11:06:03,623 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/mrg_target". 190802-11:06:03,625 nipype.workflow INFO: [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge") 190802-11:06:03,628 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.mrg_target". 190802-11:06:03,632 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.normalize_motion". 190802-11:06:05,371 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_transform". 190802-11:06:05,399 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190802-11:33:52,28 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_transform". 190802-11:33:53,423 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/merge". 190802-11:33:53,482 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190802-11:33:53,644 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.fdisp" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/fdisp". 190802-11:33:53,646 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190802-11:33:53,669 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.fdisp". 190802-11:36:11,439 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.merge". 190802-11:36:13,203 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190802-11:36:13,205 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190802-11:36:13,247 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190802-11:36:15,197 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190802-11:36:15,199 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190802-11:36:17,560 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190802-11:36:19,200 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190802-11:36:19,203 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190802-11:36:44,769 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190802-11:36:46,347 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190802-11:36:46,351 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190802-11:36:59,375 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190802-11:37:01,240 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190802-11:37:01,242 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190802-11:37:16,185 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190802-11:37:17,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190802-11:37:17,249 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190802-11:37:18,198 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190802-11:37:19,904 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.fsl2itk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_hmc_wf/fsl2itk". 190802-11:37:19,938 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190802-11:38:49,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_hmc_wf.fsl2itk". 190802-11:38:52,443 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190802-11:38:52,445 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190802-11:39:00,753 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon1". 190802-11:39:02,536 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_transform". 190802-11:39:02,570 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190802-11:39:02,804 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm". 190802-11:39:02,820 nipype.workflow INFO: [Node] Running "fsnative_2_t1_xfm" ("niworkflows.interfaces.freesurfer.PatchedRobustRegister"), a CommandLine Interface with command: mri_robust_register --satit --iscale --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --mov /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/T1.mgz --dst /mnt/sub-NDARINV44K29WLN/anat/sub-NDARINV44K29WLN_run-01_T1w.nii.gz 190802-11:39:26,605 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190802-11:39:29,733 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190802-11:39:29,735 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190802-11:39:50,977 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190802-11:39:53,730 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190802-11:39:53,732 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190802-11:40:23,561 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190802-11:40:25,114 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190802-11:40:25,116 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190802-11:40:25,621 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190802-11:40:27,580 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190802-11:40:27,582 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190802-11:41:04,488 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190802-11:41:06,678 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190802-11:41:06,680 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190802-11:41:06,977 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190802-11:41:09,557 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190802-11:41:09,559 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190802-11:41:12,572 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190802-11:41:15,781 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190802-11:41:15,783 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190802-11:41:16,38 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190802-11:41:17,777 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190802-11:41:17,779 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190802-11:41:18,847 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190802-11:41:21,771 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.dvars" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/dvars". 190802-11:41:21,773 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190802-11:41:21,783 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190802-11:41:21,785 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190802-11:41:23,289 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190802-11:51:07,213 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.dvars". 190802-11:51:11,577 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm". 190802-11:51:15,44 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.fsl2itk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_hmc_wf/fsl2itk". 190802-11:51:15,141 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190802-11:55:25,274 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_hmc_wf.fsl2itk". 190802-11:55:28,730 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.fsl2itk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_hmc_wf/fsl2itk". 190802-11:55:28,802 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190802-11:59:28,487 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_hmc_wf.fsl2itk". 190802-11:59:30,557 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_transform". 190802-11:59:30,640 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190802-12:18:23,149 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_transform". 190802-12:18:27,570 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/merge". 190802-12:18:27,727 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190802-12:18:28,990 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm". 190802-12:18:29,33 nipype.workflow INFO: [Node] Running "t1_2_fsnative_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --invert --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta 190802-12:18:30,70 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm". 190802-12:18:32,543 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk". 190802-12:18:32,591 nipype.workflow INFO: [Node] Running "lta_2_itk" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta --outitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk/out.txt 190802-12:18:33,552 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk". 190802-12:26:47,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.merge". 190802-12:26:49,32 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190802-12:26:49,33 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190802-12:26:49,194 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190802-12:26:51,29 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190802-12:26:51,30 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190802-12:27:01,936 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190802-12:27:05,72 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190802-12:27:05,75 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190802-12:28:04,836 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190802-12:28:06,934 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190802-12:28:06,938 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190802-12:30:03,3 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190802-12:30:05,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190802-12:30:05,253 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190802-12:31:05,542 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190802-12:31:08,400 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190802-12:31:08,403 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190802-12:31:12,970 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190802-12:31:18,605 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_transform". 190802-12:31:18,725 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190802-12:40:26,769 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_transform". 190802-12:40:28,613 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190802-12:40:28,615 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190802-12:40:28,976 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/merge". 190802-12:40:29,138 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190802-12:41:38,337 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190802-12:41:40,782 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190802-12:41:40,784 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190802-12:42:01,651 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190802-12:42:04,782 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190802-12:42:04,785 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190802-12:42:31,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190802-12:42:34,792 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190802-12:42:34,795 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190802-12:42:36,165 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190802-12:42:38,790 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190802-12:42:38,793 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190802-12:43:13,839 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190802-12:43:16,762 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190802-12:43:16,763 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190802-12:43:17,490 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190802-12:43:20,804 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190802-12:43:20,806 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190802-12:43:23,770 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190802-12:43:26,777 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190802-12:43:26,778 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190802-12:43:31,622 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190802-12:43:34,776 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190802-12:43:34,779 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190802-12:43:35,923 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190802-12:43:38,799 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.dvars" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/dvars". 190802-12:43:38,801 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190802-12:43:38,805 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190802-12:43:38,807 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190802-12:43:43,156 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190802-12:50:18,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.merge". 190802-12:50:20,978 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190802-12:50:20,979 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190802-12:50:21,140 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190802-12:50:22,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190802-12:50:22,983 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190802-12:50:35,53 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190802-12:53:34,706 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.dvars". 190802-12:53:41,172 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190802-12:53:41,174 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190802-12:54:40,712 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190802-12:54:42,671 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190802-12:54:42,675 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190802-12:54:56,169 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190802-12:54:58,695 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190802-12:54:58,697 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190802-12:56:01,32 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190802-12:56:02,652 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190802-12:56:02,678 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190802-12:56:07,39 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190802-12:56:10,633 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/init_aff". 190802-12:56:10,639 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1 190802-12:56:58,348 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.init_aff". 190802-12:57:00,97 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190802-12:57:00,99 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190802-12:58:00,115 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190802-12:58:02,154 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190802-12:58:02,157 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190802-12:58:23,72 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190802-12:58:26,171 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190802-12:58:26,173 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190802-12:58:50,341 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190802-12:58:52,122 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190802-12:58:52,124 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190802-12:58:53,440 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190802-12:58:56,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190802-12:58:56,136 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190802-12:59:26,971 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190802-12:59:30,114 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190802-12:59:30,116 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190802-12:59:30,783 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190802-12:59:34,149 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190802-12:59:34,152 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190802-12:59:36,714 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190802-12:59:38,140 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190802-12:59:38,142 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190802-12:59:38,382 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190802-12:59:40,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190802-12:59:40,150 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190802-12:59:41,157 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190802-12:59:43,106 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.dvars" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/dvars". 190802-12:59:43,108 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190802-12:59:43,118 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190802-12:59:43,121 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190802-12:59:44,86 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190802-13:05:53,846 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_transform". 190802-13:05:55,222 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/norm". 190802-13:05:55,227 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform Affine[ 0.1 ] --metric MI[ /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0 190802-13:05:55,516 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/merge". 190802-13:05:55,573 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190802-13:06:39,909 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.dvars". 190802-13:08:00,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.merge". 190802-13:08:01,568 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190802-13:08:01,570 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190802-13:08:01,710 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190802-13:08:03,995 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190802-13:08:03,997 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190802-13:08:10,118 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190802-13:08:11,649 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190802-13:08:11,651 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190802-13:08:48,413 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190802-13:08:49,510 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190802-13:08:49,514 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190802-13:09:09,65 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190802-13:09:11,494 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190802-13:09:11,496 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190802-13:09:39,803 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190802-13:09:41,516 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190802-13:09:41,519 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190802-13:09:43,269 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190802-13:09:47,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190802-13:09:47,495 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190802-13:10:14,409 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190802-13:10:15,495 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190802-13:10:15,497 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190802-13:10:22,357 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190802-13:10:23,532 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190802-13:10:23,534 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190802-13:10:35,254 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190802-13:10:38,97 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190802-13:10:38,100 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190802-13:10:39,177 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190802-13:10:42,143 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190802-13:10:42,146 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190802-13:11:08,687 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190802-13:11:10,117 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190802-13:11:10,119 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190802-13:11:10,588 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190802-13:11:12,116 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190802-13:11:12,118 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190802-13:11:14,483 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190802-13:11:16,129 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190802-13:11:16,131 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190802-13:11:16,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190802-13:11:18,115 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190802-13:11:18,117 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190802-13:11:18,985 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190802-13:11:20,127 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.dvars" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/dvars". 190802-13:11:20,129 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190802-13:11:20,160 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190802-13:11:20,162 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190802-13:11:21,320 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190802-13:21:49,202 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.dvars". 190802-14:53:02,645 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.norm". 190802-14:53:03,946 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask". 190802-14:53:03,950 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/CBLuser/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz --interpolation Gaussian --output tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz --reference-image /mnt/sub-NDARINV44K29WLN/anat/sub-NDARINV44K29WLN_run-01_T1w.nii.gz --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ] 190802-14:53:54,752 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask". 190802-14:53:55,860 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask". 190802-14:53:55,863 nipype.workflow INFO: [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command: ThresholdImage 3 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000 190802-14:53:56,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask". 190802-14:53:57,862 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask". 190802-14:53:57,864 nipype.workflow INFO: [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz PadImage /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 10 190802-14:53:57,872 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask". 190802-14:53:57,874 nipype.workflow INFO: [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz MD /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 2 190802-14:53:59,902 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask". 190802-14:54:00,695 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask". 190802-14:54:01,866 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask". 190802-14:54:01,869 nipype.workflow INFO: [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz GetLargestComponent /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 190802-14:54:03,241 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask". 190802-14:54:03,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos". 190802-14:54:03,871 nipype.workflow INFO: [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command: Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled.nii.gz] --use-random-seed 1 190802-14:55:22,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos". 190802-14:55:23,914 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm". 190802-14:55:23,916 nipype.workflow INFO: [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths.nii.gz PadImage /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled.nii.gz 10 190802-14:55:25,20 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm". 190802-14:55:25,909 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels". 190802-14:55:25,911 nipype.workflow INFO: [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function") 190802-14:55:26,286 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels". 190802-14:55:27,911 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf". 190802-14:55:27,914 nipype.workflow INFO: [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-01.nii.gz -10 190802-14:55:27,920 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf". 190802-14:55:27,922 nipype.workflow INFO: [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-01.nii.gz 10 190802-14:55:27,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm". 190802-14:55:27,937 nipype.workflow INFO: [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-02.nii.gz 190802-14:55:27,941 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm". 190802-14:55:27,943 nipype.workflow INFO: [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-03.nii.gz 190802-14:55:31,315 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf". 190802-14:55:34,73 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm". 190802-14:55:35,85 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm". 190802-14:55:36,82 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm". 190802-14:55:36,84 nipype.workflow INFO: [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz 2 190802-14:55:36,91 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm". 190802-14:55:36,93 nipype.workflow INFO: [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz 190802-14:55:39,432 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm". 190802-14:55:40,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm". 190802-14:55:40,232 nipype.workflow INFO: [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10 190802-14:55:43,351 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm". 190802-14:55:45,911 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf". 190802-14:55:53,70 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm". 190802-14:55:53,929 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm". 190802-14:55:53,930 nipype.workflow INFO: [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz 190802-14:55:55,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm". 190802-14:55:55,931 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm". 190802-14:55:55,933 nipype.workflow INFO: [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 08_mult_gm_maths.nii.gz addtozero /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-NDARINV44K29WLN_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz 190802-14:56:00,493 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm". 190802-14:56:01,934 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm". 190802-14:56:01,936 nipype.workflow INFO: [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz 190802-14:56:02,995 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm". 190802-14:56:03,937 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm". 190802-14:56:03,939 nipype.workflow INFO: [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10 190802-14:56:03,946 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm". 190802-14:56:03,948 nipype.workflow INFO: [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz 190802-14:56:06,244 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm". 190802-14:56:08,101 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms". 190802-14:56:08,103 nipype.workflow INFO: [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge") 190802-14:56:08,107 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms". 190802-14:56:09,577 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm". 190802-14:56:09,948 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm". 190802-14:56:09,950 nipype.workflow INFO: [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10 190802-14:56:09,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2". 190802-14:56:09,959 nipype.workflow INFO: [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function") 190802-14:56:10,554 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2". 190802-14:56:11,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm". 190802-14:56:11,951 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7". 190802-14:56:11,953 nipype.workflow INFO: [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz 190802-14:56:16,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7". 190802-14:56:17,947 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7". 190802-14:56:17,949 nipype.workflow INFO: [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2 190802-14:56:22,9 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7". 190802-14:56:23,951 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7". 190802-14:56:23,953 nipype.workflow INFO: [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz 190802-14:56:25,763 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7". 190802-14:56:25,954 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7". 190802-14:56:25,956 nipype.workflow INFO: [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4 190802-14:56:28,350 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7". 190802-14:56:29,955 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7". 190802-14:56:29,958 nipype.workflow INFO: [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2 190802-14:56:40,287 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7". 190802-14:56:41,963 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2". 190802-14:56:41,965 nipype.workflow INFO: [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 190802-14:56:46,356 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2". 190802-14:56:47,966 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2". 190802-14:56:47,968 nipype.workflow INFO: [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5 190802-14:56:50,292 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2". 190802-14:56:51,970 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2". 190802-14:56:51,972 nipype.workflow INFO: [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5 190802-14:56:56,200 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2". 190802-14:56:57,979 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask". 190802-14:56:57,981 nipype.workflow INFO: [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10 190802-14:56:58,937 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask". 190802-14:56:59,976 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform". 190802-14:56:59,977 nipype.workflow INFO: [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function") 190802-14:57:00,215 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform". 190802-14:57:05,982 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final". 190802-14:57:05,986 nipype.workflow INFO: [Node] Setting-up "_inu_n4_final0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0". 190802-14:57:05,988 nipype.workflow INFO: [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /mnt/sub-NDARINV44K29WLN/anat/sub-NDARINV44K29WLN_run-01_T1w.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-NDARINV44K29WLN_run-01_T1w_corrected.nii.gz, sub-NDARINV44K29WLN_run-01_T1w_bias.nii.gz ] --shrink-factor 4 --weight-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz 190802-14:58:42,718 nipype.workflow INFO: [Node] Finished "_inu_n4_final0". 190802-14:58:42,720 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final". 190802-14:58:44,119 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/apply_mask". 190802-14:58:44,122 nipype.workflow INFO: [Node] Setting-up "_apply_mask0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0". 190802-14:58:44,125 nipype.workflow INFO: [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-NDARINV44K29WLN_run-01_T1w_corrected.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-NDARINV44K29WLN_run-01_T1w_corrected_masked.nii.gz 190802-14:58:45,840 nipype.workflow INFO: [Node] Finished "_apply_mask0". 190802-14:58:45,841 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.brain_extraction_wf.apply_mask". 190802-14:58:52,635 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/trunc_mov". 190802-14:58:52,637 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz 0.01 0.999 256 190802-14:59:01,630 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190802-14:59:03,380 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern". 190802-14:59:03,382 nipype.workflow INFO: [Node] Running "skull_strip_extern" ("niworkflows.interfaces.freesurfer.FSInjectBrainExtracted") 190802-14:59:06,510 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern". 190802-14:59:07,410 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol". 190802-14:59:07,461 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-14:59:07,461 nipype.workflow INFO: [Node] Running "autorecon2_vol" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon2-volonly -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-14:59:07,463 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-18:57:46,475 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol". 190802-18:57:49,212 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190802-18:57:49,218 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-18:57:49,218 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-18:57:49,220 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-18:57:49,223 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190802-18:57:49,228 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-18:57:49,229 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190802-18:57:49,231 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer 190803-01:47:04,421 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190803-01:56:26,351 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190803-01:56:26,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs". 190803-01:56:26,987 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190803-01:56:27,12 nipype.interface INFO: recon-all complete : Not running 190803-01:56:27,12 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190803-01:56:27,14 nipype.interface INFO: recon-all complete : Not running 190803-01:56:27,101 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190803-01:56:27,105 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190803-01:56:27,111 nipype.interface INFO: recon-all complete : Not running 190803-01:56:27,111 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190803-01:56:27,113 nipype.interface INFO: recon-all complete : Not running 190803-01:56:27,241 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190803-01:56:27,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs". 190803-01:56:30,944 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190803-01:56:30,950 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190803-01:56:30,954 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190803-01:56:30,954 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190803-01:56:30,956 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190803-01:56:30,962 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190803-01:56:30,962 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190803-01:56:30,964 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-NDARINV44K29WLN -sd /mnt/derivatives/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190803-03:36:34,717 nipype.workflow INFO: [Node] Finished "_autorecon31". 190803-03:37:00,311 nipype.workflow INFO: [Node] Finished "_autorecon30". 190803-03:37:01,312 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3". 190803-03:37:01,317 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190803-03:37:01,324 nipype.interface INFO: recon-all complete : Not running 190803-03:37:01,324 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190803-03:37:01,326 nipype.interface INFO: recon-all complete : Not running 190803-03:37:01,428 nipype.workflow INFO: [Node] Finished "_autorecon30". 190803-03:37:01,431 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190803-03:37:01,435 nipype.interface INFO: recon-all complete : Not running 190803-03:37:01,435 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190803-03:37:01,437 nipype.interface INFO: recon-all complete : Not running 190803-03:37:01,524 nipype.workflow INFO: [Node] Finished "_autorecon31". 190803-03:37:01,529 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3". 190803-03:37:03,320 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.targets" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/targets". 190803-03:37:03,323 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/targets/mapflow/_targets0". 190803-03:37:03,325 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190803-03:37:03,328 nipype.workflow INFO: [Node] Finished "_targets0". 190803-03:37:03,330 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.targets". 190803-03:37:03,359 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.targets" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/targets". 190803-03:37:03,362 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/targets/mapflow/_targets0". 190803-03:37:03,364 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190803-03:37:03,369 nipype.workflow INFO: [Node] Finished "_targets0". 190803-03:37:03,380 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.targets". 190803-03:37:03,389 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.targets" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/targets". 190803-03:37:03,392 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/targets/mapflow/_targets0". 190803-03:37:03,394 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190803-03:37:03,397 nipype.workflow INFO: [Node] Finished "_targets0". 190803-03:37:03,398 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.targets". 190803-03:37:03,403 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.targets" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/targets". 190803-03:37:03,406 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/targets/mapflow/_targets0". 190803-03:37:03,407 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190803-03:37:03,410 nipype.workflow INFO: [Node] Finished "_targets0". 190803-03:37:03,411 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.targets". 190803-03:37:03,417 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/fs_datasource". 190803-03:37:03,418 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190803-03:37:03,422 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/fs_datasource". 190803-03:37:03,424 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190803-03:37:03,430 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/get_surfaces". 190803-03:37:03,431 nipype.workflow INFO: [Node] Running "get_surfaces" ("nipype.interfaces.io.FreeSurferSource") 190803-03:37:03,437 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/recon_report". 190803-03:37:03,440 nipype.interface INFO: recon-all complete : Not running 190803-03:37:03,441 nipype.workflow INFO: [Node] Running "recon_report" ("niworkflows.interfaces.segmentation.ReconAllRPT"), a CommandLine Interface with command: echo recon-all: nothing to do 190803-03:37:03,443 nipype.interface INFO: recon-all complete : Not running 190803-03:37:03,497 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource". 190803-03:37:03,516 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource". 190803-03:37:03,517 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces". 190803-03:37:03,845 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190803-03:37:03,848 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-NDARINV44K29WLN --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer 190803-03:37:05,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative". 190803-03:37:05,939 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/aseg.mgz --seg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg.mgz --temp /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/rawavg.mgz --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz 190803-03:37:05,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative". 190803-03:37:05,952 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/aseg.mgz --seg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg.mgz --temp /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/rawavg.mgz --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz 190803-03:37:08,345 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190803-03:37:08,369 nipype.workflow INFO: [Node] Running "_midthickness0" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.pial -thickness -thickness_name /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.thickness /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.smoothwm 0.5 midthickness 190803-03:37:08,378 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190803-03:37:08,401 nipype.workflow INFO: [Node] Running "_midthickness1" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.pial -thickness -thickness_name /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.thickness /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.smoothwm 0.5 midthickness 190803-03:37:52,632 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative". 190803-03:37:52,648 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative". 190803-03:37:53,969 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii". 190803-03:37:53,973 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz --input_volume /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz --output_volume /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz 190803-03:37:53,976 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii". 190803-03:37:53,979 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz --input_volume /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz --output_volume /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz 190803-03:38:00,770 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report". 190803-03:38:01,897 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii". 190803-03:38:01,935 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii". 190803-03:38:23,963 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.refine" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/refine". 190803-03:38:23,973 nipype.workflow INFO: [Node] Running "refine" ("niworkflows.interfaces.freesurfer.RefineBrainMask") 190803-03:39:52,619 nipype.interface INFO: stdout 2019-08-03T03:39:52.619000: 190803-03:39:52,619 nipype.interface INFO: stdout 2019-08-03T03:39:52.619000:Matrix from LTA: 190803-03:39:52,619 nipype.interface INFO: stdout 2019-08-03T03:39:52.619000: 0.99815 0.02851 -0.05375 -2.55774; 190803-03:39:52,619 nipype.interface INFO: stdout 2019-08-03T03:39:52.619000: 0.05495 -0.04316 0.99756 11.41344; 190803-03:39:52,619 nipype.interface INFO: stdout 2019-08-03T03:39:52.619000: 0.02612 -0.99866 -0.04465 -1.27090; 190803-03:39:52,619 nipype.interface INFO: stdout 2019-08-03T03:39:52.619000: 0.00000 0.00000 0.00000 1.00000; 190803-03:39:53,313 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806: 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:movvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:targvol /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:outvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:regfile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:invert 0 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:tal 0 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:talres 2 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:regheader 0 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:noresample 0 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:interp nearest (0) 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:precision float (3) 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:Gdiag_no -1 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:Synth 0 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:SynthSeed 1565753382 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806: 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806:Final tkRAS-to-tkRAS Matrix is: 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806: 0.99815 0.02851 -0.05375 -2.55774; 190803-03:39:53,314 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806: 0.05495 -0.04316 0.99756 11.41345; 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806: 0.02612 -0.99866 -0.04465 -1.27091; 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.313806: 0.00000 0.00000 0.00000 1.00000; 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.315174: 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.315174: 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.315174:Vox2Vox Matrix is: 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.315174: 0.41589 -0.02240 -0.01188 -2.78185; 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.315174: 0.01088 -0.01860 0.41611 -6.74403; 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.315174:-0.02290 -0.41565 -0.01798 93.19121; 190803-03:39:53,315 nipype.interface INFO: stdout 2019-08-03T03:39:53.315174: 0.00000 0.00000 0.00000 1.00000; 190803-03:39:57,600 nipype.interface INFO: stdout 2019-08-03T03:39:57.600136: 190803-03:39:57,600 nipype.interface INFO: stdout 2019-08-03T03:39:57.600136:Resampling 190803-03:39:57,600 nipype.interface INFO: stdout 2019-08-03T03:39:57.600136:Output registration matrix is identity 190803-03:39:57,600 nipype.interface INFO: stdout 2019-08-03T03:39:57.600136: 190803-03:39:57,600 nipype.interface INFO: stdout 2019-08-03T03:39:57.600136:mri_vol2vol done 190803-03:41:17,167 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190803-03:41:18,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190803-03:41:18,357 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-NDARINV44K29WLN --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer 190803-03:41:18,640 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister". 190803-03:41:18,663 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.dat --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-NDARINV44K29WLN 190803-03:44:28,157 nipype.interface INFO: stdout 2019-08-03T03:44:28.157105: 190803-03:44:28,157 nipype.interface INFO: stdout 2019-08-03T03:44:28.157105:Matrix from LTA: 190803-03:44:28,157 nipype.interface INFO: stdout 2019-08-03T03:44:28.157105: 0.99823 0.02982 -0.05142 -2.55558; 190803-03:44:28,158 nipype.interface INFO: stdout 2019-08-03T03:44:28.157105: 0.05205 -0.02087 0.99843 11.83362; 190803-03:44:28,158 nipype.interface INFO: stdout 2019-08-03T03:44:28.157105: 0.02870 -0.99934 -0.02239 -0.96703; 190803-03:44:28,158 nipype.interface INFO: stdout 2019-08-03T03:44:28.157105: 0.00000 0.00000 0.00000 1.00000; 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313: 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:movvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:targvol /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:outvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:regfile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:invert 0 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:tal 0 190803-03:44:29,131 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:talres 2 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:regheader 0 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:noresample 0 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:interp nearest (0) 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:precision float (3) 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:Gdiag_no -1 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:Synth 0 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:SynthSeed 1565435309 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313: 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313:Final tkRAS-to-tkRAS Matrix is: 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313: 0.99823 0.02982 -0.05142 -2.55556; 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313: 0.05205 -0.02087 0.99843 11.83362; 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313: 0.02870 -0.99934 -0.02239 -0.96703; 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.131313: 0.00000 0.00000 0.00000 1.00000; 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.132743: 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.132743: 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.132743:Vox2Vox Matrix is: 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.132743: 0.41593 -0.02142 -0.01242 -2.84144; 190803-03:44:29,132 nipype.interface INFO: stdout 2019-08-03T03:44:29.132743: 0.01196 -0.00933 0.41639 -8.23170; 190803-03:44:29,133 nipype.interface INFO: stdout 2019-08-03T03:44:29.132743:-0.02169 -0.41601 -0.00870 92.06942; 190803-03:44:29,133 nipype.interface INFO: stdout 2019-08-03T03:44:29.132743: 0.00000 0.00000 0.00000 1.00000; 190803-03:44:35,69 nipype.interface INFO: stdout 2019-08-03T03:44:35.069787: 190803-03:44:35,70 nipype.interface INFO: stdout 2019-08-03T03:44:35.069787:Resampling 190803-03:44:35,70 nipype.interface INFO: stdout 2019-08-03T03:44:35.069787:Output registration matrix is identity 190803-03:44:35,70 nipype.interface INFO: stdout 2019-08-03T03:44:35.069787: 190803-03:44:35,70 nipype.interface INFO: stdout 2019-08-03T03:44:35.069787:mri_vol2vol done 190803-03:45:25,349 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.refine". 190803-03:45:30,119 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.applyrefined" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined". 190803-03:45:30,121 nipype.workflow INFO: [Node] Running "applyrefined" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/refine/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz 190803-03:45:39,363 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.applyrefined". 190803-03:45:40,878 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/gen_ref". 190803-03:45:40,879 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190803-03:45:40,889 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/gen_ref". 190803-03:45:40,891 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190803-03:45:40,945 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref". 190803-03:45:40,947 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190803-03:45:40,992 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref". 190803-03:45:40,994 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190803-03:45:40,997 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.t1_seg" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/t1_seg". 190803-03:45:41,0 nipype.workflow INFO: [Node] Running "t1_seg" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command: fast -N -p -g -S 1 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/t1_seg/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz 190803-03:45:46,959 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.gen_ref". 190803-03:45:47,16 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.gen_ref". 190803-03:45:47,40 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.gen_ref". 190803-03:45:47,96 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.gen_ref". 190803-03:45:49,81 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190803-03:45:49,83 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190803-03:45:49,90 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190803-03:45:49,92 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190803-03:45:49,102 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190803-03:45:49,104 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190803-03:45:49,111 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190803-03:45:49,113 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190803-03:46:30,533 nipype.interface INFO: stdout 2019-08-03T03:46:30.532908: 190803-03:46:30,533 nipype.interface INFO: stdout 2019-08-03T03:46:30.532908:Matrix from LTA: 190803-03:46:30,533 nipype.interface INFO: stdout 2019-08-03T03:46:30.532908: 0.99813 0.03161 -0.05230 -2.33744; 190803-03:46:30,533 nipype.interface INFO: stdout 2019-08-03T03:46:30.532908: 0.05361 -0.04212 0.99767 10.67738; 190803-03:46:30,533 nipype.interface INFO: stdout 2019-08-03T03:46:30.532908: 0.02934 -0.99861 -0.04374 -1.38749; 190803-03:46:30,533 nipype.interface INFO: stdout 2019-08-03T03:46:30.532908: 0.00000 0.00000 0.00000 1.00000; 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195: 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:movvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:targvol /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:outvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:regfile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:invert 0 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:tal 0 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:talres 2 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:regheader 0 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:noresample 0 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:interp nearest (0) 190803-03:46:32,96 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:precision float (3) 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:Gdiag_no -1 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:Synth 0 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:SynthSeed 1565072394 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195: 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195:Final tkRAS-to-tkRAS Matrix is: 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195: 0.99813 0.03161 -0.05230 -2.33745; 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195: 0.05361 -0.04212 0.99767 10.67738; 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195: 0.02934 -0.99861 -0.04374 -1.38750; 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.096195: 0.00000 0.00000 0.00000 1.00000; 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.097533: 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.097533: 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.097533:Vox2Vox Matrix is: 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.097533: 0.41589 -0.02179 -0.01317 -2.78422; 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.097533: 0.01222 -0.01822 0.41609 -6.91317; 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.097533:-0.02234 -0.41570 -0.01755 92.76394; 190803-03:46:32,97 nipype.interface INFO: stdout 2019-08-03T03:46:32.097533: 0.00000 0.00000 0.00000 1.00000; 190803-03:46:37,626 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190803-03:46:37,891 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190803-03:46:38,419 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190803-03:46:38,723 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190803-03:46:40,495 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190803-03:46:40,591 nipype.interface INFO: stdout 2019-08-03T03:46:40.591443: 190803-03:46:40,591 nipype.interface INFO: stdout 2019-08-03T03:46:40.591443:Resampling 190803-03:46:40,591 nipype.interface INFO: stdout 2019-08-03T03:46:40.591443:Output registration matrix is identity 190803-03:46:40,591 nipype.interface INFO: stdout 2019-08-03T03:46:40.591443: 190803-03:46:40,591 nipype.interface INFO: stdout 2019-08-03T03:46:40.591443:mri_vol2vol done 190803-03:46:42,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190803-03:46:42,774 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190803-03:46:42,783 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190803-03:46:42,785 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190803-03:46:43,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190803-03:46:43,984 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-NDARINV44K29WLN --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer 190803-03:46:44,591 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister". 190803-03:46:44,626 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.dat --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-NDARINV44K29WLN 190803-03:46:49,849 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190803-03:46:49,851 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190803-03:47:31,56 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190803-03:47:31,889 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190803-03:47:38,29 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190803-03:47:38,145 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190803-03:47:38,148 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 190803-03:48:19,210 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190803-03:49:20,984 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.bbregister". 190803-03:49:30,220 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190803-03:49:30,222 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190803-03:49:30,740 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190803-03:49:30,766 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190803-03:49:30,874 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190803-03:49:31,356 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190803-03:49:34,210 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190803-03:49:34,214 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190803-03:49:34,215 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190803-03:49:34,215 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190803-03:49:34,216 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190803-03:49:34,217 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190803-03:49:34,217 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190803-03:49:34,219 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190803-03:49:36,223 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190803-03:49:36,224 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190803-03:49:36,262 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190803-03:49:43,40 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_concat". 190803-03:49:43,46 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190803-03:49:44,61 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta_concat". 190803-03:49:45,749 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190803-03:49:45,751 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190803-03:49:45,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190803-03:49:45,761 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190803-03:49:46,545 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190803-03:49:46,826 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190803-03:49:49,750 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190803-03:49:49,753 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-03:49:49,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190803-03:49:49,761 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-03:49:54,501 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190803-03:49:54,507 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190803-03:49:59,216 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/mask_t1w_tfm". 190803-03:49:59,218 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-03:50:40,355 nipype.interface INFO: stdout 2019-08-03T03:50:40.355780: 190803-03:50:40,356 nipype.interface INFO: stdout 2019-08-03T03:50:40.355780:Matrix from LTA: 190803-03:50:40,356 nipype.interface INFO: stdout 2019-08-03T03:50:40.355780: 0.99997 -0.00629 -0.00364 0.18230; 190803-03:50:40,356 nipype.interface INFO: stdout 2019-08-03T03:50:40.355780: 0.00360 -0.00709 0.99997 14.43967; 190803-03:50:40,356 nipype.interface INFO: stdout 2019-08-03T03:50:40.355780:-0.00632 -0.99996 -0.00707 0.75766; 190803-03:50:40,356 nipype.interface INFO: stdout 2019-08-03T03:50:40.355780: 0.00000 0.00000 0.00000 1.00000; 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231: 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:movvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:targvol /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:outvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:regfile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:invert 0 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:tal 0 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:talres 2 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:regheader 0 190803-03:50:41,408 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:noresample 0 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:interp nearest (0) 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:precision float (3) 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:Gdiag_no -1 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:Synth 0 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:SynthSeed 1565632578 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231: 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:Final tkRAS-to-tkRAS Matrix is: 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231: 0.99997 -0.00629 -0.00364 0.18228; 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231: 0.00360 -0.00709 0.99997 14.43965; 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231:-0.00632 -0.99996 -0.00707 0.75768; 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.408231: 0.00000 0.00000 0.00000 1.00000; 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.409645: 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.409645: 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.409645:Vox2Vox Matrix is: 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.409645: 0.41666 -0.00152 0.00262 -8.54899; 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.409645:-0.00263 -0.00295 0.41665 -7.93274; 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.409645:-0.00150 -0.41665 -0.00296 89.91843; 190803-03:50:41,409 nipype.interface INFO: stdout 2019-08-03T03:50:41.409645: 0.00000 0.00000 0.00000 1.00000; 190803-03:50:43,732 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.mask_t1w_tfm". 190803-03:50:46,266 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.boldmask_to_t1w" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/boldmask_to_t1w". 190803-03:50:46,268 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-03:50:46,272 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190803-03:50:46,274 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190803-03:50:48,163 nipype.interface INFO: stdout 2019-08-03T03:50:48.163621: 190803-03:50:48,163 nipype.interface INFO: stdout 2019-08-03T03:50:48.163621:Resampling 190803-03:50:48,163 nipype.interface INFO: stdout 2019-08-03T03:50:48.163621:Output registration matrix is identity 190803-03:50:48,163 nipype.interface INFO: stdout 2019-08-03T03:50:48.163621: 190803-03:50:48,164 nipype.interface INFO: stdout 2019-08-03T03:50:48.163621:mri_vol2vol done 190803-03:50:48,675 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190803-03:51:18,410 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.boldmask_to_t1w". 190803-03:52:25,206 nipype.interface INFO: stdout 2019-08-03T03:52:25.206018: 190803-03:52:25,206 nipype.interface INFO: stdout 2019-08-03T03:52:25.206018:Matrix from LTA: 190803-03:52:25,206 nipype.interface INFO: stdout 2019-08-03T03:52:25.206018: 0.99818 0.03198 -0.05120 -2.31597; 190803-03:52:25,206 nipype.interface INFO: stdout 2019-08-03T03:52:25.206018: 0.05188 -0.02061 0.99844 11.12044; 190803-03:52:25,206 nipype.interface INFO: stdout 2019-08-03T03:52:25.206018: 0.03087 -0.99928 -0.02223 -1.12737; 190803-03:52:25,206 nipype.interface INFO: stdout 2019-08-03T03:52:25.206018: 0.00000 0.00000 0.00000 1.00000; 190803-03:52:26,174 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395: 190803-03:52:26,174 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:52:26,174 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:movvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190803-03:52:26,174 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:targvol /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:52:26,174 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:outvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190803-03:52:26,174 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:regfile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta 190803-03:52:26,174 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:invert 0 190803-03:52:26,174 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:tal 0 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:talres 2 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:regheader 0 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:noresample 0 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:interp nearest (0) 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:precision float (3) 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:Gdiag_no -1 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:Synth 0 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:SynthSeed 1565406561 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395: 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395:Final tkRAS-to-tkRAS Matrix is: 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395: 0.99818 0.03198 -0.05120 -2.31599; 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395: 0.05188 -0.02061 0.99844 11.12045; 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395: 0.03087 -0.99928 -0.02223 -1.12737; 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.174395: 0.00000 0.00000 0.00000 1.00000; 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.175803: 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.175803: 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.175803:Vox2Vox Matrix is: 190803-03:52:26,175 nipype.interface INFO: stdout 2019-08-03T03:52:26.175803: 0.41591 -0.02133 -0.01332 -2.83482; 190803-03:52:26,176 nipype.interface INFO: stdout 2019-08-03T03:52:26.175803: 0.01286 -0.00926 0.41637 -8.28604; 190803-03:52:26,176 nipype.interface INFO: stdout 2019-08-03T03:52:26.175803:-0.02162 -0.41602 -0.00859 91.74947; 190803-03:52:26,176 nipype.interface INFO: stdout 2019-08-03T03:52:26.175803: 0.00000 0.00000 0.00000 1.00000; 190803-03:52:31,914 nipype.interface INFO: stdout 2019-08-03T03:52:31.914312: 190803-03:52:31,914 nipype.interface INFO: stdout 2019-08-03T03:52:31.914312:Resampling 190803-03:52:31,914 nipype.interface INFO: stdout 2019-08-03T03:52:31.914312:Output registration matrix is identity 190803-03:52:31,915 nipype.interface INFO: stdout 2019-08-03T03:52:31.914312: 190803-03:52:31,915 nipype.interface INFO: stdout 2019-08-03T03:52:31.914312:mri_vol2vol done 190803-03:52:37,660 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190803-03:52:38,421 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister". 190803-03:52:38,424 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.dat --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-NDARINV44K29WLN 190803-03:52:38,433 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190803-03:52:38,436 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-NDARINV44K29WLN --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer 190803-03:54:57,218 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.bbregister". 190803-03:55:04,757 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190803-03:55:04,759 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190803-03:55:04,765 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190803-03:55:04,768 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190803-03:55:05,327 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190803-03:55:05,417 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190803-03:55:06,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190803-03:55:06,776 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190803-03:55:06,776 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190803-03:55:06,777 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190803-03:55:06,778 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190803-03:55:06,778 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190803-03:55:06,778 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190803-03:55:06,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190803-03:55:08,775 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190803-03:55:08,777 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190803-03:55:08,789 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190803-03:55:14,603 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_concat". 190803-03:55:14,605 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190803-03:55:15,294 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta_concat". 190803-03:55:18,70 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190803-03:55:18,73 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190803-03:55:18,79 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190803-03:55:18,81 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190803-03:55:18,885 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190803-03:55:19,25 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190803-03:55:22,91 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190803-03:55:22,93 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-03:55:22,102 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190803-03:55:22,103 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-03:55:25,933 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190803-03:55:26,104 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190803-03:55:29,629 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/mask_t1w_tfm". 190803-03:55:29,631 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-03:56:16,734 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.mask_t1w_tfm". 190803-03:56:17,394 nipype.interface INFO: stdout 2019-08-03T03:56:17.394011: 190803-03:56:17,394 nipype.interface INFO: stdout 2019-08-03T03:56:17.394011:Matrix from LTA: 190803-03:56:17,394 nipype.interface INFO: stdout 2019-08-03T03:56:17.394011: 0.99999 -0.00000 0.00432 0.48944; 190803-03:56:17,394 nipype.interface INFO: stdout 2019-08-03T03:56:17.394011:-0.00432 0.00941 0.99995 14.49207; 190803-03:56:17,394 nipype.interface INFO: stdout 2019-08-03T03:56:17.394011:-0.00004 -0.99996 0.00941 1.07651; 190803-03:56:17,394 nipype.interface INFO: stdout 2019-08-03T03:56:17.394011: 0.00000 0.00000 0.00000 1.00000; 190803-03:56:18,366 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413: 190803-03:56:18,366 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:56:18,366 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:movvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190803-03:56:18,366 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:targvol /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:56:18,366 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:outvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190803-03:56:18,366 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:regfile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190803-03:56:18,366 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:invert 0 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:tal 0 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:talres 2 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:regheader 0 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:noresample 0 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:interp nearest (0) 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:precision float (3) 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:Gdiag_no -1 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:Synth 0 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:SynthSeed 1565620138 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413: 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:Final tkRAS-to-tkRAS Matrix is: 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413: 0.99999 -0.00000 0.00432 0.48943; 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:-0.00432 0.00941 0.99995 14.49210; 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413:-0.00004 -0.99996 0.00941 1.07651; 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.366413: 0.00000 0.00000 0.00000 1.00000; 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.367821: 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.367821: 190803-03:56:18,367 nipype.interface INFO: stdout 2019-08-03T03:56:18.367821:Vox2Vox Matrix is: 190803-03:56:18,368 nipype.interface INFO: stdout 2019-08-03T03:56:18.367821: 0.41666 0.00180 0.00000 -8.76699; 190803-03:56:18,368 nipype.interface INFO: stdout 2019-08-03T03:56:18.367821:-0.00002 0.00392 0.41665 -9.27940; 190803-03:56:18,368 nipype.interface INFO: stdout 2019-08-03T03:56:18.367821: 0.00180 -0.41664 0.00392 88.63657; 190803-03:56:18,368 nipype.interface INFO: stdout 2019-08-03T03:56:18.367821: 0.00000 0.00000 0.00000 1.00000; 190803-03:56:18,636 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.boldmask_to_t1w" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/boldmask_to_t1w". 190803-03:56:18,639 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-03:56:18,646 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190803-03:56:18,649 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190803-03:56:20,975 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190803-03:56:25,784 nipype.interface INFO: stdout 2019-08-03T03:56:25.784279: 190803-03:56:25,784 nipype.interface INFO: stdout 2019-08-03T03:56:25.784279:Resampling 190803-03:56:25,784 nipype.interface INFO: stdout 2019-08-03T03:56:25.784279:Output registration matrix is identity 190803-03:56:25,784 nipype.interface INFO: stdout 2019-08-03T03:56:25.784279: 190803-03:56:25,784 nipype.interface INFO: stdout 2019-08-03T03:56:25.784279:mri_vol2vol done 190803-03:56:50,446 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.boldmask_to_t1w". 190803-03:58:19,156 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190803-03:58:20,854 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister". 190803-03:58:20,857 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.dat --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-NDARINV44K29WLN 190803-03:58:20,899 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.registration" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration". 190803-03:58:20,901 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190803-03:58:36,642 nipype.interface INFO: stdout 2019-08-03T03:58:36.642011: 190803-03:58:36,642 nipype.interface INFO: stdout 2019-08-03T03:58:36.642011:Matrix from LTA: 190803-03:58:36,642 nipype.interface INFO: stdout 2019-08-03T03:58:36.642011: 0.99999 -0.00406 -0.00029 0.37906; 190803-03:58:36,642 nipype.interface INFO: stdout 2019-08-03T03:58:36.642011: 0.00026 -0.00759 0.99997 13.62375; 190803-03:58:36,642 nipype.interface INFO: stdout 2019-08-03T03:58:36.642011:-0.00406 -0.99996 -0.00759 0.41438; 190803-03:58:36,643 nipype.interface INFO: stdout 2019-08-03T03:58:36.642011: 0.00000 0.00000 0.00000 1.00000; 190803-03:58:38,161 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372: 190803-03:58:38,161 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:58:38,161 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:movvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190803-03:58:38,161 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:targvol /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-03:58:38,161 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:outvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190803-03:58:38,161 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:regfile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta 190803-03:58:38,161 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:invert 0 190803-03:58:38,161 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:tal 0 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:talres 2 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:regheader 0 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:noresample 0 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:interp nearest (0) 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:precision float (3) 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:Gdiag_no -1 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:Synth 0 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:SynthSeed 1564991210 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372: 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:Final tkRAS-to-tkRAS Matrix is: 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372: 0.99999 -0.00406 -0.00029 0.37904; 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372: 0.00026 -0.00759 0.99997 13.62376; 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372:-0.00406 -0.99996 -0.00759 0.41441; 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.161372: 0.00000 0.00000 0.00000 1.00000; 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.162775: 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.162775: 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.162775:Vox2Vox Matrix is: 190803-03:58:38,162 nipype.interface INFO: stdout 2019-08-03T03:58:38.162775: 0.41666 -0.00012 0.00169 -8.69178; 190803-03:58:38,163 nipype.interface INFO: stdout 2019-08-03T03:58:38.162775:-0.00169 -0.00316 0.41665 -7.88268; 190803-03:58:38,163 nipype.interface INFO: stdout 2019-08-03T03:58:38.162775:-0.00011 -0.41665 -0.00316 89.42709; 190803-03:58:38,163 nipype.interface INFO: stdout 2019-08-03T03:58:38.162775: 0.00000 0.00000 0.00000 1.00000; 190803-03:58:48,2 nipype.interface INFO: stdout 2019-08-03T03:58:48.002204: 190803-03:58:48,2 nipype.interface INFO: stdout 2019-08-03T03:58:48.002204:Resampling 190803-03:58:48,2 nipype.interface INFO: stdout 2019-08-03T03:58:48.002204:Output registration matrix is identity 190803-03:58:48,2 nipype.interface INFO: stdout 2019-08-03T03:58:48.002204: 190803-03:58:48,3 nipype.interface INFO: stdout 2019-08-03T03:58:48.002204:mri_vol2vol done 190803-04:03:20,466 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.bbregister". 190803-04:03:31,512 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190803-04:03:31,514 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190803-04:03:31,521 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190803-04:03:31,524 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190803-04:03:32,689 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190803-04:03:32,806 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190803-04:03:35,588 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190803-04:03:35,592 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190803-04:03:35,593 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190803-04:03:35,593 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190803-04:03:35,594 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190803-04:03:35,595 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190803-04:03:35,595 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190803-04:03:35,597 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190803-04:03:37,534 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190803-04:03:37,536 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190803-04:03:37,546 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190803-04:03:47,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat". 190803-04:03:47,363 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190803-04:03:48,626 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_concat". 190803-04:03:51,418 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190803-04:03:51,420 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190803-04:03:51,428 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190803-04:03:51,430 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190803-04:03:52,634 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190803-04:03:52,699 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190803-04:03:55,634 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190803-04:03:55,636 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:03:55,644 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190803-04:03:55,645 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-04:04:00,613 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190803-04:04:00,664 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190803-04:04:06,313 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm". 190803-04:04:06,315 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-04:05:09,32 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.mask_t1w_tfm". 190803-04:05:11,610 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.boldmask_to_t1w" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/boldmask_to_t1w". 190803-04:05:11,613 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-04:05:11,616 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190803-04:05:11,618 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190803-04:05:15,945 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190803-04:06:16,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.boldmask_to_t1w". 190803-04:09:53,69 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.t1_seg". 190803-04:10:52,827 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_derivatives_wf/lut_t1_seg". 190803-04:10:52,829 nipype.workflow INFO: [Node] Running "lut_t1_seg" ("nipype.interfaces.utility.wrappers.Function") 190803-04:10:52,885 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/wm_roi". 190803-04:10:52,887 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:10:52,896 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_roi". 190803-04:10:52,898 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:10:52,907 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tpms_add_csf_wm". 190803-04:10:52,909 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190803-04:10:52,968 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/wm_roi". 190803-04:10:52,970 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:10:59,300 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg". 190803-04:11:05,732 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_roi". 190803-04:11:10,446 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tpms_add_csf_wm". 190803-04:11:35,857 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_roi". 190803-04:11:35,859 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:11:37,822 nipype.interface INFO: stdout 2019-08-03T04:11:37.822111: 190803-04:11:37,822 nipype.interface INFO: stdout 2019-08-03T04:11:37.822111:Matrix from LTA: 190803-04:11:37,822 nipype.interface INFO: stdout 2019-08-03T04:11:37.822111: 0.99998 0.00562 0.00396 0.58722; 190803-04:11:37,822 nipype.interface INFO: stdout 2019-08-03T04:11:37.822111:-0.00401 0.00960 0.99995 13.70496; 190803-04:11:37,822 nipype.interface INFO: stdout 2019-08-03T04:11:37.822111: 0.00558 -0.99994 0.00962 0.54358; 190803-04:11:37,822 nipype.interface INFO: stdout 2019-08-03T04:11:37.822111: 0.00000 0.00000 0.00000 1.00000; 190803-04:11:38,236 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tcc_tfm". 190803-04:11:38,238 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:11:38,248 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_tfm". 190803-04:11:38,251 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:11:40,402 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484: 190803-04:11:40,402 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-04:11:40,402 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:movvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190803-04:11:40,402 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:targvol /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/mri/brainmask.mgz 190803-04:11:40,402 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:outvol /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190803-04:11:40,402 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:regfile /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:invert 0 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:tal 0 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:talres 2 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:regheader 0 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:noresample 0 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:interp nearest (0) 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:precision float (3) 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:Gdiag_no -1 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:Synth 0 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:SynthSeed 1565749596 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484: 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:Final tkRAS-to-tkRAS Matrix is: 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484: 0.99998 0.00562 0.00396 0.58722; 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484:-0.00401 0.00960 0.99995 13.70498; 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484: 0.00558 -0.99994 0.00962 0.54358; 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.402484: 0.00000 0.00000 0.00000 1.00000; 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.403907: 190803-04:11:40,403 nipype.interface INFO: stdout 2019-08-03T04:11:40.403907: 190803-04:11:40,404 nipype.interface INFO: stdout 2019-08-03T04:11:40.403907:Vox2Vox Matrix is: 190803-04:11:40,404 nipype.interface INFO: stdout 2019-08-03T04:11:40.403907: 0.41666 0.00165 -0.00234 -8.48801; 190803-04:11:40,404 nipype.interface INFO: stdout 2019-08-03T04:11:40.403907: 0.00233 0.00401 0.41664 -9.36729; 190803-04:11:40,404 nipype.interface INFO: stdout 2019-08-03T04:11:40.403907: 0.00167 -0.41664 0.00400 88.31508; 190803-04:11:40,404 nipype.interface INFO: stdout 2019-08-03T04:11:40.403907: 0.00000 0.00000 0.00000 1.00000; 190803-04:11:41,774 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_tfm". 190803-04:11:41,844 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_tfm". 190803-04:11:44,439 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tcc_msk". 190803-04:11:44,441 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:11:44,462 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/csf_msk". 190803-04:11:44,464 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:11:44,889 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.csf_msk". 190803-04:11:44,918 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_msk". 190803-04:11:46,49 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_roi". 190803-04:11:48,503 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcompcor" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tcompcor". 190803-04:11:48,505 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190803-04:11:48,520 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_roi". 190803-04:11:48,522 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:11:48,541 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tcc_tfm". 190803-04:11:48,544 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:11:52,337 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_tfm". 190803-04:11:54,786 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tcc_msk". 190803-04:11:54,787 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:11:55,241 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_msk". 190803-04:11:56,309 nipype.interface INFO: stdout 2019-08-03T04:11:56.308925: 190803-04:11:56,309 nipype.interface INFO: stdout 2019-08-03T04:11:56.308925:Resampling 190803-04:11:56,309 nipype.interface INFO: stdout 2019-08-03T04:11:56.308925:Output registration matrix is identity 190803-04:11:56,309 nipype.interface INFO: stdout 2019-08-03T04:11:56.308925: 190803-04:11:56,309 nipype.interface INFO: stdout 2019-08-03T04:11:56.308925:mri_vol2vol done 190803-04:11:59,143 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcompcor" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tcompcor". 190803-04:11:59,145 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190803-04:12:12,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_roi". 190803-04:12:14,38 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_roi". 190803-04:12:15,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/wm_tfm". 190803-04:12:15,363 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/wm_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:12:17,770 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/wm_tfm". 190803-04:12:17,773 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/wm_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:12:18,740 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_tfm". 190803-04:12:21,132 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_tfm". 190803-04:12:21,973 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/wm_msk". 190803-04:12:21,975 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:12:22,378 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.wm_msk". 190803-04:12:24,336 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/wm_msk". 190803-04:12:24,338 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:12:24,765 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.wm_msk". 190803-04:12:28,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_tfm". 190803-04:12:28,870 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:12:31,423 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.signals" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/signals". 190803-04:12:31,425 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190803-04:12:32,504 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_tfm". 190803-04:12:35,800 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/csf_msk". 190803-04:12:35,802 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:12:36,299 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.csf_msk". 190803-04:12:42,586 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tpms_add_csf_wm". 190803-04:12:42,588 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190803-04:13:10,197 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcompcor". 190803-04:13:11,776 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_roi". 190803-04:13:12,959 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/tcc_metadata_fmt". 190803-04:13:12,960 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190803-04:13:14,498 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.tcc_metadata_fmt". 190803-04:13:15,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tpms_add_csf_wm". 190803-04:13:15,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_tfm". 190803-04:13:15,395 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:13:17,862 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.signals" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/signals". 190803-04:13:17,863 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190803-04:13:17,873 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_roi". 190803-04:13:17,875 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:13:18,400 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcompcor". 190803-04:13:18,801 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_tfm". 190803-04:13:22,116 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_msk". 190803-04:13:22,117 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:13:22,127 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/tcc_metadata_fmt". 190803-04:13:22,129 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190803-04:13:22,576 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_msk". 190803-04:13:23,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.tcc_metadata_fmt". 190803-04:13:31,14 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/wm_roi". 190803-04:13:31,16 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:13:31,26 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_roi". 190803-04:13:31,28 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:13:42,44 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.signals". 190803-04:13:44,256 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_roi". 190803-04:13:45,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.rois_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/rois_plot". 190803-04:13:45,378 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190803-04:13:47,889 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acompcor" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acompcor". 190803-04:13:47,891 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190803-04:14:29,38 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.signals". 190803-04:14:32,328 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tcc_tfm". 190803-04:14:32,330 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:14:35,823 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_tfm". 190803-04:14:38,648 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tcc_msk". 190803-04:14:38,650 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:14:39,166 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_msk". 190803-04:14:39,559 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_roi". 190803-04:14:42,934 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_tfm". 190803-04:14:42,937 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:14:43,33 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcompcor" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tcompcor". 190803-04:14:43,35 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190803-04:14:50,345 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_tfm". 190803-04:14:53,287 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_msk". 190803-04:14:53,288 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:14:53,788 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_msk". 190803-04:14:54,862 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_roi". 190803-04:15:01,954 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/wm_tfm". 190803-04:15:01,956 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/wm_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:15:01,966 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_tfm". 190803-04:15:01,968 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:15:05,433 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_tfm". 190803-04:15:05,565 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_tfm". 190803-04:15:08,235 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.rois_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/rois_plot". 190803-04:15:08,237 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190803-04:15:08,248 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acompcor" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acompcor". 190803-04:15:08,250 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190803-04:15:15,736 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acompcor". 190803-04:15:21,33 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/acc_metadata_fmt". 190803-04:15:21,34 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190803-04:15:25,134 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.acc_metadata_fmt". 190803-04:15:29,423 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.compcor_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/compcor_plot". 190803-04:15:29,425 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190803-04:15:37,165 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.compcor_plot". 190803-04:15:55,553 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcompcor". 190803-04:16:02,989 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.rois_plot". 190803-04:16:05,767 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/wm_msk". 190803-04:16:05,769 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:16:06,214 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.wm_msk". 190803-04:16:22,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acompcor". 190803-04:16:23,78 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/conf_corr_plot". 190803-04:16:23,79 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190803-04:16:23,97 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.model_expansion" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/model_expansion". 190803-04:16:23,99 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190803-04:16:27,816 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/acc_metadata_fmt". 190803-04:16:27,818 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190803-04:16:28,866 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.model_expansion". 190803-04:16:31,779 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.acc_metadata_fmt". 190803-04:16:36,15 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tcc_metadata_fmt". 190803-04:16:36,17 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190803-04:16:37,127 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tcc_metadata_fmt". 190803-04:16:38,334 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.spike_regressors" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_confounds_wf/spike_regressors". 190803-04:16:38,336 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190803-04:16:38,346 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.compcor_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/compcor_plot". 190803-04:16:38,348 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190803-04:16:42,510 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.spike_regressors". 190803-04:16:45,566 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.compcor_plot". 190803-04:16:55,17 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/conf_corr_plot". 190803-04:16:55,18 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190803-04:17:08,86 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.bbregister". 190803-04:17:08,668 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.rois_plot". 190803-04:17:22,414 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.model_expansion" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/model_expansion". 190803-04:17:22,416 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190803-04:17:22,426 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/csf_msk". 190803-04:17:22,427 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:17:22,828 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.csf_msk". 190803-04:17:27,989 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.model_expansion". 190803-04:17:30,14 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_confounds_wf.conf_corr_plot". 190803-04:17:32,765 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/tpms_add_csf_wm". 190803-04:17:32,767 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190803-04:17:32,825 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/wm_roi". 190803-04:17:32,827 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:17:37,551 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.spike_regressors" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_confounds_wf/spike_regressors". 190803-04:17:37,552 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190803-04:17:39,971 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_roi". 190803-04:17:39,973 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:17:39,982 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tpms_add_csf_wm". 190803-04:17:39,984 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190803-04:17:41,760 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.spike_regressors". 190803-04:17:49,232 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.tpms_add_csf_wm". 190803-04:17:52,897 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_roi". 190803-04:17:55,749 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.signals" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/signals". 190803-04:17:55,751 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190803-04:17:56,504 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tpms_add_csf_wm". 190803-04:18:00,302 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_roi". 190803-04:18:00,304 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:18:00,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.seg_rpt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/seg_rpt". 190803-04:18:00,395 nipype.workflow INFO: [Node] Running "seg_rpt" ("niworkflows.interfaces.masks.ROIsPlot") 190803-04:18:02,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_roi" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_roi". 190803-04:18:02,875 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190803-04:18:04,265 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_confounds_wf.conf_corr_plot". 190803-04:18:09,983 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190803-04:18:09,985 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190803-04:18:11,336 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190803-04:18:14,321 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190803-04:18:14,324 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190803-04:18:15,571 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190803-04:18:18,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190803-04:18:18,737 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190803-04:18:18,738 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190803-04:18:18,738 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190803-04:18:18,739 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190803-04:18:18,740 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190803-04:18:18,740 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190803-04:18:18,742 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190803-04:18:21,269 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190803-04:18:21,271 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190803-04:18:21,275 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190803-04:18:34,147 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat". 190803-04:18:34,149 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-NDARINV44K29WLN.lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190803-04:18:35,464 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_concat". 190803-04:18:38,474 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190803-04:18:38,477 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190803-04:18:39,854 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190803-04:18:42,875 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190803-04:18:42,878 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190803-04:18:44,244 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190803-04:18:47,300 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190803-04:18:47,303 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:18:53,14 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190803-04:18:53,897 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_roi". 190803-04:18:55,601 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190803-04:18:55,603 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/applyrefined/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-04:18:58,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/wm_tfm". 190803-04:18:58,280 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/wm_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:19:00,864 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190803-04:19:01,710 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_tfm". 190803-04:19:06,206 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.signals". 190803-04:19:07,17 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm". 190803-04:19:07,19 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-04:19:07,27 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/wm_msk". 190803-04:19:07,29 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:19:07,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.wm_msk". 190803-04:19:09,411 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tcc_tfm". 190803-04:19:09,413 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:19:12,102 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_tfm". 190803-04:19:12,104 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:19:12,787 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_tfm". 190803-04:19:15,553 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_tfm". 190803-04:19:16,429 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tcc_msk". 190803-04:19:16,431 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:19:16,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_msk". 190803-04:19:18,895 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/csf_msk". 190803-04:19:18,897 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:19:19,364 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.csf_msk". 190803-04:19:21,314 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcompcor" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tcompcor". 190803-04:19:21,316 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190803-04:19:23,947 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_roi". 190803-04:19:25,99 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_roi". 190803-04:19:28,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_tfm". 190803-04:19:28,378 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:19:28,386 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.signals" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/signals". 190803-04:19:28,388 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190803-04:19:28,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_tfm". 190803-04:19:28,400 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_roi/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190803-04:19:31,748 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_tfm". 190803-04:19:31,755 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_tfm". 190803-04:19:34,638 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_msk". 190803-04:19:34,640 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:19:34,649 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_msk". 190803-04:19:34,651 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-04:19:35,90 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_msk". 190803-04:19:35,99 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_msk". 190803-04:19:48,237 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.rois_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/rois_plot". 190803-04:19:48,239 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190803-04:19:48,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acompcor" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acompcor". 190803-04:19:48,253 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190803-04:20:04,565 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.seg_rpt". 190803-04:20:08,696 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acompcor" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acompcor". 190803-04:20:08,698 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190803-04:20:17,815 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.mask_t1w_tfm". 190803-04:20:21,191 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.boldmask_to_t1w" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/boldmask_to_t1w". 190803-04:20:21,194 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-04:21:31,805 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcompcor". 190803-04:21:35,252 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.boldmask_to_t1w". 190803-04:21:36,205 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190803-04:21:36,207 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190803-04:21:40,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190803-04:21:44,997 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/tcc_metadata_fmt". 190803-04:21:44,999 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190803-04:21:46,76 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.tcc_metadata_fmt". 190803-04:21:55,18 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.rois_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/rois_plot". 190803-04:21:55,20 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190803-04:23:05,485 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.signals". 190803-04:23:18,494 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acompcor". 190803-04:23:19,586 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acompcor". 190803-04:23:23,604 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/acc_metadata_fmt". 190803-04:23:23,605 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190803-04:23:27,175 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.acc_metadata_fmt". 190803-04:23:32,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.compcor_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/compcor_plot". 190803-04:23:32,830 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190803-04:23:39,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.compcor_plot". 190803-04:23:45,959 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/conf_corr_plot". 190803-04:23:45,961 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190803-04:23:45,970 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.model_expansion" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/model_expansion". 190803-04:23:46,9 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190803-04:23:48,340 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/acc_metadata_fmt". 190803-04:23:48,342 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190803-04:23:51,852 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.model_expansion". 190803-04:23:52,329 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.acc_metadata_fmt". 190803-04:24:03,151 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.rois_plot". 190803-04:24:05,983 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.compcor_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/compcor_plot". 190803-04:24:05,984 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190803-04:24:10,436 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.spike_regressors" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_confounds_wf/spike_regressors". 190803-04:24:10,438 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190803-04:24:11,696 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.rois_plot". 190803-04:24:12,552 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.compcor_plot". 190803-04:24:13,943 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.spike_regressors". 190803-04:24:47,632 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_confounds_wf.conf_corr_plot". 190803-04:24:53,847 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/conf_corr_plot". 190803-04:24:53,849 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190803-04:24:53,857 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.model_expansion" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/model_expansion". 190803-04:24:53,859 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190803-04:24:58,649 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.model_expansion". 190803-04:25:02,48 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.spike_regressors" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/spike_regressors". 190803-04:25:02,50 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190803-04:25:05,424 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.spike_regressors". 190803-04:25:49,926 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.conf_corr_plot". 190803-07:04:05,496 nipype.workflow INFO: [Node] Finished "_midthickness0". 190803-07:05:45,706 nipype.workflow INFO: [Node] Finished "_midthickness1". 190803-07:05:48,96 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190803-07:05:48,178 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190803-07:32:45,305 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190803-07:32:47,998 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness". 190803-07:32:48,1 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190803-07:32:48,3 nipype.workflow INFO: [Node] Cached "_midthickness0" - collecting precomputed outputs 190803-07:32:48,3 nipype.workflow INFO: [Node] "_midthickness0" found cached. 190803-07:32:48,4 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190803-07:32:48,5 nipype.workflow INFO: [Node] Cached "_midthickness1" - collecting precomputed outputs 190803-07:32:48,5 nipype.workflow INFO: [Node] "_midthickness1" found cached. 190803-07:32:48,6 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness". 190803-07:32:48,142 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/merge". 190803-07:32:48,347 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190803-07:32:49,898 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/save_midthickness". 190803-07:32:49,901 nipype.workflow INFO: [Node] Running "save_midthickness" ("nipype.interfaces.io.DataSink") 190803-07:32:50,529 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness". 190803-07:32:59,435 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190803-07:32:59,437 nipype.workflow INFO: [Node] Running "_fs_2_gii0" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/surf/rh.smoothwm /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0/rh.smoothwm_converted.gii 190803-07:32:59,445 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190803-07:32:59,447 nipype.workflow INFO: [Node] Running "_fs_2_gii1" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/surf/lh.smoothwm /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1/lh.smoothwm_converted.gii 190803-07:32:59,456 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190803-07:32:59,458 nipype.workflow INFO: [Node] Running "_fs_2_gii2" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/surf/rh.pial /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2/rh.pial_converted.gii 190803-07:32:59,467 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190803-07:32:59,469 nipype.workflow INFO: [Node] Running "_fs_2_gii3" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/surf/lh.pial /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3/lh.pial_converted.gii 190803-07:32:59,478 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190803-07:32:59,480 nipype.workflow INFO: [Node] Running "_fs_2_gii4" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/surf/rh.inflated /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4/rh.inflated_converted.gii 190803-07:32:59,507 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190803-07:32:59,509 nipype.workflow INFO: [Node] Running "_fs_2_gii5" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/surf/lh.inflated /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5/lh.inflated_converted.gii 190803-07:32:59,535 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190803-07:32:59,537 nipype.workflow INFO: [Node] Running "_fs_2_gii6" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/surf/rh.midthickness /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6/rh.midthickness_converted.gii 190803-07:33:32,748 nipype.workflow INFO: [Node] Finished "_fs_2_gii4". 190803-07:33:32,807 nipype.workflow INFO: [Node] Finished "_fs_2_gii0". 190803-07:33:32,865 nipype.workflow INFO: [Node] Finished "_fs_2_gii6". 190803-07:33:32,924 nipype.workflow INFO: [Node] Finished "_fs_2_gii1". 190803-07:33:32,951 nipype.workflow INFO: [Node] Finished "_fs_2_gii2". 190803-07:33:32,964 nipype.workflow INFO: [Node] Finished "_fs_2_gii3". 190803-07:33:33,51 nipype.workflow INFO: [Node] Finished "_fs_2_gii5". 190803-07:33:35,475 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190803-07:33:35,477 nipype.workflow INFO: [Node] Running "_fs_2_gii7" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer/sub-NDARINV44K29WLN/surf/lh.midthickness /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7/lh.midthickness_converted.gii 190803-07:33:58,286 nipype.workflow INFO: [Node] Finished "_fs_2_gii7". 190803-07:34:01,509 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii". 190803-07:34:01,513 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190803-07:34:01,514 nipype.workflow INFO: [Node] Cached "_fs_2_gii0" - collecting precomputed outputs 190803-07:34:01,514 nipype.workflow INFO: [Node] "_fs_2_gii0" found cached. 190803-07:34:01,515 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190803-07:34:01,516 nipype.workflow INFO: [Node] Cached "_fs_2_gii1" - collecting precomputed outputs 190803-07:34:01,516 nipype.workflow INFO: [Node] "_fs_2_gii1" found cached. 190803-07:34:01,517 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190803-07:34:01,518 nipype.workflow INFO: [Node] Cached "_fs_2_gii2" - collecting precomputed outputs 190803-07:34:01,518 nipype.workflow INFO: [Node] "_fs_2_gii2" found cached. 190803-07:34:01,524 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190803-07:34:01,525 nipype.workflow INFO: [Node] Cached "_fs_2_gii3" - collecting precomputed outputs 190803-07:34:01,525 nipype.workflow INFO: [Node] "_fs_2_gii3" found cached. 190803-07:34:01,526 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190803-07:34:01,527 nipype.workflow INFO: [Node] Cached "_fs_2_gii4" - collecting precomputed outputs 190803-07:34:01,527 nipype.workflow INFO: [Node] "_fs_2_gii4" found cached. 190803-07:34:01,563 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190803-07:34:01,564 nipype.workflow INFO: [Node] Cached "_fs_2_gii5" - collecting precomputed outputs 190803-07:34:01,564 nipype.workflow INFO: [Node] "_fs_2_gii5" found cached. 190803-07:34:01,565 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190803-07:34:01,566 nipype.workflow INFO: [Node] Cached "_fs_2_gii6" - collecting precomputed outputs 190803-07:34:01,566 nipype.workflow INFO: [Node] "_fs_2_gii6" found cached. 190803-07:34:01,605 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190803-07:34:01,606 nipype.workflow INFO: [Node] Cached "_fs_2_gii7" - collecting precomputed outputs 190803-07:34:01,606 nipype.workflow INFO: [Node] "_fs_2_gii7" found cached. 190803-07:34:01,648 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii". 190803-07:34:05,439 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190803-07:34:05,440 nipype.workflow INFO: [Node] Running "_fix_surfs0" ("niworkflows.interfaces.surf.NormalizeSurf") 190803-07:34:05,447 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190803-07:34:05,449 nipype.workflow INFO: [Node] Running "_fix_surfs1" ("niworkflows.interfaces.surf.NormalizeSurf") 190803-07:34:05,455 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190803-07:34:05,457 nipype.workflow INFO: [Node] Running "_fix_surfs2" ("niworkflows.interfaces.surf.NormalizeSurf") 190803-07:34:05,469 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190803-07:34:05,470 nipype.workflow INFO: [Node] Running "_fix_surfs3" ("niworkflows.interfaces.surf.NormalizeSurf") 190803-07:34:05,484 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190803-07:34:05,485 nipype.workflow INFO: [Node] Running "_fix_surfs4" ("niworkflows.interfaces.surf.NormalizeSurf") 190803-07:34:05,499 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190803-07:34:05,501 nipype.workflow INFO: [Node] Running "_fix_surfs5" ("niworkflows.interfaces.surf.NormalizeSurf") 190803-07:34:05,510 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190803-07:34:05,511 nipype.workflow INFO: [Node] Running "_fix_surfs6" ("niworkflows.interfaces.surf.NormalizeSurf") 190803-07:34:13,170 nipype.workflow INFO: [Node] Finished "_fix_surfs3". 190803-07:34:13,236 nipype.workflow INFO: [Node] Finished "_fix_surfs4". 190803-07:34:13,257 nipype.workflow INFO: [Node] Finished "_fix_surfs0". 190803-07:34:13,262 nipype.workflow INFO: [Node] Finished "_fix_surfs1". 190803-07:34:13,311 nipype.workflow INFO: [Node] Finished "_fix_surfs5". 190803-07:34:13,314 nipype.workflow INFO: [Node] Finished "_fix_surfs6". 190803-07:34:13,317 nipype.workflow INFO: [Node] Finished "_fix_surfs2". 190803-07:34:15,490 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190803-07:34:15,492 nipype.workflow INFO: [Node] Running "_fix_surfs7" ("niworkflows.interfaces.surf.NormalizeSurf") 190803-07:34:20,766 nipype.workflow INFO: [Node] Finished "_fix_surfs7". 190803-07:34:23,437 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs". 190803-07:34:23,440 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190803-07:34:23,441 nipype.workflow INFO: [Node] Cached "_fix_surfs0" - collecting precomputed outputs 190803-07:34:23,441 nipype.workflow INFO: [Node] "_fix_surfs0" found cached. 190803-07:34:23,442 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190803-07:34:23,443 nipype.workflow INFO: [Node] Cached "_fix_surfs1" - collecting precomputed outputs 190803-07:34:23,443 nipype.workflow INFO: [Node] "_fix_surfs1" found cached. 190803-07:34:23,444 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190803-07:34:23,444 nipype.workflow INFO: [Node] Cached "_fix_surfs2" - collecting precomputed outputs 190803-07:34:23,444 nipype.workflow INFO: [Node] "_fix_surfs2" found cached. 190803-07:34:23,445 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190803-07:34:23,446 nipype.workflow INFO: [Node] Cached "_fix_surfs3" - collecting precomputed outputs 190803-07:34:23,446 nipype.workflow INFO: [Node] "_fix_surfs3" found cached. 190803-07:34:23,489 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190803-07:34:23,490 nipype.workflow INFO: [Node] Cached "_fix_surfs4" - collecting precomputed outputs 190803-07:34:23,490 nipype.workflow INFO: [Node] "_fix_surfs4" found cached. 190803-07:34:23,491 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190803-07:34:23,492 nipype.workflow INFO: [Node] Cached "_fix_surfs5" - collecting precomputed outputs 190803-07:34:23,492 nipype.workflow INFO: [Node] "_fix_surfs5" found cached. 190803-07:34:23,536 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190803-07:34:23,537 nipype.workflow INFO: [Node] Cached "_fix_surfs6" - collecting precomputed outputs 190803-07:34:23,537 nipype.workflow INFO: [Node] "_fix_surfs6" found cached. 190803-07:34:23,538 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190803-07:34:23,539 nipype.workflow INFO: [Node] Cached "_fix_surfs7" - collecting precomputed outputs 190803-07:34:23,539 nipype.workflow INFO: [Node] "_fix_surfs7" found cached. 190803-07:34:23,585 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs". 190803-07:37:49,371 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.merge". 190803-07:41:21,591 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.resampling_xfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/resampling_xfm". 190803-07:41:21,593 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/resampling_xfm/out.lta --src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz 190803-07:41:22,462 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.resampling_xfm". 190803-07:41:23,329 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190803-07:41:23,330 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190803-07:41:23,335 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190803-07:41:24,965 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.set_xfm_source" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/set_xfm_source". 190803-07:41:24,967 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/resampling_xfm/out.lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190803-07:41:24,970 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190803-07:41:24,972 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190803-07:41:26,83 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.set_xfm_source". 190803-07:41:26,734 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190803-07:41:28,980 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.sampler" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_rh/sampler". 190803-07:41:28,985 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190803-07:41:28,989 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-NDARINV44K29WLN --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190803-07:41:29,52 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.sampler" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_lh/sampler". 190803-07:41:29,57 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190803-07:41:29,61 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-NDARINV44K29WLN --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190803-07:41:35,330 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190803-07:41:35,332 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190803-07:42:24,537 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190803-07:42:32,36 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190803-07:42:32,39 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190803-07:42:57,26 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190803-07:42:59,510 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190803-07:42:59,512 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190803-07:43:18,640 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190803-07:43:20,790 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190803-07:43:20,792 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190803-07:43:22,413 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190803-07:43:24,927 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190803-07:43:24,929 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190803-07:44:00,574 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190803-07:44:03,213 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190803-07:44:03,214 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190803-07:44:03,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190803-07:44:07,257 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190803-07:44:07,259 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190803-07:44:09,702 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190803-07:44:13,351 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190803-07:44:13,353 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190803-07:44:13,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190803-07:44:17,356 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190803-07:44:17,358 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190803-07:44:18,604 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190803-07:44:21,422 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190803-07:44:21,425 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190803-07:44:22,930 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190803-07:55:47,789 nipype.workflow INFO: [Node] Finished "_sampler0". 190803-07:55:47,824 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.sampler". 190803-07:55:50,87 nipype.workflow INFO: [Node] Finished "_sampler0". 190803-07:55:50,89 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.sampler". 190803-07:55:55,60 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190803-07:55:55,167 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190803-08:22:58,585 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190803-08:23:01,93 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/merge". 190803-08:23:01,229 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190803-08:23:02,854 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190803-08:23:02,856 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190803-08:23:02,857 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190803-08:23:02,861 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190803-08:26:34,636 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190803-08:26:34,853 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190803-08:26:37,570 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.update_metadata" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata". 190803-08:26:37,572 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190803-08:26:37,573 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190803-08:26:37,573 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190803-08:26:37,574 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190803-08:26:37,575 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190803-08:26:37,575 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190803-08:26:37,576 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_surf_wf.update_metadata". 190803-08:28:21,567 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.merge". 190803-08:31:56,274 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.resampling_xfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/resampling_xfm". 190803-08:31:56,277 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/resampling_xfm/out.lta --src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz 190803-08:31:56,984 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.resampling_xfm". 190803-08:31:57,796 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190803-08:31:57,797 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190803-08:31:57,802 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190803-08:31:59,197 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.set_xfm_source" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/set_xfm_source". 190803-08:31:59,199 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/resampling_xfm/out.lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190803-08:31:59,206 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190803-08:31:59,207 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190803-08:32:00,51 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.set_xfm_source". 190803-08:32:00,700 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190803-08:32:03,295 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.sampler" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_rh/sampler". 190803-08:32:03,300 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190803-08:32:03,304 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-NDARINV44K29WLN --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190803-08:32:03,350 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.sampler" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_lh/sampler". 190803-08:32:03,355 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190803-08:32:03,358 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-NDARINV44K29WLN --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190803-08:32:08,836 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190803-08:32:08,838 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190803-08:32:48,897 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190803-08:32:53,966 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190803-08:32:53,969 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190803-08:33:19,317 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190803-08:33:21,976 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190803-08:33:21,979 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190803-08:33:41,544 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190803-08:33:43,924 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190803-08:33:43,926 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190803-08:33:45,566 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190803-08:33:47,850 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190803-08:33:47,853 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190803-08:34:21,151 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190803-08:34:23,980 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190803-08:34:23,981 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190803-08:34:24,633 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190803-08:34:27,927 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190803-08:34:27,929 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190803-08:34:30,437 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190803-08:34:33,933 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190803-08:34:33,935 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190803-08:34:34,128 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190803-08:34:35,939 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190803-08:34:35,941 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190803-08:34:37,208 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190803-08:34:39,938 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190803-08:34:39,941 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190803-08:34:41,446 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190803-08:46:44,764 nipype.workflow INFO: [Node] Finished "_sampler0". 190803-08:46:44,770 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.sampler". 190803-08:46:47,549 nipype.workflow INFO: [Node] Finished "_sampler0". 190803-08:46:47,588 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.sampler". 190803-08:46:51,509 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190803-08:46:51,589 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190803-09:13:09,769 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190803-09:13:11,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/merge". 190803-09:13:12,33 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190803-09:13:13,493 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190803-09:13:13,495 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190803-09:13:13,503 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190803-09:13:13,505 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190803-09:17:09,834 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190803-09:17:11,101 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190803-09:17:14,208 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.update_metadata" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata". 190803-09:17:14,211 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190803-09:17:14,212 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190803-09:17:14,212 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190803-09:17:14,213 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190803-09:17:14,213 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190803-09:17:14,213 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190803-09:17:14,215 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_surf_wf.update_metadata". 190803-09:19:01,353 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.merge". 190803-09:22:41,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.resampling_xfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/resampling_xfm". 190803-09:22:41,521 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/resampling_xfm/out.lta --src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz 190803-09:22:42,462 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.resampling_xfm". 190803-09:22:43,196 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190803-09:22:43,198 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190803-09:22:43,203 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190803-09:22:44,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.set_xfm_source" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/set_xfm_source". 190803-09:22:44,794 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/resampling_xfm/out.lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190803-09:22:44,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190803-09:22:44,813 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190803-09:22:45,853 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.set_xfm_source". 190803-09:22:46,617 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190803-09:22:48,789 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.sampler" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_rh/sampler". 190803-09:22:48,794 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190803-09:22:48,797 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-NDARINV44K29WLN --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190803-09:22:48,845 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.sampler" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_lh/sampler". 190803-09:22:48,849 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190803-09:22:48,853 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-NDARINV44K29WLN --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190803-09:22:55,0 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190803-09:22:55,2 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190803-09:23:37,642 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190803-09:23:44,684 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190803-09:23:44,687 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190803-09:24:07,395 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190803-09:24:10,838 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190803-09:24:10,840 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190803-09:24:30,73 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190803-09:24:33,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190803-09:24:33,330 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190803-09:24:34,936 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190803-09:24:37,265 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190803-09:24:37,268 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190803-09:25:11,449 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190803-09:25:14,152 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190803-09:25:14,153 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190803-09:25:14,856 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190803-09:25:18,41 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190803-09:25:18,43 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190803-09:25:21,13 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190803-09:25:24,43 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190803-09:25:24,44 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190803-09:25:24,216 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190803-09:25:26,51 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190803-09:25:26,53 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190803-09:25:27,306 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190803-09:25:30,39 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190803-09:25:30,41 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190803-09:25:31,638 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190803-09:30:12,815 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.registration". 190803-09:30:17,673 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_mask". 190803-09:30:17,675 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/refine/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /home/CBLuser/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:30:17,687 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_moving". 190803-09:30:17,689 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_trans.nii.gz --reference-image /home/CBLuser/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:30:17,847 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190803-09:30:17,900 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190803-09:30:17,968 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_seg". 190803-09:30:17,971 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/t1_seg/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /home/CBLuser/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:30:19,880 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms0". 190803-09:30:19,883 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms1". 190803-09:30:19,885 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/t1_seg/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /home/CBLuser/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:30:19,889 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/t1_seg/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /home/CBLuser/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:30:19,900 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms2". 190803-09:30:19,903 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/t1_seg/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-NDARINV44K29WLN_run-01_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /home/CBLuser/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:37:57,479 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190803-09:37:58,422 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190803-09:38:10,105 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190803-09:38:14,141 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms". 190803-09:38:14,145 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms0". 190803-09:38:14,146 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190803-09:38:14,147 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190803-09:38:14,148 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms1". 190803-09:38:14,149 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190803-09:38:14,149 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190803-09:38:14,150 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms2". 190803-09:38:14,163 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190803-09:38:14,164 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190803-09:38:14,166 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190803-09:38:55,816 nipype.workflow INFO: [Node] Finished "_sampler0". 190803-09:38:55,822 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.sampler". 190803-09:38:56,546 nipype.workflow INFO: [Node] Finished "_sampler0". 190803-09:38:56,548 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.sampler". 190803-09:39:05,531 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190803-09:39:05,532 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190803-09:39:05,541 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190803-09:39:05,543 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190803-09:41:19,148 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190803-09:42:49,285 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190803-09:42:49,394 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190803-09:42:53,261 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.update_metadata" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata". 190803-09:42:53,264 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190803-09:42:53,264 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190803-09:42:53,264 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190803-09:42:53,265 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190803-09:42:53,266 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190803-09:42:53,266 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190803-09:42:53,267 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_surf_wf.update_metadata". 190803-09:51:58,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190803-09:51:59,402 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/merge". 190803-09:51:59,432 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190803-09:52:42,909 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190803-09:52:47,515 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/norm_msk". 190803-09:52:47,517 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190803-09:52:51,828 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190803-09:52:54,26 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/norm_rpt". 190803-09:52:54,28 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190803-09:53:07,6 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190803-09:53:08,45 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.outputnode" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/outputnode". 190803-09:53:08,47 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/lut_tpl_seg". 190803-09:53:08,48 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190803-09:53:08,62 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190803-09:53:08,67 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.outputnode". 190803-09:53:08,718 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190803-09:53:20,472 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190803-09:53:24,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190803-09:53:24,149 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190803-09:53:24,165 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190803-09:53:24,167 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190803-09:53:24,190 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190803-09:53:24,193 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190803-09:53:24,238 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190803-09:53:24,240 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190803-09:53:25,531 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.gen_ref". 190803-09:53:25,551 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.gen_ref". 190803-09:53:25,563 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.gen_ref". 190803-09:53:25,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.gen_ref". 190803-09:53:26,866 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.merge". 190803-09:53:56,40 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.resampling_xfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/resampling_xfm". 190803-09:53:56,43 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/resampling_xfm/out.lta --src /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-NDARINV44K29WLN_run-01_T1w_corrected_xform.nii.gz 190803-09:53:56,233 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.resampling_xfm". 190803-09:53:56,318 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190803-09:53:56,320 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190803-09:53:56,324 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190803-09:53:56,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190803-09:53:56,329 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:53:56,348 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190803-09:53:56,350 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:53:56,431 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190803-09:53:56,463 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190803-09:53:56,466 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190803-09:53:56,469 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-09:53:56,478 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190803-09:53:56,480 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:53:56,490 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190803-09:53:56,492 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:53:56,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190803-09:53:56,506 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-09:53:58,599 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.set_xfm_source" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/set_xfm_source". 190803-09:53:58,601 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/resampling_xfm/out.lta /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190803-09:53:58,610 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190803-09:53:58,611 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190803-09:54:00,212 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.set_xfm_source". 190803-09:54:03,613 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.sampler" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_rh/sampler". 190803-09:54:03,618 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190803-09:54:03,621 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-NDARINV44K29WLN --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190803-09:54:14,395 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190803-09:54:18,425 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.sampler" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_lh/sampler". 190803-09:54:18,429 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190803-09:54:18,433 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-NDARINV44K29WLN --reg /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190803-09:56:10,286 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.mask_std_tfm". 190803-09:56:11,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.mask_std_tfm". 190803-09:56:23,239 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190803-09:56:23,242 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190803-09:56:26,199 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190803-09:56:26,201 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190803-09:56:31,739 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190803-09:56:39,386 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190803-09:56:39,389 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190803-09:56:50,802 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190803-09:56:52,630 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.aseg_std_tfm". 190803-09:56:54,25 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190803-09:56:54,28 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:56:54,416 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.aseg_std_tfm". 190803-09:56:56,554 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.aparc_std_tfm". 190803-09:56:56,772 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.aparc_std_tfm". 190803-09:57:02,43 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190803-09:57:02,54 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:57:20,539 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190803-09:57:20,548 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-09:57:20,542 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190803-09:57:20,552 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:57:20,636 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190803-09:57:20,639 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190803-09:57:25,121 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190803-09:57:34,824 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190803-09:57:34,826 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190803-09:58:06,896 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190803-09:58:11,847 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190803-09:58:11,849 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190803-09:58:37,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190803-09:58:40,554 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190803-09:58:40,556 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190803-09:58:42,645 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190803-09:58:47,208 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190803-09:58:47,211 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190803-09:59:32,136 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190803-09:59:35,940 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190803-09:59:35,942 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190803-09:59:36,812 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190803-09:59:39,71 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm". 190803-09:59:40,526 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190803-09:59:40,528 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190803-09:59:43,830 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190803-09:59:45,238 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm". 190803-09:59:48,641 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190803-09:59:48,644 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref/tpl-MNI152NLin6Asym_res-01_T1w_reference.nii.gz --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190803-09:59:51,325 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190803-09:59:51,327 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190803-09:59:51,539 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190803-09:59:53,460 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm". 190803-09:59:55,540 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190803-09:59:55,542 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190803-09:59:58,275 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190803-09:59:58,277 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190803-09:59:59,976 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190803-10:00:03,487 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190803-10:00:07,52 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190803-10:00:07,54 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190803-10:00:08,958 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190803-10:00:23,456 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm". 190803-10:00:24,537 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm". 190803-10:01:34,825 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm". 190803-10:01:41,415 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190803-10:01:41,418 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190803-10:01:48,189 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190803-10:10:54,24 nipype.workflow INFO: [Node] Finished "_sampler0". 190803-10:10:54,38 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.sampler". 190803-10:11:02,347 nipype.workflow INFO: [Node] Finished "_sampler0". 190803-10:11:02,388 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.sampler". 190803-10:11:07,418 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190803-10:11:07,483 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190803-10:42:05,317 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_to_std_transform". 190803-10:42:08,922 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190803-10:42:09,96 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190803-10:42:10,582 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190803-10:42:10,583 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190803-10:42:10,592 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190803-10:42:10,594 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190803-10:45:46,8 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190803-10:46:10,548 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190803-10:46:13,316 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.update_metadata" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata". 190803-10:46:13,319 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190803-10:46:13,319 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190803-10:46:13,319 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190803-10:46:13,320 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190803-10:46:13,321 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190803-10:46:13,321 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190803-10:46:13,322 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_surf_wf.update_metadata". 190803-10:53:40,674 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.merge". 190803-10:56:03,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_to_std_transform". 190803-10:56:46,392 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190803-10:56:46,393 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190803-10:56:46,434 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.validate". 190803-10:56:46,652 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190803-10:56:46,690 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190803-10:56:46,716 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190803-10:56:46,753 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190803-10:56:50,94 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190803-10:56:50,96 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190803-10:57:03,137 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190803-10:57:12,132 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190803-10:57:12,134 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190803-10:58:11,132 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190803-10:58:14,589 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.outputnode" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/outputnode". 190803-10:58:14,592 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190803-10:58:14,621 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.outputnode". 190803-10:58:18,530 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190803-10:58:18,532 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190803-10:58:43,783 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190803-10:58:46,434 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190803-10:58:46,436 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190803-10:59:17,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190803-10:59:20,339 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190803-10:59:20,342 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190803-10:59:22,213 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190803-10:59:24,416 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190803-10:59:24,419 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190803-11:00:07,975 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190803-11:00:10,442 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190803-11:00:10,443 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190803-11:00:11,294 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190803-11:00:14,455 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190803-11:00:14,458 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190803-11:00:17,181 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190803-11:00:20,220 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190803-11:00:20,222 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190803-11:00:20,497 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190803-11:00:22,589 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190803-11:00:22,591 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190803-11:00:26,118 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190803-11:00:28,509 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190803-11:00:28,511 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_04_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190803-11:00:30,299 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_04_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190803-11:06:26,652 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.merge". 190803-11:16:39,165 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190803-11:16:39,167 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190803-11:16:39,288 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.validate". 190803-11:16:42,658 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190803-11:16:42,660 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190803-11:16:53,628 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190803-11:17:00,576 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190803-11:17:00,697 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190803-11:33:34,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform". 190803-11:33:37,383 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190803-11:33:37,385 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190803-11:33:37,885 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190803-11:33:38,69 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190803-11:34:38,91 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190803-11:34:41,604 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.outputnode" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/outputnode". 190803-11:34:41,607 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190803-11:34:41,611 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.outputnode". 190803-11:34:45,778 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190803-11:34:45,781 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190803-11:35:05,914 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190803-11:35:09,450 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190803-11:35:09,452 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190803-11:35:40,539 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190803-11:35:43,415 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190803-11:35:43,417 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190803-11:35:45,438 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190803-11:35:47,461 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190803-11:35:47,464 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190803-11:36:30,710 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190803-11:36:33,532 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190803-11:36:33,533 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190803-11:36:34,357 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190803-11:36:37,492 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190803-11:36:37,495 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190803-11:36:41,265 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190803-11:36:43,515 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190803-11:36:43,516 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190803-11:36:43,777 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190803-11:36:45,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190803-11:36:45,557 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190803-11:36:46,970 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190803-11:36:48,922 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190803-11:36:48,925 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_03_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190803-11:36:49,542 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_03_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190803-11:42:21,689 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.merge". 190803-11:49:47,966 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190803-11:49:47,968 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190803-11:49:48,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate". 190803-11:49:51,481 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190803-11:49:51,482 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190803-11:50:01,868 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190803-11:50:08,506 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190803-11:50:08,509 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190803-11:51:04,43 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190803-11:51:06,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.outputnode" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/outputnode". 190803-11:51:06,557 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190803-11:51:06,561 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.outputnode". 190803-11:51:10,427 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190803-11:51:10,430 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190803-11:51:30,410 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190803-11:51:33,901 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190803-11:51:33,904 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190803-11:52:03,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190803-11:52:05,857 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190803-11:52:05,859 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190803-11:52:07,358 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190803-11:52:09,975 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190803-11:52:09,990 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190803-11:52:42,894 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190803-11:52:45,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190803-11:52:45,136 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190803-11:52:45,456 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190803-11:52:47,73 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190803-11:52:47,75 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190803-11:52:47,190 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform". 190803-11:52:47,477 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190803-11:52:48,628 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190803-11:52:48,630 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190803-11:52:48,682 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190803-11:52:48,713 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.merge" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190803-11:52:48,729 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190803-11:52:50,796 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190803-11:52:50,799 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190803-11:52:51,75 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190803-11:52:52,796 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190803-11:52:52,798 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190803-11:52:53,147 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190803-11:53:46,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.merge". 190803-11:54:42,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190803-11:54:42,313 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190803-11:54:42,353 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate". 190803-11:54:44,485 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190803-11:54:44,486 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190803-11:54:45,604 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190803-11:54:48,487 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190803-11:54:48,489 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190803-11:54:54,717 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190803-11:54:56,495 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.outputnode" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/outputnode". 190803-11:54:56,497 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190803-11:54:56,502 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.outputnode". 190803-11:54:56,920 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190803-11:54:56,922 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190803-11:54:58,880 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190803-11:55:00,499 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190803-11:55:00,502 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190803-11:55:03,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190803-11:55:04,501 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190803-11:55:04,503 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190803-11:55:04,680 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190803-11:55:06,501 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190803-11:55:06,504 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190803-11:55:11,61 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190803-11:55:12,507 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190803-11:55:12,508 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190803-11:55:12,594 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190803-11:55:14,506 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190803-11:55:14,508 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190803-11:55:14,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190803-11:55:16,510 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190803-11:55:16,512 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190803-11:55:16,544 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190803-11:55:18,513 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190803-11:55:18,515 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190803-11:55:18,662 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190803-11:55:20,513 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190803-11:55:20,515 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/7515861.1.all.q/fmriprep_wf/single_subject_NDARINV44K29WLN_wf/func_preproc_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190803-11:55:20,710 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_NDARINV44K29WLN_wf.func_preproc_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" Error in atexit._run_exitfuncs: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/concurrent/futures/process.py", line 101, in _python_exit thread_wakeup.wakeup() File "/usr/local/miniconda/lib/python3.7/concurrent/futures/process.py", line 89, in wakeup self._writer.send_bytes(b"") File "/usr/local/miniconda/lib/python3.7/multiprocessing/connection.py", line 183, in send_bytes self._check_closed() File "/usr/local/miniconda/lib/python3.7/multiprocessing/connection.py", line 136, in _check_closed raise OSError("handle is closed") OSError: handle is closed