Captured warning (): sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. Making sure the input data is BIDS compliant (warnings can be ignored in most cases). bids-validator does not appear to be installed 190731-19:18:27,91 nipype.workflow IMPORTANT: Running fMRIPREP version 1.4.1: * BIDS dataset path: /group/dml/alex/CamCAN_Alex/CamCan. * Participant list: ['CC110069']. * Run identifier: 20190731-191612_10e73c5c-81cd-4fe1-ac4d-7dd4d76e4ed1. 190731-19:18:36,186 nipype.workflow IMPORTANT: Creating bold processing workflow for "/group/dml/alex/CamCAN_Alex/CamCan/sub-CC110069/func/sub-CC110069_task-Movie_bold.nii.gz" (0.02 GB / 193 TRs). Memory resampled/largemem=0.10/0.15 GB. 190731-19:18:37,49 nipype.workflow IMPORTANT: No single-band-reference found for sub-CC110069_task-Movie_bold.nii.gz 190731-19:18:41,956 nipype.workflow IMPORTANT: Slice-timing correction will be included. 190731-19:18:45,794 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will open access to more function 190731-19:18:45,807 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will open access to more function 190731-19:18:45,812 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will open access to more models /home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. warnings.warn(msg, category=DeprecationWarning) /home/wbreilly/.local/lib/python3.6/site-packages/bids/layout/layout.py:62: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['suffix'] instead of .suffix. % (attr, attr)) Process Process-2: Traceback (most recent call last): File "/share/apps/python3-3.6.1/lib/python3.6/multiprocessing/process.py", line 249, in _bootstrap self.run() File "/share/apps/python3-3.6.1/lib/python3.6/multiprocessing/process.py", line 93, in run self._target(*self._args, **self._kwargs) File "/home/wbreilly/.local/lib/python3.6/site-packages/fmriprep/cli/run.py", line 610, in build_workflow work_dir=str(work_dir), File "/home/wbreilly/.local/lib/python3.6/site-packages/fmriprep/workflows/base.py", line 259, in init_fmriprep_wf use_syn=use_syn, File "/home/wbreilly/.local/lib/python3.6/site-packages/fmriprep/workflows/base.py", line 609, in init_single_subject_wf use_syn=use_syn, File "/home/wbreilly/.local/lib/python3.6/site-packages/fmriprep/workflows/bold/base.py", line 551, in init_func_preproc_wf if 'MNI152NLin2009cAsym' in volume_std_spaces else next(iter(volume_std_spaces)) StopIteration