Running script 190722-15:14:58,293 nipype.workflow IMPORTANT: Running fMRIPREP version 1.4.1: * BIDS dataset path: /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep. * Participant list: ['1468']. * Run identifier: 20190722-151458_1771fef9-d970-4588-bb84-101b771e4442. 190722-15:15:00,482 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/func/sub-1468_ses-1_task-INF_bold.nii.gz" (2.33 GB / 2400 TRs). Memory resampled/largemem=9.31/65.18 GB. 190722-15:15:00,485 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-1_task-INF_bold.nii.gz 190722-15:15:00,777 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/func/sub-1468_ses-1_task-INF_bold.nii.gz). 190722-15:15:01,413 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:03,590 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/func/sub-1468_ses-1_task-Memory_bold.nii.gz" (1.13 GB / 1166 TRs). Memory resampled/largemem=4.51/17.66 GB. 190722-15:15:03,592 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-1_task-Memory_bold.nii.gz 190722-15:15:03,874 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/func/sub-1468_ses-1_task-Memory_bold.nii.gz). 190722-15:15:04,609 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:06,727 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/func/sub-1468_ses-1_task-Memorya_bold.nii.gz" (0.13 GB / 130 TRs). Memory resampled/largemem=0.51/0.67 GB. 190722-15:15:06,729 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-1_task-Memorya_bold.nii.gz 190722-15:15:07,13 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/func/sub-1468_ses-1_task-Memorya_bold.nii.gz). 190722-15:15:07,647 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:09,826 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/func/sub-1468_ses-1_task-rest_bold.nii.gz" (0.56 GB / 580 TRs). Memory resampled/largemem=2.24/5.49 GB. 190722-15:15:09,827 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-1_task-rest_bold.nii.gz 190722-15:15:10,109 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/func/sub-1468_ses-1_task-rest_bold.nii.gz). 190722-15:15:10,745 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:12,966 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-Memory_bold.nii.gz" (0.12 GB / 130 TRs). Memory resampled/largemem=0.50/0.66 GB. 190722-15:15:12,967 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-2_task-Memory_bold.nii.gz 190722-15:15:13,249 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-Memory_bold.nii.gz). 190722-15:15:13,888 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:16,12 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-Memorya_bold.nii.gz" (1.10 GB / 1150 TRs). Memory resampled/largemem=4.40/17.03 GB. 190722-15:15:16,13 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-2_task-Memorya_bold.nii.gz 190722-15:15:16,294 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-Memorya_bold.nii.gz). 190722-15:15:16,931 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:19,78 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-rest_bold.nii.gz" (0.55 GB / 580 TRs). Memory resampled/largemem=2.22/5.43 GB. 190722-15:15:19,80 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-2_task-rest_bold.nii.gz 190722-15:15:19,361 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-rest_bold.nii.gz). 190722-15:15:19,997 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:22,144 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/func/sub-1468_ses-4_task-Memory_bold.nii.gz" (1.14 GB / 1210 TRs). Memory resampled/largemem=4.56/18.35 GB. 190722-15:15:22,145 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-4_task-Memory_bold.nii.gz 190722-15:15:22,428 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/func/sub-1468_ses-4_task-Memory_bold.nii.gz). 190722-15:15:23,63 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:25,244 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/func/sub-1468_ses-4_task-Memorya_bold.nii.gz" (0.02 GB / 22 TRs). Memory resampled/largemem=0.08/0.10 GB. 190722-15:15:25,245 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-4_task-Memorya_bold.nii.gz 190722-15:15:25,528 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/func/sub-1468_ses-4_task-Memorya_bold.nii.gz). 190722-15:15:26,170 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:28,382 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/func/sub-1468_ses-4_task-Memoryb_bold.nii.gz" (0.12 GB / 130 TRs). Memory resampled/largemem=0.49/0.64 GB. 190722-15:15:28,383 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-4_task-Memoryb_bold.nii.gz 190722-15:15:28,666 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/func/sub-1468_ses-4_task-Memoryb_bold.nii.gz). 190722-15:15:29,302 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:31,465 nipype.workflow IMPORTANT: Creating bold processing workflow for "/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/func/sub-1468_ses-4_task-rest_bold.nii.gz" (0.55 GB / 580 TRs). Memory resampled/largemem=2.18/5.35 GB. 190722-15:15:31,466 nipype.workflow IMPORTANT: No single-band-reference found for sub-1468_ses-4_task-rest_bold.nii.gz 190722-15:15:31,747 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/func/sub-1468_ses-4_task-rest_bold.nii.gz). 190722-15:15:32,381 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190722-15:15:40,107 nipype.workflow IMPORTANT: Works derived from this fMRIPrep execution should include the following boilerplate: Results included in this manuscript come from preprocessing performed using *fMRIPrep* 1.4.1 (@fmriprep1; @fmriprep2; RRID:SCR_016216), which is based on *Nipype* 1.2.0 (@nipype1; @nipype2; RRID:SCR_002502). Anatomical data preprocessing : A total of 3 T1-weighted (T1w) images were found within the input BIDS dataset. All of them were corrected for intensity non-uniformity (INU) with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.2.0 [@ants, RRID:SCR_004757]. The T1w-reference was then skull-stripped with a *Nipype* implementation of the `antsBrainExtraction.sh` workflow (from ANTs), using OASIS30ANTs as target template. Brain tissue segmentation of cerebrospinal fluid (CSF), white-matter (WM) and gray-matter (GM) was performed on the brain-extracted T1w using `fast` [FSL 5.0.9, RRID:SCR_002823, @fsl_fast]. A T1w-reference map was computed after registration of 3 T1w images (after INU-correction) using `mri_robust_template` [FreeSurfer 6.0.1, @fs_template]. Brain surfaces were reconstructed using `recon-all` [FreeSurfer 6.0.1, RRID:SCR_001847, @fs_reconall], and the brain mask estimated previously was refined with a custom variation of the method to reconcile ANTs-derived and FreeSurfer-derived segmentations of the cortical gray-matter of Mindboggle [RRID:SCR_002438, @mindboggle]. Volume-based spatial normalization to one standard space (MNI152NLin2009cAsym) was performed through nonlinear registration with `antsRegistration` (ANTs 2.2.0), using brain-extracted versions of both T1w reference and the T1w template. The following template was selected for spatial normalization: *ICBM 152 Nonlinear Asymmetrical template version 2009c* [@mni152nlin2009casym, RRID:SCR_008796; TemplateFlow ID: MNI152NLin2009cAsym]. Functional data preprocessing : For each of the 11 BOLD runs found per subject (across all tasks and sessions), the following preprocessing was performed. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. The BOLD reference was then co-registered to the T1w reference using `bbregister` (FreeSurfer) which implements boundary-based registration [@bbr]. Co-registration was configured with nine degrees of freedom to account for distortions remaining in the BOLD reference. Head-motion parameters with respect to the BOLD reference (transformation matrices, and six corresponding rotation and translation parameters) are estimated before any spatiotemporal filtering using `mcflirt` [FSL 5.0.9, @mcflirt]. The BOLD time-series, were resampled to surfaces on the following spaces: *fsaverage5*. The BOLD time-series (including slice-timing correction when applied) were resampled onto their original, native space by applying a single, composite transform to correct for head-motion and susceptibility distortions. These resampled BOLD time-series will be referred to as *preprocessed BOLD in original space*, or just *preprocessed BOLD*. The BOLD time-series were resampled into standard space, generating a *preprocessed BOLD run in ['MNI152NLin2009cAsym'] space*. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. Several confounding time-series were calculated based on the *preprocessed BOLD*: framewise displacement (FD), DVARS and three region-wise global signals. FD and DVARS are calculated for each functional run, both using their implementations in *Nipype* [following the definitions by @power_fd_dvars]. The three global signals are extracted within the CSF, the WM, and the whole-brain masks. Additionally, a set of physiological regressors were extracted to allow for component-based noise correction [*CompCor*, @compcor]. Principal components are estimated after high-pass filtering the *preprocessed BOLD* time-series (using a discrete cosine filter with 128s cut-off) for the two *CompCor* variants: temporal (tCompCor) and anatomical (aCompCor). tCompCor components are then calculated from the top 5% variable voxels within a mask covering the subcortical regions. This subcortical mask is obtained by heavily eroding the brain mask, which ensures it does not include cortical GM regions. For aCompCor, components are calculated within the intersection of the aforementioned mask and the union of CSF and WM masks calculated in T1w space, after their projection to the native space of each functional run (using the inverse BOLD-to-T1w transformation). Components are also calculated separately within the WM and CSF masks. For each CompCor decomposition, the *k* components with the largest singular values are retained, such that the retained components' time series are sufficient to explain 50 percent of variance across the nuisance mask (CSF, WM, combined, or temporal). The remaining components are dropped from consideration. The head-motion estimates calculated in the correction step were also placed within the corresponding confounds file. The confound time series derived from head motion estimates and global signals were expanded with the inclusion of temporal derivatives and quadratic terms for each [@confounds_satterthwaite_2013]. Frames that exceeded a threshold of 0.5 mm FD or 1.5 standardised DVARS were annotated as motion outliers. All resamplings can be performed with *a single interpolation step* by composing all the pertinent transformations (i.e. head-motion transform matrices, susceptibility distortion correction when available, and co-registrations to anatomical and output spaces). Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs), configured with Lanczos interpolation to minimize the smoothing effects of other kernels [@lanczos]. Non-gridded (surface) resamplings were performed using `mri_vol2surf` (FreeSurfer). Many internal operations of *fMRIPrep* use *Nilearn* 0.5.2 [@nilearn, RRID:SCR_001362], mostly within the functional processing workflow. For more details of the pipeline, see [the section corresponding to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation"). ### References Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage6, fsnative, fsaverage, fsaverage5) was selected. Adding default "fsaverage5" to the list of output spaces. 190722-15:16:37,151 nipype.workflow WARNING: Some nodes exceed the total amount of memory available (112.71GB). 190722-15:16:39,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/func_derivatives_wf/raw_sources". 190722-15:16:39,255 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:16:39,260 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.func_derivatives_wf.raw_sources". 190722-15:16:39,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/func_derivatives_wf/raw_sources". 190722-15:16:39,362 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/func_derivatives_wf/raw_sources". 190722-15:16:39,365 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:16:39,365 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:16:39,370 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.func_derivatives_wf.raw_sources". 190722-15:16:39,370 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.func_derivatives_wf.raw_sources". 190722-15:16:39,508 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/func_derivatives_wf/raw_sources". 190722-15:16:39,514 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:16:39,519 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.func_derivatives_wf.raw_sources". 190722-15:16:42,272 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/func_derivatives_wf/raw_sources". 190722-15:16:42,274 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/func_derivatives_wf/raw_sources". 190722-15:16:42,275 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:16:42,277 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:16:42,278 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.func_derivatives_wf.raw_sources". 190722-15:16:42,280 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.func_derivatives_wf.raw_sources". 190722-15:16:42,342 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/validate". 190722-15:16:42,345 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:16:42,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/validate". 190722-15:16:42,400 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:16:42,708 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/validate". 190722-15:16:42,711 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:16:42,913 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/validate". 190722-15:16:42,917 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:16:43,572 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/func_derivatives_wf/raw_sources". 190722-15:16:43,576 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:16:43,579 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.func_derivatives_wf.raw_sources". 190722-15:16:45,269 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/validate". 190722-15:16:45,274 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:16:45,332 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.validate". 190722-15:16:45,558 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/func_derivatives_wf/raw_sources". 190722-15:16:45,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/validate". 190722-15:16:45,564 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:16:45,567 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:16:45,568 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.func_derivatives_wf.raw_sources". 190722-15:16:45,621 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.validate". 190722-15:16:46,779 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/validate". 190722-15:16:46,784 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:16:46,838 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.validate". 190722-15:16:47,557 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_split". 190722-15:16:47,560 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-Memory_bold.nii.gz -t 190722-15:16:47,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_split". 190722-15:16:47,961 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-Memorya_bold.nii.gz -t 190722-15:16:48,324 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/gen_ref". 190722-15:16:48,326 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:16:50,196 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.validate". 190722-15:16:51,153 nipype.interface INFO: stderr 2019-07-22T15:16:51.153742:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-15:16:51,154 nipype.interface INFO: stderr 2019-07-22T15:16:51.153742:++ Authored by: RW Cox 190722-15:16:51,177 nipype.interface INFO: stderr 2019-07-22T15:16:51.177921:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-15:16:51,178 nipype.interface INFO: stderr 2019-07-22T15:16:51.177921: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-15:16:51,178 nipype.interface INFO: stderr 2019-07-22T15:16:51.177921: or viewing/combining it with volumes of differing obliquity, 190722-15:16:51,178 nipype.interface INFO: stderr 2019-07-22T15:16:51.177921: you should consider running: 190722-15:16:51,178 nipype.interface INFO: stderr 2019-07-22T15:16:51.177921: 3dWarp -deoblique 190722-15:16:51,178 nipype.interface INFO: stderr 2019-07-22T15:16:51.177921: on this and other oblique datasets in the same session. 190722-15:16:51,178 nipype.interface INFO: stderr 2019-07-22T15:16:51.177921: See 3dWarp -help for details. 190722-15:16:51,178 nipype.interface INFO: stderr 2019-07-22T15:16:51.177921:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/gen_ref/slice.nii.gz is 13.199993 degrees from plumb. 190722-15:16:51,178 nipype.interface INFO: stderr 2019-07-22T15:16:51.178894:++ Coarse del was 10, replaced with 6 190722-15:16:51,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/gen_ref". 190722-15:16:51,362 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:16:51,566 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_split". 190722-15:16:51,570 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/validate/sub-1468_ses-1_task-Memorya_bold_valid.nii.gz -t 190722-15:16:52,700 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.gen_ref". 190722-15:16:53,919 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/gen_ref". 190722-15:16:53,922 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:16:55,93 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.gen_ref". 190722-15:16:55,561 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_hmc_wf/mcflirt". 190722-15:16:55,631 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/validate/sub-1468_ses-1_task-Memorya_bold_valid.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_hmc_wf/mcflirt/sub-1468_ses-1_task-Memorya_bold_valid_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:17:04,599 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_split". 190722-15:17:05,919 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_hmc_wf/mcflirt". 190722-15:17:05,924 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-Memory_bold.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_hmc_wf/mcflirt/sub-1468_ses-2_task-Memory_bold_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:17:07,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_split". 190722-15:17:09,930 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_split". 190722-15:17:09,934 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-rest_bold.nii.gz -t 190722-15:17:13,837 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.validate". 190722-15:17:15,585 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_split". 190722-15:17:15,590 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/validate/sub-1468_ses-1_task-rest_bold_valid.nii.gz -t 190722-15:17:39,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_hmc_wf.mcflirt". 190722-15:17:39,597 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_hmc_wf/normalize_motion". 190722-15:17:39,600 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:17:39,607 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_hmc_wf.normalize_motion". 190722-15:17:41,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/fdisp". 190722-15:17:41,953 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:17:41,960 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.fdisp". 190722-15:17:43,373 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.validate". 190722-15:17:43,953 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/gen_ref". 190722-15:17:43,956 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:17:45,598 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_split". 190722-15:17:45,604 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/validate/sub-1468_ses-1_task-Memory_bold_valid.nii.gz -t 190722-15:17:46,481 nipype.interface INFO: stderr 2019-07-22T15:17:46.480918:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-15:17:46,481 nipype.interface INFO: stderr 2019-07-22T15:17:46.480918:++ Authored by: RW Cox 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489218:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489218: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489218: or viewing/combining it with volumes of differing obliquity, 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489218: you should consider running: 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489218: 3dWarp -deoblique 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489218: on this and other oblique datasets in the same session. 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489218: See 3dWarp -help for details. 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489218:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/gen_ref/slice.nii.gz is 19.600004 degrees from plumb. 190722-15:17:46,489 nipype.interface INFO: stderr 2019-07-22T15:17:46.489691:++ Coarse del was 10, replaced with 6 190722-15:17:46,497 nipype.interface INFO: stderr 2019-07-22T15:17:46.497416:++ Max displacement in automask = 0.27 (mm) at sub-brick 13 190722-15:17:46,497 nipype.interface INFO: stderr 2019-07-22T15:17:46.497416:++ Max delta displ in automask = 0.26 (mm) at sub-brick 9 190722-15:17:47,203 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_hmc_wf.mcflirt". 190722-15:17:47,954 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/gen_ref". 190722-15:17:47,957 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:17:49,539 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.gen_ref". 190722-15:17:50,120 nipype.interface INFO: stderr 2019-07-22T15:17:50.120326:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-15:17:50,120 nipype.interface INFO: stderr 2019-07-22T15:17:50.120789:++ Authored by: RW Cox 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133129:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133129: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133129: or viewing/combining it with volumes of differing obliquity, 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133129: you should consider running: 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133129: 3dWarp -deoblique 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133129: on this and other oblique datasets in the same session. 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133129: See 3dWarp -help for details. 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133692:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/gen_ref/slice.nii.gz is 19.600004 degrees from plumb. 190722-15:17:50,133 nipype.interface INFO: stderr 2019-07-22T15:17:50.133831:++ Coarse del was 10, replaced with 6 190722-15:17:51,607 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_hmc_wf/normalize_motion". 190722-15:17:51,610 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:17:51,617 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_hmc_wf.normalize_motion". 190722-15:17:53,972 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/fdisp". 190722-15:17:53,977 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:17:53,984 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.fdisp". 190722-15:17:55,610 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_hmc_wf/mcflirt". 190722-15:17:55,614 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-Memorya_bold.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_hmc_wf/mcflirt/sub-1468_ses-2_task-Memorya_bold_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:18:22,261 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_split". 190722-15:18:24,345 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/gen_ref". 190722-15:18:24,348 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:18:26,29 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.gen_ref". 190722-15:18:27,616 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_hmc_wf/mcflirt". 190722-15:18:27,621 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/func/sub-1468_ses-2_task-rest_bold.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_hmc_wf/mcflirt/sub-1468_ses-2_task-rest_bold_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:18:31,657 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_split". 190722-15:18:33,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/validate". 190722-15:18:33,956 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:18:42,491 nipype.interface INFO: stderr 2019-07-22T15:18:42.491048:++ Max displacement in automask = 0.93 (mm) at sub-brick 13 190722-15:18:42,491 nipype.interface INFO: stderr 2019-07-22T15:18:42.491048:++ Max delta displ in automask = 0.46 (mm) at sub-brick 14 190722-15:18:44,971 nipype.interface INFO: stderr 2019-07-22T15:18:44.971327:++ Max displacement in automask = 0.24 (mm) at sub-brick 19 190722-15:18:44,971 nipype.interface INFO: stderr 2019-07-22T15:18:44.971327:++ Max delta displ in automask = 0.21 (mm) at sub-brick 18 190722-15:18:45,601 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.gen_ref". 190722-15:18:47,630 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_hmc_wf/mcflirt". 190722-15:18:47,636 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/validate/sub-1468_ses-1_task-rest_bold_valid.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_hmc_wf/mcflirt/sub-1468_ses-1_task-rest_bold_valid_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:18:47,911 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.gen_ref". 190722-15:18:49,635 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_hmc_wf/mcflirt". 190722-15:18:49,642 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/validate/sub-1468_ses-1_task-Memory_bold_valid.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_hmc_wf/mcflirt/sub-1468_ses-1_task-Memory_bold_valid_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:18:53,920 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.validate". 190722-15:18:55,654 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_split". 190722-15:18:55,659 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/validate/sub-1468_ses-1_task-INF_bold_valid.nii.gz -t 190722-15:19:17,788 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_split". 190722-15:19:20,3 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/gen_ref". 190722-15:19:20,6 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:19:21,406 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.gen_ref". 190722-15:19:23,677 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_hmc_wf/mcflirt". 190722-15:19:23,682 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/validate/sub-1468_ses-1_task-INF_bold_valid.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_hmc_wf/mcflirt/sub-1468_ses-1_task-INF_bold_valid_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:19:36,18 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.validate". 190722-15:19:38,678 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_split". 190722-15:19:38,683 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/validate/sub-1468_ses-4_task-Memory_bold_valid.nii.gz -t 190722-15:20:27,835 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_split". 190722-15:20:30,66 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/gen_ref". 190722-15:20:30,70 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:20:32,560 nipype.interface INFO: stderr 2019-07-22T15:20:32.560022:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-15:20:32,560 nipype.interface INFO: stderr 2019-07-22T15:20:32.560022:++ Authored by: RW Cox 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561088:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561088: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561088: or viewing/combining it with volumes of differing obliquity, 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561088: you should consider running: 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561088: 3dWarp -deoblique 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561088: on this and other oblique datasets in the same session. 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561088: See 3dWarp -help for details. 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561088:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/gen_ref/slice.nii.gz is 10.499999 degrees from plumb. 190722-15:20:32,561 nipype.interface INFO: stderr 2019-07-22T15:20:32.561549:++ Coarse del was 10, replaced with 6 190722-15:21:27,611 nipype.interface INFO: stderr 2019-07-22T15:21:27.611349:++ Max displacement in automask = 0.45 (mm) at sub-brick 18 190722-15:21:27,611 nipype.interface INFO: stderr 2019-07-22T15:21:27.611349:++ Max delta displ in automask = 0.34 (mm) at sub-brick 3 190722-15:21:30,456 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.gen_ref". 190722-15:21:31,783 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_hmc_wf/mcflirt". 190722-15:21:31,788 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/validate/sub-1468_ses-4_task-Memory_bold_valid.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_hmc_wf/mcflirt/sub-1468_ses-4_task-Memory_bold_valid_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:21:33,173 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_hmc_wf.mcflirt". 190722-15:21:33,795 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_hmc_wf/normalize_motion". 190722-15:21:33,799 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:21:33,813 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_hmc_wf.normalize_motion". 190722-15:21:36,133 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/fdisp". 190722-15:21:36,137 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:21:36,149 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.fdisp". 190722-15:21:38,196 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/func_derivatives_wf/raw_sources". 190722-15:21:38,200 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:21:38,204 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.func_derivatives_wf.raw_sources". 190722-15:21:39,796 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/validate". 190722-15:21:39,801 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:21:41,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.validate". 190722-15:21:41,793 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_split". 190722-15:21:41,797 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/validate/sub-1468_ses-4_task-Memorya_bold_valid.nii.gz -t 190722-15:21:44,637 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_split". 190722-15:21:46,140 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/gen_ref". 190722-15:21:46,145 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:21:46,723 nipype.interface INFO: stderr 2019-07-22T15:21:46.723517:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-15:21:46,723 nipype.interface INFO: stderr 2019-07-22T15:21:46.723517:++ Authored by: RW Cox 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724286:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724286: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/validate/sub-1468_ses-4_task-Memorya_bold_valid.nii.gz, 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724286: or viewing/combining it with volumes of differing obliquity, 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724286: you should consider running: 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724286: 3dWarp -deoblique 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724286: on this and other oblique datasets in the same session. 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724286: See 3dWarp -help for details. 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724673:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/validate/sub-1468_ses-4_task-Memorya_bold_valid.nii.gz is 10.499999 degrees from plumb. 190722-15:21:46,724 nipype.interface INFO: stderr 2019-07-22T15:21:46.724673:++ Coarse del was 10, replaced with 6 190722-15:22:08,347 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_hmc_wf.mcflirt". 190722-15:22:09,826 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_hmc_wf/normalize_motion". 190722-15:22:09,829 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:22:09,844 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_hmc_wf.normalize_motion". 190722-15:22:12,169 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/fdisp". 190722-15:22:12,174 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:22:12,186 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.fdisp". 190722-15:22:13,823 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/func_derivatives_wf/raw_sources". 190722-15:22:13,828 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:22:13,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.func_derivatives_wf.raw_sources". 190722-15:22:15,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/validate". 190722-15:22:15,833 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:22:22,815 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.validate". 190722-15:22:23,829 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_split". 190722-15:22:23,834 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/validate/sub-1468_ses-4_task-Memoryb_bold_valid.nii.gz -t 190722-15:22:25,198 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_split". 190722-15:22:26,167 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/gen_ref". 190722-15:22:26,170 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:22:28,538 nipype.interface INFO: stderr 2019-07-22T15:22:28.538088:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-15:22:28,538 nipype.interface INFO: stderr 2019-07-22T15:22:28.538088:++ Authored by: RW Cox 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021: or viewing/combining it with volumes of differing obliquity, 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021: you should consider running: 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021: 3dWarp -deoblique 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021: on this and other oblique datasets in the same session. 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021: See 3dWarp -help for details. 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/gen_ref/slice.nii.gz is 10.499999 degrees from plumb. 190722-15:22:28,539 nipype.interface INFO: stderr 2019-07-22T15:22:28.539021:++ Coarse del was 10, replaced with 6 190722-15:22:41,48 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_split". 190722-15:22:41,853 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.func_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/func_derivatives_wf/raw_sources". 190722-15:22:41,857 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:22:41,862 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.func_derivatives_wf.raw_sources". 190722-15:22:42,93 nipype.interface INFO: stderr 2019-07-22T15:22:42.093276:++ Max displacement in automask = 1.24 (mm) at sub-brick 17 190722-15:22:42,93 nipype.interface INFO: stderr 2019-07-22T15:22:42.093276:++ Max delta displ in automask = 0.97 (mm) at sub-brick 17 190722-15:22:43,850 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/validate". 190722-15:22:43,855 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-15:22:45,377 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.gen_ref". 190722-15:22:45,853 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_hmc_wf/mcflirt". 190722-15:22:45,859 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/validate/sub-1468_ses-4_task-Memorya_bold_valid.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_hmc_wf/mcflirt/sub-1468_ses-4_task-Memorya_bold_valid_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:22:53,528 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_hmc_wf.mcflirt". 190722-15:22:55,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_hmc_wf/normalize_motion". 190722-15:22:55,873 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:22:55,880 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_hmc_wf.normalize_motion". 190722-15:22:58,204 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/fdisp". 190722-15:22:58,208 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:22:58,214 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.fdisp". 190722-15:23:00,344 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl". 190722-15:23:00,351 nipype.workflow INFO: [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1 190722-15:23:08,115 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl". 190722-15:23:09,867 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl". 190722-15:23:09,871 nipype.workflow INFO: [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge") 190722-15:23:09,874 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl". 190722-15:23:11,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl". 190722-15:23:11,878 nipype.workflow INFO: [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1 190722-15:23:13,642 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl". 190722-15:23:13,791 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.validate". 190722-15:23:15,925 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_split" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_split". 190722-15:23:15,930 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/validate/sub-1468_ses-4_task-rest_bold_valid.nii.gz -t 190722-15:23:16,387 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/gen_ref". 190722-15:23:16,390 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-15:23:18,569 nipype.interface INFO: stderr 2019-07-22T15:23:18.569513:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-15:23:18,569 nipype.interface INFO: stderr 2019-07-22T15:23:18.569513:++ Authored by: RW Cox 190722-15:23:18,570 nipype.interface INFO: stderr 2019-07-22T15:23:18.570644:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-15:23:18,570 nipype.interface INFO: stderr 2019-07-22T15:23:18.570644: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-15:23:18,570 nipype.interface INFO: stderr 2019-07-22T15:23:18.570644: or viewing/combining it with volumes of differing obliquity, 190722-15:23:18,570 nipype.interface INFO: stderr 2019-07-22T15:23:18.570644: you should consider running: 190722-15:23:18,570 nipype.interface INFO: stderr 2019-07-22T15:23:18.570644: 3dWarp -deoblique 190722-15:23:18,570 nipype.interface INFO: stderr 2019-07-22T15:23:18.570644: on this and other oblique datasets in the same session. 190722-15:23:18,570 nipype.interface INFO: stderr 2019-07-22T15:23:18.570644: See 3dWarp -help for details. 190722-15:23:18,571 nipype.interface INFO: stderr 2019-07-22T15:23:18.570644:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/gen_ref/slice.nii.gz is 10.499999 degrees from plumb. 190722-15:23:18,571 nipype.interface INFO: stderr 2019-07-22T15:23:18.571072:++ Coarse del was 10, replaced with 6 190722-15:23:25,193 nipype.interface INFO: stderr 2019-07-22T15:23:25.193387:++ Max displacement in automask = 0.36 (mm) at sub-brick 5 190722-15:23:25,193 nipype.interface INFO: stderr 2019-07-22T15:23:25.193387:++ Max delta displ in automask = 0.36 (mm) at sub-brick 5 190722-15:23:28,75 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.gen_ref". 190722-15:23:30,37 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_hmc_wf/mcflirt". 190722-15:23:30,41 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/validate/sub-1468_ses-4_task-Memoryb_bold_valid.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_hmc_wf/mcflirt/sub-1468_ses-4_task-Memoryb_bold_valid_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:24:02,624 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_hmc_wf.mcflirt". 190722-15:24:03,923 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_hmc_wf/normalize_motion". 190722-15:24:03,927 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:24:03,951 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_hmc_wf.normalize_motion". 190722-15:24:06,268 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/fdisp". 190722-15:24:06,293 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:24:06,312 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.fdisp". 190722-15:24:06,987 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_split". 190722-15:24:08,908 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.bidssrc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/bidssrc". 190722-15:24:08,911 nipype.workflow INFO: [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber") 190722-15:24:08,911 nipype.interface WARNING: No "t2w" images found for sub- 190722-15:24:08,911 nipype.interface WARNING: No "flair" images found for sub- 190722-15:24:08,911 nipype.interface WARNING: No "fmap" images found for sub- 190722-15:24:08,911 nipype.interface WARNING: No "sbref" images found for sub- 190722-15:24:08,911 nipype.interface WARNING: No "roi" images found for sub- 190722-15:24:08,939 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.bidssrc". 190722-15:24:09,912 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions". 190722-15:24:09,940 nipype.workflow INFO: [Node] Running "t1_template_dimensions" ("niworkflows.interfaces.images.TemplateDimensions") 190722-15:24:10,265 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions". 190722-15:24:10,265 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.bids_info" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/bids_info". 190722-15:24:10,290 nipype.workflow INFO: [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo") 190722-15:24:10,476 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.bids_info". 190722-15:24:12,264 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources". 190722-15:24:12,265 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_derivatives_wf/t1_name". 190722-15:24:12,267 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190722-15:24:12,269 nipype.workflow INFO: [Node] Running "t1_name" ("nipype.interfaces.utility.wrappers.Function") 190722-15:24:12,271 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources". 190722-15:24:12,273 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.t1_name". 190722-15:24:12,813 nipype.interface INFO: stderr 2019-07-22T15:24:12.813081:++ Max displacement in automask = 1.06 (mm) at sub-brick 19 190722-15:24:12,813 nipype.interface INFO: stderr 2019-07-22T15:24:12.813081:++ Max delta displ in automask = 1.04 (mm) at sub-brick 19 190722-15:24:14,228 nipype.workflow INFO: [Node] Setting-up "_t1_conform0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0". 190722-15:24:14,229 nipype.workflow INFO: [Node] Setting-up "_t1_conform1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform1". 190722-15:24:14,230 nipype.workflow INFO: [Node] Running "_t1_conform0" ("niworkflows.interfaces.images.Conform") 190722-15:24:14,231 nipype.workflow INFO: [Node] Running "_t1_conform1" ("niworkflows.interfaces.images.Conform") 190722-15:24:14,272 nipype.workflow INFO: [Node] Finished "_t1_conform1". 190722-15:24:14,275 nipype.workflow INFO: [Node] Finished "_t1_conform0". 190722-15:24:15,180 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_hmc_wf.mcflirt". 190722-15:24:15,784 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.gen_ref". 190722-15:24:15,915 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_hmc_wf/normalize_motion". 190722-15:24:15,917 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:24:15,924 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_hmc_wf.normalize_motion". 190722-15:24:16,232 nipype.workflow INFO: [Node] Setting-up "_t1_conform2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform2". 190722-15:24:16,236 nipype.workflow INFO: [Node] Running "_t1_conform2" ("niworkflows.interfaces.images.Conform") 190722-15:24:16,258 nipype.workflow INFO: [Node] Finished "_t1_conform2". 190722-15:24:18,262 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/fdisp". 190722-15:24:18,265 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_hmc_wf.mcflirt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_hmc_wf/mcflirt". 190722-15:24:18,266 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:24:18,268 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/validate/sub-1468_ses-4_task-rest_bold_valid.nii.gz -out /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_hmc_wf/mcflirt/sub-1468_ses-4_task-rest_bold_valid_mcf.nii.gz -reffile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190722-15:24:18,272 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.fdisp". 190722-15:24:18,611 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_conform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform". 190722-15:24:18,616 nipype.workflow INFO: [Node] Setting-up "_t1_conform0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0". 190722-15:24:18,617 nipype.workflow INFO: [Node] Cached "_t1_conform0" - collecting precomputed outputs 190722-15:24:18,617 nipype.workflow INFO: [Node] "_t1_conform0" found cached. 190722-15:24:18,618 nipype.workflow INFO: [Node] Setting-up "_t1_conform1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform1". 190722-15:24:18,619 nipype.workflow INFO: [Node] Cached "_t1_conform1" - collecting precomputed outputs 190722-15:24:18,619 nipype.workflow INFO: [Node] "_t1_conform1" found cached. 190722-15:24:18,619 nipype.workflow INFO: [Node] Setting-up "_t1_conform2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform2". 190722-15:24:18,620 nipype.workflow INFO: [Node] Cached "_t1_conform2" - collecting precomputed outputs 190722-15:24:18,620 nipype.workflow INFO: [Node] "_t1_conform2" found cached. 190722-15:24:18,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_conform". 190722-15:24:21,920 nipype.workflow INFO: [Node] Setting-up "_n4_correct0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0". 190722-15:24:21,921 nipype.workflow INFO: [Node] Setting-up "_n4_correct1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1". 190722-15:24:21,922 nipype.workflow INFO: [Node] Setting-up "_n4_correct2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2". 190722-15:24:21,924 nipype.workflow INFO: [Node] Running "_n4_correct0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection -d 3 --input-image /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/anat/sub-1468_ses-1_T1w.nii.gz --output sub-1468_ses-1_T1w_corrected.nii.gz 190722-15:24:21,924 nipype.workflow INFO: [Node] Running "_n4_correct1" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection -d 3 --input-image /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/anat/sub-1468_ses-2_T1w.nii.gz --output sub-1468_ses-2_T1w_corrected.nii.gz 190722-15:24:21,925 nipype.workflow INFO: [Node] Running "_n4_correct2" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection -d 3 --input-image /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/anat/sub-1468_ses-4_T1w.nii.gz --output sub-1468_ses-4_T1w_corrected.nii.gz 190722-15:24:33,393 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_split". 190722-15:24:34,170 nipype.workflow INFO: [Node] Setting-up "_t1_conform_xfm0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm0". 190722-15:24:34,177 nipype.workflow INFO: [Node] Running "_t1_conform_xfm0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm0/out.lta --src /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/anat/sub-1468_ses-1_T1w.nii.gz --trg /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-1/anat/sub-1468_ses-1_T1w.nii.gz 190722-15:24:34,410 nipype.workflow INFO: [Node] Finished "_t1_conform_xfm0". 190722-15:24:35,924 nipype.workflow INFO: [Node] Setting-up "_t1_conform_xfm1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm1". 190722-15:24:35,927 nipype.workflow INFO: [Node] Running "_t1_conform_xfm1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm1/out.lta --src /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/anat/sub-1468_ses-2_T1w.nii.gz --trg /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-2/anat/sub-1468_ses-2_T1w.nii.gz 190722-15:24:36,51 nipype.workflow INFO: [Node] Finished "_t1_conform_xfm1". 190722-15:24:37,953 nipype.workflow INFO: [Node] Setting-up "_t1_conform_xfm2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm2". 190722-15:24:37,956 nipype.workflow INFO: [Node] Running "_t1_conform_xfm2" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm2/out.lta --src /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/anat/sub-1468_ses-4_T1w.nii.gz --trg /gpfs/ysm/scratch60/oad4/kpeBIDS/kpe_forFmriPrep/sub-1468/ses-4/anat/sub-1468_ses-4_T1w.nii.gz 190722-15:24:38,78 nipype.workflow INFO: [Node] Finished "_t1_conform_xfm2". 190722-15:24:39,928 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_conform_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm". 190722-15:24:39,933 nipype.workflow INFO: [Node] Setting-up "_t1_conform_xfm0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm0". 190722-15:24:39,934 nipype.workflow INFO: [Node] Cached "_t1_conform_xfm0" - collecting precomputed outputs 190722-15:24:39,934 nipype.workflow INFO: [Node] "_t1_conform_xfm0" found cached. 190722-15:24:39,935 nipype.workflow INFO: [Node] Setting-up "_t1_conform_xfm1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm1". 190722-15:24:39,936 nipype.workflow INFO: [Node] Cached "_t1_conform_xfm1" - collecting precomputed outputs 190722-15:24:39,936 nipype.workflow INFO: [Node] "_t1_conform_xfm1" found cached. 190722-15:24:39,936 nipype.workflow INFO: [Node] Setting-up "_t1_conform_xfm2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm2". 190722-15:24:39,937 nipype.workflow INFO: [Node] Cached "_t1_conform_xfm2" - collecting precomputed outputs 190722-15:24:39,937 nipype.workflow INFO: [Node] "_t1_conform_xfm2" found cached. 190722-15:24:39,940 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_conform_xfm". 190722-15:25:32,612 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_hmc_wf.mcflirt". 190722-15:25:33,984 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_hmc_wf/normalize_motion". 190722-15:25:33,988 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:25:34,13 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_hmc_wf.normalize_motion". 190722-15:25:36,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/fdisp". 190722-15:25:36,336 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:25:36,356 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.fdisp". 190722-15:27:37,776 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_hmc_wf.mcflirt". 190722-15:27:40,88 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_hmc_wf/normalize_motion". 190722-15:27:40,91 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:27:40,105 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_hmc_wf.normalize_motion". 190722-15:27:42,406 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/fdisp". 190722-15:27:42,409 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:27:42,420 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.fdisp". 190722-15:27:54,376 nipype.workflow INFO: [Node] Finished "_n4_correct2". 190722-15:28:21,386 nipype.workflow INFO: [Node] Finished "_n4_correct1". 190722-15:28:21,876 nipype.workflow INFO: [Node] Finished "_n4_correct0". 190722-15:28:24,262 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct". 190722-15:28:24,319 nipype.workflow INFO: [Node] Setting-up "_n4_correct0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0". 190722-15:28:24,320 nipype.workflow INFO: [Node] Cached "_n4_correct0" - collecting precomputed outputs 190722-15:28:24,320 nipype.workflow INFO: [Node] "_n4_correct0" found cached. 190722-15:28:24,321 nipype.workflow INFO: [Node] Setting-up "_n4_correct1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1". 190722-15:28:24,321 nipype.workflow INFO: [Node] Cached "_n4_correct1" - collecting precomputed outputs 190722-15:28:24,322 nipype.workflow INFO: [Node] "_n4_correct1" found cached. 190722-15:28:24,322 nipype.workflow INFO: [Node] Setting-up "_n4_correct2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2". 190722-15:28:24,323 nipype.workflow INFO: [Node] Cached "_n4_correct2" - collecting precomputed outputs 190722-15:28:24,323 nipype.workflow INFO: [Node] "_n4_correct2" found cached. 190722-15:28:24,330 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.n4_correct". 190722-15:28:26,270 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge". 190722-15:28:26,274 nipype.workflow INFO: [Node] Running "t1_merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: mri_robust_template --satit --fixtp --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-1468_ses-1_T1w_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1/sub-1468_ses-2_T1w_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2/sub-1468_ses-4_T1w_corrected.nii.gz --inittp 1 --iscale --noit --template sub-1468_ses-1_T1w_template.nii.gz --subsample 200 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/tp1.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/tp2.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/tp3.lta 190722-15:28:26,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_hmc_wf.mcflirt". 190722-15:28:28,160 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_hmc_wf/normalize_motion". 190722-15:28:28,550 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:28:28,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_hmc_wf.normalize_motion". 190722-15:28:30,940 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/fdisp". 190722-15:28:31,497 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:28:31,683 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.fdisp". 190722-15:30:20,569 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_merge". 190722-15:30:22,344 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-15:30:22,454 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-15:30:27,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-15:30:28,312 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-15:30:28,318 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-15:30:30,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-15:30:32,335 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-15:30:32,339 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_reorient" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_reorient". 190722-15:30:32,340 nipype.workflow INFO: [Node] Setting-up "_concat_affines2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines2". 190722-15:30:32,450 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-15:30:32,453 nipype.workflow INFO: [Node] Running "t1_reorient" ("nipype.interfaces.image.Reorient") 190722-15:30:32,456 nipype.workflow INFO: [Node] Running "_concat_affines2" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -invertout -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm2/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/tp3.lta out_concat.lta 190722-15:30:32,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.t1_reorient". 190722-15:30:32,644 nipype.workflow INFO: [Node] Setting-up "_concat_affines1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines1". 190722-15:30:32,644 nipype.workflow INFO: [Node] Setting-up "_concat_affines0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines0". 190722-15:30:32,647 nipype.workflow INFO: [Node] Running "_concat_affines1" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -invertout -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm1/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/tp2.lta out_concat.lta 190722-15:30:32,649 nipype.workflow INFO: [Node] Running "_concat_affines0" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -invertout -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_conform_xfm/mapflow/_t1_conform_xfm0/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/tp1.lta out_concat.lta 190722-15:30:32,729 nipype.workflow INFO: [Node] Finished "_concat_affines2". 190722-15:30:32,742 nipype.workflow INFO: [Node] Finished "_concat_affines1". 190722-15:30:32,748 nipype.workflow INFO: [Node] Finished "_concat_affines0". 190722-15:30:34,978 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.concat_affines" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines". 190722-15:30:34,982 nipype.workflow INFO: [Node] Setting-up "_concat_affines0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines0". 190722-15:30:34,983 nipype.workflow INFO: [Node] Cached "_concat_affines0" - collecting precomputed outputs 190722-15:30:34,983 nipype.workflow INFO: [Node] "_concat_affines0" found cached. 190722-15:30:34,984 nipype.workflow INFO: [Node] Setting-up "_concat_affines1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines1". 190722-15:30:34,985 nipype.workflow INFO: [Node] Cached "_concat_affines1" - collecting precomputed outputs 190722-15:30:34,985 nipype.workflow INFO: [Node] "_concat_affines1" found cached. 190722-15:30:34,986 nipype.workflow INFO: [Node] Setting-up "_concat_affines2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines2". 190722-15:30:34,986 nipype.workflow INFO: [Node] Cached "_concat_affines2" - collecting precomputed outputs 190722-15:30:34,986 nipype.workflow INFO: [Node] "_concat_affines2" found cached. 190722-15:30:34,989 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.concat_affines". 190722-15:30:36,248 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fov_check". 190722-15:30:36,250 nipype.workflow INFO: [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function") 190722-15:30:36,254 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/truncate_images". 190722-15:30:36,257 nipype.workflow INFO: [Node] Setting-up "_truncate_images0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0". 190722-15:30:36,260 nipype.workflow INFO: [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_maths.nii.gz TruncateImageIntensity /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/sub-1468_ses-1_T1w_template.nii.gz 0.01 0.999 256 190722-15:30:36,479 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/recon_config". 190722-15:30:36,482 nipype.workflow INFO: [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs") 190722-15:30:36,502 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.recon_config". 190722-15:30:36,632 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.fov_check". 190722-15:30:38,242 nipype.workflow INFO: [Node] Setting-up "_lta_to_itk0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk0". 190722-15:30:38,243 nipype.workflow INFO: [Node] Setting-up "_lta_to_itk1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk1". 190722-15:30:38,244 nipype.workflow INFO: [Node] Setting-up "_lta_to_itk2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk2". 190722-15:30:38,245 nipype.workflow INFO: [Node] Running "_lta_to_itk0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines0/out_concat.lta --outitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk0/out.txt 190722-15:30:38,246 nipype.workflow INFO: [Node] Running "_lta_to_itk1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines1/out_concat.lta --outitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk1/out.txt 190722-15:30:38,247 nipype.workflow INFO: [Node] Running "_lta_to_itk2" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/concat_affines/mapflow/_concat_affines2/out_concat.lta --outitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk2/out.txt 190722-15:30:38,331 nipype.workflow INFO: [Node] Finished "_lta_to_itk2". 190722-15:30:38,349 nipype.workflow INFO: [Node] Finished "_lta_to_itk1". 190722-15:30:38,415 nipype.workflow INFO: [Node] Finished "_lta_to_itk0". 190722-15:30:39,70 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-15:30:39,775 nipype.workflow INFO: [Node] Finished "_truncate_images0". 190722-15:30:39,777 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.truncate_images". 190722-15:30:40,240 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-15:30:40,244 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-15:30:40,462 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.lta_to_itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk". 190722-15:30:40,466 nipype.workflow INFO: [Node] Setting-up "_lta_to_itk0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk0". 190722-15:30:40,467 nipype.workflow INFO: [Node] Cached "_lta_to_itk0" - collecting precomputed outputs 190722-15:30:40,467 nipype.workflow INFO: [Node] "_lta_to_itk0" found cached. 190722-15:30:40,467 nipype.workflow INFO: [Node] Setting-up "_lta_to_itk1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk1". 190722-15:30:40,468 nipype.workflow INFO: [Node] Cached "_lta_to_itk1" - collecting precomputed outputs 190722-15:30:40,468 nipype.workflow INFO: [Node] "_lta_to_itk1" found cached. 190722-15:30:40,469 nipype.workflow INFO: [Node] Setting-up "_lta_to_itk2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/lta_to_itk/mapflow/_lta_to_itk2". 190722-15:30:40,470 nipype.workflow INFO: [Node] Cached "_lta_to_itk2" - collecting precomputed outputs 190722-15:30:40,470 nipype.workflow INFO: [Node] "_lta_to_itk2" found cached. 190722-15:30:40,472 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_template_wf.lta_to_itk". 190722-15:30:41,545 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-15:30:42,340 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-15:30:43,228 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_hmc_wf/fsl2itk". 190722-15:30:43,276 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-15:32:05,377 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_hmc_wf.fsl2itk". 190722-15:32:06,331 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-15:32:06,334 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-15:32:14,855 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-15:32:16,318 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-15:32:16,321 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-15:32:17,875 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-15:32:18,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-15:32:18,358 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-15:32:22,480 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-15:32:24,381 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-15:32:24,387 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-15:32:24,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-15:32:26,382 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-15:32:26,386 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-15:32:30,725 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-15:32:32,390 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-15:32:32,393 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-15:32:32,480 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-15:32:34,382 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-15:32:34,385 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-15:32:34,742 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-15:32:36,389 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-15:32:36,395 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-15:32:36,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-15:32:38,390 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-15:32:38,394 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-15:32:38,509 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-15:32:40,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-15:32:40,397 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-15:32:40,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-15:32:42,837 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_transform". 190722-15:32:42,885 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-15:32:45,853 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_hmc_wf.mcflirt". 190722-15:32:46,372 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_hmc_wf.normalize_motion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_hmc_wf/normalize_motion". 190722-15:32:46,376 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190722-15:32:46,429 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_hmc_wf.normalize_motion". 190722-15:47:16,163 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_transform". 190722-15:47:17,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.fdisp" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/fdisp". 190722-15:47:17,151 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190722-15:47:17,201 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.fdisp". 190722-15:47:18,479 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_hmc_wf/fsl2itk". 190722-15:47:18,579 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-15:47:19,408 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/merge". 190722-15:47:19,453 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-15:50:43,969 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_hmc_wf.fsl2itk". 190722-15:50:45,736 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-15:50:45,740 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-15:50:50,354 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-15:50:51,339 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-15:50:51,344 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-15:50:52,843 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-15:50:53,351 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-15:50:53,354 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-15:50:59,769 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-15:51:01,395 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-15:51:01,399 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-15:51:02,490 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-15:51:03,356 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-15:51:03,881 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_hmc_wf/fsl2itk". 190722-15:51:03,888 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-15:51:13,995 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_hmc_wf.fsl2itk". 190722-15:51:15,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-15:51:15,314 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-15:51:23,655 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-15:51:25,369 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-15:51:25,373 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-15:51:26,896 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-15:51:27,289 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-15:51:27,293 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-15:51:31,21 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.merge". 190722-15:51:31,410 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-15:51:35,891 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_transform". 190722-15:51:35,984 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-16:19:04,667 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_transform". 190722-16:19:06,66 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-16:19:06,70 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:19:06,73 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-16:19:06,74 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:19:06,280 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:19:06,329 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/merge". 190722-16:19:06,429 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-16:19:07,953 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:19:07,957 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:19:12,537 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:19:13,948 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:19:13,953 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:19:14,67 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:19:15,835 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:19:15,840 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:19:16,192 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:19:17,834 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:19:17,837 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:19:17,879 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:19:19,871 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:19:19,875 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:19:20,8 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:19:21,856 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:19:21,860 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:19:22,46 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:20:19,298 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-16:20:19,888 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-16:20:19,892 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-16:20:22,800 nipype.interface INFO: stderr 2019-07-22T16:20:22.799846:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-16:20:22,800 nipype.interface INFO: stderr 2019-07-22T16:20:22.799846:++ Authored by: RW Cox 190722-16:20:22,800 nipype.interface INFO: stderr 2019-07-22T16:20:22.800761:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190722-16:20:22,800 nipype.interface INFO: stderr 2019-07-22T16:20:22.800761: Warnings of this type will be muted for this session. 190722-16:20:22,800 nipype.interface INFO: stderr 2019-07-22T16:20:22.800761: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190722-16:20:22,800 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-16:20:22,801 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-16:20:22,801 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954: or viewing/combining it with volumes of differing obliquity, 190722-16:20:22,801 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954: you should consider running: 190722-16:20:22,801 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954: 3dWarp -deoblique 190722-16:20:22,801 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954: on this and other oblique datasets in the same session. 190722-16:20:22,801 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954: See 3dWarp -help for details. 190722-16:20:22,801 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 19.600004 degrees from plumb. 190722-16:20:22,801 nipype.interface INFO: stderr 2019-07-22T16:20:22.800954:++ Coarse del was 10, replaced with 6 190722-16:21:13,347 nipype.interface INFO: stderr 2019-07-22T16:21:13.347081:++ Max displacement in automask = 0.15 (mm) at sub-brick 11 190722-16:21:13,347 nipype.interface INFO: stderr 2019-07-22T16:21:13.347081:++ Max delta displ in automask = 0.20 (mm) at sub-brick 11 190722-16:21:16,716 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-16:21:17,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:21:17,941 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:21:22,662 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:21:23,964 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:21:23,969 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:21:25,633 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:21:27,944 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:21:27,949 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:21:34,442 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:21:35,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:21:35,957 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:21:37,95 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:21:37,976 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-16:21:38,391 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_transform". 190722-16:21:38,398 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-16:23:09,435 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_transform". 190722-16:23:10,61 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:23:10,89 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:23:10,110 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/merge". 190722-16:23:10,116 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-16:23:18,728 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:23:20,45 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:23:20,87 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:23:21,655 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:23:22,51 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:23:22,57 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:23:26,433 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:23:28,79 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:23:28,84 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:23:28,237 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:23:30,57 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:23:30,74 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:23:31,90 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.merge". 190722-16:23:32,58 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-16:23:32,61 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-16:23:34,647 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:23:36,62 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:23:36,64 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:23:36,144 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:23:38,62 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:23:38,66 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:23:38,378 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:23:40,65 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:23:40,67 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:23:40,101 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:23:40,455 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-16:23:42,68 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:23:42,70 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-16:23:42,72 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:23:42,73 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-16:23:42,184 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:23:43,858 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-16:23:44,84 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/dvars". 190722-16:23:44,86 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:23:44,86 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-16:23:44,89 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:23:44,245 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:25:12,463 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.dvars". 190722-16:25:14,782 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:25:14,787 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:25:19,527 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:25:20,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:25:20,154 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:25:21,732 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:25:22,149 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:25:22,154 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:25:28,896 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:25:30,179 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:25:30,228 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:25:31,337 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:25:32,492 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-16:25:32,848 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:25:32,852 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:25:37,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:25:38,184 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:25:38,188 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:25:46,864 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:25:48,168 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:25:48,174 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:25:49,756 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:25:50,195 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:25:50,200 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:25:54,541 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:25:56,200 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:25:56,204 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:25:56,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:25:58,202 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:25:58,208 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:26:02,667 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:26:04,186 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:26:04,190 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:26:04,270 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:26:06,210 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:26:06,216 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:26:06,548 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:26:08,211 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:26:08,213 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:26:08,247 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:26:10,213 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:26:10,216 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:26:10,331 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:26:12,216 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/dvars". 190722-16:26:12,218 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:26:12,219 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-16:26:12,222 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:26:12,381 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:26:57,260 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.dvars". 190722-16:26:58,877 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:26:58,883 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:27:00,240 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:27:02,259 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:27:02,263 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:27:08,814 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:27:10,280 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:27:10,284 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:27:11,385 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:27:12,286 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-16:27:12,925 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_hmc_wf/fsl2itk". 190722-16:27:12,950 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-16:27:55,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_hmc_wf.fsl2itk". 190722-16:27:56,312 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:27:56,317 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:28:04,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:28:06,321 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:28:06,325 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:28:07,875 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:28:08,313 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:28:08,317 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:28:12,467 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:28:14,301 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:28:14,305 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:28:14,461 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:28:16,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:28:16,331 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:28:20,633 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:28:22,337 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:28:22,340 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:28:22,418 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:28:24,333 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:28:24,337 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:28:24,581 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.merge". 190722-16:28:24,653 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:28:26,377 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-16:28:26,379 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:28:26,381 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:28:26,381 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-16:28:26,415 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:28:28,339 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:28:28,342 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:28:28,454 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:28:30,340 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:28:30,343 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:28:30,498 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:28:32,629 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_transform". 190722-16:28:32,652 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-16:31:03,356 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-16:31:04,640 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-16:31:04,645 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-16:31:06,146 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-16:35:12,118 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_transform". 190722-16:35:12,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:35:12,878 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:35:12,944 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/merge". 190722-16:35:12,967 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-16:35:17,512 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:35:18,644 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:35:18,649 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:35:19,965 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:35:20,639 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:35:20,645 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:35:27,340 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:35:28,647 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:35:28,650 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:35:29,735 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:35:30,686 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-16:35:31,25 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:35:31,29 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:35:35,493 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:35:36,653 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:35:36,657 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:35:45,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:35:46,661 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:35:46,668 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:35:48,255 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:35:48,663 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:35:48,667 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:35:52,904 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:35:54,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:35:54,671 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:35:54,833 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:35:56,669 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:35:56,675 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:36:00,977 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:36:02,675 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:36:02,682 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:36:02,762 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:36:04,698 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:36:04,704 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:36:05,35 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:36:06,678 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:36:06,680 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:36:06,714 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:36:08,680 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:36:08,684 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:36:08,800 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:36:10,731 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/dvars". 190722-16:36:10,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:36:10,735 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-16:36:10,737 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:36:10,890 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:37:01,636 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.merge". 190722-16:37:02,727 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-16:37:02,730 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-16:37:38,85 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-16:37:38,758 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-16:37:38,761 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-16:37:41,500 nipype.interface INFO: stderr 2019-07-22T16:37:41.500788:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-16:37:41,501 nipype.interface INFO: stderr 2019-07-22T16:37:41.500788:++ Authored by: RW Cox 190722-16:37:41,508 nipype.interface INFO: stderr 2019-07-22T16:37:41.508689:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190722-16:37:41,508 nipype.interface INFO: stderr 2019-07-22T16:37:41.508689: Warnings of this type will be muted for this session. 190722-16:37:41,508 nipype.interface INFO: stderr 2019-07-22T16:37:41.508689: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509023:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509023: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509023: or viewing/combining it with volumes of differing obliquity, 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509023: you should consider running: 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509023: 3dWarp -deoblique 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509023: on this and other oblique datasets in the same session. 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509023: See 3dWarp -help for details. 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509023:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 19.600004 degrees from plumb. 190722-16:37:41,509 nipype.interface INFO: stderr 2019-07-22T16:37:41.509497:++ Coarse del was 10, replaced with 6 190722-16:38:30,584 nipype.interface INFO: stderr 2019-07-22T16:38:30.584379:++ Max displacement in automask = 0.22 (mm) at sub-brick 2 190722-16:38:30,584 nipype.interface INFO: stderr 2019-07-22T16:38:30.584379:++ Max delta displ in automask = 0.22 (mm) at sub-brick 2 190722-16:38:33,941 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-16:38:34,806 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:38:34,811 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:38:39,171 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.dvars". 190722-16:38:40,878 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:38:42,815 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:38:42,820 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:38:45,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:38:46,815 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:38:46,820 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:38:46,821 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:38:46,827 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:38:49,295 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:38:50,816 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:38:50,821 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:38:53,658 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:38:54,801 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:38:54,805 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:38:55,947 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:38:56,830 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-16:38:57,224 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_hmc_wf/fsl2itk". 190722-16:38:57,232 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-16:38:57,447 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:38:58,865 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:38:58,869 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:39:06,700 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_hmc_wf.fsl2itk". 190722-16:39:07,845 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:39:09,57 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:39:09,59 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:39:09,61 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:39:09,62 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:39:10,168 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:39:10,582 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:39:10,851 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-16:39:11,239 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_transform". 190722-16:39:11,247 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-16:39:12,907 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:39:12,910 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:39:17,135 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:39:18,979 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:39:18,982 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:39:19,236 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:39:20,818 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:39:20,824 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:39:25,301 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:39:26,925 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:39:26,929 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:39:27,18 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:39:28,851 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:39:28,855 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:39:29,163 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:39:30,863 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:39:30,865 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:39:30,900 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:39:32,896 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:39:32,900 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:39:33,10 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:39:34,924 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/dvars". 190722-16:39:34,927 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-16:40:40,957 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.dvars". 190722-16:40:43,592 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:40:43,596 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:40:44,89 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:40:44,400 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_transform". 190722-16:40:44,916 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:40:44,920 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:40:44,962 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/merge". 190722-16:40:44,969 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-16:40:53,94 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:40:54,921 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:40:54,925 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:40:56,415 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:40:56,912 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:40:56,915 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:41:03,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:41:04,931 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:41:04,934 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:41:05,80 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:41:05,508 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.merge". 190722-16:41:06,982 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:41:06,985 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-16:41:06,987 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:41:07,8 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-16:41:11,416 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:41:12,939 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:41:12,941 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:41:13,21 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:41:14,938 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:41:14,943 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:41:15,232 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-16:41:15,274 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:41:16,956 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:41:16,958 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-16:41:16,960 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:41:16,960 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-16:41:16,993 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:41:18,312 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-16:41:18,992 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:41:18,996 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:41:18,996 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:41:19,0 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:41:19,115 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:41:20,944 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:41:20,947 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:41:21,105 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:41:23,442 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:41:24,997 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:41:25,5 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:41:27,97 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:41:28,964 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:41:28,969 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:41:28,973 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:41:28,977 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:41:33,667 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:41:35,77 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:41:35,82 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:41:35,390 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:41:37,94 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:41:37,97 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:41:37,687 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:41:38,192 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:41:39,207 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-16:41:39,801 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:41:39,805 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:41:40,325 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_hmc_wf/fsl2itk". 190722-16:41:40,374 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-16:41:46,799 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:41:49,140 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:41:49,144 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:41:58,113 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:41:58,955 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:41:58,959 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:42:00,624 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:42:00,974 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:42:00,978 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:42:05,435 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:42:07,2 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:42:07,126 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:42:07,281 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:42:09,182 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:42:09,186 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:42:13,845 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:42:15,182 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:42:15,185 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:42:15,273 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:42:17,151 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:42:17,155 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:42:17,477 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:42:18,971 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:42:18,975 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:42:19,11 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:42:20,992 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:42:20,996 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:42:21,119 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:42:22,979 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/dvars". 190722-16:42:22,982 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-16:43:08,169 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.dvars". 190722-16:43:10,337 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:43:10,341 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:43:10,509 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:43:11,43 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:43:11,48 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:43:12,206 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:43:12,719 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_hmc_wf.fsl2itk". 190722-16:43:15,79 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:43:15,83 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:43:15,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-16:43:15,403 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-16:43:19,855 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-16:43:21,632 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_transform". 190722-16:43:21,682 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-16:43:24,77 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:43:25,586 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:43:25,590 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:43:27,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:43:29,25 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:43:29,29 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:43:33,417 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:43:35,57 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:43:35,59 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:43:35,301 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:43:37,47 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:43:37,51 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:43:41,484 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:43:43,36 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:43:43,39 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:43:43,344 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:43:45,42 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:43:45,46 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:43:45,504 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:43:47,64 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:43:47,67 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:43:47,102 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:43:49,42 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:43:49,45 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:43:49,217 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:43:51,54 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:43:51,58 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:43:51,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:56:35,722 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_transform". 190722-16:56:37,773 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-16:56:37,780 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-16:56:37,806 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/merge". 190722-16:56:37,852 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-16:56:40,423 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-16:56:41,661 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-16:56:41,665 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-16:56:48,457 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-16:56:49,682 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-16:56:49,686 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-16:56:50,800 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-16:56:52,365 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_hmc_wf/fsl2itk". 190722-16:56:52,388 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-16:57:36,867 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_hmc_wf.fsl2itk". 190722-16:57:37,720 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-16:57:37,724 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-16:57:46,343 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-16:57:47,850 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-16:57:47,853 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-16:57:49,407 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-16:57:51,831 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-16:57:51,834 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-16:57:56,240 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-16:57:57,692 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-16:57:57,696 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-16:57:57,861 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-16:57:59,728 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-16:57:59,733 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-16:58:04,327 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-16:58:05,739 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-16:58:05,741 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:58:05,822 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-16:58:07,749 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-16:58:07,752 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-16:58:08,69 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-16:58:09,749 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-16:58:09,752 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-16:58:09,783 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-16:58:11,701 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-16:58:11,705 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-16:58:11,813 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-16:58:13,755 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-16:58:13,761 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-16:58:13,924 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-16:58:15,967 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_transform". 190722-16:58:15,990 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-17:00:39,516 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.merge". 190722-17:00:39,859 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-17:00:39,863 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-17:01:59,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-17:01:59,928 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-17:01:59,931 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-17:02:03,34 nipype.interface INFO: stderr 2019-07-22T17:02:03.034398:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-17:02:03,35 nipype.interface INFO: stderr 2019-07-22T17:02:03.034398:++ Authored by: RW Cox 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287: Warnings of this type will be muted for this session. 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287: or viewing/combining it with volumes of differing obliquity, 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287: you should consider running: 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287: 3dWarp -deoblique 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287: on this and other oblique datasets in the same session. 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287: See 3dWarp -help for details. 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 13.199993 degrees from plumb. 190722-17:02:03,47 nipype.interface INFO: stderr 2019-07-22T17:02:03.047287:++ Coarse del was 10, replaced with 6 190722-17:02:57,763 nipype.interface INFO: stderr 2019-07-22T17:02:57.763292:++ Max displacement in automask = 0.21 (mm) at sub-brick 18 190722-17:02:57,763 nipype.interface INFO: stderr 2019-07-22T17:02:57.763292:++ Max delta displ in automask = 0.19 (mm) at sub-brick 16 190722-17:03:01,310 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-17:05:04,37 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_transform". 190722-17:05:06,126 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:05:06,131 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:05:06,174 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/merge". 190722-17:05:06,224 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-17:05:10,719 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:05:12,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:05:12,140 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:05:14,661 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:05:16,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:05:16,137 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:05:22,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:05:24,236 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:05:24,240 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:05:25,420 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:05:26,189 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:05:26,539 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:05:26,543 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:05:31,56 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:05:32,154 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:05:32,158 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:05:40,791 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:05:42,171 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:05:42,174 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:05:43,733 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:05:44,115 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:05:44,122 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:05:48,352 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:05:50,243 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:05:50,248 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:05:50,400 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:05:52,132 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:05:52,135 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:05:56,468 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:05:58,124 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:05:58,127 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:05:58,203 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:06:00,255 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:06:00,260 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:06:00,598 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:06:02,138 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:06:02,140 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:06:02,172 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:06:04,285 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:06:04,290 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:06:04,436 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:06:06,269 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/dvars". 190722-17:06:06,271 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:06:06,272 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-17:06:06,276 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:06:06,424 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:06:58,786 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.merge". 190722-17:07:00,204 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-17:07:00,206 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-17:07:35,167 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.dvars". 190722-17:07:35,397 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-17:07:36,978 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-17:07:36,980 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-17:07:36,983 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:07:36,990 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:07:38,546 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-17:07:40,733 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:07:42,357 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:07:42,360 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:07:42,361 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:07:42,364 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:07:46,967 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:07:48,343 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:07:48,348 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:07:48,959 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:07:49,676 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:07:50,449 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:07:50,449 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:07:50,455 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:07:50,456 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:07:51,533 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:07:53,494 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_hmc_wf/fsl2itk". 190722-17:07:53,543 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-17:07:57,313 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:07:58,432 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:07:58,436 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:07:59,608 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:08:00,444 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:08:01,6 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:08:01,10 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:08:09,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:08:12,380 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:08:12,384 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:08:21,347 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:08:22,310 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:08:22,313 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:08:23,979 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:08:26,407 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:08:26,411 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:08:30,896 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:08:32,485 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:08:32,488 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:08:32,661 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:08:34,438 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:08:34,442 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:08:39,129 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:08:40,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:08:40,357 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:08:40,444 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:08:42,374 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:08:42,378 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:08:42,717 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:08:44,367 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:08:44,372 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:08:44,409 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:08:46,307 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:08:46,311 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:08:46,438 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:08:48,359 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/dvars". 190722-17:08:48,362 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-17:09:28,299 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_hmc_wf.fsl2itk". 190722-17:09:30,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:09:30,350 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:09:30,352 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:09:30,353 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:09:30,501 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:09:31,913 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:09:32,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:09:32,380 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:09:36,523 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:09:38,333 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:09:38,336 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:09:38,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:09:40,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:09:40,358 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:09:44,713 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:09:46,387 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:09:46,391 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:09:46,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:09:48,365 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:09:48,376 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:09:48,856 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:09:50,351 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:09:50,353 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:09:50,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:09:52,330 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:09:52,333 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:09:52,468 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:09:53,784 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.dvars". 190722-17:09:55,464 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:09:55,467 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:09:55,631 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:09:56,9 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_transform". 190722-17:09:56,55 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-17:23:54,236 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_transform". 190722-17:23:54,939 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:23:54,945 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:23:55,188 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/merge". 190722-17:23:55,235 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-17:23:59,674 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:24:00,804 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:24:00,809 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:24:05,711 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:24:06,824 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:24:06,829 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:24:13,650 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:24:14,832 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:24:14,838 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:24:15,973 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:24:16,852 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:24:17,200 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_hmc_wf/fsl2itk". 190722-17:24:17,204 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-17:24:19,1 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_hmc_wf.fsl2itk". 190722-17:24:20,853 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:24:20,859 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:24:29,516 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:24:30,843 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:24:30,847 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:24:32,404 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:24:32,833 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:24:32,837 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:24:37,115 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:24:38,866 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:24:38,870 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:24:39,27 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:24:40,855 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:24:40,860 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:24:45,418 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:24:46,842 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:24:46,844 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:24:46,920 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:24:49,86 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:24:49,90 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:24:49,443 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:24:51,85 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:24:51,88 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:24:51,127 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:24:53,81 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:24:53,85 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:24:53,226 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:24:55,89 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:24:55,96 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:24:55,270 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:24:57,98 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_transform". 190722-17:24:57,102 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-17:25:16,581 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_transform". 190722-17:25:19,115 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/merge". 190722-17:25:19,119 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-17:25:22,900 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.merge". 190722-17:25:24,891 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-17:25:24,893 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-17:25:26,473 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-17:25:26,890 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-17:25:26,893 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-17:25:27,487 nipype.interface INFO: stderr 2019-07-22T17:25:27.487124:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-17:25:27,487 nipype.interface INFO: stderr 2019-07-22T17:25:27.487124:++ Authored by: RW Cox 190722-17:25:27,487 nipype.interface INFO: stderr 2019-07-22T17:25:27.487563:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/validate/vol0000_xform-00000_merged_valid.nii.gz to FLOAT32 190722-17:25:27,487 nipype.interface INFO: stderr 2019-07-22T17:25:27.487563: Warnings of this type will be muted for this session. 190722-17:25:27,487 nipype.interface INFO: stderr 2019-07-22T17:25:27.487563: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190722-17:25:27,487 nipype.interface INFO: stderr 2019-07-22T17:25:27.487888:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-17:25:27,487 nipype.interface INFO: stderr 2019-07-22T17:25:27.487888: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/validate/vol0000_xform-00000_merged_valid.nii.gz, 190722-17:25:27,488 nipype.interface INFO: stderr 2019-07-22T17:25:27.487888: or viewing/combining it with volumes of differing obliquity, 190722-17:25:27,488 nipype.interface INFO: stderr 2019-07-22T17:25:27.487888: you should consider running: 190722-17:25:27,488 nipype.interface INFO: stderr 2019-07-22T17:25:27.487888: 3dWarp -deoblique 190722-17:25:27,488 nipype.interface INFO: stderr 2019-07-22T17:25:27.487888: on this and other oblique datasets in the same session. 190722-17:25:27,488 nipype.interface INFO: stderr 2019-07-22T17:25:27.487888: See 3dWarp -help for details. 190722-17:25:27,488 nipype.interface INFO: stderr 2019-07-22T17:25:27.487888:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/validate/vol0000_xform-00000_merged_valid.nii.gz is 10.499999 degrees from plumb. 190722-17:25:27,488 nipype.interface INFO: stderr 2019-07-22T17:25:27.488326:++ Coarse del was 10, replaced with 6 190722-17:26:24,989 nipype.interface INFO: stderr 2019-07-22T17:26:24.989158:++ Max displacement in automask = 0.23 (mm) at sub-brick 9 190722-17:26:24,989 nipype.interface INFO: stderr 2019-07-22T17:26:24.989158:++ Max delta displ in automask = 0.21 (mm) at sub-brick 4 190722-17:26:28,929 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-17:26:30,955 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:26:30,959 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:26:35,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:26:36,954 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:26:36,961 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:26:38,483 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:26:38,942 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:26:38,946 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:26:46,120 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:26:46,956 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:26:46,959 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:26:48,84 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:26:48,979 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:26:49,318 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:26:49,324 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:26:54,3 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:26:54,964 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:26:54,969 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:27:03,343 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:27:04,970 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:27:05,52 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:27:06,581 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:27:06,952 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:27:06,957 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:27:11,99 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:27:12,977 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:27:12,981 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:27:13,130 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:27:14,980 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:27:14,984 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:27:19,316 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:27:20,985 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:27:20,988 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:27:21,67 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:27:23,2 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:27:23,6 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:27:23,388 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:27:24,988 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:27:24,991 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:27:25,24 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:27:26,989 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:27:26,993 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:27:27,106 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:27:28,992 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/dvars". 190722-17:27:28,994 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:27:28,997 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-17:27:28,998 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:27:29,152 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:27:52,941 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.merge". 190722-17:27:55,44 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-17:27:55,47 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-17:28:08,133 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.dvars". 190722-17:28:09,697 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:28:09,702 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:28:11,555 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:28:13,103 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:28:13,106 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:28:19,774 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:28:21,34 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:28:21,40 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:28:22,158 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:28:23,56 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:28:23,469 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_hmc_wf/fsl2itk". 190722-17:28:23,476 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-17:28:33,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_hmc_wf.fsl2itk". 190722-17:28:35,46 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:28:35,49 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:28:43,304 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:28:45,56 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:28:45,61 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:28:46,614 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:28:47,36 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:28:47,39 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:28:51,175 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:28:53,64 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:28:53,68 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:28:53,225 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:28:55,65 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:28:55,68 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:28:59,452 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:29:01,70 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:29:01,72 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:29:01,147 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:29:03,89 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:29:03,92 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:29:03,420 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:29:05,54 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:29:05,58 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:29:05,95 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:29:07,68 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:29:07,71 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:29:07,186 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:29:09,77 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:29:09,80 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:29:09,233 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:29:09,916 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-17:29:11,122 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-17:29:11,125 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-17:29:11,180 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_transform". 190722-17:29:11,191 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-17:29:14,484 nipype.interface INFO: stderr 2019-07-22T17:29:14.484658:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-17:29:14,485 nipype.interface INFO: stderr 2019-07-22T17:29:14.485089:++ Authored by: RW Cox 190722-17:29:14,486 nipype.interface INFO: stderr 2019-07-22T17:29:14.485984:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190722-17:29:14,486 nipype.interface INFO: stderr 2019-07-22T17:29:14.486116: Warnings of this type will be muted for this session. 190722-17:29:14,486 nipype.interface INFO: stderr 2019-07-22T17:29:14.486116: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190722-17:29:14,486 nipype.interface INFO: stderr 2019-07-22T17:29:14.486685:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-17:29:14,486 nipype.interface INFO: stderr 2019-07-22T17:29:14.486685: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-17:29:14,487 nipype.interface INFO: stderr 2019-07-22T17:29:14.486685: or viewing/combining it with volumes of differing obliquity, 190722-17:29:14,487 nipype.interface INFO: stderr 2019-07-22T17:29:14.486685: you should consider running: 190722-17:29:14,487 nipype.interface INFO: stderr 2019-07-22T17:29:14.486685: 3dWarp -deoblique 190722-17:29:14,487 nipype.interface INFO: stderr 2019-07-22T17:29:14.486685: on this and other oblique datasets in the same session. 190722-17:29:14,487 nipype.interface INFO: stderr 2019-07-22T17:29:14.486685: See 3dWarp -help for details. 190722-17:29:14,487 nipype.interface INFO: stderr 2019-07-22T17:29:14.487417:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 10.499999 degrees from plumb. 190722-17:29:14,487 nipype.interface INFO: stderr 2019-07-22T17:29:14.487417:++ Coarse del was 10, replaced with 6 190722-17:30:08,378 nipype.interface INFO: stderr 2019-07-22T17:30:08.378723:++ Max displacement in automask = 0.22 (mm) at sub-brick 8 190722-17:30:08,379 nipype.interface INFO: stderr 2019-07-22T17:30:08.378723:++ Max delta displ in automask = 0.15 (mm) at sub-brick 1 190722-17:30:12,180 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-17:30:43,82 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_transform". 190722-17:30:45,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:30:45,237 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:30:45,237 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/merge". 190722-17:30:45,244 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-17:30:49,723 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:30:51,173 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:30:51,178 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:30:55,919 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:30:57,176 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:30:57,180 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:31:03,642 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:31:05,188 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:31:05,191 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:31:06,361 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:31:06,393 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.merge". 190722-17:31:07,250 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:31:07,628 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-17:31:07,630 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:31:07,631 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-17:31:07,634 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:31:12,111 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:31:13,256 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:31:13,261 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:31:16,59 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-17:31:17,212 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-17:31:17,214 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-17:31:19,704 nipype.interface INFO: stderr 2019-07-22T17:31:19.703920:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190722-17:31:19,704 nipype.interface INFO: stderr 2019-07-22T17:31:19.703920:++ Authored by: RW Cox 190722-17:31:19,704 nipype.interface INFO: stderr 2019-07-22T17:31:19.704667:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190722-17:31:19,704 nipype.interface INFO: stderr 2019-07-22T17:31:19.704667: Warnings of this type will be muted for this session. 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.704667: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107: such as /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107: or viewing/combining it with volumes of differing obliquity, 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107: you should consider running: 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107: 3dWarp -deoblique 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107: on this and other oblique datasets in the same session. 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107: See 3dWarp -help for details. 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107:++ Oblique dataset:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 10.499999 degrees from plumb. 190722-17:31:19,705 nipype.interface INFO: stderr 2019-07-22T17:31:19.705107:++ Coarse del was 10, replaced with 6 190722-17:31:21,447 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:31:23,188 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:31:23,191 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:31:24,680 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:31:25,300 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:31:25,305 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:31:29,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:31:31,334 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:31:31,337 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:31:31,574 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:31:33,322 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:31:33,325 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:31:37,627 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:31:39,322 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:31:39,326 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:31:39,405 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:31:41,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:31:41,332 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:31:41,691 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:31:43,326 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:31:43,330 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:31:43,362 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:31:45,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:31:45,331 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:31:45,441 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:31:47,322 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/dvars". 190722-17:31:47,324 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:31:47,325 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-17:31:47,329 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:31:47,485 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:32:07,254 nipype.interface INFO: stderr 2019-07-22T17:32:07.254631:++ Max displacement in automask = 0.17 (mm) at sub-brick 2 190722-17:32:07,254 nipype.interface INFO: stderr 2019-07-22T17:32:07.254631:++ Max delta displ in automask = 0.14 (mm) at sub-brick 5 190722-17:32:10,492 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-17:32:11,342 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:32:11,348 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:32:15,847 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:32:17,282 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:32:17,289 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:32:22,976 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:32:25,253 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:32:25,257 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:32:31,680 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:32:33,279 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:32:33,282 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:32:34,386 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:32:35,261 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:32:35,609 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:32:35,614 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:32:38,578 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:32:39,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:32:39,280 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:32:39,280 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:32:39,284 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:32:45,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:32:47,257 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:32:47,262 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:32:47,327 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:32:48,363 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:32:49,265 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:32:49,270 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:32:49,292 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:32:50,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:32:51,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:32:51,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:32:51,251 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:32:51,254 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:32:55,382 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:32:57,276 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:32:57,280 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:32:57,432 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:32:59,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:32:59,403 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:32:59,451 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:33:01,264 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:33:01,268 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:33:02,772 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:33:03,246 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:33:03,251 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:33:03,747 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:33:05,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:33:05,253 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:33:05,338 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:33:07,249 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:33:07,252 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:33:07,344 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:33:07,570 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:33:09,293 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:33:09,295 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:33:09,414 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:33:09,417 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:33:09,451 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:33:09,578 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:33:11,283 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:33:11,285 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:33:11,288 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:33:11,289 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:33:11,401 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:33:13,255 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/dvars". 190722-17:33:13,256 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:33:13,258 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-17:33:13,259 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:33:13,409 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:33:15,680 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:33:16,691 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.dvars". 190722-17:33:18,205 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:33:18,208 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:33:18,293 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:33:19,282 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:33:19,286 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:33:19,575 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:33:21,390 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:33:21,392 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:33:21,425 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:33:23,271 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:33:23,275 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:33:23,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:33:25,307 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:33:25,312 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:33:25,559 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:33:27,676 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_hmc_wf.fsl2itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_hmc_wf/fsl2itk". 190722-17:33:27,699 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190722-17:33:58,210 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.dvars". 190722-17:34:12,367 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_hmc_wf.fsl2itk". 190722-17:34:13,800 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-17:34:13,862 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-17:34:18,534 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-17:34:19,683 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_transform". 190722-17:34:19,707 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190722-17:41:03,287 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_transform". 190722-17:41:03,665 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-17:41:03,669 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-17:41:03,686 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/merge". 190722-17:41:03,709 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190722-17:41:06,69 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-17:41:07,679 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-17:41:07,685 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-17:41:14,469 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-17:41:15,650 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-17:41:15,655 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-17:41:16,801 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-17:41:17,705 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-17:41:18,79 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4". 190722-17:41:18,84 nipype.workflow INFO: [Node] Setting-up "_inu_n40" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40". 190722-17:41:18,89 nipype.workflow INFO: [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-1468_ses-1_T1w_template_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-1468_ses-1_T1w_template_maths_corrected.nii.gz --shrink-factor 4 190722-17:42:38,421 nipype.workflow INFO: [Node] Finished "_inu_n40". 190722-17:42:38,423 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.inu_n4". 190722-17:42:39,816 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-17:42:39,818 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/lap_target". 190722-17:42:39,819 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/res_target". 190722-17:42:39,820 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-17:42:39,821 nipype.workflow INFO: [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_maths_corrected_maths.nii.gz Laplacian /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-1468_ses-1_T1w_template_maths_corrected.nii.gz 1.5 1 190722-17:42:39,822 nipype.workflow INFO: [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-1468_ses-1_T1w_template_maths_corrected.nii.gz sub-1468_ses-1_T1w_template_maths_corrected_resampled.nii.gz 4 4 4 1 190722-17:42:41,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.res_target". 190722-17:42:47,769 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.lap_target". 190722-17:42:47,996 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-17:42:49,864 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-17:42:49,868 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-17:42:49,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/mrg_target". 190722-17:42:49,870 nipype.workflow INFO: [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge") 190722-17:42:49,873 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.mrg_target". 190722-17:42:51,376 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-17:42:51,882 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-17:42:51,965 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-17:42:52,774 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.merge". 190722-17:42:53,946 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190722-17:42:53,952 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190722-17:42:56,106 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-17:42:57,865 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-17:42:57,869 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-17:42:58,20 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-17:42:59,899 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-17:42:59,903 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-17:43:04,259 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-17:43:05,775 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-17:43:05,778 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:43:05,853 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-17:43:07,745 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-17:43:07,751 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-17:43:08,53 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-17:43:09,757 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-17:43:09,759 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-17:43:09,794 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-17:43:11,884 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-17:43:11,888 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-17:43:12,11 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-17:43:13,782 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-17:43:13,785 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-17:43:13,957 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-17:43:15,755 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/init_aff". 190722-17:43:15,758 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-1468_ses-1_T1w_template_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1 190722-17:43:18,157 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.init_aff". 190722-17:43:19,872 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/norm". 190722-17:43:19,878 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-1468_ses-1_T1w_template_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform Affine[ 0.1 ] --metric MI[ /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-1468_ses-1_T1w_template_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-1468_ses-1_T1w_template_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-1468_ses-1_T1w_template_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0 190722-17:43:29,798 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190722-17:43:31,898 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190722-17:43:31,904 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190722-17:43:33,338 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190722-18:04:09,185 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.norm". 190722-18:04:10,935 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190722-18:04:10,947 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask". 190722-18:04:10,986 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190722-18:04:10,987 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz --interpolation Gaussian --output tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/sub-1468_ses-1_T1w_template.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ] 190722-18:04:15,604 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190722-18:04:16,834 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190722-18:04:16,839 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190722-18:04:19,924 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190722-18:04:20,855 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190722-18:04:20,858 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190722-18:04:27,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190722-18:04:28,842 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-18:04:28,847 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190722-18:04:29,915 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-18:04:30,883 nipype.interface WARNING: q-forms of reference and mask are substantially different 190722-18:04:31,366 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon1". 190722-18:04:31,372 nipype.workflow INFO: [Node] Running "autorecon1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon1 -i /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/sub-1468_ses-1_T1w_template.nii.gz -noskullstrip -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-18:04:44,501 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask". 190722-18:04:46,819 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190722-18:04:46,825 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190722-18:04:54,927 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190722-18:04:56,769 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190722-18:04:56,773 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190722-18:04:58,346 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190722-18:04:58,735 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190722-18:04:58,739 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190722-18:05:02,801 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190722-18:05:04,752 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190722-18:05:04,755 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190722-18:05:04,906 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190722-18:05:06,797 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190722-18:05:06,802 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190722-18:05:11,352 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190722-18:05:12,771 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190722-18:05:12,774 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190722-18:05:12,852 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190722-18:05:14,748 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190722-18:05:14,752 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190722-18:05:15,50 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190722-18:05:16,774 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190722-18:05:16,777 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190722-18:05:16,809 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190722-18:05:18,779 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190722-18:05:18,782 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190722-18:05:18,893 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190722-18:05:20,782 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.dvars" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/dvars". 190722-18:05:20,785 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190722-18:06:24,140 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.dvars". 190722-18:06:25,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190722-18:06:25,474 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190722-18:06:25,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190722-18:06:26,820 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask". 190722-18:06:26,824 nipype.workflow INFO: [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command: ThresholdImage 3 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000 190722-18:06:27,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask". 190722-18:06:28,846 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask". 190722-18:06:28,850 nipype.workflow INFO: [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz PadImage /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 10 190722-18:06:29,598 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask". 190722-18:06:30,825 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask". 190722-18:06:30,828 nipype.workflow INFO: [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz MD /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 2 190722-18:06:32,3 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask". 190722-18:06:32,849 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask". 190722-18:06:32,853 nipype.workflow INFO: [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz GetLargestComponent /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 190722-18:06:33,866 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask". 190722-18:09:03,128 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon1". 190722-18:09:05,228 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos". 190722-18:09:05,231 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm". 190722-18:09:05,233 nipype.workflow INFO: [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command: Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-1468_ses-1_T1w_template_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-1468_ses-1_T1w_template_maths_corrected_labeled.nii.gz] --use-random-seed 1 190722-18:09:05,235 nipype.workflow INFO: [Node] Running "fsnative_2_t1_xfm" ("niworkflows.interfaces.freesurfer.PatchedRobustRegister"), a CommandLine Interface with command: mri_robust_register --satit --iscale --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --mov /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/T1.mgz --dst /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/sub-1468_ses-1_T1w_template.nii.gz 190722-18:09:51,717 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm". 190722-18:09:53,13 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm". 190722-18:09:53,17 nipype.workflow INFO: [Node] Running "t1_2_fsnative_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --invert --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta 190722-18:09:53,99 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm". 190722-18:09:53,180 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos". 190722-18:09:55,69 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm". 190722-18:09:55,71 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk". 190722-18:09:55,72 nipype.workflow INFO: [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths.nii.gz PadImage /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-1468_ses-1_T1w_template_maths_corrected_labeled.nii.gz 10 190722-18:09:55,75 nipype.workflow INFO: [Node] Running "lta_2_itk" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta --outitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk/out.txt 190722-18:09:55,175 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk". 190722-18:09:55,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm". 190722-18:09:57,88 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels". 190722-18:09:57,99 nipype.workflow INFO: [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function") 190722-18:09:57,455 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels". 190722-18:09:59,70 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf". 190722-18:09:59,71 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf". 190722-18:09:59,72 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm". 190722-18:09:59,73 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm". 190722-18:09:59,74 nipype.workflow INFO: [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-01.nii.gz -10 190722-18:09:59,74 nipype.workflow INFO: [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-01.nii.gz 10 190722-18:09:59,76 nipype.workflow INFO: [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-02.nii.gz 190722-18:09:59,77 nipype.workflow INFO: [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-03.nii.gz 190722-18:09:59,724 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf". 190722-18:10:00,296 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm". 190722-18:10:00,340 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm". 190722-18:10:01,34 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm". 190722-18:10:01,35 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm". 190722-18:10:01,38 nipype.workflow INFO: [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-02_maths.nii.gz 2 190722-18:10:01,38 nipype.workflow INFO: [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz 190722-18:10:01,937 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm". 190722-18:10:03,30 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm". 190722-18:10:03,33 nipype.workflow INFO: [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10 190722-18:10:03,49 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf". 190722-18:10:03,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm". 190722-18:10:08,425 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm". 190722-18:10:09,254 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm". 190722-18:10:09,259 nipype.workflow INFO: [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-02_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz 190722-18:10:10,315 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm". 190722-18:10:11,173 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm". 190722-18:10:11,177 nipype.workflow INFO: [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 08_mult_gm_maths.nii.gz addtozero /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-1468_ses-1_T1w_template_maths_corrected_labeled_maths_class-01_maths.nii.gz 190722-18:10:14,668 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm". 190722-18:10:15,81 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm". 190722-18:10:15,85 nipype.workflow INFO: [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz 190722-18:10:15,925 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm". 190722-18:10:17,99 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm". 190722-18:10:17,101 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm". 190722-18:10:17,103 nipype.workflow INFO: [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10 190722-18:10:17,104 nipype.workflow INFO: [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz 190722-18:10:17,907 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm". 190722-18:10:19,87 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms". 190722-18:10:19,90 nipype.workflow INFO: [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge") 190722-18:10:19,94 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms". 190722-18:10:20,754 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm". 190722-18:10:23,62 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm". 190722-18:10:23,63 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2". 190722-18:10:23,65 nipype.workflow INFO: [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10 190722-18:10:23,67 nipype.workflow INFO: [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function") 190722-18:10:23,376 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2". 190722-18:10:23,899 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm". 190722-18:10:25,70 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7". 190722-18:10:25,75 nipype.workflow INFO: [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz 190722-18:10:28,238 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7". 190722-18:10:29,92 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7". 190722-18:10:29,99 nipype.workflow INFO: [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2 190722-18:10:31,785 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7". 190722-18:10:33,96 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7". 190722-18:10:33,99 nipype.workflow INFO: [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz 190722-18:10:34,463 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7". 190722-18:10:35,120 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7". 190722-18:10:35,124 nipype.workflow INFO: [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4 190722-18:10:36,651 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7". 190722-18:10:37,99 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7". 190722-18:10:37,103 nipype.workflow INFO: [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2 190722-18:10:44,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7". 190722-18:10:45,111 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2". 190722-18:10:45,115 nipype.workflow INFO: [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 190722-18:10:48,507 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2". 190722-18:10:49,114 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2". 190722-18:10:49,119 nipype.workflow INFO: [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5 190722-18:10:50,686 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2". 190722-18:10:51,114 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2". 190722-18:10:51,117 nipype.workflow INFO: [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5 190722-18:10:53,883 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2". 190722-18:10:55,78 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask". 190722-18:10:55,81 nipype.workflow INFO: [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10 190722-18:10:55,828 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask". 190722-18:10:57,126 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform". 190722-18:10:57,129 nipype.workflow INFO: [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function") 190722-18:10:57,332 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform". 190722-18:11:03,81 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final". 190722-18:11:03,85 nipype.workflow INFO: [Node] Setting-up "_inu_n4_final0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0". 190722-18:11:03,89 nipype.workflow INFO: [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_template_wf/t1_merge/sub-1468_ses-1_T1w_template.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-1468_ses-1_T1w_template_corrected.nii.gz, sub-1468_ses-1_T1w_template_bias.nii.gz ] --shrink-factor 4 --weight-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz 190722-18:11:39,709 nipype.workflow INFO: [Node] Finished "_inu_n4_final0". 190722-18:11:39,712 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final". 190722-18:11:41,168 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/apply_mask". 190722-18:11:41,172 nipype.workflow INFO: [Node] Setting-up "_apply_mask0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0". 190722-18:11:41,179 nipype.workflow INFO: [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-1468_ses-1_T1w_template_corrected.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-1468_ses-1_T1w_template_corrected_masked.nii.gz 190722-18:11:42,441 nipype.workflow INFO: [Node] Finished "_apply_mask0". 190722-18:11:42,443 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.brain_extraction_wf.apply_mask". 190722-18:11:48,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/trunc_mov". 190722-18:11:48,831 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-1468_ses-1_T1w_template_corrected_xform_maths.nii.gz TruncateImageIntensity /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 0.01 0.999 256 190722-18:11:52,191 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190722-18:11:54,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern". 190722-18:11:54,672 nipype.workflow INFO: [Node] Running "skull_strip_extern" ("niworkflows.interfaces.freesurfer.FSInjectBrainExtracted") 190722-18:11:56,62 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern". 190722-18:11:57,38 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol". 190722-18:11:57,43 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-18:11:57,43 nipype.workflow INFO: [Node] Running "autorecon2_vol" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon2-volonly -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-18:11:57,44 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-20:27:08,784 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol". 190722-20:27:12,135 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190722-20:27:12,140 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-20:27:12,141 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-20:27:12,142 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-21:20:04,545 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190722-21:20:06,713 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190722-21:20:06,726 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-21:20:06,727 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-21:20:06,729 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-22:21:54,460 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190722-22:21:55,831 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs". 190722-22:21:56,46 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190722-22:21:56,57 nipype.interface INFO: recon-all complete : Not running 190722-22:21:56,57 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-22:21:56,59 nipype.interface INFO: recon-all complete : Not running 190722-22:21:56,153 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190722-22:21:56,156 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190722-22:21:56,162 nipype.interface INFO: recon-all complete : Not running 190722-22:21:56,162 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-22:21:56,164 nipype.interface INFO: recon-all complete : Not running 190722-22:21:56,245 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190722-22:21:56,250 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs". 190722-22:21:59,848 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190722-22:21:59,855 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-22:21:59,855 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi lh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-22:21:59,857 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190722-22:39:55,482 nipype.workflow INFO: [Node] Finished "_autorecon30". 190722-22:39:56,826 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190722-22:39:56,849 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortribbon -nohyporelabel -noapas2aseg -nosegstats -nowmparc 190722-22:39:56,850 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi rh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortribbon -nohyporelabel -noapas2aseg -nosegstats -nowmparc 190722-22:39:56,851 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortribbon -nohyporelabel -noapas2aseg -nosegstats -nowmparc 190722-22:54:07,525 nipype.workflow INFO: [Node] Finished "_autorecon31". 190722-22:54:09,548 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3". 190722-22:54:09,554 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190722-22:54:09,561 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels 190722-22:54:09,561 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi lh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels 190722-22:54:09,563 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 7 -subjid sub-1468 -sd /gpfs/ysm/scratch60/oad4/output/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels 190722-22:54:13,232 nipype.workflow INFO: [Node] Finished "_autorecon30". 190722-22:54:13,234 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190722-22:54:13,240 nipype.interface INFO: recon-all complete : Not running 190722-22:54:13,240 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-22:54:13,242 nipype.interface INFO: recon-all complete : Not running 190722-22:54:13,321 nipype.workflow INFO: [Node] Finished "_autorecon31". 190722-22:54:13,326 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3". 190722-22:54:15,553 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/targets". 190722-22:54:15,559 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:15,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-22:54:15,562 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:15,566 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:15,569 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.targets". 190722-22:54:15,570 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-22:54:17,521 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/targets". 190722-22:54:17,527 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:17,530 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:17,533 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:17,535 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.targets". 190722-22:54:19,506 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/targets". 190722-22:54:19,512 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:19,516 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:19,520 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:19,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.targets". 190722-22:54:21,509 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/targets". 190722-22:54:21,514 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:21,517 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:21,520 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:21,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.targets". 190722-22:54:23,510 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/targets". 190722-22:54:23,516 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:23,518 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:23,522 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:23,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.targets". 190722-22:54:25,511 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/targets". 190722-22:54:25,515 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:25,518 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:25,521 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:25,523 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.targets". 190722-22:54:27,543 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/targets". 190722-22:54:27,547 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:27,551 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:27,554 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:27,556 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.targets". 190722-22:54:29,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/targets". 190722-22:54:29,496 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:29,500 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:29,503 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:29,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.targets". 190722-22:54:31,515 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/targets". 190722-22:54:31,519 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:31,522 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:31,525 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:31,527 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.targets". 190722-22:54:33,651 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/targets". 190722-22:54:33,655 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:33,659 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:33,663 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:33,665 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.targets". 190722-22:54:35,513 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.targets" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/targets". 190722-22:54:35,516 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/targets/mapflow/_targets0". 190722-22:54:35,519 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190722-22:54:35,522 nipype.workflow INFO: [Node] Finished "_targets0". 190722-22:54:35,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.targets". 190722-22:54:37,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/fs_datasource". 190722-22:54:37,497 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190722-22:54:37,514 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource". 190722-22:54:38,682 nipype.interface INFO: stdout 2019-07-22T22:54:38.682147: 190722-22:54:38,682 nipype.interface INFO: stdout 2019-07-22T22:54:38.682147:Matrix from LTA: 190722-22:54:38,682 nipype.interface INFO: stdout 2019-07-22T22:54:38.682147: 0.99963 -0.00705 0.02631 -4.18637; 190722-22:54:38,682 nipype.interface INFO: stdout 2019-07-22T22:54:38.682147:-0.02722 -0.29286 0.95577 -27.46486; 190722-22:54:38,682 nipype.interface INFO: stdout 2019-07-22T22:54:38.682147: 0.00096 -0.95613 -0.29294 -11.83786; 190722-22:54:38,682 nipype.interface INFO: stdout 2019-07-22T22:54:38.682147: 0.00000 0.00000 0.00000 1.00000; 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:invert 0 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:tal 0 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:talres 2 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:regheader 0 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:noresample 0 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:interp nearest (0) 190722-22:54:38,822 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:precision float (3) 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:Gdiag_no -1 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:Synth 0 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:SynthSeed 1564594489 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:Final tkRAS-to-tkRAS Matrix is: 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 0.99963 -0.00705 0.02631 -4.18637; 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:-0.02722 -0.29286 0.95577 -27.46486; 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 0.00096 -0.95613 -0.29294 -11.83785; 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 0.00000 0.00000 0.00000 1.00000; 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105:Vox2Vox Matrix is: 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 0.49981 0.01316 0.00353 -9.01850; 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 0.00048 -0.14647 0.47806 18.41324; 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 0.01361 -0.47788 -0.14643 94.43732; 190722-22:54:38,823 nipype.interface INFO: stdout 2019-07-22T22:54:38.822105: 0.00000 0.00000 0.00000 1.00000; 190722-22:54:39,494 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative". 190722-22:54:39,568 nipype.interface INFO: stdout 2019-07-22T22:54:39.568329: 190722-22:54:39,568 nipype.interface INFO: stdout 2019-07-22T22:54:39.568329:Resampling 190722-22:54:39,568 nipype.interface INFO: stdout 2019-07-22T22:54:39.568329:Output registration matrix is identity 190722-22:54:39,568 nipype.interface INFO: stdout 2019-07-22T22:54:39.568329: 190722-22:54:39,568 nipype.interface INFO: stdout 2019-07-22T22:54:39.568329:mri_vol2vol done 190722-22:54:39,573 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/aseg.mgz --seg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg.mgz --temp /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/rawavg.mgz --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz 190722-22:54:45,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative". 190722-22:54:45,527 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii". 190722-22:54:45,532 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz --input_volume /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz --output_volume /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz 190722-22:54:46,545 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii". 190722-22:54:49,440 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/fs_datasource". 190722-22:54:49,442 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190722-22:54:49,458 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource". 190722-22:54:51,783 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative". 190722-22:54:51,787 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/aseg.mgz --seg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg.mgz --temp /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/rawavg.mgz --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz 190722-22:54:55,146 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-22:54:55,826 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-22:54:55,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/get_surfaces". 190722-22:54:55,830 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/recon_report". 190722-22:54:55,831 nipype.workflow INFO: [Node] Running "get_surfaces" ("nipype.interfaces.io.FreeSurferSource") 190722-22:54:55,832 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-22:54:55,836 nipype.interface INFO: recon-all complete : Not running 190722-22:54:55,837 nipype.workflow INFO: [Node] Running "recon_report" ("niworkflows.interfaces.segmentation.ReconAllRPT"), a CommandLine Interface with command: echo recon-all: nothing to do 190722-22:54:55,839 nipype.interface INFO: recon-all complete : Not running 190722-22:54:55,851 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces". 190722-22:54:57,305 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative". 190722-22:54:57,769 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii". 190722-22:54:57,774 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz --input_volume /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz --output_volume /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz 190722-22:54:58,699 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii". 190722-22:55:01,848 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.refine" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/refine". 190722-22:55:01,848 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190722-22:55:01,852 nipype.workflow INFO: [Node] Running "refine" ("niworkflows.interfaces.freesurfer.RefineBrainMask") 190722-22:55:01,853 nipype.workflow INFO: [Node] Running "_midthickness0" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.pial -thickness -thickness_name /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.thickness /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.smoothwm 0.5 midthickness 190722-22:55:01,855 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190722-22:55:01,859 nipype.workflow INFO: [Node] Running "_midthickness1" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.pial -thickness -thickness_name /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.thickness /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.smoothwm 0.5 midthickness 190722-22:55:03,30 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report". 190722-22:55:33,802 nipype.interface INFO: stdout 2019-07-22T22:55:33.802372: 190722-22:55:33,802 nipype.interface INFO: stdout 2019-07-22T22:55:33.802372:Matrix from LTA: 190722-22:55:33,802 nipype.interface INFO: stdout 2019-07-22T22:55:33.802372: 0.99953 -0.00858 0.02925 -4.21710; 190722-22:55:33,802 nipype.interface INFO: stdout 2019-07-22T22:55:33.802372:-0.03047 -0.31138 0.94980 -29.57043; 190722-22:55:33,802 nipype.interface INFO: stdout 2019-07-22T22:55:33.802372: 0.00096 -0.95025 -0.31150 -9.83911; 190722-22:55:33,802 nipype.interface INFO: stdout 2019-07-22T22:55:33.802372: 0.00000 0.00000 0.00000 1.00000; 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:invert 0 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:tal 0 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:talres 2 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:regheader 0 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:noresample 0 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:interp nearest (0) 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:precision float (3) 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:Gdiag_no -1 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:Synth 0 190722-22:55:33,939 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:SynthSeed 1564712050 190722-22:55:33,940 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 190722-22:55:33,948 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:Final tkRAS-to-tkRAS Matrix is: 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 0.99953 -0.00858 0.02925 -4.21707; 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:-0.03047 -0.31138 0.94980 -29.57047; 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 0.00096 -0.95025 -0.31150 -9.83911; 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 0.00000 0.00000 0.00000 1.00000; 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174:Vox2Vox Matrix is: 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 0.49977 0.01463 0.00429 -9.28293; 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 0.00048 -0.15575 0.47512 18.97810; 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 0.01524 -0.47490 -0.15569 93.98002; 190722-22:55:33,949 nipype.interface INFO: stdout 2019-07-22T22:55:33.939174: 0.00000 0.00000 0.00000 1.00000; 190722-22:55:34,719 nipype.interface INFO: stdout 2019-07-22T22:55:34.719358: 190722-22:55:34,719 nipype.interface INFO: stdout 2019-07-22T22:55:34.719358:Resampling 190722-22:55:34,719 nipype.interface INFO: stdout 2019-07-22T22:55:34.719358:Output registration matrix is identity 190722-22:55:34,719 nipype.interface INFO: stdout 2019-07-22T22:55:34.719358: 190722-22:55:34,719 nipype.interface INFO: stdout 2019-07-22T22:55:34.719358:mri_vol2vol done 190722-22:55:45,761 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.refine". 190722-22:55:46,943 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.applyrefined" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined". 190722-22:55:46,947 nipype.workflow INFO: [Node] Running "applyrefined" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/refine/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz 190722-22:55:48,222 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.applyrefined". 190722-22:55:50,205 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/gen_ref". 190722-22:55:50,208 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:55:50,212 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/gen_ref". 190722-22:55:50,214 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:55:50,217 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/gen_ref". 190722-22:55:50,220 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:55:50,224 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/gen_ref". 190722-22:55:50,226 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:55:50,229 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/gen_ref". 190722-22:55:50,232 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:55:50,305 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-22:55:50,910 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.gen_ref". 190722-22:55:50,924 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.gen_ref". 190722-22:55:50,926 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.gen_ref". 190722-22:55:50,927 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.gen_ref". 190722-22:55:50,932 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.gen_ref". 190722-22:55:52,882 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:55:52,883 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:55:52,885 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:55:52,887 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:55:52,887 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:55:52,888 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:55:52,889 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:55:52,890 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:55:52,891 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:55:52,892 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:55:52,892 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:55:52,899 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:55:58,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:55:59,96 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:55:59,194 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:55:59,219 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:55:59,270 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:55:59,329 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:00,266 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:56:00,267 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:56:00,269 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:00,269 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:56:00,271 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:00,273 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:00,283 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:56:00,286 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:00,289 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/gen_ref". 190722-22:56:00,293 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:56:00,296 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/gen_ref". 190722-22:56:00,298 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:56:00,998 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.gen_ref". 190722-22:56:01,31 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.gen_ref". 190722-22:56:02,220 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:56:02,221 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:56:02,223 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:02,225 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:06,490 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:06,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:56:06,620 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:56:06,624 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:08,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:56:08,405 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:56:08,408 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:08,410 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/gen_ref". 190722-22:56:08,410 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:08,412 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:56:08,416 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/gen_ref". 190722-22:56:08,420 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:56:08,625 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:56:09,94 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:09,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.gen_ref". 190722-22:56:09,110 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.gen_ref". 190722-22:56:10,241 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:56:10,243 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:56:10,244 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:56:10,245 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:10,246 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:10,248 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:56:10,249 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:10,251 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:14,433 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:56:14,678 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:16,83 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:56:16,229 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/gen_ref". 190722-22:56:16,232 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:56:16,234 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/gen_ref". 190722-22:56:16,237 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190722-22:56:16,425 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:16,602 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:16,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:56:16,909 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.gen_ref". 190722-22:56:16,926 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.gen_ref". 190722-22:56:18,236 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:56:18,238 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:56:18,240 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:18,241 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190722-22:56:18,243 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:18,244 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:18,254 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190722-22:56:18,259 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.t1_seg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/t1_seg". 190722-22:56:18,260 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-22:56:18,272 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz -t identity 190722-22:56:18,272 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-22:56:18,273 nipype.workflow INFO: [Node] Running "t1_seg" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command: fast -N -p -g -S 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/t1_seg/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz 190722-22:56:18,390 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-22:56:20,245 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-22:56:20,248 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-22:56:20,333 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-22:56:22,254 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-22:56:22,258 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-22:56:22,259 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-22:56:22,259 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-22:56:22,260 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-22:56:22,261 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-22:56:22,261 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-22:56:22,263 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-22:56:23,973 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:56:24,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-22:56:24,237 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-22:56:24,272 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-22:56:24,496 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190722-22:56:24,610 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:24,641 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190722-22:56:28,589 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-22:56:28,592 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-22:56:28,696 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-22:56:30,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-22:56:30,252 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-22:56:30,255 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-22:56:30,257 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-22:56:30,359 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-22:56:30,365 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-22:56:32,483 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-22:56:32,486 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-22:56:32,489 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:56:32,491 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-22:56:32,821 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-22:56:32,830 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-22:56:34,737 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-22:56:34,740 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-22:56:39,102 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-22:56:40,411 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-22:56:40,416 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-22:56:41,69 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-22:58:00,191 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.t1_seg". 190722-22:58:06,876 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_derivatives_wf/lut_t1_seg". 190722-22:58:06,879 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/wm_roi". 190722-22:58:06,880 nipype.workflow INFO: [Node] Running "lut_t1_seg" ("nipype.interfaces.utility.wrappers.Function") 190722-22:58:06,892 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/csf_roi". 190722-22:58:06,894 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:06,894 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:06,896 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/wm_roi". 190722-22:58:06,897 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:06,897 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:06,898 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/csf_roi". 190722-22:58:06,899 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:06,900 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:07,274 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg". 190722-22:58:07,553 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.csf_roi". 190722-22:58:07,583 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.csf_roi". 190722-22:58:07,914 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:10,614 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.wm_roi". 190722-22:58:10,784 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.wm_roi". 190722-22:58:11,246 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/tcc_tfm". 190722-22:58:11,248 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/csf_tfm". 190722-22:58:11,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/acc_roi". 190722-22:58:11,251 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:58:11,251 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:58:11,252 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:11,253 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:11,255 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:11,514 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.csf_tfm". 190722-22:58:11,516 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tcc_tfm". 190722-22:58:11,648 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/wm_tfm". 190722-22:58:11,651 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/wm_roi". 190722-22:58:11,652 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:58:11,655 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:11,935 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.wm_tfm". 190722-22:58:12,270 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:13,608 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/wm_msk". 190722-22:58:13,609 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/tcc_msk". 190722-22:58:13,610 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-22:58:13,611 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/csf_msk". 190722-22:58:13,612 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-22:58:13,612 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/acc_roi". 190722-22:58:13,613 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-22:58:13,615 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:13,657 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.wm_msk". 190722-22:58:13,657 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tcc_msk". 190722-22:58:13,661 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.csf_msk". 190722-22:58:14,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acc_roi". 190722-22:58:15,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.wm_roi". 190722-22:58:15,665 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/tcompcor". 190722-22:58:15,669 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-22:58:15,997 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/acc_tfm". 190722-22:58:15,999 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/csf_roi". 190722-22:58:16,0 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:16,20 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:16,21 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:16,21 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-22:58:16,273 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acc_tfm". 190722-22:58:16,657 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.csf_roi". 190722-22:58:17,53 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:17,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acc_roi". 190722-22:58:17,788 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/signals". 190722-22:58:17,789 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/acc_msk". 190722-22:58:17,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/acc_roi". 190722-22:58:17,793 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-22:58:17,794 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-22:58:17,794 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/wm_roi". 190722-22:58:17,794 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:17,795 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/csf_roi". 190722-22:58:17,796 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:17,798 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:17,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acc_msk". 190722-22:58:18,413 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.csf_roi". 190722-22:58:20,222 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:20,224 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/wm_roi". 190722-22:58:20,224 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:20,226 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:21,317 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:21,518 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acc_roi". 190722-22:58:21,801 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.wm_roi". 190722-22:58:23,624 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/acompcor". 190722-22:58:23,624 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/acc_roi". 190722-22:58:23,626 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/csf_roi". 190722-22:58:23,627 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-22:58:23,630 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:23,631 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:23,981 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tcompcor". 190722-22:58:24,315 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.wm_roi". 190722-22:58:24,348 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.csf_roi". 190722-22:58:25,598 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-22:58:25,601 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-22:58:25,895 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-22:58:26,81 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:26,83 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:26,85 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/wm_roi". 190722-22:58:26,87 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:26,512 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.signals". 190722-22:58:27,111 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:27,181 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acc_roi". 190722-22:58:27,623 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/rois_plot". 190722-22:58:27,624 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/acc_roi". 190722-22:58:27,626 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/csf_roi". 190722-22:58:27,627 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:27,627 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-22:58:27,628 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:27,628 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:27,630 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:28,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.csf_roi". 190722-22:58:28,656 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:29,640 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/acc_roi". 190722-22:58:29,642 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/wm_roi". 190722-22:58:29,643 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:29,645 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:30,82 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.wm_roi". 190722-22:58:31,530 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acc_roi". 190722-22:58:31,786 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/csf_roi". 190722-22:58:31,790 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:32,440 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.csf_roi". 190722-22:58:33,467 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acc_roi". 190722-22:58:33,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.wm_roi". 190722-22:58:33,610 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:33,613 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/wm_roi". 190722-22:58:33,613 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:33,615 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:34,339 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acompcor". 190722-22:58:34,650 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:36,71 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/acc_metadata_fmt". 190722-22:58:36,73 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-22:58:36,401 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.acc_metadata_fmt". 190722-22:58:37,154 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/acc_roi". 190722-22:58:37,156 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/csf_roi". 190722-22:58:37,157 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:37,158 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:37,159 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:37,160 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:37,415 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.wm_roi". 190722-22:58:37,610 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/compcor_plot". 190722-22:58:37,648 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-22:58:37,802 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.csf_roi". 190722-22:58:38,165 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.compcor_plot". 190722-22:58:38,201 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:40,799 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acc_roi". 190722-22:58:41,621 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/conf_corr_plot". 190722-22:58:41,622 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/model_expansion". 190722-22:58:41,624 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/acc_roi". 190722-22:58:41,624 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-22:58:41,625 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-22:58:41,626 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:41,627 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/wm_roi". 190722-22:58:41,630 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:42,372 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.model_expansion". 190722-22:58:42,757 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.rois_plot". 190722-22:58:43,268 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/csf_roi". 190722-22:58:43,271 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:43,932 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.csf_roi". 190722-22:58:44,425 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_confounds_wf/spike_regressors". 190722-22:58:44,426 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:44,428 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-22:58:44,429 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:44,979 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.spike_regressors". 190722-22:58:45,333 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_confounds_wf.conf_corr_plot". 190722-22:58:45,389 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acc_roi". 190722-22:58:45,447 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:45,604 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.wm_roi". 190722-22:58:47,670 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/acc_roi". 190722-22:58:47,673 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:47,673 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/wm_roi". 190722-22:58:47,676 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/csf_roi". 190722-22:58:47,676 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:47,676 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:47,678 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:47,679 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.wm_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/wm_roi". 190722-22:58:47,679 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:47,682 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.csf_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/csf_roi". 190722-22:58:47,683 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:47,684 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:48,375 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.csf_roi". 190722-22:58:48,400 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.csf_roi". 190722-22:58:48,713 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:50,668 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/acc_roi". 190722-22:58:50,669 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tpms_add_csf_wm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/tpms_add_csf_wm". 190722-22:58:50,672 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:50,672 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190722-22:58:50,676 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.seg_rpt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/seg_rpt". 190722-22:58:50,678 nipype.workflow INFO: [Node] Running "seg_rpt" ("niworkflows.interfaces.masks.ROIsPlot") 190722-22:58:51,105 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acc_roi". 190722-22:58:51,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.wm_roi". 190722-22:58:51,652 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.wm_roi". 190722-22:58:51,704 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tpms_add_csf_wm". 190722-22:58:54,124 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acc_roi" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/acc_roi". 190722-22:58:54,127 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190722-22:58:54,214 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acc_roi". 190722-22:58:57,25 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.seg_rpt". 190722-22:58:57,636 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acc_roi". 190722-23:06:22,590 nipype.workflow INFO: [Node] Finished "_midthickness1". 190722-23:06:24,422 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:06:24,429 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:06:48,272 nipype.interface INFO: stdout 2019-07-22T23:06:48.272657: 190722-23:06:48,272 nipype.interface INFO: stdout 2019-07-22T23:06:48.272657:Matrix from LTA: 190722-23:06:48,273 nipype.interface INFO: stdout 2019-07-22T23:06:48.272657: 0.99878 -0.02376 0.04318 -4.74930; 190722-23:06:48,273 nipype.interface INFO: stdout 2019-07-22T23:06:48.272657:-0.04829 -0.29708 0.95363 -30.56708; 190722-23:06:48,273 nipype.interface INFO: stdout 2019-07-22T23:06:48.272657:-0.00983 -0.95456 -0.29786 -9.82013; 190722-23:06:48,273 nipype.interface INFO: stdout 2019-07-22T23:06:48.272657: 0.00000 0.00000 0.00000 1.00000; 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:invert 0 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:tal 0 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:talres 2 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:regheader 0 190722-23:06:48,410 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:noresample 0 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:interp nearest (0) 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:precision float (3) 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:Gdiag_no -1 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:Synth 0 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:SynthSeed 1564183501 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:Final tkRAS-to-tkRAS Matrix is: 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 0.99878 -0.02376 0.04318 -4.74928; 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:-0.04829 -0.29708 0.95363 -30.56708; 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:-0.00983 -0.95456 -0.29786 -9.82011; 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 0.00000 0.00000 0.00000 1.00000; 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:Vox2Vox Matrix is: 190722-23:06:48,411 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 0.49939 0.02159 0.01188 -10.83121; 190722-23:06:48,412 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326:-0.00491 -0.14893 0.47728 18.51051; 190722-23:06:48,412 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 0.02415 -0.47682 -0.14854 91.67123; 190722-23:06:48,412 nipype.interface INFO: stdout 2019-07-22T23:06:48.410326: 0.00000 0.00000 0.00000 1.00000; 190722-23:06:49,168 nipype.interface INFO: stdout 2019-07-22T23:06:49.168518: 190722-23:06:49,168 nipype.interface INFO: stdout 2019-07-22T23:06:49.168518:Resampling 190722-23:06:49,168 nipype.interface INFO: stdout 2019-07-22T23:06:49.168518:Output registration matrix is identity 190722-23:06:49,168 nipype.interface INFO: stdout 2019-07-22T23:06:49.168518: 190722-23:06:49,168 nipype.interface INFO: stdout 2019-07-22T23:06:49.168518:mri_vol2vol done 190722-23:07:04,737 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:07:06,465 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:07:06,471 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:07:20,998 nipype.workflow INFO: [Node] Finished "_midthickness0". 190722-23:07:22,597 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:07:22,602 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:07:34,994 nipype.interface INFO: stdout 2019-07-22T23:07:34.994786: 190722-23:07:34,995 nipype.interface INFO: stdout 2019-07-22T23:07:34.994786:Matrix from LTA: 190722-23:07:34,995 nipype.interface INFO: stdout 2019-07-22T23:07:34.994786: 0.99899 -0.02261 0.03891 -4.52200; 190722-23:07:34,995 nipype.interface INFO: stdout 2019-07-22T23:07:34.994786:-0.04404 -0.31265 0.94885 -32.71112; 190722-23:07:34,995 nipype.interface INFO: stdout 2019-07-22T23:07:34.994786:-0.00929 -0.94960 -0.31333 -7.73354; 190722-23:07:34,995 nipype.interface INFO: stdout 2019-07-22T23:07:34.994786: 0.00000 0.00000 0.00000 1.00000; 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:invert 0 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:tal 0 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:talres 2 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:regheader 0 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:noresample 0 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:interp nearest (0) 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:precision float (3) 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:Gdiag_no -1 190722-23:07:35,131 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:Synth 0 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:SynthSeed 1563905138 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:Final tkRAS-to-tkRAS Matrix is: 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 0.99899 -0.02261 0.03891 -4.52199; 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:-0.04404 -0.31265 0.94885 -32.71114; 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:-0.00929 -0.94960 -0.31333 -7.73354; 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 0.00000 0.00000 0.00000 1.00000; 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:Vox2Vox Matrix is: 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 0.49949 0.01946 0.01130 -10.61158; 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151:-0.00464 -0.15667 0.47480 18.74018; 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 0.02202 -0.47442 -0.15633 91.56212; 190722-23:07:35,132 nipype.interface INFO: stdout 2019-07-22T23:07:35.131151: 0.00000 0.00000 0.00000 1.00000; 190722-23:07:36,22 nipype.interface INFO: stdout 2019-07-22T23:07:36.022717: 190722-23:07:36,22 nipype.interface INFO: stdout 2019-07-22T23:07:36.022717:Resampling 190722-23:07:36,22 nipype.interface INFO: stdout 2019-07-22T23:07:36.022717:Output registration matrix is identity 190722-23:07:36,39 nipype.interface INFO: stdout 2019-07-22T23:07:36.022717: 190722-23:07:36,39 nipype.interface INFO: stdout 2019-07-22T23:07:36.022717:mri_vol2vol done 190722-23:07:45,781 nipype.interface INFO: stdout 2019-07-22T23:07:45.781423: 190722-23:07:45,781 nipype.interface INFO: stdout 2019-07-22T23:07:45.781423:Matrix from LTA: 190722-23:07:45,781 nipype.interface INFO: stdout 2019-07-22T23:07:45.781423: 0.99894 -0.01900 0.04200 -4.83653; 190722-23:07:45,781 nipype.interface INFO: stdout 2019-07-22T23:07:45.781423:-0.04571 -0.29115 0.95558 -29.22086; 190722-23:07:45,781 nipype.interface INFO: stdout 2019-07-22T23:07:45.781423:-0.00593 -0.95649 -0.29171 -10.94911; 190722-23:07:45,781 nipype.interface INFO: stdout 2019-07-22T23:07:45.781423: 0.00000 0.00000 0.00000 1.00000; 190722-23:07:45,918 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 190722-23:07:45,918 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:invert 0 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:tal 0 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:talres 2 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:regheader 0 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:noresample 0 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:interp nearest (0) 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:precision float (3) 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:Gdiag_no -1 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:Synth 0 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:SynthSeed 1564691927 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:Final tkRAS-to-tkRAS Matrix is: 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 0.99894 -0.01900 0.04200 -4.83653; 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:-0.04571 -0.29115 0.95558 -29.22087; 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:-0.00593 -0.95649 -0.29171 -10.94910; 190722-23:07:45,919 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 0.00000 0.00000 0.00000 1.00000; 190722-23:07:45,920 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 190722-23:07:45,920 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 190722-23:07:45,920 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:Vox2Vox Matrix is: 190722-23:07:45,920 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 0.49947 0.02100 0.00950 -10.41776; 190722-23:07:45,920 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662:-0.00297 -0.14586 0.47824 18.30836; 190722-23:07:45,920 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 0.02286 -0.47779 -0.14558 92.25491; 190722-23:07:45,920 nipype.interface INFO: stdout 2019-07-22T23:07:45.918662: 0.00000 0.00000 0.00000 1.00000; 190722-23:07:46,733 nipype.interface INFO: stdout 2019-07-22T23:07:46.733734: 190722-23:07:46,733 nipype.interface INFO: stdout 2019-07-22T23:07:46.733734:Resampling 190722-23:07:46,733 nipype.interface INFO: stdout 2019-07-22T23:07:46.733734:Output registration matrix is identity 190722-23:07:46,734 nipype.interface INFO: stdout 2019-07-22T23:07:46.733734: 190722-23:07:46,734 nipype.interface INFO: stdout 2019-07-22T23:07:46.733734:mri_vol2vol done 190722-23:07:51,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:07:53,174 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness". 190722-23:07:53,178 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190722-23:07:53,179 nipype.workflow INFO: [Node] Cached "_midthickness0" - collecting precomputed outputs 190722-23:07:53,179 nipype.workflow INFO: [Node] "_midthickness0" found cached. 190722-23:07:53,180 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190722-23:07:53,181 nipype.workflow INFO: [Node] Cached "_midthickness1" - collecting precomputed outputs 190722-23:07:53,181 nipype.workflow INFO: [Node] "_midthickness1" found cached. 190722-23:07:53,183 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness". 190722-23:07:54,528 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/save_midthickness". 190722-23:07:54,532 nipype.workflow INFO: [Node] Running "save_midthickness" ("nipype.interfaces.io.DataSink") 190722-23:07:54,537 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness". 190722-23:07:56,835 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:07:56,839 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:07:57,16 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:07:58,526 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:07:58,530 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:07:58,621 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:08:00,530 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:08:00,533 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:08:00,534 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:08:00,534 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:08:00,535 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:08:00,536 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:08:00,536 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:08:00,538 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:08:01,518 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:08:02,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:08:02,563 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:08:02,564 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:08:02,564 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190722-23:08:02,565 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190722-23:08:02,567 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190722-23:08:02,568 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190722-23:08:02,569 nipype.workflow INFO: [Node] Running "_fs_2_gii0" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/surf/rh.smoothwm /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0/rh.smoothwm_converted.gii 190722-23:08:02,569 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:08:02,569 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190722-23:08:02,570 nipype.workflow INFO: [Node] Running "_fs_2_gii1" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/surf/lh.smoothwm /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1/lh.smoothwm_converted.gii 190722-23:08:02,570 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190722-23:08:02,573 nipype.workflow INFO: [Node] Running "_fs_2_gii4" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/surf/rh.inflated /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4/rh.inflated_converted.gii 190722-23:08:02,573 nipype.workflow INFO: [Node] Running "_fs_2_gii3" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/surf/lh.pial /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3/lh.pial_converted.gii 190722-23:08:02,574 nipype.workflow INFO: [Node] Running "_fs_2_gii2" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/surf/rh.pial /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2/rh.pial_converted.gii 190722-23:08:02,579 nipype.workflow INFO: [Node] Running "_fs_2_gii5" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/surf/lh.inflated /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5/lh.inflated_converted.gii 190722-23:08:02,580 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:08:03,980 nipype.workflow INFO: [Node] Finished "_fs_2_gii3". 190722-23:08:04,14 nipype.workflow INFO: [Node] Finished "_fs_2_gii1". 190722-23:08:04,26 nipype.workflow INFO: [Node] Finished "_fs_2_gii0". 190722-23:08:04,29 nipype.workflow INFO: [Node] Finished "_fs_2_gii4". 190722-23:08:04,41 nipype.workflow INFO: [Node] Finished "_fs_2_gii5". 190722-23:08:04,87 nipype.workflow INFO: [Node] Finished "_fs_2_gii2". 190722-23:08:05,153 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:08:05,158 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:08:27,877 nipype.interface INFO: stdout 2019-07-22T23:08:27.877503: 190722-23:08:27,877 nipype.interface INFO: stdout 2019-07-22T23:08:27.877503:Matrix from LTA: 190722-23:08:27,877 nipype.interface INFO: stdout 2019-07-22T23:08:27.877503: 0.99930 -0.01723 0.03316 -4.82686; 190722-23:08:27,877 nipype.interface INFO: stdout 2019-07-22T23:08:27.877503:-0.03676 -0.29373 0.95518 -28.53075; 190722-23:08:27,877 nipype.interface INFO: stdout 2019-07-22T23:08:27.877503:-0.00672 -0.95573 -0.29416 -10.77714; 190722-23:08:27,878 nipype.interface INFO: stdout 2019-07-22T23:08:27.877503: 0.00000 0.00000 0.00000 1.00000; 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:invert 0 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:tal 0 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:talres 2 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:regheader 0 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:noresample 0 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:interp nearest (0) 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:precision float (3) 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:Gdiag_no -1 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:Synth 0 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:SynthSeed 1564788435 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:Final tkRAS-to-tkRAS Matrix is: 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 0.99930 -0.01723 0.03316 -4.82689; 190722-23:08:28,14 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:-0.03676 -0.29373 0.95518 -28.53075; 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:-0.00672 -0.95573 -0.29416 -10.77715; 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 0.00000 0.00000 0.00000 1.00000; 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:Vox2Vox Matrix is: 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 0.49965 0.01658 0.00862 -9.76686; 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102:-0.00336 -0.14708 0.47787 18.47754; 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 0.01838 -0.47759 -0.14686 93.31215; 190722-23:08:28,15 nipype.interface INFO: stdout 2019-07-22T23:08:28.014102: 0.00000 0.00000 0.00000 1.00000; 190722-23:08:28,761 nipype.interface INFO: stdout 2019-07-22T23:08:28.761085: 190722-23:08:28,761 nipype.interface INFO: stdout 2019-07-22T23:08:28.761085:Resampling 190722-23:08:28,761 nipype.interface INFO: stdout 2019-07-22T23:08:28.761085:Output registration matrix is identity 190722-23:08:28,761 nipype.interface INFO: stdout 2019-07-22T23:08:28.761085: 190722-23:08:28,761 nipype.interface INFO: stdout 2019-07-22T23:08:28.761085:mri_vol2vol done 190722-23:08:39,516 nipype.interface INFO: stdout 2019-07-22T23:08:39.515933: 190722-23:08:39,516 nipype.interface INFO: stdout 2019-07-22T23:08:39.515933:Matrix from LTA: 190722-23:08:39,516 nipype.interface INFO: stdout 2019-07-22T23:08:39.515933: 0.99880 -0.02097 0.04428 -4.83850; 190722-23:08:39,516 nipype.interface INFO: stdout 2019-07-22T23:08:39.515933:-0.04860 -0.30905 0.94980 -31.39852; 190722-23:08:39,516 nipype.interface INFO: stdout 2019-07-22T23:08:39.515933:-0.00623 -0.95082 -0.30970 -8.86988; 190722-23:08:39,516 nipype.interface INFO: stdout 2019-07-22T23:08:39.515933: 0.00000 0.00000 0.00000 1.00000; 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:invert 0 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:tal 0 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:talres 2 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:regheader 0 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:noresample 0 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:interp nearest (0) 190722-23:08:39,652 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:precision float (3) 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:Gdiag_no -1 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:Synth 0 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:SynthSeed 1564426465 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:Final tkRAS-to-tkRAS Matrix is: 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 0.99880 -0.02097 0.04428 -4.83852; 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:-0.04860 -0.30905 0.94980 -31.39853; 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:-0.00623 -0.95082 -0.30970 -8.86988; 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 0.00000 0.00000 0.00000 1.00000; 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:Vox2Vox Matrix is: 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 0.49940 0.02214 0.01048 -10.68016; 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209:-0.00312 -0.15485 0.47541 18.80208; 190722-23:08:39,653 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 0.02430 -0.47490 -0.15452 91.75678; 190722-23:08:39,654 nipype.interface INFO: stdout 2019-07-22T23:08:39.652209: 0.00000 0.00000 0.00000 1.00000; 190722-23:08:40,404 nipype.interface INFO: stdout 2019-07-22T23:08:40.404851: 190722-23:08:40,405 nipype.interface INFO: stdout 2019-07-22T23:08:40.404851:Resampling 190722-23:08:40,405 nipype.interface INFO: stdout 2019-07-22T23:08:40.404851:Output registration matrix is identity 190722-23:08:40,405 nipype.interface INFO: stdout 2019-07-22T23:08:40.404851: 190722-23:08:40,405 nipype.interface INFO: stdout 2019-07-22T23:08:40.404851:mri_vol2vol done 190722-23:08:43,205 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:08:44,880 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:08:44,883 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:08:44,884 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190722-23:08:44,885 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190722-23:08:44,887 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:08:44,887 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:08:44,887 nipype.workflow INFO: [Node] Running "_fs_2_gii6" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/surf/rh.midthickness /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6/rh.midthickness_converted.gii 190722-23:08:44,888 nipype.workflow INFO: [Node] Running "_fs_2_gii7" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/surf/lh.midthickness /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7/lh.midthickness_converted.gii 190722-23:08:45,2 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:08:46,192 nipype.workflow INFO: [Node] Finished "_fs_2_gii7". 190722-23:08:46,217 nipype.workflow INFO: [Node] Finished "_fs_2_gii6". 190722-23:08:46,618 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:08:46,619 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:08:46,626 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:08:46,627 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:08:46,733 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:08:46,743 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:08:48,557 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:08:48,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii". 190722-23:08:48,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:08:48,570 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:08:48,570 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:08:48,571 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190722-23:08:48,572 nipype.workflow INFO: [Node] Cached "_fs_2_gii0" - collecting precomputed outputs 190722-23:08:48,572 nipype.workflow INFO: [Node] "_fs_2_gii0" found cached. 190722-23:08:48,573 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190722-23:08:48,574 nipype.workflow INFO: [Node] Cached "_fs_2_gii1" - collecting precomputed outputs 190722-23:08:48,574 nipype.workflow INFO: [Node] "_fs_2_gii1" found cached. 190722-23:08:48,575 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190722-23:08:48,576 nipype.workflow INFO: [Node] Cached "_fs_2_gii2" - collecting precomputed outputs 190722-23:08:48,576 nipype.workflow INFO: [Node] "_fs_2_gii2" found cached. 190722-23:08:48,577 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190722-23:08:48,578 nipype.workflow INFO: [Node] Cached "_fs_2_gii3" - collecting precomputed outputs 190722-23:08:48,578 nipype.workflow INFO: [Node] "_fs_2_gii3" found cached. 190722-23:08:48,579 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190722-23:08:48,580 nipype.workflow INFO: [Node] Cached "_fs_2_gii4" - collecting precomputed outputs 190722-23:08:48,580 nipype.workflow INFO: [Node] "_fs_2_gii4" found cached. 190722-23:08:48,581 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190722-23:08:48,582 nipype.workflow INFO: [Node] Cached "_fs_2_gii5" - collecting precomputed outputs 190722-23:08:48,582 nipype.workflow INFO: [Node] "_fs_2_gii5" found cached. 190722-23:08:48,583 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190722-23:08:48,583 nipype.workflow INFO: [Node] Cached "_fs_2_gii6" - collecting precomputed outputs 190722-23:08:48,583 nipype.workflow INFO: [Node] "_fs_2_gii6" found cached. 190722-23:08:48,584 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190722-23:08:48,585 nipype.workflow INFO: [Node] Cached "_fs_2_gii7" - collecting precomputed outputs 190722-23:08:48,585 nipype.workflow INFO: [Node] "_fs_2_gii7" found cached. 190722-23:08:48,590 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii". 190722-23:08:48,955 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:08:48,962 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:08:50,876 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:08:50,881 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/wm_tfm". 190722-23:08:50,898 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/tcc_tfm". 190722-23:08:50,899 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:08:50,900 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/csf_tfm". 190722-23:08:50,902 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:08:50,903 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:08:50,904 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:08:50,910 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/acc_tfm". 190722-23:08:50,916 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:08:51,226 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tcc_tfm". 190722-23:08:51,229 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acc_tfm". 190722-23:08:51,233 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.csf_tfm". 190722-23:08:51,234 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.wm_tfm". 190722-23:08:52,557 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/wm_msk". 190722-23:08:52,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/tcc_msk". 190722-23:08:52,562 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:08:52,562 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:08:52,576 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/csf_msk". 190722-23:08:52,579 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:08:52,589 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/acc_msk". 190722-23:08:52,590 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190722-23:08:52,591 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:08:52,592 nipype.workflow INFO: [Node] Running "_fix_surfs0" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-23:08:52,611 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tcc_msk". 190722-23:08:52,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.wm_msk". 190722-23:08:52,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.csf_msk". 190722-23:08:52,638 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acc_msk". 190722-23:08:52,939 nipype.workflow INFO: [Node] Finished "_fix_surfs0". 190722-23:08:54,552 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/tcompcor". 190722-23:08:54,555 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:08:55,212 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190722-23:08:55,213 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190722-23:08:55,214 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190722-23:08:55,215 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190722-23:08:55,216 nipype.workflow INFO: [Node] Running "_fix_surfs1" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-23:08:55,218 nipype.workflow INFO: [Node] Running "_fix_surfs4" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-23:08:55,218 nipype.workflow INFO: [Node] Running "_fix_surfs2" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-23:08:55,223 nipype.workflow INFO: [Node] Running "_fix_surfs3" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-23:08:55,248 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:08:55,542 nipype.workflow INFO: [Node] Finished "_fix_surfs4". 190722-23:08:55,576 nipype.workflow INFO: [Node] Finished "_fix_surfs3". 190722-23:08:55,576 nipype.workflow INFO: [Node] Finished "_fix_surfs2". 190722-23:08:55,580 nipype.workflow INFO: [Node] Finished "_fix_surfs1". 190722-23:08:56,321 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:08:56,443 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tcompcor". 190722-23:08:56,545 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:08:56,547 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/signals". 190722-23:08:56,548 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:08:56,550 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/acompcor". 190722-23:08:56,550 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:08:56,552 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190722-23:08:56,552 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190722-23:08:56,553 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:08:56,555 nipype.workflow INFO: [Node] Running "_fix_surfs5" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-23:08:56,558 nipype.workflow INFO: [Node] Running "_fix_surfs6" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-23:08:56,910 nipype.workflow INFO: [Node] Finished "_fix_surfs5". 190722-23:08:56,921 nipype.workflow INFO: [Node] Finished "_fix_surfs6". 190722-23:08:57,268 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:08:58,521 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.signals". 190722-23:08:58,528 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acompcor". 190722-23:08:59,249 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:08:59,252 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:08:59,278 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:08:59,571 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190722-23:08:59,574 nipype.workflow INFO: [Node] Running "_fix_surfs7" ("niworkflows.interfaces.surf.NormalizeSurf") 190722-23:08:59,891 nipype.workflow INFO: [Node] Finished "_fix_surfs7". 190722-23:09:00,584 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:09:00,589 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:09:23,852 nipype.interface INFO: stdout 2019-07-22T23:09:23.852498: 190722-23:09:23,852 nipype.interface INFO: stdout 2019-07-22T23:09:23.852498:Matrix from LTA: 190722-23:09:23,852 nipype.interface INFO: stdout 2019-07-22T23:09:23.852498: 0.99954 -0.00079 0.03048 0.70772; 190722-23:09:23,853 nipype.interface INFO: stdout 2019-07-22T23:09:23.852498:-0.02953 -0.27428 0.96120 -22.38622; 190722-23:09:23,853 nipype.interface INFO: stdout 2019-07-22T23:09:23.852498: 0.00760 -0.96165 -0.27417 -13.01158; 190722-23:09:23,853 nipype.interface INFO: stdout 2019-07-22T23:09:23.852498: 0.00000 0.00000 0.00000 1.00000; 190722-23:09:24,0 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 190722-23:09:24,0 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:09:24,0 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:09:24,0 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:09:24,0 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:09:24,0 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:09:24,0 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:invert 0 190722-23:09:24,0 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:tal 0 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:talres 2 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:regheader 0 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:noresample 0 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:interp nearest (0) 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:precision float (3) 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:Gdiag_no -1 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:Synth 0 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:SynthSeed 1564768728 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:Final tkRAS-to-tkRAS Matrix is: 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 0.99954 -0.00079 0.03048 0.70773; 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:-0.02953 -0.27428 0.96120 -22.38622; 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 0.00760 -0.96165 -0.27417 -13.01157; 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 0.00000 0.00000 0.00000 1.00000; 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155:Vox2Vox Matrix is: 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 0.49977 0.01524 0.00040 -11.32546; 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 0.00380 -0.13709 0.48083 17.02089; 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 0.01476 -0.48060 -0.13714 95.98747; 190722-23:09:24,1 nipype.interface INFO: stdout 2019-07-22T23:09:24.000155: 0.00000 0.00000 0.00000 1.00000; 190722-23:09:24,747 nipype.interface INFO: stdout 2019-07-22T23:09:24.747874: 190722-23:09:24,748 nipype.interface INFO: stdout 2019-07-22T23:09:24.747874:Resampling 190722-23:09:24,748 nipype.interface INFO: stdout 2019-07-22T23:09:24.747874:Output registration matrix is identity 190722-23:09:24,748 nipype.interface INFO: stdout 2019-07-22T23:09:24.747874: 190722-23:09:24,748 nipype.interface INFO: stdout 2019-07-22T23:09:24.747874:mri_vol2vol done 190722-23:09:25,309 nipype.interface INFO: stdout 2019-07-22T23:09:25.309322: 190722-23:09:25,309 nipype.interface INFO: stdout 2019-07-22T23:09:25.309322:Matrix from LTA: 190722-23:09:25,309 nipype.interface INFO: stdout 2019-07-22T23:09:25.309322: 0.99932 -0.01840 0.03186 -4.80084; 190722-23:09:25,309 nipype.interface INFO: stdout 2019-07-22T23:09:25.309322:-0.03603 -0.31399 0.94874 -30.73714; 190722-23:09:25,309 nipype.interface INFO: stdout 2019-07-22T23:09:25.309322:-0.00746 -0.94925 -0.31444 -8.67166; 190722-23:09:25,309 nipype.interface INFO: stdout 2019-07-22T23:09:25.309322: 0.00000 0.00000 0.00000 1.00000; 190722-23:09:25,445 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 190722-23:09:25,445 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:09:25,445 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:09:25,445 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:09:25,445 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:invert 0 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:tal 0 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:talres 2 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:regheader 0 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:noresample 0 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:interp nearest (0) 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:precision float (3) 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:Gdiag_no -1 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:Synth 0 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:SynthSeed 1564219689 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:Final tkRAS-to-tkRAS Matrix is: 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 0.99932 -0.01840 0.03186 -4.80083; 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:-0.03603 -0.31399 0.94874 -30.73714; 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:-0.00746 -0.94925 -0.31444 -8.67165; 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 0.00000 0.00000 0.00000 1.00000; 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:Vox2Vox Matrix is: 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 0.49966 0.01593 0.00920 -9.77271; 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221:-0.00373 -0.15722 0.47462 19.18552; 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 0.01801 -0.47437 -0.15700 93.14077; 190722-23:09:25,446 nipype.interface INFO: stdout 2019-07-22T23:09:25.445221: 0.00000 0.00000 0.00000 1.00000; 190722-23:09:26,196 nipype.interface INFO: stdout 2019-07-22T23:09:26.196074: 190722-23:09:26,196 nipype.interface INFO: stdout 2019-07-22T23:09:26.196074:Resampling 190722-23:09:26,196 nipype.interface INFO: stdout 2019-07-22T23:09:26.196074:Output registration matrix is identity 190722-23:09:26,196 nipype.interface INFO: stdout 2019-07-22T23:09:26.196074: 190722-23:09:26,196 nipype.interface INFO: stdout 2019-07-22T23:09:26.196074:mri_vol2vol done 190722-23:09:39,870 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:09:40,609 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:09:40,610 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/rois_plot". 190722-23:09:40,626 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:09:40,627 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:09:40,940 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:09:40,943 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:09:40,993 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:09:41,28 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:09:41,392 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs". 190722-23:09:41,393 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:09:41,396 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190722-23:09:41,397 nipype.workflow INFO: [Node] Cached "_fix_surfs0" - collecting precomputed outputs 190722-23:09:41,397 nipype.workflow INFO: [Node] "_fix_surfs0" found cached. 190722-23:09:41,397 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:09:41,397 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190722-23:09:41,398 nipype.workflow INFO: [Node] Cached "_fix_surfs1" - collecting precomputed outputs 190722-23:09:41,398 nipype.workflow INFO: [Node] "_fix_surfs1" found cached. 190722-23:09:41,399 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190722-23:09:41,400 nipype.workflow INFO: [Node] Cached "_fix_surfs2" - collecting precomputed outputs 190722-23:09:41,400 nipype.workflow INFO: [Node] "_fix_surfs2" found cached. 190722-23:09:41,400 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190722-23:09:41,401 nipype.workflow INFO: [Node] Cached "_fix_surfs3" - collecting precomputed outputs 190722-23:09:41,401 nipype.workflow INFO: [Node] "_fix_surfs3" found cached. 190722-23:09:41,402 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190722-23:09:41,402 nipype.workflow INFO: [Node] Cached "_fix_surfs4" - collecting precomputed outputs 190722-23:09:41,402 nipype.workflow INFO: [Node] "_fix_surfs4" found cached. 190722-23:09:41,403 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190722-23:09:41,404 nipype.workflow INFO: [Node] Cached "_fix_surfs5" - collecting precomputed outputs 190722-23:09:41,404 nipype.workflow INFO: [Node] "_fix_surfs5" found cached. 190722-23:09:41,404 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190722-23:09:41,405 nipype.workflow INFO: [Node] Cached "_fix_surfs6" - collecting precomputed outputs 190722-23:09:41,405 nipype.workflow INFO: [Node] "_fix_surfs6" found cached. 190722-23:09:41,406 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190722-23:09:41,406 nipype.workflow INFO: [Node] Cached "_fix_surfs7" - collecting precomputed outputs 190722-23:09:41,406 nipype.workflow INFO: [Node] "_fix_surfs7" found cached. 190722-23:09:41,407 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:09:41,410 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:09:41,411 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs". 190722-23:09:41,504 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:09:41,527 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:09:42,590 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:09:42,594 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:09:42,595 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:09:42,595 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:09:42,596 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:09:42,597 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:09:42,597 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:09:42,599 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:09:43,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/compcor_plot". 190722-23:09:43,254 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:09:43,601 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.compcor_plot". 190722-23:09:43,797 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/conf_corr_plot". 190722-23:09:43,799 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:09:43,801 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/model_expansion". 190722-23:09:43,803 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:09:43,904 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.model_expansion". 190722-23:09:44,598 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:09:44,602 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:09:44,615 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:09:45,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_confounds_wf/spike_regressors". 190722-23:09:45,473 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:09:45,584 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.spike_regressors". 190722-23:09:47,275 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.conf_corr_plot". 190722-23:09:49,497 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_confounds_wf.rois_plot". 190722-23:09:51,109 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:09:51,110 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:09:51,113 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:09:51,114 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:09:51,220 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:09:51,249 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:09:51,918 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:09:51,941 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:09:52,48 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:09:53,588 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:09:53,591 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:09:53,592 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:09:53,594 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:09:53,596 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:09:53,598 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:09:53,599 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:09:53,599 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:09:53,600 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:09:53,601 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:09:53,601 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:09:53,604 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:09:53,690 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:09:53,696 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:09:57,132 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:09:57,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:09:57,134 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:09:57,136 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:09:57,137 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:09:57,139 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:09:57,148 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:09:57,496 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:09:57,550 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:09:59,802 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:09:59,808 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:10:14,7 nipype.interface INFO: stdout 2019-07-22T23:10:14.007475: 190722-23:10:14,7 nipype.interface INFO: stdout 2019-07-22T23:10:14.007475:Matrix from LTA: 190722-23:10:14,7 nipype.interface INFO: stdout 2019-07-22T23:10:14.007475: 0.99952 -0.00442 0.03080 0.55527; 190722-23:10:14,7 nipype.interface INFO: stdout 2019-07-22T23:10:14.007475:-0.03071 -0.29845 0.95393 -24.49869; 190722-23:10:14,7 nipype.interface INFO: stdout 2019-07-22T23:10:14.007475: 0.00498 -0.95442 -0.29844 -11.00875; 190722-23:10:14,7 nipype.interface INFO: stdout 2019-07-22T23:10:14.007475: 0.00000 0.00000 0.00000 1.00000; 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:invert 0 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:tal 0 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:talres 2 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:regheader 0 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:noresample 0 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:interp nearest (0) 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:precision float (3) 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:Gdiag_no -1 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:Synth 0 190722-23:10:14,145 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:SynthSeed 1563918575 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:Final tkRAS-to-tkRAS Matrix is: 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 0.99952 -0.00442 0.03080 0.55527; 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:-0.03071 -0.29845 0.95393 -24.49869; 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 0.00498 -0.95442 -0.29844 -11.00874; 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 0.00000 0.00000 0.00000 1.00000; 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980:Vox2Vox Matrix is: 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 0.49976 0.01540 0.00221 -11.50054; 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 0.00249 -0.14922 0.47721 18.20325; 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 0.01536 -0.47697 -0.14922 95.93724; 190722-23:10:14,146 nipype.interface INFO: stdout 2019-07-22T23:10:14.144980: 0.00000 0.00000 0.00000 1.00000; 190722-23:10:14,893 nipype.interface INFO: stdout 2019-07-22T23:10:14.893639: 190722-23:10:14,893 nipype.interface INFO: stdout 2019-07-22T23:10:14.893639:Resampling 190722-23:10:14,893 nipype.interface INFO: stdout 2019-07-22T23:10:14.893639:Output registration matrix is identity 190722-23:10:14,893 nipype.interface INFO: stdout 2019-07-22T23:10:14.893639: 190722-23:10:14,893 nipype.interface INFO: stdout 2019-07-22T23:10:14.893639:mri_vol2vol done 190722-23:10:21,623 nipype.interface INFO: stdout 2019-07-22T23:10:21.623756: 190722-23:10:21,624 nipype.interface INFO: stdout 2019-07-22T23:10:21.623756:Matrix from LTA: 190722-23:10:21,624 nipype.interface INFO: stdout 2019-07-22T23:10:21.623756: 0.99960 0.01148 0.02576 1.21451; 190722-23:10:21,624 nipype.interface INFO: stdout 2019-07-22T23:10:21.623756:-0.02176 -0.26720 0.96340 -22.20290; 190722-23:10:21,624 nipype.interface INFO: stdout 2019-07-22T23:10:21.623756: 0.01794 -0.96357 -0.26684 -13.20337; 190722-23:10:21,624 nipype.interface INFO: stdout 2019-07-22T23:10:21.623756: 0.00000 0.00000 0.00000 1.00000; 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:invert 0 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:tal 0 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:talres 2 190722-23:10:21,760 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:regheader 0 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:noresample 0 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:interp nearest (0) 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:precision float (3) 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:Gdiag_no -1 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:Synth 0 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:SynthSeed 1564534529 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:Final tkRAS-to-tkRAS Matrix is: 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 0.99960 0.01148 0.02576 1.21452; 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:-0.02176 -0.26720 0.96340 -22.20290; 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 0.01794 -0.96357 -0.26684 -13.20335; 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 0.00000 0.00000 0.00000 1.00000; 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999:Vox2Vox Matrix is: 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 0.49980 0.01288 -0.00574 -10.49616; 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 0.00897 -0.13342 0.48179 15.86296; 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 0.01088 -0.48170 -0.13360 96.26392; 190722-23:10:21,761 nipype.interface INFO: stdout 2019-07-22T23:10:21.759999: 0.00000 0.00000 0.00000 1.00000; 190722-23:10:22,505 nipype.interface INFO: stdout 2019-07-22T23:10:22.505362: 190722-23:10:22,505 nipype.interface INFO: stdout 2019-07-22T23:10:22.505362:Resampling 190722-23:10:22,505 nipype.interface INFO: stdout 2019-07-22T23:10:22.505362:Output registration matrix is identity 190722-23:10:22,505 nipype.interface INFO: stdout 2019-07-22T23:10:22.505362: 190722-23:10:22,505 nipype.interface INFO: stdout 2019-07-22T23:10:22.505362:mri_vol2vol done 190722-23:10:30,539 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:10:31,785 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:10:31,790 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:10:31,950 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:10:33,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:10:33,314 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:10:33,403 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:10:35,317 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:10:35,320 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:10:35,414 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:10:37,203 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:10:39,22 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:10:39,28 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:10:39,556 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:10:39,558 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:10:39,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:10:39,560 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:10:39,561 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:39,565 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:10:39,566 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/wm_tfm". 190722-23:10:39,568 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/tcc_tfm". 190722-23:10:39,570 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:39,571 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/csf_tfm". 190722-23:10:39,573 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/acc_tfm". 190722-23:10:39,573 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:39,640 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:39,642 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:39,855 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tcc_tfm". 190722-23:10:39,865 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.wm_tfm". 190722-23:10:39,891 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.csf_tfm". 190722-23:10:39,922 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acc_tfm". 190722-23:10:39,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:10:39,948 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:10:41,699 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:10:41,700 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/wm_msk". 190722-23:10:41,702 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/tcc_msk". 190722-23:10:41,703 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:10:41,703 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:10:41,703 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/csf_msk". 190722-23:10:41,705 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/acc_msk". 190722-23:10:41,706 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:10:41,706 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:10:41,707 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:10:41,712 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/wm_tfm". 190722-23:10:41,716 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:41,751 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acc_msk". 190722-23:10:41,751 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tcc_msk". 190722-23:10:41,751 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.wm_msk". 190722-23:10:41,753 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.csf_msk". 190722-23:10:41,998 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.wm_tfm". 190722-23:10:43,357 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:10:43,378 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/tcompcor". 190722-23:10:43,381 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:10:43,891 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tcompcor". 190722-23:10:44,44 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/wm_msk". 190722-23:10:44,47 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/tcc_tfm". 190722-23:10:44,49 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/csf_tfm". 190722-23:10:44,50 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:44,51 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/acc_tfm". 190722-23:10:44,52 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:44,55 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:10:44,77 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:10:44,123 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.wm_msk". 190722-23:10:44,299 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.csf_tfm". 190722-23:10:44,317 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tcc_tfm". 190722-23:10:44,335 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acc_tfm". 190722-23:10:45,360 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:10:45,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:10:45,363 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/signals". 190722-23:10:45,364 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:10:45,364 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:10:45,366 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:10:45,404 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:10:45,697 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/acompcor". 190722-23:10:45,698 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/tcc_msk". 190722-23:10:45,700 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/csf_msk". 190722-23:10:45,700 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:10:45,701 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:10:45,704 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:10:45,747 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.csf_msk". 190722-23:10:45,751 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tcc_msk". 190722-23:10:45,821 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.signals". 190722-23:10:46,31 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:10:46,90 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acompcor". 190722-23:10:46,183 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:10:47,388 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:10:47,392 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:11:09,819 nipype.interface INFO: stdout 2019-07-22T23:11:09.819503: 190722-23:11:09,819 nipype.interface INFO: stdout 2019-07-22T23:11:09.819503:Matrix from LTA: 190722-23:11:09,819 nipype.interface INFO: stdout 2019-07-22T23:11:09.819503: 0.99834 0.01681 0.05512 1.45868; 190722-23:11:09,819 nipype.interface INFO: stdout 2019-07-22T23:11:09.819503:-0.04776 -0.29384 0.95466 -22.66115; 190722-23:11:09,820 nipype.interface INFO: stdout 2019-07-22T23:11:09.819503: 0.03224 -0.95571 -0.29255 -12.29184; 190722-23:11:09,820 nipype.interface INFO: stdout 2019-07-22T23:11:09.819503: 0.00000 0.00000 0.00000 1.00000; 190722-23:11:09,956 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 190722-23:11:09,956 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:invert 0 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:tal 0 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:talres 2 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:regheader 0 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:noresample 0 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:interp nearest (0) 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:precision float (3) 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:Gdiag_no -1 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:Synth 0 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:SynthSeed 1564730852 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:Final tkRAS-to-tkRAS Matrix is: 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 0.99834 0.01681 0.05512 1.45865; 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:-0.04776 -0.29384 0.95466 -22.66116; 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 0.03224 -0.95571 -0.29255 -12.29184; 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 0.00000 0.00000 0.00000 1.00000; 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750:Vox2Vox Matrix is: 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 0.49917 0.02756 -0.00840 -12.07507; 190722-23:11:09,957 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 0.01612 -0.14628 0.47785 16.64030; 190722-23:11:09,958 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 0.02388 -0.47733 -0.14692 95.51665; 190722-23:11:09,958 nipype.interface INFO: stdout 2019-07-22T23:11:09.956750: 0.00000 0.00000 0.00000 1.00000; 190722-23:11:10,704 nipype.interface INFO: stdout 2019-07-22T23:11:10.704809: 190722-23:11:10,705 nipype.interface INFO: stdout 2019-07-22T23:11:10.704809:Resampling 190722-23:11:10,705 nipype.interface INFO: stdout 2019-07-22T23:11:10.704809:Output registration matrix is identity 190722-23:11:10,721 nipype.interface INFO: stdout 2019-07-22T23:11:10.704809: 190722-23:11:10,721 nipype.interface INFO: stdout 2019-07-22T23:11:10.704809:mri_vol2vol done 190722-23:11:15,37 nipype.interface INFO: stdout 2019-07-22T23:11:15.037676: 190722-23:11:15,38 nipype.interface INFO: stdout 2019-07-22T23:11:15.037676:Matrix from LTA: 190722-23:11:15,38 nipype.interface INFO: stdout 2019-07-22T23:11:15.037676: 0.99967 0.00776 0.02432 1.05376; 190722-23:11:15,38 nipype.interface INFO: stdout 2019-07-22T23:11:15.037676:-0.02105 -0.28841 0.95728 -24.23367; 190722-23:11:15,38 nipype.interface INFO: stdout 2019-07-22T23:11:15.037676: 0.01444 -0.95748 -0.28815 -11.08449; 190722-23:11:15,38 nipype.interface INFO: stdout 2019-07-22T23:11:15.037676: 0.00000 0.00000 0.00000 1.00000; 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:invert 0 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:tal 0 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:talres 2 190722-23:11:15,174 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:regheader 0 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:noresample 0 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:interp nearest (0) 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:precision float (3) 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:Gdiag_no -1 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:Synth 0 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:SynthSeed 1563948344 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:Final tkRAS-to-tkRAS Matrix is: 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 0.99967 0.00776 0.02432 1.05373; 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:-0.02105 -0.28841 0.95728 -24.23369; 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 0.01444 -0.95748 -0.28815 -11.08449; 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 0.00000 0.00000 0.00000 1.00000; 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373:Vox2Vox Matrix is: 190722-23:11:15,175 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 0.49984 0.01216 -0.00388 -10.56567; 190722-23:11:15,176 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 0.00722 -0.14408 0.47874 16.78157; 190722-23:11:15,176 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 0.01052 -0.47864 -0.14421 96.26017; 190722-23:11:15,176 nipype.interface INFO: stdout 2019-07-22T23:11:15.174373: 0.00000 0.00000 0.00000 1.00000; 190722-23:11:15,952 nipype.interface INFO: stdout 2019-07-22T23:11:15.952720: 190722-23:11:15,952 nipype.interface INFO: stdout 2019-07-22T23:11:15.952720:Resampling 190722-23:11:15,952 nipype.interface INFO: stdout 2019-07-22T23:11:15.952720:Output registration matrix is identity 190722-23:11:15,953 nipype.interface INFO: stdout 2019-07-22T23:11:15.952720: 190722-23:11:15,953 nipype.interface INFO: stdout 2019-07-22T23:11:15.952720:mri_vol2vol done 190722-23:11:26,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:11:27,563 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:11:27,565 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:11:27,567 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/rois_plot". 190722-23:11:27,568 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:11:27,570 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:11:27,571 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:11:27,947 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:11:27,949 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:11:27,982 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:11:28,255 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:11:28,479 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/tcompcor". 190722-23:11:28,482 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:11:28,854 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/acc_msk". 190722-23:11:28,856 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:11:28,856 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:28,860 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:11:28,904 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acc_msk". 190722-23:11:28,965 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:11:29,463 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/compcor_plot". 190722-23:11:29,469 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:11:29,823 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.compcor_plot". 190722-23:11:29,882 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/conf_corr_plot". 190722-23:11:29,883 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/model_expansion". 190722-23:11:29,886 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:11:29,886 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/signals". 190722-23:11:29,887 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:11:29,889 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:11:29,923 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.model_expansion". 190722-23:11:31,234 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:11:31,654 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.conf_corr_plot". 190722-23:11:32,206 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_confounds_wf/spike_regressors". 190722-23:11:32,208 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:11:32,223 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.spike_regressors". 190722-23:11:32,574 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:11:32,577 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:11:32,695 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:11:33,426 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:11:33,430 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:11:33,431 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:11:33,431 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:11:33,432 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:11:33,433 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:11:33,433 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:11:33,618 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:11:35,191 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/acompcor". 190722-23:11:35,195 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:11:35,556 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:11:35,559 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:35,564 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:11:35,980 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_confounds_wf.rois_plot". 190722-23:11:38,572 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:11:38,573 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:11:38,576 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:11:38,576 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:11:38,685 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:11:38,706 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:11:39,918 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:11:39,920 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:11:39,921 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:11:39,924 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:11:39,924 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:11:39,925 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:11:39,925 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:11:39,926 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:11:39,926 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:11:39,929 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:11:40,34 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:11:41,556 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:11:41,558 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:11:41,559 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:11:41,561 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:11:41,633 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:11:41,634 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:41,648 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:11:41,678 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:11:41,735 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:11:44,310 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:11:44,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:11:44,314 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:44,314 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:11:44,672 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:11:44,672 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:11:45,254 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tcompcor". 190722-23:11:45,872 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:11:45,876 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:11:46,142 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:11:46,284 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:11:46,288 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:11:46,291 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/wm_tfm". 190722-23:11:46,294 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/tcc_tfm". 190722-23:11:46,295 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:46,297 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:46,583 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tcc_tfm". 190722-23:11:46,595 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.wm_tfm". 190722-23:11:47,513 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.signals". 190722-23:11:47,604 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:11:47,606 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:11:47,607 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:11:47,609 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:11:47,609 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:11:47,611 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:11:47,708 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:11:47,789 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:11:47,800 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:11:47,994 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/wm_msk". 190722-23:11:47,997 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:48,44 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.wm_msk". 190722-23:11:49,566 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:11:49,568 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:11:49,569 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:49,571 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:11:49,572 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/rois_plot". 190722-23:11:49,573 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/tcc_msk". 190722-23:11:49,575 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/csf_tfm". 190722-23:11:49,576 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:49,576 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:11:49,579 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:49,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tcc_msk". 190722-23:11:49,826 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.csf_tfm". 190722-23:11:49,926 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:11:49,950 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:11:50,910 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:11:51,630 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:11:51,634 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:11:52,151 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:11:52,154 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:11:52,191 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/tcompcor". 190722-23:11:52,193 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/csf_msk". 190722-23:11:52,194 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:11:52,195 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:52,196 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/acc_tfm". 190722-23:11:52,199 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:52,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.csf_msk". 190722-23:11:52,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:11:52,489 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acc_tfm". 190722-23:11:53,930 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/acc_msk". 190722-23:11:53,933 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:53,941 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/wm_tfm". 190722-23:11:53,947 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/tcc_tfm". 190722-23:11:53,947 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:53,950 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:53,980 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acc_msk". 190722-23:11:54,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.wm_tfm". 190722-23:11:54,281 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tcc_tfm". 190722-23:11:55,562 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/signals". 190722-23:11:55,567 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:11:55,929 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/wm_msk". 190722-23:11:55,930 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/tcc_msk". 190722-23:11:55,932 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:55,934 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:11:55,979 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.wm_msk". 190722-23:11:55,983 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tcc_msk". 190722-23:11:56,819 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:11:57,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:11:57,559 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/acompcor". 190722-23:11:57,562 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:11:57,564 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:11:57,578 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/tcompcor". 190722-23:11:57,581 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:11:58,257 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:11:59,563 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/csf_tfm". 190722-23:11:59,566 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:11:59,886 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.csf_tfm". 190722-23:12:00,15 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tcompcor". 190722-23:12:01,357 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acompcor". 190722-23:12:01,640 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:12:01,644 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:12:01,736 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:12:02,141 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/csf_msk". 190722-23:12:02,144 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:12:02,185 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.csf_msk". 190722-23:12:04,270 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:12:04,275 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:12:04,907 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.signals". 190722-23:12:04,996 nipype.interface INFO: stdout 2019-07-22T23:12:04.996867: 190722-23:12:04,997 nipype.interface INFO: stdout 2019-07-22T23:12:04.996867:Matrix from LTA: 190722-23:12:04,997 nipype.interface INFO: stdout 2019-07-22T23:12:04.996867: 0.99840 0.01307 0.05496 1.22212; 190722-23:12:04,997 nipype.interface INFO: stdout 2019-07-22T23:12:04.996867:-0.04805 -0.31516 0.94782 -24.56425; 190722-23:12:04,997 nipype.interface INFO: stdout 2019-07-22T23:12:04.996867: 0.02971 -0.94895 -0.31403 -10.30114; 190722-23:12:04,997 nipype.interface INFO: stdout 2019-07-22T23:12:04.996867: 0.00000 0.00000 0.00000 1.00000; 190722-23:12:05,56 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:invert 0 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:tal 0 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:talres 2 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:regheader 0 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:noresample 0 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:interp nearest (0) 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:precision float (3) 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:Gdiag_no -1 190722-23:12:05,181 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:Synth 0 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:SynthSeed 1563954256 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:Final tkRAS-to-tkRAS Matrix is: 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 0.99840 0.01307 0.05496 1.22212; 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:-0.04805 -0.31516 0.94782 -24.56424; 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 0.02971 -0.94895 -0.31403 -10.30115; 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 0.00000 0.00000 0.00000 1.00000; 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047:Vox2Vox Matrix is: 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 0.49920 0.02748 -0.00654 -12.18954; 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 0.01486 -0.15702 0.47447 17.61433; 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 0.02402 -0.47391 -0.15758 95.47375; 190722-23:12:05,183 nipype.interface INFO: stdout 2019-07-22T23:12:05.181047: 0.00000 0.00000 0.00000 1.00000; 190722-23:12:05,968 nipype.interface INFO: stdout 2019-07-22T23:12:05.968489: 190722-23:12:05,968 nipype.interface INFO: stdout 2019-07-22T23:12:05.968489:Resampling 190722-23:12:05,968 nipype.interface INFO: stdout 2019-07-22T23:12:05.968489:Output registration matrix is identity 190722-23:12:05,968 nipype.interface INFO: stdout 2019-07-22T23:12:05.968489: 190722-23:12:05,968 nipype.interface INFO: stdout 2019-07-22T23:12:05.968489:mri_vol2vol done 190722-23:12:07,628 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/rois_plot". 190722-23:12:07,631 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:12:07,990 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/acc_tfm". 190722-23:12:07,993 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:12:08,217 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acompcor". 190722-23:12:08,261 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acc_tfm". 190722-23:12:08,355 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/compcor_plot". 190722-23:12:08,359 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:12:08,753 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.compcor_plot". 190722-23:12:10,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/conf_corr_plot". 190722-23:12:10,939 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:12:12,906 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.rois_plot". 190722-23:12:14,8 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tcompcor". 190722-23:12:14,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/model_expansion". 190722-23:12:14,165 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:12:14,615 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:12:14,618 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:12:14,918 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:12:15,953 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/signals". 190722-23:12:15,955 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:12:16,53 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.model_expansion". 190722-23:12:16,127 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.conf_corr_plot". 190722-23:12:16,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/compcor_plot". 190722-23:12:16,794 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:12:17,184 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.compcor_plot". 190722-23:12:18,202 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/conf_corr_plot". 190722-23:12:18,205 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:12:18,209 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/model_expansion". 190722-23:12:18,454 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:12:18,916 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_confounds_wf/spike_regressors". 190722-23:12:18,919 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:12:19,264 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.model_expansion". 190722-23:12:20,715 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:12:20,717 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/acc_msk". 190722-23:12:20,718 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:12:20,720 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:12:20,766 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acc_msk". 190722-23:12:20,863 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:12:20,978 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_confounds_wf.spike_regressors". 190722-23:12:21,77 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_confounds_wf/spike_regressors". 190722-23:12:21,79 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:12:21,422 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:12:21,693 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.spike_regressors". 190722-23:12:21,929 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.conf_corr_plot". 190722-23:12:23,208 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_confounds_wf.rois_plot". 190722-23:12:28,582 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:12:28,587 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:12:33,633 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.signals". 190722-23:12:35,633 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/rois_plot". 190722-23:12:35,636 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:12:53,841 nipype.interface INFO: stdout 2019-07-22T23:12:53.841294: 190722-23:12:53,841 nipype.interface INFO: stdout 2019-07-22T23:12:53.841294:Matrix from LTA: 190722-23:12:53,841 nipype.interface INFO: stdout 2019-07-22T23:12:53.841294: 0.99924 -0.01112 0.03734 0.72606; 190722-23:12:53,841 nipype.interface INFO: stdout 2019-07-22T23:12:53.841294:-0.03895 -0.29892 0.95348 -22.68481; 190722-23:12:53,841 nipype.interface INFO: stdout 2019-07-22T23:12:53.841294: 0.00056 -0.95421 -0.29912 -9.14783; 190722-23:12:53,841 nipype.interface INFO: stdout 2019-07-22T23:12:53.841294: 0.00000 0.00000 0.00000 1.00000; 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:invert 0 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:tal 0 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:talres 2 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:regheader 0 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:noresample 0 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:interp nearest (0) 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:precision float (3) 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:Gdiag_no -1 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:Synth 0 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:SynthSeed 1564752558 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:Final tkRAS-to-tkRAS Matrix is: 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 0.99924 -0.01112 0.03734 0.72604; 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:-0.03895 -0.29892 0.95348 -22.68483; 190722-23:12:53,978 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 0.00056 -0.95421 -0.29912 -9.14784; 190722-23:12:53,979 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 0.00000 0.00000 0.00000 1.00000; 190722-23:12:53,979 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 190722-23:12:53,979 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 190722-23:12:53,979 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962:Vox2Vox Matrix is: 190722-23:12:53,979 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 0.49962 0.01867 0.00556 -12.41550; 190722-23:12:53,979 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 0.00028 -0.14956 0.47711 17.61207; 190722-23:12:53,979 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 0.01948 -0.47674 -0.14946 96.31817; 190722-23:12:53,979 nipype.interface INFO: stdout 2019-07-22T23:12:53.977962: 0.00000 0.00000 0.00000 1.00000; 190722-23:12:54,730 nipype.interface INFO: stdout 2019-07-22T23:12:54.729965: 190722-23:12:54,730 nipype.interface INFO: stdout 2019-07-22T23:12:54.729965:Resampling 190722-23:12:54,730 nipype.interface INFO: stdout 2019-07-22T23:12:54.729965:Output registration matrix is identity 190722-23:12:54,730 nipype.interface INFO: stdout 2019-07-22T23:12:54.729965: 190722-23:12:54,730 nipype.interface INFO: stdout 2019-07-22T23:12:54.729965:mri_vol2vol done 190722-23:12:57,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.rois_plot". 190722-23:12:59,181 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/acompcor". 190722-23:12:59,185 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:13:09,826 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:13:10,630 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:13:10,631 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:13:10,631 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:13:10,637 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:13:10,644 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:13:10,648 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:13:10,776 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:13:10,777 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:13:12,606 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:13:12,610 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:13:12,611 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:13:12,611 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:13:12,612 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:13:12,612 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:13:12,612 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:13:12,615 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:13:14,620 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:13:14,622 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:13:14,628 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:13:18,966 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:13:18,970 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:13:19,83 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:13:20,675 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:13:20,676 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:13:20,679 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:13:20,680 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:13:20,781 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:13:20,785 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:13:22,553 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acompcor". 190722-23:13:22,632 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:13:22,634 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:13:22,637 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:13:22,637 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:13:23,15 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:13:23,28 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:13:24,769 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:13:24,774 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:13:39,293 nipype.interface INFO: stdout 2019-07-22T23:13:39.293726: 190722-23:13:39,294 nipype.interface INFO: stdout 2019-07-22T23:13:39.293726:Matrix from LTA: 190722-23:13:39,294 nipype.interface INFO: stdout 2019-07-22T23:13:39.293726: 0.99930 -0.00535 0.03692 0.88268; 190722-23:13:39,294 nipype.interface INFO: stdout 2019-07-22T23:13:39.293726:-0.03667 -0.32213 0.94598 -24.60117; 190722-23:13:39,294 nipype.interface INFO: stdout 2019-07-22T23:13:39.293726: 0.00683 -0.94668 -0.32210 -7.31631; 190722-23:13:39,294 nipype.interface INFO: stdout 2019-07-22T23:13:39.293726: 0.00000 0.00000 0.00000 1.00000; 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:invert 0 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:tal 0 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:talres 2 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:regheader 0 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:noresample 0 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:interp nearest (0) 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:precision float (3) 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:Gdiag_no -1 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:Synth 0 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:SynthSeed 1564205039 190722-23:13:39,431 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:Final tkRAS-to-tkRAS Matrix is: 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 0.99930 -0.00535 0.03692 0.88266; 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:-0.03667 -0.32213 0.94598 -24.60117; 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 0.00683 -0.94668 -0.32210 -7.31630; 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 0.00000 0.00000 0.00000 1.00000; 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199:Vox2Vox Matrix is: 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 0.49965 0.01846 0.00267 -12.10172; 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 0.00342 -0.16105 0.47334 18.24805; 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 0.01834 -0.47299 -0.16107 96.51192; 190722-23:13:39,432 nipype.interface INFO: stdout 2019-07-22T23:13:39.431199: 0.00000 0.00000 0.00000 1.00000; 190722-23:13:40,181 nipype.interface INFO: stdout 2019-07-22T23:13:40.180925: 190722-23:13:40,181 nipype.interface INFO: stdout 2019-07-22T23:13:40.180925:Resampling 190722-23:13:40,181 nipype.interface INFO: stdout 2019-07-22T23:13:40.180925:Output registration matrix is identity 190722-23:13:40,181 nipype.interface INFO: stdout 2019-07-22T23:13:40.180925: 190722-23:13:40,181 nipype.interface INFO: stdout 2019-07-22T23:13:40.180925:mri_vol2vol done 190722-23:13:46,816 nipype.interface INFO: stdout 2019-07-22T23:13:46.815945: 190722-23:13:46,816 nipype.interface INFO: stdout 2019-07-22T23:13:46.815945:Matrix from LTA: 190722-23:13:46,816 nipype.interface INFO: stdout 2019-07-22T23:13:46.815945: 0.99902 0.00362 0.04415 1.46384; 190722-23:13:46,816 nipype.interface INFO: stdout 2019-07-22T23:13:46.815945:-0.04091 -0.30691 0.95086 -20.59460; 190722-23:13:46,816 nipype.interface INFO: stdout 2019-07-22T23:13:46.815945: 0.01699 -0.95173 -0.30646 -9.69867; 190722-23:13:46,816 nipype.interface INFO: stdout 2019-07-22T23:13:46.815945: 0.00000 0.00000 0.00000 1.00000; 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:invert 0 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:tal 0 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:talres 2 190722-23:13:46,953 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:regheader 0 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:noresample 0 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:interp nearest (0) 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:precision float (3) 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:Gdiag_no -1 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:Synth 0 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:SynthSeed 1564727626 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:Final tkRAS-to-tkRAS Matrix is: 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 0.99902 0.00362 0.04415 1.46382; 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:-0.04091 -0.30691 0.95086 -20.59460; 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 0.01699 -0.95173 -0.30646 -9.69865; 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 0.00000 0.00000 0.00000 1.00000; 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398:Vox2Vox Matrix is: 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 0.49951 0.02207 -0.00181 -12.26305; 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 0.00849 -0.15323 0.47587 17.46444; 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 0.02045 -0.47543 -0.15345 97.58160; 190722-23:13:46,954 nipype.interface INFO: stdout 2019-07-22T23:13:46.953398: 0.00000 0.00000 0.00000 1.00000; 190722-23:13:47,700 nipype.interface INFO: stdout 2019-07-22T23:13:47.700479: 190722-23:13:47,700 nipype.interface INFO: stdout 2019-07-22T23:13:47.700479:Resampling 190722-23:13:47,700 nipype.interface INFO: stdout 2019-07-22T23:13:47.700479:Output registration matrix is identity 190722-23:13:47,700 nipype.interface INFO: stdout 2019-07-22T23:13:47.700479: 190722-23:13:47,700 nipype.interface INFO: stdout 2019-07-22T23:13:47.700479:mri_vol2vol done 190722-23:13:55,361 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:13:57,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:13:57,985 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:14:02,181 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:14:02,286 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:14:02,718 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:14:02,722 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:14:02,724 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:14:02,728 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:14:24,319 nipype.interface INFO: stdout 2019-07-22T23:14:24.319046: 190722-23:14:24,319 nipype.interface INFO: stdout 2019-07-22T23:14:24.319046:Matrix from LTA: 190722-23:14:24,319 nipype.interface INFO: stdout 2019-07-22T23:14:24.319046: 0.99981 -0.01657 0.00987 0.69772; 190722-23:14:24,319 nipype.interface INFO: stdout 2019-07-22T23:14:24.319046:-0.01504 -0.34938 0.93686 -21.70308; 190722-23:14:24,319 nipype.interface INFO: stdout 2019-07-22T23:14:24.319046:-0.01208 -0.93683 -0.34957 -9.96956; 190722-23:14:24,319 nipype.interface INFO: stdout 2019-07-22T23:14:24.319046: 0.00000 0.00000 0.00000 1.00000; 190722-23:14:24,456 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 190722-23:14:24,456 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:14:24,456 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:14:24,456 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:14:24,456 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:14:24,456 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:invert 0 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:tal 0 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:talres 2 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:regheader 0 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:noresample 0 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:interp nearest (0) 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:precision float (3) 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:Gdiag_no -1 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:Synth 0 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:SynthSeed 1564230786 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:Final tkRAS-to-tkRAS Matrix is: 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 0.99981 -0.01657 0.00987 0.69771; 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:-0.01504 -0.34938 0.93686 -21.70308; 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:-0.01208 -0.93683 -0.34957 -9.96957; 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 0.00000 0.00000 0.00000 1.00000; 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:Vox2Vox Matrix is: 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 0.49991 0.00494 0.00829 -11.02955; 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333:-0.00604 -0.17478 0.46842 23.17261; 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 0.00752 -0.46843 -0.17469 100.50517; 190722-23:14:24,457 nipype.interface INFO: stdout 2019-07-22T23:14:24.456333: 0.00000 0.00000 0.00000 1.00000; 190722-23:14:25,201 nipype.interface INFO: stdout 2019-07-22T23:14:25.200950: 190722-23:14:25,201 nipype.interface INFO: stdout 2019-07-22T23:14:25.200950:Resampling 190722-23:14:25,201 nipype.interface INFO: stdout 2019-07-22T23:14:25.200950:Output registration matrix is identity 190722-23:14:25,201 nipype.interface INFO: stdout 2019-07-22T23:14:25.200950: 190722-23:14:25,201 nipype.interface INFO: stdout 2019-07-22T23:14:25.200950:mri_vol2vol done 190722-23:14:39,679 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:14:40,708 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:14:40,709 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:14:40,713 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:14:40,715 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:14:41,76 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:14:41,79 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:14:41,389 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:14:41,690 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:14:43,217 nipype.interface INFO: stdout 2019-07-22T23:14:43.217096: 190722-23:14:43,217 nipype.interface INFO: stdout 2019-07-22T23:14:43.217096:Matrix from LTA: 190722-23:14:43,217 nipype.interface INFO: stdout 2019-07-22T23:14:43.217096: 0.99897 0.00793 0.04472 1.49678; 190722-23:14:43,217 nipype.interface INFO: stdout 2019-07-22T23:14:43.217096:-0.03974 -0.32389 0.94526 -22.31094; 190722-23:14:43,217 nipype.interface INFO: stdout 2019-07-22T23:14:43.217096: 0.02198 -0.94606 -0.32324 -7.65954; 190722-23:14:43,217 nipype.interface INFO: stdout 2019-07-22T23:14:43.217096: 0.00000 0.00000 0.00000 1.00000; 190722-23:14:43,356 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 190722-23:14:43,356 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:14:43,356 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:14:43,356 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:14:43,356 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:14:43,356 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:invert 0 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:tal 0 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:talres 2 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:regheader 0 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:noresample 0 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:interp nearest (0) 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:precision float (3) 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:Gdiag_no -1 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:Synth 0 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:SynthSeed 1564129024 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:Final tkRAS-to-tkRAS Matrix is: 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 0.99897 0.00793 0.04472 1.49680; 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:-0.03974 -0.32389 0.94526 -22.31093; 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 0.02198 -0.94606 -0.32324 -7.65955; 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 0.00000 0.00000 0.00000 1.00000; 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 190722-23:14:43,357 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200:Vox2Vox Matrix is: 190722-23:14:43,358 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 0.49948 0.02236 -0.00397 -12.03688; 190722-23:14:43,358 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 0.01099 -0.16162 0.47303 17.56217; 190722-23:14:43,358 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 0.01987 -0.47263 -0.16194 97.52628; 190722-23:14:43,358 nipype.interface INFO: stdout 2019-07-22T23:14:43.356200: 0.00000 0.00000 0.00000 1.00000; 190722-23:14:44,123 nipype.interface INFO: stdout 2019-07-22T23:14:44.123823: 190722-23:14:44,124 nipype.interface INFO: stdout 2019-07-22T23:14:44.123823:Resampling 190722-23:14:44,124 nipype.interface INFO: stdout 2019-07-22T23:14:44.123823:Output registration matrix is identity 190722-23:14:44,124 nipype.interface INFO: stdout 2019-07-22T23:14:44.123823: 190722-23:14:44,124 nipype.interface INFO: stdout 2019-07-22T23:14:44.123823:mri_vol2vol done 190722-23:14:44,152 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/wm_tfm". 190722-23:14:44,153 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/tcc_tfm". 190722-23:14:44,155 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/csf_tfm". 190722-23:14:44,157 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:14:44,159 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:14:44,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/acc_tfm". 190722-23:14:44,160 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:14:44,162 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:14:44,431 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.csf_tfm". 190722-23:14:44,446 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.wm_tfm". 190722-23:14:44,452 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tcc_tfm". 190722-23:14:44,494 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acc_tfm". 190722-23:14:44,533 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/compcor_plot". 190722-23:14:44,536 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:14:44,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.compcor_plot". 190722-23:14:46,889 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/conf_corr_plot". 190722-23:14:46,892 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:14:49,862 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/model_expansion". 190722-23:14:49,864 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/wm_msk". 190722-23:14:49,865 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/tcc_msk". 190722-23:14:49,866 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:14:49,866 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/csf_msk". 190722-23:14:49,868 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:14:49,868 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:14:49,869 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:14:49,873 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/acc_msk". 190722-23:14:49,897 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:14:49,913 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tcc_msk". 190722-23:14:49,913 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.wm_msk". 190722-23:14:49,914 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.csf_msk". 190722-23:14:49,943 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acc_msk". 190722-23:14:51,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.model_expansion". 190722-23:14:51,972 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.conf_corr_plot". 190722-23:14:52,231 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_confounds_wf/spike_regressors". 190722-23:14:52,233 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:14:52,238 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/tcompcor". 190722-23:14:52,241 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:14:52,993 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:14:52,994 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:14:52,996 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:14:52,998 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:14:53,121 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:14:53,163 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:14:54,54 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_confounds_wf.spike_regressors". 190722-23:14:54,151 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tcompcor". 190722-23:14:54,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:14:54,252 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:14:54,252 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:14:54,252 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:14:54,253 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:14:54,254 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:14:54,254 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:14:54,256 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:14:54,600 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/signals". 190722-23:14:54,603 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/acompcor". 190722-23:14:54,603 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:14:54,605 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:14:56,274 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:14:56,277 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:14:56,283 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:14:56,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.signals". 190722-23:14:56,558 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acompcor". 190722-23:14:58,38 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:14:58,41 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:14:58,67 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:14:59,832 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/rois_plot". 190722-23:14:59,835 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:15:00,187 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:15:00,191 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:15:00,266 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:15:00,555 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:15:01,407 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:15:01,410 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:15:01,545 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:15:02,124 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/compcor_plot". 190722-23:15:02,127 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:15:02,483 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.compcor_plot". 190722-23:15:02,698 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/conf_corr_plot". 190722-23:15:02,701 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:15:02,705 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/model_expansion". 190722-23:15:02,707 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:15:02,821 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.model_expansion". 190722-23:15:03,196 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:15:03,199 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:15:03,200 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:15:03,202 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:15:03,346 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:15:03,368 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:15:05,65 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:15:05,67 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:15:05,68 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_confounds_wf/spike_regressors". 190722-23:15:05,69 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:15:05,70 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:05,70 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:15:05,71 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:15:05,72 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:15:05,72 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:15:05,77 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:15:05,126 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.spike_regressors". 190722-23:15:05,223 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:15:05,237 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:15:05,436 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:15:05,455 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:15:05,911 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.conf_corr_plot". 190722-23:15:07,98 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:15:07,102 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:15:07,103 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:15:07,103 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:15:07,104 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:15:07,104 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:15:07,105 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:15:07,107 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:15:07,475 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:15:07,479 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:15:08,691 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_confounds_wf.rois_plot". 190722-23:15:08,691 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/wm_tfm". 190722-23:15:08,694 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/tcc_tfm". 190722-23:15:08,694 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:08,696 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/csf_tfm". 190722-23:15:08,697 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:08,698 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/acc_tfm". 190722-23:15:08,699 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:08,701 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:09,10 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.csf_tfm". 190722-23:15:09,15 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tcc_tfm". 190722-23:15:09,17 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acc_tfm". 190722-23:15:09,22 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.wm_tfm". 190722-23:15:09,90 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:15:09,96 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:09,101 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:15:11,821 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/wm_msk". 190722-23:15:11,823 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/tcc_msk". 190722-23:15:11,824 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/csf_msk". 190722-23:15:11,825 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/acc_msk". 190722-23:15:11,826 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:11,826 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:11,828 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:11,828 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:11,866 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:15:11,871 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.wm_msk". 190722-23:15:11,871 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tcc_msk". 190722-23:15:11,875 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acc_msk". 190722-23:15:11,876 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.csf_msk". 190722-23:15:13,583 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:15:13,584 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:15:13,586 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:15:13,589 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:15:13,629 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/tcompcor". 190722-23:15:13,632 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:15:13,703 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:15:14,268 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:15:15,183 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:15:15,184 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:15:15,186 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/signals". 190722-23:15:15,372 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/acompcor". 190722-23:15:15,373 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:15:15,373 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:15:15,374 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:15:15,376 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:15:15,510 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:15:15,515 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:15:17,95 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:15:17,97 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:15:17,98 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:17,100 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:15:17,485 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:15:17,500 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:15:19,497 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:15:19,501 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:15:19,506 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/wm_tfm". 190722-23:15:19,508 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/tcc_tfm". 190722-23:15:19,510 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/csf_tfm". 190722-23:15:19,510 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:19,511 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:19,513 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:19,799 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.csf_tfm". 190722-23:15:19,805 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.wm_tfm". 190722-23:15:19,824 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tcc_tfm". 190722-23:15:21,130 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/wm_msk". 190722-23:15:21,132 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/tcc_msk". 190722-23:15:21,133 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/csf_msk". 190722-23:15:21,134 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:21,135 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:21,136 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:21,180 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.csf_msk". 190722-23:15:21,182 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tcc_msk". 190722-23:15:21,183 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.wm_msk". 190722-23:15:21,720 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tcompcor". 190722-23:15:23,108 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:15:23,111 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:15:23,195 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:15:23,491 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/tcompcor". 190722-23:15:23,494 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:15:23,567 nipype.interface INFO: stdout 2019-07-22T23:15:23.566976: 190722-23:15:23,567 nipype.interface INFO: stdout 2019-07-22T23:15:23.566976:Matrix from LTA: 190722-23:15:23,567 nipype.interface INFO: stdout 2019-07-22T23:15:23.566976: 0.99982 -0.01326 0.01364 0.77098; 190722-23:15:23,567 nipype.interface INFO: stdout 2019-07-22T23:15:23.566976:-0.01755 -0.36560 0.93061 -23.22731; 190722-23:15:23,567 nipype.interface INFO: stdout 2019-07-22T23:15:23.566976:-0.00735 -0.93068 -0.36577 -7.86478; 190722-23:15:23,567 nipype.interface INFO: stdout 2019-07-22T23:15:23.566976: 0.00000 0.00000 0.00000 1.00000; 190722-23:15:23,675 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.signals". 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385: 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:invert 0 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:tal 0 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:talres 2 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:regheader 0 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:noresample 0 190722-23:15:23,723 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:interp nearest (0) 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:precision float (3) 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:Gdiag_no -1 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:Synth 0 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:SynthSeed 1564486094 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385: 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:Final tkRAS-to-tkRAS Matrix is: 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385: 0.99982 -0.01326 0.01364 0.77098; 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:-0.01755 -0.36560 0.93061 -23.22731; 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385:-0.00735 -0.93068 -0.36577 -7.86477; 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.723385: 0.00000 0.00000 0.00000 1.00000; 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.724482: 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.724482: 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.724482:Vox2Vox Matrix is: 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.724482: 0.49991 0.00682 0.00663 -11.09599; 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.724482:-0.00368 -0.18288 0.46534 23.24894; 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.724482: 0.00877 -0.46530 -0.18280 100.22045; 190722-23:15:23,724 nipype.interface INFO: stdout 2019-07-22T23:15:23.724482: 0.00000 0.00000 0.00000 1.00000; 190722-23:15:23,876 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/acc_tfm". 190722-23:15:23,879 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:15:24,136 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:15:24,140 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acc_tfm". 190722-23:15:24,531 nipype.interface INFO: stdout 2019-07-22T23:15:24.531538: 190722-23:15:24,531 nipype.interface INFO: stdout 2019-07-22T23:15:24.531538:Resampling 190722-23:15:24,531 nipype.interface INFO: stdout 2019-07-22T23:15:24.531538:Output registration matrix is identity 190722-23:15:24,531 nipype.interface INFO: stdout 2019-07-22T23:15:24.531538: 190722-23:15:24,531 nipype.interface INFO: stdout 2019-07-22T23:15:24.531538:mri_vol2vol done 190722-23:15:25,99 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:15:25,102 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/rois_plot". 190722-23:15:25,104 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:15:25,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/signals". 190722-23:15:25,105 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:15:25,105 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/acc_msk". 190722-23:15:25,121 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:15:25,121 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:25,167 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acc_msk". 190722-23:15:25,169 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acompcor". 190722-23:15:25,353 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tcompcor". 190722-23:15:25,809 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:15:27,94 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.signals". 190722-23:15:27,516 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:15:27,520 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:15:27,830 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:15:28,573 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:15:28,575 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:15:28,613 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:15:29,699 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/compcor_plot". 190722-23:15:29,702 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:15:30,103 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.compcor_plot". 190722-23:15:31,71 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/conf_corr_plot". 190722-23:15:31,72 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/model_expansion". 190722-23:15:31,74 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/rois_plot". 190722-23:15:31,115 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/acompcor". 190722-23:15:31,116 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:15:31,116 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:15:31,117 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:15:31,118 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:15:31,672 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.model_expansion". 190722-23:15:33,124 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acompcor". 190722-23:15:33,863 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_confounds_wf/spike_regressors". 190722-23:15:33,865 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:15:34,231 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:15:34,234 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:15:34,314 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:15:34,393 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.spike_regressors". 190722-23:15:34,617 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.conf_corr_plot". 190722-23:15:37,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/compcor_plot". 190722-23:15:37,473 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:15:37,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.compcor_plot". 190722-23:15:38,61 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/conf_corr_plot". 190722-23:15:38,64 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:15:38,68 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/model_expansion". 190722-23:15:38,70 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:15:38,141 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.model_expansion". 190722-23:15:39,739 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_confounds_wf.rois_plot". 190722-23:15:40,778 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.rois_plot". 190722-23:15:40,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_confounds_wf/spike_regressors". 190722-23:15:40,794 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:15:40,834 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.spike_regressors". 190722-23:15:41,270 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:15:41,414 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_confounds_wf.conf_corr_plot". 190722-23:15:43,328 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190722-23:15:43,333 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-1468 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 7 --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /gpfs/ysm/scratch60/oad4/output/freesurfer 190722-23:15:47,308 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:15:47,312 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:15:47,401 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:15:49,326 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:15:49,329 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:15:49,458 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:15:51,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:15:51,354 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:15:51,355 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:15:51,356 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:15:51,356 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:15:51,357 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:15:51,358 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:15:51,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:15:53,306 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:15:53,309 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:15:53,314 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:15:57,738 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:15:57,742 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:15:57,838 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:15:59,331 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:15:59,335 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:15:59,450 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:16:01,465 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:16:01,469 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:16:01,598 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:16:03,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:16:03,315 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:16:03,662 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:16:05,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:16:05,314 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:16:05,636 nipype.interface INFO: stdout 2019-07-22T23:16:05.636101: 190722-23:16:05,636 nipype.interface INFO: stdout 2019-07-22T23:16:05.636101:Matrix from LTA: 190722-23:16:05,636 nipype.interface INFO: stdout 2019-07-22T23:16:05.636101: 0.99853 -0.00000 0.05427 1.57552; 190722-23:16:05,636 nipype.interface INFO: stdout 2019-07-22T23:16:05.636101:-0.05018 -0.38087 0.92327 -20.08426; 190722-23:16:05,636 nipype.interface INFO: stdout 2019-07-22T23:16:05.636101: 0.02067 -0.92463 -0.38031 -9.13916; 190722-23:16:05,636 nipype.interface INFO: stdout 2019-07-22T23:16:05.636101: 0.00000 0.00000 0.00000 1.00000; 190722-23:16:05,642 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:16:05,773 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 190722-23:16:05,773 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:16:05,773 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190722-23:16:05,773 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:16:05,773 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190722-23:16:05,773 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:invert 0 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:tal 0 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:talres 2 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:regheader 0 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:noresample 0 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:interp nearest (0) 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:precision float (3) 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:Gdiag_no -1 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:Synth 0 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:SynthSeed 1564548156 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:Final tkRAS-to-tkRAS Matrix is: 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 0.99853 -0.00000 0.05427 1.57550; 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:-0.05018 -0.38087 0.92327 -20.08426; 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 0.02067 -0.92463 -0.38031 -9.13915; 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 0.00000 0.00000 0.00000 1.00000; 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402:Vox2Vox Matrix is: 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 0.49926 0.02713 0.00000 -13.16653; 190722-23:16:05,792 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 0.01033 -0.19015 0.46231 23.41043; 190722-23:16:05,793 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 0.02509 -0.46163 -0.19044 100.21130; 190722-23:16:05,793 nipype.interface INFO: stdout 2019-07-22T23:16:05.773402: 0.00000 0.00000 0.00000 1.00000; 190722-23:16:06,532 nipype.interface INFO: stdout 2019-07-22T23:16:06.532064: 190722-23:16:06,532 nipype.interface INFO: stdout 2019-07-22T23:16:06.532064:Resampling 190722-23:16:06,532 nipype.interface INFO: stdout 2019-07-22T23:16:06.532064:Output registration matrix is identity 190722-23:16:06,532 nipype.interface INFO: stdout 2019-07-22T23:16:06.532064: 190722-23:16:06,532 nipype.interface INFO: stdout 2019-07-22T23:16:06.532064:mri_vol2vol done 190722-23:16:07,992 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:16:07,995 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:16:12,341 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:16:13,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:16:13,509 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:16:14,163 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:16:15,533 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/wm_tfm". 190722-23:16:15,537 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:16:15,787 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.wm_tfm". 190722-23:16:17,524 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/wm_msk". 190722-23:16:17,527 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:16:17,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.wm_msk". 190722-23:16:19,474 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/tcc_tfm". 190722-23:16:19,477 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:16:19,708 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tcc_tfm". 190722-23:16:21,332 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190722-23:16:21,409 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/tcc_msk". 190722-23:16:21,411 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:16:21,452 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tcc_msk". 190722-23:16:23,460 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.bbregister" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister". 190722-23:16:23,467 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.registration" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration". 190722-23:16:23,468 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.dat --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-1468 190722-23:16:23,471 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190722-23:17:12,668 nipype.interface INFO: stdout 2019-07-22T23:17:12.668320: 190722-23:17:12,668 nipype.interface INFO: stdout 2019-07-22T23:17:12.668320:Matrix from LTA: 190722-23:17:12,668 nipype.interface INFO: stdout 2019-07-22T23:17:12.668320: 0.99856 0.00550 0.05332 1.51132; 190722-23:17:12,668 nipype.interface INFO: stdout 2019-07-22T23:17:12.668320:-0.04668 -0.39972 0.91545 -21.31937; 190722-23:17:12,668 nipype.interface INFO: stdout 2019-07-22T23:17:12.668320: 0.02635 -0.91662 -0.39889 -6.68745; 190722-23:17:12,668 nipype.interface INFO: stdout 2019-07-22T23:17:12.668320: 0.00000 0.00000 0.00000 1.00000; 190722-23:17:12,823 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 190722-23:17:12,823 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:17:12,823 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:movvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190722-23:17:12,823 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:targvol /gpfs/ysm/scratch60/oad4/output/freesurfer/sub-1468/mri/brainmask.mgz 190722-23:17:12,823 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:outvol /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190722-23:17:12,823 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:regfile /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:invert 0 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:tal 0 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:talres 2 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:regheader 0 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:noresample 0 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:interp nearest (0) 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:precision float (3) 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:Gdiag_no -1 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:Synth 0 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:SynthSeed 1564585295 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:Final tkRAS-to-tkRAS Matrix is: 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 0.99856 0.00550 0.05332 1.51134; 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:-0.04668 -0.39972 0.91545 -21.31935; 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 0.02635 -0.91662 -0.39889 -6.68742; 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 0.00000 0.00000 0.00000 1.00000; 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131:Vox2Vox Matrix is: 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 0.49928 0.02666 -0.00275 -12.72438; 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 0.01317 -0.19944 0.45831 23.52254; 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 0.02334 -0.45772 -0.19986 100.52326; 190722-23:17:12,824 nipype.interface INFO: stdout 2019-07-22T23:17:12.823131: 0.00000 0.00000 0.00000 1.00000; 190722-23:17:13,658 nipype.interface INFO: stdout 2019-07-22T23:17:13.658422: 190722-23:17:13,658 nipype.interface INFO: stdout 2019-07-22T23:17:13.658422:Resampling 190722-23:17:13,658 nipype.interface INFO: stdout 2019-07-22T23:17:13.658422:Output registration matrix is identity 190722-23:17:13,658 nipype.interface INFO: stdout 2019-07-22T23:17:13.658422: 190722-23:17:13,658 nipype.interface INFO: stdout 2019-07-22T23:17:13.658422:mri_vol2vol done 190722-23:17:29,875 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.bbregister". 190722-23:17:32,686 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/tcompcor". 190722-23:17:32,690 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:17:49,6 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tcompcor". 190722-23:17:49,617 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:17:49,621 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:17:49,767 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:17:51,602 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/csf_tfm". 190722-23:17:51,606 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:17:51,907 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.csf_tfm". 190722-23:17:53,570 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/csf_msk". 190722-23:17:53,573 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:17:53,630 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.csf_msk". 190722-23:17:56,65 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/acc_tfm". 190722-23:17:56,70 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:17:56,364 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acc_tfm". 190722-23:17:57,594 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/signals". 190722-23:17:57,598 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:18:15,729 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.signals". 190722-23:18:17,576 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/acc_msk". 190722-23:18:17,579 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:18:17,626 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acc_msk". 190722-23:18:20,427 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:18:20,431 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190722-23:18:20,551 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190722-23:18:21,439 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/rois_plot". 190722-23:18:21,461 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:18:44,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.rois_plot". 190722-23:18:45,879 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/acompcor". 190722-23:18:45,883 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:19:10,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acompcor". 190722-23:19:11,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:19:11,877 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:19:12,485 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:19:13,486 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/compcor_plot". 190722-23:19:13,489 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:19:13,880 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.compcor_plot". 190722-23:19:22,201 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:19:22,204 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190722-23:19:22,378 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190722-23:19:24,576 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190722-23:19:24,580 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190722-23:19:24,581 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190722-23:19:24,581 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190722-23:19:24,581 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190722-23:19:24,582 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190722-23:19:24,582 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190722-23:19:24,584 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190722-23:19:26,573 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190722-23:19:26,576 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190722-23:19:26,581 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190722-23:19:31,695 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/conf_corr_plot". 190722-23:19:31,697 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:19:37,287 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.conf_corr_plot". 190722-23:19:38,439 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_concat". 190722-23:19:38,442 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-1468.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190722-23:19:38,596 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.lta_concat". 190722-23:19:40,65 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190722-23:19:40,68 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190722-23:19:40,160 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190722-23:19:42,70 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190722-23:19:42,87 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190722-23:19:42,197 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190722-23:19:44,73 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190722-23:19:44,76 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:19:44,454 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190722-23:19:46,91 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190722-23:19:46,96 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/applyrefined/sub-1468_ses-1_T1w_template_corrected_xform_masked.nii.gz -src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:19:46,491 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190722-23:19:48,475 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/mask_t1w_tfm". 190722-23:19:48,479 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/gen_ref/sub-1468_ses-1_T1w_template_corrected_xform_masked_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190722-23:19:53,119 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.mask_t1w_tfm". 190722-23:19:54,85 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190722-23:19:54,90 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190722-23:19:54,795 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190722-23:19:56,462 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/model_expansion". 190722-23:19:56,465 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:19:58,735 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.model_expansion". 190722-23:20:00,88 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_confounds_wf/spike_regressors". 190722-23:20:00,91 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:20:01,868 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_confounds_wf.spike_regressors". 190722-23:20:05,991 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.wm_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/wm_tfm". 190722-23:20:05,995 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/wm_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:20:06,280 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.wm_tfm". 190722-23:20:08,754 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.wm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/wm_msk". 190722-23:20:08,775 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:20:08,821 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.wm_msk". 190722-23:20:10,371 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tcc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/tcc_tfm". 190722-23:20:10,376 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:20:10,724 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tcc_tfm". 190722-23:20:12,366 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tcc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/tcc_msk". 190722-23:20:12,369 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:20:12,426 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tcc_msk". 190722-23:20:14,388 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tcompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/tcompcor". 190722-23:20:14,391 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190722-23:20:47,100 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tcompcor". 190722-23:20:48,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tcc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/tcc_metadata_fmt". 190722-23:20:48,406 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:20:48,548 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.tcc_metadata_fmt". 190722-23:20:50,400 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.csf_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/csf_tfm". 190722-23:20:50,403 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/csf_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:20:50,812 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.csf_tfm". 190722-23:20:52,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.csf_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/csf_msk". 190722-23:20:52,401 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:20:52,447 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.csf_msk". 190722-23:20:54,850 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acc_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/acc_tfm". 190722-23:20:54,854 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/acc_roi/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190722-23:20:55,115 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acc_tfm". 190722-23:20:56,416 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.signals" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/signals". 190722-23:20:56,421 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190722-23:21:33,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.signals". 190722-23:21:34,453 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acc_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/acc_msk". 190722-23:21:34,455 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190722-23:21:34,501 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acc_msk". 190722-23:21:38,597 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.rois_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/rois_plot". 190722-23:21:38,600 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190722-23:22:16,763 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.rois_plot". 190722-23:22:18,916 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acompcor" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/acompcor". 190722-23:22:18,919 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190722-23:23:35,323 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acompcor". 190722-23:23:37,122 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acc_metadata_fmt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/acc_metadata_fmt". 190722-23:23:37,125 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190722-23:23:38,455 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.acc_metadata_fmt". 190722-23:23:40,578 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.compcor_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/compcor_plot". 190722-23:23:40,580 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190722-23:23:40,959 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.compcor_plot". 190722-23:23:54,790 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.conf_corr_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/conf_corr_plot". 190722-23:23:54,795 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190722-23:23:59,725 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.conf_corr_plot". 190722-23:24:01,549 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.model_expansion" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/model_expansion". 190722-23:24:01,554 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190722-23:24:03,933 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.model_expansion". 190722-23:24:05,174 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.spike_regressors" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_confounds_wf/spike_regressors". 190722-23:24:05,177 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190722-23:24:10,134 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_confounds_wf.spike_regressors". 190723-00:00:37,964 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.registration". 190723-00:00:40,249 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_mask". 190723-00:00:40,271 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_moving". 190723-00:00:40,272 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/refine/sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-1468_ses-1_T1w_template_corrected_xform_rbrainmask_trans.nii.gz --reference-image /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:00:40,295 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-1468_ses-1_T1w_template_corrected_xform_trans.nii.gz --reference-image /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:00:40,316 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_seg". 190723-00:00:40,341 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/t1_seg/sub-1468_ses-1_T1w_template_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-1468_ses-1_T1w_template_corrected_xform_masked_seg_trans.nii.gz --reference-image /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:00:40,925 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms0". 190723-00:00:40,927 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms1". 190723-00:00:40,930 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms2". 190723-00:00:40,930 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/t1_seg/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:00:40,931 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/t1_seg/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:00:40,933 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/t1_seg/sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-1468_ses-1_T1w_template_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:01:06,373 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190723-00:01:08,887 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190723-00:01:09,142 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190723-00:01:10,703 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms". 190723-00:01:10,707 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms0". 190723-00:01:10,708 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190723-00:01:10,708 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190723-00:01:10,709 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms1". 190723-00:01:10,710 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190723-00:01:10,710 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190723-00:01:10,711 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms2". 190723-00:01:10,712 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190723-00:01:10,712 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190723-00:01:10,715 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190723-00:01:23,91 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190723-00:02:31,79 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190723-00:02:33,733 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/norm_msk". 190723-00:02:33,737 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190723-00:02:35,49 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190723-00:02:36,226 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190723-00:02:36,890 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/norm_rpt". 190723-00:02:36,893 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190723-00:02:37,281 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:02:37,515 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:02:44,663 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190723-00:02:47,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/outputnode". 190723-00:02:47,369 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-00:02:47,375 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_norm_wf.outputnode". 190723-00:02:58,634 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/lut_tpl_seg". 190723-00:02:58,637 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190723-00:02:58,874 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190723-00:03:15,212 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/carpetplot_wf/mrg_xfms". 190723-00:03:15,217 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:03:15,221 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.carpetplot_wf.mrg_xfms". 190723-00:03:17,987 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:03:17,990 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:03:18,433 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.gen_ref". 190723-00:03:19,799 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:03:19,805 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:03:36,259 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:03:38,498 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:03:38,502 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:03:54,738 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:03:56,855 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:03:56,858 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:04:08,635 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:04:10,263 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:04:10,267 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:04:12,23 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:04:13,720 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:04:13,724 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:04:14,136 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.gen_ref". 190723-00:04:15,858 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:04:15,862 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:04:32,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:04:34,499 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:04:34,504 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:04:50,544 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:04:52,472 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:04:52,477 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:05:03,920 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:05:06,532 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:05:06,537 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:05:08,536 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:05:09,895 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:05:09,903 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:05:10,305 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.gen_ref". 190723-00:05:11,703 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:05:11,706 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:05:28,122 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:05:30,616 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:05:30,622 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:05:47,284 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:05:48,708 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:05:48,712 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:05:50,738 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:05:51,924 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/merge". 190723-00:05:51,946 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:05:52,602 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:05:52,605 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:05:52,962 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:05:52,966 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:05:52,993 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.gen_ref". 190723-00:05:53,333 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.gen_ref". 190723-00:05:53,482 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:05:53,486 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:05:53,546 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:05:53,551 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:05:53,792 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:05:53,795 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:05:53,845 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.gen_ref". 190723-00:05:53,849 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:05:53,852 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:05:53,917 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.gen_ref". 190723-00:05:54,154 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.gen_ref". 190723-00:05:54,196 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.gen_ref". 190723-00:05:54,347 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:05:54,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:05:54,350 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:05:54,354 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:05:54,358 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:05:54,361 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:05:56,389 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:05:56,391 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:05:56,394 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:05:56,395 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:05:56,399 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:05:56,402 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:06:00,215 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:06:03,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:06:03,141 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:06:04,802 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:06:06,26 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:06:06,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:06:06,282 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:08,116 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:06:08,825 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:06:08,830 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:06:09,807 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:06:10,625 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:06:10,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:06:11,596 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:06:11,598 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:06:11,600 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:06:11,602 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:11,822 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:06:12,782 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:06:13,286 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:06:13,831 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:06:13,833 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:06:13,836 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:06:13,836 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:06:13,839 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:13,840 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:15,24 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:06:15,26 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:06:15,29 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:06:15,30 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:22,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:06:24,971 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:06:24,974 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:25,487 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:06:26,737 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:06:26,804 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:06:26,807 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:06:26,865 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:06:28,406 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:06:29,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:06:29,559 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:06:29,562 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:06:29,583 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:06:30,48 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:06:30,97 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:06:30,271 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:06:30,274 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:30,567 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:06:31,274 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:06:34,400 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:06:34,403 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:34,405 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:06:34,409 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:06:35,105 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:06:35,111 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:06:35,156 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.merge". 190723-00:06:35,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.gen_ref". 190723-00:06:35,825 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-00:06:35,828 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190723-00:06:36,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.gen_ref". 190723-00:06:36,214 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/resampling_xfm". 190723-00:06:36,236 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:06:36,455 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.resampling_xfm". 190723-00:06:36,623 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:06:36,642 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:06:36,649 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:06:38,212 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/set_xfm_source". 190723-00:06:38,213 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:06:38,216 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:06:38,217 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:06:38,217 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:06:38,222 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:38,331 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.set_xfm_source". 190723-00:06:39,268 nipype.interface INFO: stderr 2019-07-23T00:06:39.268607:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-00:06:39,268 nipype.interface INFO: stderr 2019-07-23T00:06:39.268607:++ Authored by: RW Cox 190723-00:06:39,269 nipype.interface INFO: stderr 2019-07-23T00:06:39.269101:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190723-00:06:39,269 nipype.interface INFO: stderr 2019-07-23T00:06:39.269101: Warnings of this type will be muted for this session. 190723-00:06:39,269 nipype.interface INFO: stderr 2019-07-23T00:06:39.269101: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-00:06:39,269 nipype.interface INFO: stderr 2019-07-23T00:06:39.269475:++ Coarse del was 10, replaced with 7 190723-00:06:40,236 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:06:40,241 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:06:40,245 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:06:40,311 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:06:41,133 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:06:41,770 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:06:41,772 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:06:41,833 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:06:42,131 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-000641-oad4-sampler.aI.a1-dc2bbb10-5140-4e5b-ac0f-70805b700a16.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:06:42,526 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:06:42,531 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:06:42,535 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:06:43,810 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:06:43,812 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:06:43,814 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:06:43,815 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:44,244 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:06:44,246 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:06:45,592 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:06:45,831 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:06:45,840 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-000645-oad4-sampler.aI.a0-64d91c86-57d1-4df2-a7f8-4376e72a07f7.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:06:45,858 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:06:46,239 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:06:46,241 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.aparc_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190723-00:06:46,242 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:06:46,244 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:46,378 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:06:49,457 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:06:49,459 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.aseg_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190723-00:06:49,501 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:06:49,502 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190723-00:06:50,636 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:06:51,489 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:06:52,971 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.mask_std_tfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190723-00:06:52,974 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190723-00:06:52,979 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/carpetplot_wf/resample_parc". 190723-00:06:52,983 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:06:54,825 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:06:56,913 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/carpetplot_wf/mrg_xfms". 190723-00:06:56,915 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:06:56,919 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.carpetplot_wf.mrg_xfms". 190723-00:06:57,97 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:06:58,761 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:06:58,765 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:06:58,765 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/carpetplot_wf/resample_parc". 190723-00:06:58,769 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:00,92 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:07:00,365 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:07:00,912 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.carpetplot_wf.resample_parc". 190723-00:07:02,711 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.aparc_std_tfm". 190723-00:07:02,973 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/carpetplot_wf/mrg_xfms". 190723-00:07:02,976 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/carpetplot_wf/mrg_xfms". 190723-00:07:02,979 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:02,979 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:02,980 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/carpetplot_wf/mrg_xfms". 190723-00:07:02,982 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.carpetplot_wf.mrg_xfms". 190723-00:07:02,983 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.carpetplot_wf.mrg_xfms". 190723-00:07:02,983 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:02,987 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.carpetplot_wf.mrg_xfms". 190723-00:07:04,572 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.mask_std_tfm". 190723-00:07:04,912 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/carpetplot_wf/resample_parc". 190723-00:07:04,914 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/carpetplot_wf/resample_parc". 190723-00:07:04,916 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:04,916 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/carpetplot_wf/resample_parc". 190723-00:07:04,917 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:04,919 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:04,920 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/carpetplot_wf/mrg_xfms". 190723-00:07:04,924 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:04,928 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.carpetplot_wf.mrg_xfms". 190723-00:07:05,663 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.aseg_std_tfm". 190723-00:07:06,75 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.carpetplot_wf.resample_parc". 190723-00:07:07,492 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190723-00:07:07,495 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/carpetplot_wf/resample_parc". 190723-00:07:07,496 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190723-00:07:07,498 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:07,499 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/carpetplot_wf/mrg_xfms". 190723-00:07:07,501 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:07,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.carpetplot_wf.mrg_xfms". 190723-00:07:08,226 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/carpetplot_wf/resample_parc". 190723-00:07:08,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/carpetplot_wf/mrg_xfms". 190723-00:07:08,230 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:08,232 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:08,236 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.carpetplot_wf.mrg_xfms". 190723-00:07:08,305 nipype.interface INFO: stderr 2019-07-23T00:07:08.305613:++ Max displacement in automask = 0.26 (mm) at sub-brick 9 190723-00:07:08,305 nipype.interface INFO: stderr 2019-07-23T00:07:08.305613:++ Max delta displ in automask = 0.24 (mm) at sub-brick 19 190723-00:07:09,114 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190723-00:07:10,234 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/carpetplot_wf/resample_parc". 190723-00:07:10,238 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:10,243 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/carpetplot_wf/mrg_xfms". 190723-00:07:10,245 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:10,249 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.carpetplot_wf.mrg_xfms". 190723-00:07:10,388 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:07:12,452 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.carpetplot_wf.resample_parc". 190723-00:07:12,698 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.carpetplot_wf.resample_parc". 190723-00:07:12,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.carpetplot_wf.resample_parc". 190723-00:07:13,45 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/carpetplot_wf/resample_parc". 190723-00:07:13,48 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/carpetplot_wf/mrg_xfms". 190723-00:07:13,48 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:13,81 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:13,85 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.carpetplot_wf.mrg_xfms". 190723-00:07:14,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:07:14,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/carpetplot_wf/resample_parc". 190723-00:07:14,234 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:07:14,236 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.carpetplot_wf.mrg_xfms" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/carpetplot_wf/mrg_xfms". 190723-00:07:14,236 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:14,238 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 190723-00:07:14,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.carpetplot_wf.mrg_xfms". 190723-00:07:15,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.carpetplot_wf.resample_parc". 190723-00:07:15,920 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.carpetplot_wf.resample_parc". 190723-00:07:16,547 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/carpetplot_wf/conf_plot". 190723-00:07:16,550 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:16,941 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.carpetplot_wf.resample_parc" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/carpetplot_wf/resample_parc". 190723-00:07:16,945 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/oad4/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 190723-00:07:16,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/carpetplot_wf/conf_plot". 190723-00:07:16,953 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:16,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/carpetplot_wf/conf_plot". 190723-00:07:16,960 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:17,395 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.carpetplot_wf.resample_parc". 190723-00:07:18,482 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.carpetplot_wf.conf_plot". 190723-00:07:19,441 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/carpetplot_wf/conf_plot". 190723-00:07:19,446 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:19,459 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/carpetplot_wf/conf_plot". 190723-00:07:19,462 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:19,518 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:07:20,944 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:07:20,948 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:07:20,998 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.carpetplot_wf.resample_parc". 190723-00:07:21,884 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.carpetplot_wf.conf_plot". 190723-00:07:22,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.carpetplot_wf.resample_parc". 190723-00:07:22,600 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:07:23,390 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/carpetplot_wf/conf_plot". 190723-00:07:23,393 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:23,399 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/carpetplot_wf/conf_plot". 190723-00:07:23,402 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:23,423 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/carpetplot_wf/conf_plot". 190723-00:07:23,434 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:24,978 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:07:24,981 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:07:24,983 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.carpetplot_wf.resample_parc". 190723-00:07:26,978 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/carpetplot_wf/conf_plot". 190723-00:07:26,981 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:27,592 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:07:28,76 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.carpetplot_wf.conf_plot". 190723-00:07:28,975 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:07:28,978 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:07:29,149 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:07:29,522 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/carpetplot_wf/conf_plot". 190723-00:07:29,525 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:31,18 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:07:31,23 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:07:31,959 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.carpetplot_wf.conf_plot". 190723-00:07:33,494 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.carpetplot_wf.conf_plot" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/carpetplot_wf/conf_plot". 190723-00:07:33,497 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 190723-00:07:34,977 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:07:36,203 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.carpetplot_wf.conf_plot". 190723-00:07:36,987 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:07:36,990 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:07:37,67 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:07:39,20 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:07:39,25 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:07:39,281 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:07:40,72 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.carpetplot_wf.conf_plot". 190723-00:07:40,985 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:07:40,988 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:07:41,15 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:07:42,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:07:42,984 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:07:43,46 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.carpetplot_wf.conf_plot". 190723-00:07:43,108 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:07:44,962 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:07:44,984 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:07:45,168 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:08:00,77 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.carpetplot_wf.conf_plot". 190723-00:08:03,509 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.carpetplot_wf.conf_plot". 190723-00:08:05,906 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.carpetplot_wf.conf_plot". 190723-00:08:07,101 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:08:07,111 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:08:50,320 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.carpetplot_wf.conf_plot". 190723-00:08:52,523 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:08:53,69 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/merge". 190723-00:08:53,78 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:08:53,92 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:08:53,96 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:09:02,268 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:09:02,425 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.merge". 190723-00:09:03,73 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/resampling_xfm". 190723-00:09:03,298 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:09:03,491 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.resampling_xfm". 190723-00:09:03,738 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:09:03,741 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/merge". 190723-00:09:03,745 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:09:03,758 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:09:03,764 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:09:05,174 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/set_xfm_source". 190723-00:09:05,175 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:09:05,177 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:09:05,177 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:09:05,282 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.set_xfm_source". 190723-00:09:05,344 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.merge". 190723-00:09:05,972 nipype.interface INFO: stderr 2019-07-23T00:09:05.972673:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-00:09:05,972 nipype.interface INFO: stderr 2019-07-23T00:09:05.972673:++ Authored by: RW Cox 190723-00:09:05,973 nipype.interface INFO: stderr 2019-07-23T00:09:05.973058:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190723-00:09:05,973 nipype.interface INFO: stderr 2019-07-23T00:09:05.973058: Warnings of this type will be muted for this session. 190723-00:09:05,973 nipype.interface INFO: stderr 2019-07-23T00:09:05.973058: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-00:09:05,973 nipype.interface INFO: stderr 2019-07-23T00:09:05.973443:++ Coarse del was 10, replaced with 7 190723-00:09:07,89 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:09:07,94 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:09:07,95 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:09:07,96 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/resampling_xfm". 190723-00:09:07,98 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:09:07,100 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:09:07,102 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:09:07,107 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:09:07,240 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.resampling_xfm". 190723-00:09:07,511 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:09:07,531 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:09:07,538 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:09:07,550 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:09:07,552 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:09:07,568 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:09:07,570 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:09:08,639 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:09:08,648 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-000908-oad4-sampler.aI.a1-0bc08386-bb74-452f-8c39-f69efe721c4c.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:09:08,658 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:09:08,667 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-000908-oad4-sampler.aI.a0-4ff3b80f-3c9c-45a3-84af-7469c1484690.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:09:09,66 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/set_xfm_source". 190723-00:09:09,66 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:09:09,69 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:09:09,69 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:09:09,170 nipype.interface INFO: stderr 2019-07-23T00:09:09.170685:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-00:09:09,170 nipype.interface INFO: stderr 2019-07-23T00:09:09.170685:++ Authored by: RW Cox 190723-00:09:09,172 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.set_xfm_source". 190723-00:09:09,173 nipype.interface INFO: stderr 2019-07-23T00:09:09.173698:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii to FLOAT32 190723-00:09:09,173 nipype.interface INFO: stderr 2019-07-23T00:09:09.173698: Warnings of this type will be muted for this session. 190723-00:09:09,173 nipype.interface INFO: stderr 2019-07-23T00:09:09.173698: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-00:09:09,174 nipype.interface INFO: stderr 2019-07-23T00:09:09.174085:++ Coarse del was 10, replaced with 7 190723-00:09:11,25 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:09:11,30 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:09:11,30 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:09:11,35 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:09:11,35 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:09:11,39 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:09:11,199 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:09:11,200 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:09:11,232 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:09:11,233 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:09:12,642 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:09:12,650 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-000912-oad4-sampler.aI.a1-7e4681b5-9c66-424d-a829-8a83fd4e1070.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:09:12,660 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:09:12,669 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-000912-oad4-sampler.aI.a0-bcf8f522-1fd4-4d8d-8cd0-ef7446ae7ed2.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:09:33,848 nipype.interface INFO: stderr 2019-07-23T00:09:33.848875:++ Max displacement in automask = 0.19 (mm) at sub-brick 2 190723-00:09:33,849 nipype.interface INFO: stderr 2019-07-23T00:09:33.848875:++ Max delta displ in automask = 0.16 (mm) at sub-brick 5 190723-00:09:35,700 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:09:38,707 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:09:38,754 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:09:39,930 nipype.interface INFO: stderr 2019-07-23T00:09:39.930222:++ Max displacement in automask = 0.22 (mm) at sub-brick 9 190723-00:09:39,930 nipype.interface INFO: stderr 2019-07-23T00:09:39.930222:++ Max delta displ in automask = 0.24 (mm) at sub-brick 4 190723-00:09:42,186 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:09:43,304 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:09:43,307 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:09:48,614 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:09:49,280 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:09:49,284 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:09:50,967 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:09:53,119 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:09:53,122 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:09:55,682 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:09:57,369 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:09:57,373 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:09:57,625 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:09:59,100 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:09:59,104 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:10:03,61 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:10:05,131 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:10:05,134 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:10:05,207 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:10:07,367 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:10:07,371 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:10:07,643 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:10:09,101 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:10:09,104 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:10:09,131 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:10:11,270 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:10:11,292 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:10:11,428 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:10:13,256 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:10:13,260 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:10:13,404 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:10:17,125 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:10:17,129 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:10:22,366 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:10:23,140 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:10:23,143 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:10:24,916 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:10:27,114 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:10:27,117 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:10:29,869 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:10:31,125 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:10:31,131 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:10:31,294 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:10:33,330 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:10:33,334 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:10:37,326 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:10:39,154 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:10:39,157 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:10:39,235 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:10:41,138 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:10:41,141 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:10:41,395 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:10:43,141 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:10:43,144 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:10:43,171 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:10:45,290 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:10:45,294 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:10:45,448 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:10:47,373 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:10:47,377 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:10:47,667 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:16:32,945 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:16:33,469 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/merge". 190723-00:16:33,521 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:16:33,731 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:16:33,757 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:18:23,672 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.merge". 190723-00:18:25,462 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/resampling_xfm". 190723-00:18:25,466 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:18:25,637 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.resampling_xfm". 190723-00:18:27,528 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/set_xfm_source". 190723-00:18:27,535 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:18:27,638 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.set_xfm_source". 190723-00:18:29,844 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:18:29,849 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:18:29,855 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:18:31,757 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:18:31,763 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:18:31,774 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:18:35,234 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:18:35,236 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:18:37,71 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:18:37,94 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-001837-oad4-sampler.aI.a1-2ca19b40-ed3d-4857-91ca-f4be2efc8dbb.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:18:37,743 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:18:37,781 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:18:37,785 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:18:41,50 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:18:41,52 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:18:41,74 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:18:41,84 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-001841-oad4-sampler.aI.a0-dd3d0960-c331-48af-9570-8066c84876a0.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:18:41,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:18:41,495 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:18:42,385 nipype.interface INFO: stderr 2019-07-23T00:18:42.385051:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-00:18:42,385 nipype.interface INFO: stderr 2019-07-23T00:18:42.385051:++ Authored by: RW Cox 190723-00:18:42,385 nipype.interface INFO: stderr 2019-07-23T00:18:42.385520:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190723-00:18:42,385 nipype.interface INFO: stderr 2019-07-23T00:18:42.385520: Warnings of this type will be muted for this session. 190723-00:18:42,385 nipype.interface INFO: stderr 2019-07-23T00:18:42.385520: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-00:18:42,385 nipype.interface INFO: stderr 2019-07-23T00:18:42.385935:++ Coarse del was 10, replaced with 7 190723-00:19:13,629 nipype.interface INFO: stderr 2019-07-23T00:19:13.629289:++ Max displacement in automask = 0.18 (mm) at sub-brick 2 190723-00:19:13,629 nipype.interface INFO: stderr 2019-07-23T00:19:13.629289:++ Max delta displ in automask = 0.21 (mm) at sub-brick 3 190723-00:19:15,676 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:19:19,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:19:19,510 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:19:24,885 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:19:25,648 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:19:25,653 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:19:27,228 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:19:29,508 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:19:29,513 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:19:32,41 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:19:33,496 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:19:33,500 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:19:33,657 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:19:35,604 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:19:35,608 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:19:39,610 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:19:41,593 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:19:41,597 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:19:41,675 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:19:43,634 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:19:43,639 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:19:43,882 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:19:45,693 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:19:45,695 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:19:45,723 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:19:47,763 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:19:47,767 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:19:47,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:19:49,690 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:19:49,693 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:19:49,837 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:20:01,206 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:20:03,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/merge". 190723-00:20:03,783 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:20:04,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:20:04,467 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:20:48,120 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.merge". 190723-00:20:49,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/resampling_xfm". 190723-00:20:49,779 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:20:49,921 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.resampling_xfm". 190723-00:20:51,633 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/set_xfm_source". 190723-00:20:51,636 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:20:51,827 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.set_xfm_source". 190723-00:20:54,133 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:20:54,162 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:20:54,172 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:20:55,618 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:20:55,626 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:20:55,630 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:20:57,568 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:20:57,571 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:20:59,193 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:20:59,204 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-002059-oad4-sampler.aI.a1-d7030d08-036d-4751-8f08-7bf3f5e578b7.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:20:59,636 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:20:59,644 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:20:59,651 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:21:01,223 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:21:01,225 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:21:03,195 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:21:03,206 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-002103-oad4-sampler.aI.a0-3d77e21d-08cb-463f-9c9c-d53a657fdd2b.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:21:03,636 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:21:03,639 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:21:03,848 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:21:07,595 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:21:07,599 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:21:13,305 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:21:15,604 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:21:15,607 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:21:17,243 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:21:19,592 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:21:19,596 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:21:22,115 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:21:23,672 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:21:23,677 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:21:23,937 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:21:25,599 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:21:25,603 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:21:29,724 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:21:31,603 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:21:31,606 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:21:31,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:21:33,623 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:21:33,626 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:21:33,887 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:21:35,602 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:21:35,604 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:21:35,630 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:21:37,617 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:21:37,622 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:21:37,788 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:21:39,622 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:21:39,625 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:21:39,808 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:26:42,824 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:26:43,954 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/merge". 190723-00:26:44,11 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:26:44,12 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:26:44,23 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:27:30,670 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:27:32,28 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/merge". 190723-00:27:32,36 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:27:41,346 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.merge". 190723-00:27:42,13 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/resampling_xfm". 190723-00:27:42,18 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:27:42,202 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.resampling_xfm". 190723-00:27:42,405 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:27:42,566 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:27:42,572 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:27:43,984 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/set_xfm_source". 190723-00:27:43,985 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:27:43,987 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:27:43,987 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:27:44,93 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.set_xfm_source". 190723-00:27:44,241 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:27:46,37 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:27:46,43 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:27:46,43 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:27:46,47 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:27:46,48 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:27:46,51 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:27:46,507 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:27:46,509 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:27:46,558 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:27:46,559 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:27:47,487 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:27:47,498 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-002747-oad4-sampler.aI.a1-077475b5-e48b-489c-ac27-a78c83bccbf7.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:27:47,510 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:27:47,520 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-002747-oad4-sampler.aI.a0-84083c85-f524-4fca-b2a1-1d0d350902b9.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:27:48,72 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:27:48,76 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:27:53,103 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:27:53,993 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:27:53,998 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:27:55,555 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:27:57,995 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:27:57,998 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:28:00,361 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:28:01,977 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:28:01,996 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:28:02,144 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:28:03,974 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:28:03,979 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:28:07,921 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:28:09,928 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:28:09,931 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:28:10,6 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:28:11,897 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:28:11,901 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:28:12,124 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:28:13,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:28:13,960 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:28:13,983 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:28:15,982 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:28:15,987 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:28:16,107 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:28:18,14 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:28:18,203 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:28:18,364 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:28:20,485 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:28:20,534 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:28:24,211 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.merge". 190723-00:28:25,923 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/resampling_xfm". 190723-00:28:25,927 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:28:26,53 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.resampling_xfm". 190723-00:28:27,900 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/set_xfm_source". 190723-00:28:27,904 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:28:28,28 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.set_xfm_source". 190723-00:28:30,316 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:28:30,409 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:28:30,449 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:28:31,915 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:28:31,921 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:28:31,927 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:28:35,165 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:28:35,166 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:28:35,522 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:28:35,534 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-002835-oad4-sampler.aI.a1-971084dd-cc6b-485f-961f-c8b69e4d18cf.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:28:36,11 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:28:36,19 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:28:36,24 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:28:39,100 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:28:39,101 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:28:39,525 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:28:39,538 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-002839-oad4-sampler.aI.a0-6a5eda07-856c-4916-8d4b-6578ca67d5b0.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:28:39,929 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:28:39,932 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:28:40,860 nipype.interface INFO: stderr 2019-07-23T00:28:40.860517:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-00:28:40,861 nipype.interface INFO: stderr 2019-07-23T00:28:40.860517:++ Authored by: RW Cox 190723-00:28:40,861 nipype.interface INFO: stderr 2019-07-23T00:28:40.861091:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190723-00:28:40,861 nipype.interface INFO: stderr 2019-07-23T00:28:40.861091: Warnings of this type will be muted for this session. 190723-00:28:40,861 nipype.interface INFO: stderr 2019-07-23T00:28:40.861091: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-00:28:40,861 nipype.interface INFO: stderr 2019-07-23T00:28:40.861538:++ Coarse del was 10, replaced with 7 190723-00:29:10,188 nipype.interface INFO: stderr 2019-07-23T00:29:10.188412:++ Max displacement in automask = 0.23 (mm) at sub-brick 3 190723-00:29:10,188 nipype.interface INFO: stderr 2019-07-23T00:29:10.188412:++ Max delta displ in automask = 0.22 (mm) at sub-brick 16 190723-00:29:12,60 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:29:15,932 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:29:15,937 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:29:21,339 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:29:21,946 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:29:21,950 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:29:23,641 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:29:25,949 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:29:25,952 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:29:28,419 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:29:29,973 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:29:29,979 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:29:30,161 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:29:31,976 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:29:31,979 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:29:36,143 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:29:37,960 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:29:37,963 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:29:38,41 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:29:39,960 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:29:39,964 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:29:40,350 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:29:41,971 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:29:41,974 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:29:42,1 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:29:43,974 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:29:43,977 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:29:44,102 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:29:45,964 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:29:45,967 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:29:46,221 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:31:41,946 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:31:44,149 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/merge". 190723-00:31:44,177 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:31:44,209 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:31:44,219 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:32:27,897 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.merge". 190723-00:32:30,93 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/resampling_xfm". 190723-00:32:30,96 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:32:30,260 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.resampling_xfm". 190723-00:32:31,41 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:32:32,147 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/set_xfm_source". 190723-00:32:32,151 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:32:32,263 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.set_xfm_source". 190723-00:32:32,599 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:32:32,610 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/merge". 190723-00:32:32,618 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:32:32,801 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:32:32,807 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:32:34,257 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:32:34,263 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:32:34,263 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:32:34,263 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:32:34,267 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:32:34,267 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:32:34,267 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:32:34,276 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:32:35,558 nipype.interface INFO: stderr 2019-07-23T00:32:35.558111:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-00:32:35,558 nipype.interface INFO: stderr 2019-07-23T00:32:35.558111:++ Authored by: RW Cox 190723-00:32:35,558 nipype.interface INFO: stderr 2019-07-23T00:32:35.558560:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190723-00:32:35,558 nipype.interface INFO: stderr 2019-07-23T00:32:35.558560: Warnings of this type will be muted for this session. 190723-00:32:35,558 nipype.interface INFO: stderr 2019-07-23T00:32:35.558560: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-00:32:35,559 nipype.interface INFO: stderr 2019-07-23T00:32:35.559017:++ Coarse del was 10, replaced with 7 190723-00:32:35,930 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:32:35,932 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:32:36,17 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:32:36,19 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:32:37,712 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:32:37,725 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-003237-oad4-sampler.aI.a1-9e788ceb-329a-465c-9420-df576a510d32.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:32:37,739 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:32:37,751 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-003237-oad4-sampler.aI.a0-f8dc445b-2f28-4fc5-9415-b614f11dfbf5.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:32:41,920 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.merge". 190723-00:32:44,118 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/resampling_xfm". 190723-00:32:44,121 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:32:44,226 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.resampling_xfm". 190723-00:32:44,503 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:32:44,617 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:32:44,623 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:32:46,118 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/set_xfm_source". 190723-00:32:46,119 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:32:46,121 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:32:46,121 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:32:46,223 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.set_xfm_source". 190723-00:32:46,326 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:32:48,127 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:32:48,133 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:32:48,136 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:32:48,138 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:32:48,140 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:32:48,142 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:32:48,648 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:32:48,650 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:32:48,670 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:32:48,672 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:32:49,721 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:32:49,735 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-003249-oad4-sampler.aI.a1-4517a75d-e41e-40ed-ba3b-0c93b307bc9c.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:32:49,768 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:32:49,781 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-003249-oad4-sampler.aI.a0-a3ce5936-b9c6-4932-9a0e-be4ca6479d32.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:32:50,183 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:32:50,187 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:32:54,964 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:32:56,125 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:32:56,129 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:32:57,601 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:32:58,108 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:32:58,112 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:33:00,394 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:33:02,130 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:33:02,134 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:33:02,380 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:33:03,820 nipype.interface INFO: stderr 2019-07-23T00:33:03.820573:++ Max displacement in automask = 0.24 (mm) at sub-brick 18 190723-00:33:03,820 nipype.interface INFO: stderr 2019-07-23T00:33:03.820573:++ Max delta displ in automask = 0.24 (mm) at sub-brick 2 190723-00:33:04,133 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:33:04,136 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:33:05,618 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:33:07,352 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:33:07,399 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:33:08,164 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:33:10,118 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:33:10,121 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:33:15,638 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:33:16,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:33:16,140 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:33:17,708 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:33:18,126 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:33:18,132 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:33:20,661 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:33:22,130 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:33:22,135 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:33:22,396 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:33:24,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:33:24,322 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:33:28,465 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:33:30,151 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:33:30,155 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:33:30,232 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:33:32,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:33:32,139 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:33:32,391 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:33:34,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:33:34,137 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:33:34,168 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:33:36,139 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:33:36,143 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:33:36,263 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:33:38,140 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:33:38,145 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:33:38,388 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:33:40,136 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:33:40,138 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:33:40,214 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:33:42,153 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:33:42,159 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:33:42,372 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:33:44,156 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:33:44,159 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:33:44,184 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:33:46,144 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:33:46,150 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:33:46,287 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:33:48,144 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:33:48,150 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:33:48,415 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:39:51,496 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-00:39:52,544 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/merge". 190723-00:39:52,601 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-00:39:52,889 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-00:39:52,914 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-00:41:39,72 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.merge". 190723-00:41:40,508 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/resampling_xfm". 190723-00:41:40,511 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-00:41:40,663 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.resampling_xfm". 190723-00:41:42,509 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/set_xfm_source". 190723-00:41:42,513 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-00:41:42,708 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.set_xfm_source". 190723-00:41:45,298 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-00:41:45,302 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-00:41:45,312 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-00:41:46,525 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler". 190723-00:41:46,530 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-00:41:46,534 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:41:50,25 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-00:41:50,27 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler) 190723-00:41:50,132 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:41:50,146 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-004150-oad4-sampler.aI.a1-58bff3f8-63fb-4dd9-a254-b8eb7e492d87.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-00:41:50,566 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler". 190723-00:41:50,571 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-00:41:50,576 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-00:41:53,695 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-00:41:53,696 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler) 190723-00:41:54,135 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-00:41:54,150 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-004154-oad4-sampler.aI.a0-ab7400b2-3220-4e70-a731-503c8562b4ff.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-00:41:54,547 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-00:41:54,552 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-00:41:55,404 nipype.interface INFO: stderr 2019-07-23T00:41:55.404034:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-00:41:55,404 nipype.interface INFO: stderr 2019-07-23T00:41:55.404503:++ Authored by: RW Cox 190723-00:41:55,405 nipype.interface INFO: stderr 2019-07-23T00:41:55.405280:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 190723-00:41:55,405 nipype.interface INFO: stderr 2019-07-23T00:41:55.405426: Warnings of this type will be muted for this session. 190723-00:41:55,405 nipype.interface INFO: stderr 2019-07-23T00:41:55.405426: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-00:41:55,406 nipype.interface INFO: stderr 2019-07-23T00:41:55.405993:++ Coarse del was 10, replaced with 7 190723-00:42:24,399 nipype.interface INFO: stderr 2019-07-23T00:42:24.399774:++ Max displacement in automask = 0.19 (mm) at sub-brick 17 190723-00:42:24,399 nipype.interface INFO: stderr 2019-07-23T00:42:24.399774:++ Max delta displ in automask = 0.23 (mm) at sub-brick 11 190723-00:42:26,283 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-00:42:30,549 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-00:42:30,552 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-00:42:35,771 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-00:42:36,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-00:42:36,559 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-00:42:38,345 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-00:42:40,583 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-00:42:40,588 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-00:42:43,255 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-00:42:44,566 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-00:42:44,572 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-00:42:44,770 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-00:42:46,565 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-00:42:46,569 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-00:42:50,739 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-00:42:52,577 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-00:42:52,580 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:42:52,660 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-00:42:54,569 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-00:42:54,574 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-00:42:54,955 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-00:42:56,577 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-00:42:56,580 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-00:42:56,607 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-00:42:58,574 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-00:42:58,583 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-00:42:58,720 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-00:43:00,574 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-00:43:00,577 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-00:43:00,824 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-00:47:33,665 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190723-00:47:35,806 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190723-00:47:35,899 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-01:01:28,863 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190723-01:01:29,752 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/merge". 190723-01:01:29,867 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-01:01:29,966 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-01:01:29,989 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-01:03:34,853 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.merge". 190723-01:05:19,322 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.merge". 190723-01:05:26,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-01:05:26,255 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-01:05:26,334 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-01:05:26,695 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.resampling_xfm" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/resampling_xfm". 190723-01:05:26,700 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/resampling_xfm/out.lta --src /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-1468_ses-1_T1w_template_corrected_xform.nii.gz 190723-01:05:26,900 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.resampling_xfm". 190723-01:05:27,150 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190723-01:05:27,154 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-01:05:27,165 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190723-01:05:28,652 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.set_xfm_source" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/set_xfm_source". 190723-01:05:28,653 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190723-01:05:28,654 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-01:05:28,656 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-01:05:28,656 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/resampling_xfm/out.lta /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190723-01:05:28,657 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-01:05:28,764 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.set_xfm_source". 190723-01:05:29,229 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190723-01:05:30,784 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_rh/sampler". 190723-01:05:30,791 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190723-01:05:30,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.sampler" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_lh/sampler". 190723-01:05:30,801 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-01:05:30,804 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190723-01:05:30,816 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 190723-01:05:31,825 nipype.interface INFO: stderr 2019-07-23T01:05:31.825458:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-01:05:31,825 nipype.interface INFO: stderr 2019-07-23T01:05:31.825458:++ Authored by: RW Cox 190723-01:05:31,825 nipype.interface INFO: stderr 2019-07-23T01:05:31.825856:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/slice.nii.gz to FLOAT32 190723-01:05:31,825 nipype.interface INFO: stderr 2019-07-23T01:05:31.825856: Warnings of this type will be muted for this session. 190723-01:05:31,825 nipype.interface INFO: stderr 2019-07-23T01:05:31.825856: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-01:05:32,651 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190723-01:05:32,657 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-01:05:37,641 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-01:05:38,653 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190723-01:05:38,664 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-01:05:39,342 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0) 190723-01:05:39,344 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_rh/sampler) 190723-01:05:39,702 nipype.workflow WARNING: [Node] Error on "_sampler0" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0) 190723-01:05:39,703 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.sampler" (/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_lh/sampler) 190723-01:05:40,229 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-01:05:40,259 nipype.workflow ERROR: Node sampler.aI.a1 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-01:05:40,272 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-010540-oad4-sampler.aI.a1-5cd732fa-b5a4-4ee3-8c64-4c2840edb8fc.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/rh.cortex.label Invalid argument Return code: 255 190723-01:05:40,287 nipype.workflow ERROR: Node sampler.aI.a0 failed to run on host c20n03.farnam.hpc.yale.internal. 190723-01:05:40,300 nipype.workflow ERROR: Saving crash info to /gpfs/ysm/scratch60/oad4/output/fmriprep/sub-1468/log/20190722-151458_1771fef9-d970-4588-bb84-101b771e4442/crash-20190723-010540-oad4-sampler.aI.a0-a0623c4a-121f-4c08-b25b-42d2b1d035dc.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1259, in _run_interface self.config['execution']['stop_on_first_crash']))) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1181, in _collate_results (self.name, '\n'.join(msg))) Exception: Subnodes of node: sampler failed: Subnode 0 failed Error: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner result = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 144, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 758, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 695, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage5.gii --srcsubject sub-1468 --reg /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii --trgsubject fsaverage5 Standard output: srcvol = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage5.nii srcreg = /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_surf_wf/set_xfm_source/out_concat.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = fsaverage5 surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm Done loading volume INFO: overriding regsubject with sub-1468 Input reg is LTA -------- original matrix ----------- -1.00000 0.00000 -0.00011 0.00197; -0.00011 0.00024 1.00000 -11.04076; -0.00000 -1.00000 0.00024 -18.98714; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Standard error: No such file or directory mri_vol2surf: could not open label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument mri_vol2surf: could not load label file /gpfs/ysm/scratch60/oad4/output/freesurfer/fsaverage5/label/lh.cortex.label Invalid argument Return code: 255 190723-01:05:40,778 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190723-01:05:40,785 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-01:05:43,64 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-01:05:44,760 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190723-01:05:44,767 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-01:05:44,917 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-01:05:46,653 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190723-01:05:46,658 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-01:05:50,294 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-01:05:52,743 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190723-01:05:52,748 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:05:52,819 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-01:05:54,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190723-01:05:54,764 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190723-01:05:54,978 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-01:05:56,776 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190723-01:05:56,779 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:05:56,805 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-01:05:58,741 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190723-01:05:58,777 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-01:05:58,894 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-01:06:00,754 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190723-01:06:00,760 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190723-01:06:00,944 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-01:06:02,863 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-01:06:02,872 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-01:06:36,34 nipype.interface INFO: stderr 2019-07-23T01:06:36.034520:++ Max displacement in automask = 0.25 (mm) at sub-brick 19 190723-01:06:36,34 nipype.interface INFO: stderr 2019-07-23T01:06:36.034520:++ Max delta displ in automask = 0.28 (mm) at sub-brick 19 190723-01:06:41,693 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-01:06:44,707 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-01:06:44,711 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-01:06:53,169 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-01:06:54,945 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/outputnode". 190723-01:06:54,948 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-01:06:54,953 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.outputnode". 190723-01:06:57,927 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-01:06:57,931 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-01:06:59,710 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-01:07:01,234 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-01:07:01,237 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-01:07:08,261 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-01:07:09,71 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-01:07:09,75 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-01:07:09,303 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-01:07:10,892 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-01:07:10,907 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-01:07:19,523 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-01:07:20,773 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-01:07:20,779 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:07:20,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-01:07:22,975 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-01:07:22,979 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-01:07:23,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-01:07:24,741 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-01:07:24,744 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:07:24,783 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-01:07:26,869 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-01:07:26,872 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-01:07:27,130 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-01:07:29,164 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-01:07:29,167 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-01:07:29,374 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-01:07:48,421 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_to_std_transform". 190723-01:07:50,848 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-01:07:50,859 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-01:07:50,872 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-01:07:50,877 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-01:08:11,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_to_std_transform". 190723-01:08:12,830 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-01:08:12,833 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-01:08:14,358 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.merge". 190723-01:08:16,667 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.merge". 190723-01:08:39,202 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-01:08:39,205 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-01:08:39,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-01:08:44,267 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-01:08:44,272 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-01:08:44,290 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-01:08:44,712 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-01:08:44,715 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-01:08:46,719 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-01:08:46,721 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-01:08:47,405 nipype.interface INFO: stderr 2019-07-23T01:08:47.405640:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-01:08:47,406 nipype.interface INFO: stderr 2019-07-23T01:08:47.405640:++ Authored by: RW Cox 190723-01:08:47,406 nipype.interface INFO: stderr 2019-07-23T01:08:47.406321:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge/vol0000_xform-00000_merged.nii.gz to FLOAT32 190723-01:08:47,406 nipype.interface INFO: stderr 2019-07-23T01:08:47.406321: Warnings of this type will be muted for this session. 190723-01:08:47,406 nipype.interface INFO: stderr 2019-07-23T01:08:47.406321: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-01:08:47,915 nipype.interface INFO: stderr 2019-07-23T01:08:47.915080:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-01:08:47,915 nipype.interface INFO: stderr 2019-07-23T01:08:47.915080:++ Authored by: RW Cox 190723-01:08:47,915 nipype.interface INFO: stderr 2019-07-23T01:08:47.915626:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/slice.nii.gz to FLOAT32 190723-01:08:47,915 nipype.interface INFO: stderr 2019-07-23T01:08:47.915626: Warnings of this type will be muted for this session. 190723-01:08:47,916 nipype.interface INFO: stderr 2019-07-23T01:08:47.915626: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-01:09:46,642 nipype.interface INFO: stderr 2019-07-23T01:09:46.642256:++ Max displacement in automask = 0.21 (mm) at sub-brick 2 190723-01:09:46,642 nipype.interface INFO: stderr 2019-07-23T01:09:46.642256:++ Max delta displ in automask = 0.17 (mm) at sub-brick 5 190723-01:09:51,373 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-01:09:52,408 nipype.interface INFO: stderr 2019-07-23T01:09:52.408369:++ Max displacement in automask = 0.26 (mm) at sub-brick 15 190723-01:09:52,408 nipype.interface INFO: stderr 2019-07-23T01:09:52.408369:++ Max delta displ in automask = 0.28 (mm) at sub-brick 4 190723-01:09:54,293 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-01:09:54,339 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-01:09:58,33 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-01:09:59,75 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-01:09:59,81 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-01:10:07,650 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-01:10:08,746 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/outputnode". 190723-01:10:08,749 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-01:10:08,755 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.outputnode". 190723-01:10:11,656 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-01:10:11,661 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-01:10:13,391 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-01:10:15,98 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-01:10:15,101 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-01:10:21,847 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-01:10:22,727 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-01:10:22,730 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-01:10:22,970 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-01:10:24,736 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-01:10:24,743 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-01:10:32,384 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-01:10:34,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-01:10:34,776 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:10:34,878 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-01:10:36,786 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-01:10:36,789 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-01:10:37,726 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-01:10:38,732 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-01:10:38,736 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:10:38,775 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-01:10:40,944 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-01:10:40,948 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-01:10:41,96 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-01:10:42,749 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-01:10:42,754 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memoryb_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-01:10:42,952 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-01:10:46,742 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-01:10:46,745 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-01:10:55,204 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-01:10:56,845 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/outputnode". 190723-01:10:56,848 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-01:10:56,853 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.outputnode". 190723-01:10:59,833 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-01:10:59,836 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-01:11:01,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-01:11:02,767 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-01:11:02,771 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-01:11:09,716 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-01:11:10,807 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-01:11:10,810 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-01:11:11,134 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-01:11:12,914 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-01:11:12,918 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-01:11:20,408 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-01:11:23,126 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-01:11:23,132 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:11:23,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-01:11:24,862 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-01:11:24,866 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-01:11:25,407 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-01:11:27,132 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-01:11:27,134 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:11:27,205 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-01:11:29,80 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-01:11:29,108 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-01:11:29,362 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-01:11:30,974 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-01:11:30,978 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-01:11:31,347 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-01:25:52,7 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_to_std_transform". 190723-01:25:53,737 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-01:25:53,793 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-01:25:54,138 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-01:25:54,172 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-01:30:20,637 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.merge". 190723-01:33:30,723 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190723-01:34:19,789 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-01:34:19,794 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-01:34:19,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-01:34:20,269 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-01:34:20,292 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-01:34:22,237 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-01:34:22,239 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-01:34:25,644 nipype.interface INFO: stderr 2019-07-23T01:34:25.644103:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-01:34:25,644 nipype.interface INFO: stderr 2019-07-23T01:34:25.644103:++ Authored by: RW Cox 190723-01:34:25,652 nipype.interface INFO: stderr 2019-07-23T01:34:25.652000:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/slice.nii.gz to FLOAT32 190723-01:34:25,652 nipype.interface INFO: stderr 2019-07-23T01:34:25.652000: Warnings of this type will be muted for this session. 190723-01:34:25,652 nipype.interface INFO: stderr 2019-07-23T01:34:25.652000: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-01:35:29,292 nipype.interface INFO: stderr 2019-07-23T01:35:29.292092:++ Max displacement in automask = 0.19 (mm) at sub-brick 4 190723-01:35:29,292 nipype.interface INFO: stderr 2019-07-23T01:35:29.292092:++ Max delta displ in automask = 0.24 (mm) at sub-brick 3 190723-01:35:34,382 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-01:35:37,763 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-01:35:37,810 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-01:36:18,776 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.merge". 190723-01:36:20,288 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-01:36:20,293 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-01:36:29,259 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-01:36:30,297 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/outputnode". 190723-01:36:30,303 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-01:36:30,308 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.outputnode". 190723-01:36:33,272 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-01:36:33,276 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-01:36:35,126 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-01:36:36,286 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-01:36:36,291 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-01:36:43,644 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-01:36:44,302 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-01:36:44,307 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-01:36:44,572 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-01:36:46,299 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-01:36:46,304 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-01:36:53,124 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-01:36:54,306 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-01:36:54,310 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:36:54,414 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-01:36:56,331 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-01:36:56,338 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-01:36:56,911 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-01:36:58,305 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-01:36:58,311 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:36:58,349 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-01:37:00,308 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-01:37:00,311 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-01:37:00,565 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-01:37:02,338 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-01:37:02,343 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_4_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-01:37:02,694 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-01:38:59,162 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-01:38:59,166 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-01:38:59,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-01:39:01,550 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-01:39:01,553 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-01:39:03,497 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-01:39:07,563 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-01:39:07,578 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-01:39:16,996 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-01:39:17,570 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/outputnode". 190723-01:39:17,575 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-01:39:17,581 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.outputnode". 190723-01:39:20,332 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-01:39:20,336 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-01:39:22,270 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-01:39:23,566 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-01:39:23,569 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-01:39:30,587 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-01:39:31,582 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-01:39:31,588 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-01:39:31,928 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-01:39:33,571 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-01:39:33,615 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-01:39:40,949 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-01:39:41,582 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-01:39:41,585 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:39:41,699 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-01:39:43,578 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-01:39:43,585 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-01:39:44,66 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-01:39:45,580 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-01:39:45,582 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-01:39:45,620 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-01:39:47,601 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-01:39:47,605 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-01:39:47,787 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-01:39:49,584 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-01:39:49,588 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-01:39:49,928 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-01:50:47,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_to_std_transform". 190723-01:50:50,229 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-01:50:50,285 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-01:50:50,304 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-01:50:50,313 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-01:52:37,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_to_std_transform". 190723-01:52:38,342 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-01:52:38,360 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-01:53:02,717 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.merge". 190723-01:53:29,556 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-01:53:29,559 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-01:53:29,646 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-01:53:31,943 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-01:53:31,945 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-01:53:33,846 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-01:53:37,106 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-01:53:37,130 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-01:54:57,334 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.merge". 190723-01:58:47,818 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-01:58:47,823 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-01:58:47,922 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-01:58:50,203 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-01:58:50,208 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-01:58:53,820 nipype.interface INFO: stderr 2019-07-23T01:58:53.820290:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-01:58:53,820 nipype.interface INFO: stderr 2019-07-23T01:58:53.820290:++ Authored by: RW Cox 190723-01:58:53,820 nipype.interface INFO: stderr 2019-07-23T01:58:53.820929:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/slice.nii.gz to FLOAT32 190723-01:58:53,821 nipype.interface INFO: stderr 2019-07-23T01:58:53.820929: Warnings of this type will be muted for this session. 190723-01:58:53,821 nipype.interface INFO: stderr 2019-07-23T01:58:53.820929: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-02:00:01,110 nipype.interface INFO: stderr 2019-07-23T02:00:01.110616:++ Max displacement in automask = 0.27 (mm) at sub-brick 18 190723-02:00:01,110 nipype.interface INFO: stderr 2019-07-23T02:00:01.110616:++ Max delta displ in automask = 0.25 (mm) at sub-brick 16 190723-02:00:06,519 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-02:00:09,118 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-02:00:09,124 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-02:00:17,609 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-02:00:18,292 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-02:00:18,297 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-02:00:26,802 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-02:00:28,310 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/outputnode". 190723-02:00:28,313 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-02:00:28,318 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.outputnode". 190723-02:00:31,271 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-02:00:31,275 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-02:00:32,984 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-02:00:34,305 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-02:00:34,309 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-02:00:41,373 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-02:00:42,303 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-02:00:42,307 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-02:00:42,696 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-02:00:44,309 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-02:00:44,313 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-02:00:52,160 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-02:00:54,315 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-02:00:54,318 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-02:00:54,435 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-02:00:56,322 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-02:00:56,327 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-02:00:56,893 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-02:00:58,320 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-02:00:58,323 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-02:00:58,364 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-02:01:00,318 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-02:01:00,321 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-02:01:00,506 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-02:01:02,325 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-02:01:02,330 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-02:01:02,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-02:01:04,337 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/outputnode". 190723-02:01:04,340 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-02:01:04,345 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.outputnode". 190723-02:01:07,80 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-02:01:07,83 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-02:01:08,808 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-02:01:10,329 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-02:01:10,333 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-02:01:17,426 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-02:01:18,334 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-02:01:18,338 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-02:01:18,548 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-02:01:20,327 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-02:01:20,331 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-02:01:20,905 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190723-02:01:22,373 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-02:01:22,395 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-02:01:27,108 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-02:01:28,400 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-02:01:28,403 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-02:01:28,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-02:01:30,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-02:01:30,396 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-02:01:30,930 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-02:01:32,405 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-02:01:32,408 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-02:01:32,445 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-02:01:34,392 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-02:01:34,397 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-02:01:34,550 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-02:01:36,350 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-02:01:36,353 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_2_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-02:01:36,585 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-02:01:38,553 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-02:01:38,560 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-02:03:24,922 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_to_std_transform". 190723-02:03:26,688 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-02:03:26,695 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-02:03:27,516 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.merge". 190723-02:03:49,464 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.merge". 190723-02:05:18,367 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-02:05:18,371 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-02:05:18,425 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-02:05:43,44 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-02:05:43,49 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-02:05:43,133 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-02:05:43,522 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-02:05:43,525 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-02:05:45,583 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-02:05:45,585 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-02:05:46,800 nipype.interface INFO: stderr 2019-07-23T02:05:46.800508:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-02:05:46,800 nipype.interface INFO: stderr 2019-07-23T02:05:46.800508:++ Authored by: RW Cox 190723-02:05:46,800 nipype.interface INFO: stderr 2019-07-23T02:05:46.800924:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/slice.nii.gz to FLOAT32 190723-02:05:46,800 nipype.interface INFO: stderr 2019-07-23T02:05:46.800924: Warnings of this type will be muted for this session. 190723-02:05:46,801 nipype.interface INFO: stderr 2019-07-23T02:05:46.800924: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-02:05:47,161 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-02:05:50,910 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-02:05:50,957 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-02:06:53,782 nipype.interface INFO: stderr 2019-07-23T02:06:53.782754:++ Max displacement in automask = 0.27 (mm) at sub-brick 2 190723-02:06:53,782 nipype.interface INFO: stderr 2019-07-23T02:06:53.782754:++ Max delta displ in automask = 0.29 (mm) at sub-brick 2 190723-02:06:59,111 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-02:07:02,475 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-02:07:02,479 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-02:07:11,307 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-02:07:13,517 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-02:07:13,521 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-02:07:21,899 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-02:07:23,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/outputnode". 190723-02:07:23,537 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-02:07:23,543 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.outputnode". 190723-02:07:26,536 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-02:07:26,541 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-02:07:28,437 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-02:07:29,523 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-02:07:29,526 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-02:07:36,413 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-02:07:37,540 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-02:07:37,544 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-02:07:37,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-02:07:39,549 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-02:07:39,556 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-02:07:46,890 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-02:07:47,544 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-02:07:47,549 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-02:07:47,663 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-02:07:49,545 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-02:07:49,548 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-02:07:49,991 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-02:07:51,540 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-02:07:51,542 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-02:07:51,578 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-02:07:53,553 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-02:07:53,556 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-02:07:53,770 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-02:07:55,540 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-02:07:55,543 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-02:07:55,893 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-02:07:57,552 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/outputnode". 190723-02:07:57,555 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-02:07:57,561 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.outputnode". 190723-02:08:00,330 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-02:08:00,333 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-02:08:02,535 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-02:08:03,551 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-02:08:03,557 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-02:08:10,386 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-02:08:11,563 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-02:08:11,568 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-02:08:11,860 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-02:08:13,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-02:08:13,564 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-02:08:21,40 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-02:08:21,586 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-02:08:21,589 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-02:08:21,707 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-02:08:23,572 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-02:08:23,576 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-02:08:24,469 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-02:08:25,576 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-02:08:25,580 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-02:08:25,617 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-02:08:27,584 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-02:08:27,588 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-02:08:27,849 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-02:08:29,574 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-02:08:29,577 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memorya_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-02:08:29,925 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-02:21:14,172 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_to_std_transform". 190723-02:21:16,450 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-02:21:16,497 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-02:25:22,504 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.merge". 190723-02:28:53,735 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-02:28:53,740 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-02:28:53,761 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-02:28:56,161 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-02:28:56,167 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-02:28:59,953 nipype.interface INFO: stderr 2019-07-23T02:28:59.953089:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190723-02:28:59,953 nipype.interface INFO: stderr 2019-07-23T02:28:59.953089:++ Authored by: RW Cox 190723-02:28:59,953 nipype.interface INFO: stderr 2019-07-23T02:28:59.953751:** AFNI converts NIFTI_datatype=4 (INT16) in file /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/slice.nii.gz to FLOAT32 190723-02:28:59,954 nipype.interface INFO: stderr 2019-07-23T02:28:59.953751: Warnings of this type will be muted for this session. 190723-02:28:59,954 nipype.interface INFO: stderr 2019-07-23T02:28:59.953751: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 190723-02:30:00,477 nipype.interface INFO: stderr 2019-07-23T02:30:00.477495:++ Max displacement in automask = 0.19 (mm) at sub-brick 17 190723-02:30:00,477 nipype.interface INFO: stderr 2019-07-23T02:30:00.477495:++ Max delta displ in automask = 0.26 (mm) at sub-brick 11 190723-02:30:05,216 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-02:30:08,485 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_to_std_transform" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190723-02:30:08,587 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190723-03:01:47,715 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_to_std_transform". 190723-03:01:48,754 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-03:01:48,759 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-03:01:48,951 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.merge" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190723-03:01:49,56 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190723-03:01:56,780 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-03:01:58,796 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/outputnode". 190723-03:01:58,801 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-03:01:58,807 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.outputnode". 190723-03:01:59,919 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-03:01:59,925 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-03:02:01,557 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-03:02:02,767 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-03:02:02,771 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-03:02:09,120 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-03:02:10,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-03:02:10,795 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-03:02:11,26 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-03:02:12,815 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-03:02:12,820 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-03:02:19,583 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-03:02:20,826 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-03:02:20,830 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-03:02:20,940 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-03:02:22,802 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-03:02:22,806 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-03:02:23,301 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-03:02:24,781 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-03:02:24,785 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-03:02:24,823 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-03:02:26,882 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-03:02:26,886 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-03:02:27,41 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-03:02:28,794 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-03:02:28,798 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_Memory_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-03:02:29,20 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-03:11:45,981 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.merge". 190723-03:19:29,718 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190723-03:19:29,730 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190723-03:19:29,831 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.validate". 190723-03:19:32,330 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190723-03:19:32,335 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190723-03:19:34,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190723-03:19:38,329 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190723-03:19:38,340 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190723-03:19:47,32 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190723-03:19:48,360 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.outputnode" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/outputnode". 190723-03:19:48,365 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190723-03:19:48,372 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.outputnode". 190723-03:19:49,316 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190723-03:19:49,320 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190723-03:19:51,81 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190723-03:19:52,357 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190723-03:19:52,361 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190723-03:19:59,407 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190723-03:20:00,356 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190723-03:20:00,363 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190723-03:20:00,586 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190723-03:20:02,370 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190723-03:20:02,375 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190723-03:20:09,886 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190723-03:20:12,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190723-03:20:12,354 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190723-03:20:12,462 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190723-03:20:14,378 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190723-03:20:14,408 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190723-03:20:14,982 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190723-03:20:16,371 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190723-03:20:16,374 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190723-03:20:16,415 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190723-03:20:18,390 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190723-03:20:18,396 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190723-03:20:18,570 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190723-03:20:20,348 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190723-03:20:20,353 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /gpfs/ysm/scratch60/oad4/work/fmriprep_wf/single_subject_1468_wf/func_preproc_ses_1_task_INF_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190723-03:20:20,597 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190723-03:20:23,751 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:23,764 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_rest_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:23,778 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:23,791 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memoryb_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:23,805 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:23,819 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memorya_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:23,832 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:23,847 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_4_task_Memory_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:23,861 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:23,875 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_rest_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:23,890 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:23,907 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memory_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:23,924 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:23,941 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_2_task_Memorya_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:23,958 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:23,976 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_rest_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:23,994 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:24,11 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memorya_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:24,29 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:24,47 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_Memory_wf.bold_surf_wf.sampler.aI.a0 190723-03:20:24,65 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.sampler.aI.a1 190723-03:20:24,83 nipype.workflow ERROR: could not run node: fmriprep_wf.single_subject_1468_wf.func_preproc_ses_1_task_INF_wf.bold_surf_wf.sampler.aI.a0 fMRIPrep failed: Workflow did not execute cleanly. Check log for details Preprocessing did not finish successfully. Errors occurred while processing data from participants: 1468 (22). Check the HTML reports for details. /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0]