Node: fmriprep_wf.single_subject_201_wf.func_preproc_task_face_wf.bold_stc_wf.slice_timing_correction Working directory: /scratch/fmriprep_wf/single_subject_201_wf/func_preproc_task_face_wf/bold_stc_wf/slice_timing_correction Node inputs: args = environ = {} ignore = 0 in_file = /scratch/fmriprep_wf/single_subject_201_wf/func_preproc_task_face_wf/bold_reference_wf/validate/sub-201_task-face_bold_valid.nii.gz interp = num_threads = 1 out_file = outputtype = NIFTI_GZ rlt = rltplus = slice_encoding_direction = k slice_timing = [0.0, 1.5375, 0.0825, 1.6175, 0.1625, 1.6975, 0.2425, 1.78, 0.325, 1.86, 0.405, 1.94, 0.485, 2.0225, 0.5675, 2.1025, 0.6475, 2.1825, 0.7275, 2.265, 0.81, 2.345, 0.89, 2.4275, 0.97, 2.5075, 1.0525, 2.5875, 1.1325, 2.67, 1.2125, 2.75, 1.295, 2.83, 1.375, 2.9125, 1.455] tpattern = tr = 3s tslice = tzero = Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.6/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.6/site-packages/nipype/interfaces/base/core.py", line 522, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.6/site-packages/nipype/interfaces/afni/base.py", line 110, in _run_interface return super(AFNICommandBase, self)._run_interface(runtime) File "/usr/local/miniconda/lib/python3.6/site-packages/nipype/interfaces/base/core.py", line 1038, in _run_interface self.raise_exception(runtime) File "/usr/local/miniconda/lib/python3.6/site-packages/nipype/interfaces/base/core.py", line 975, in raise_exception ).format(**runtime.dictcopy())) RuntimeError: Command: 3dTshift -ignore 0 -prefix sub-201_task-face_bold_valid_tshift.nii.gz -tpattern @slice_timing.1D -TR 3s /scratch/fmriprep_wf/single_subject_201_wf/func_preproc_task_face_wf/bold_stc_wf/slice_timing_correction/sub-201_task-face_bold_valid.nii.gz Standard output: Standard error: ++ 3dTshift: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] *+ WARNING: If you are performing spatial transformations on an oblique dset, such as /scratch/fmriprep_wf/single_subject_201_wf/func_preproc_task_face_wf/bold_stc_wf/slice_timing_correction/sub-201_task-face_bold_valid.nii.gz, or viewing/combining it with volumes of differing obliquity, you should consider running: 3dWarp -deoblique on this and other oblique datasets in the same session. See 3dWarp -help for details. ++ Oblique dataset:/scratch/fmriprep_wf/single_subject_201_wf/func_preproc_task_face_wf/bold_stc_wf/slice_timing_correction/sub-201_task-face_bold_valid.nii.gz is 22.372089 degrees from plumb. ** FATAL ERROR: tpattern file slice_timing.1D has 37 values but have 80 slices ** Program compile date = Jun 12 2017 Return code: 1