WARNING: Not mounting /tmp (already mounted in container)  1: [WARN] The Authors field of dataset_description.json should contain an array of fields - with one author per field. This was triggered based on the presence of only one author field. Please ignore if all contributors are already properly listed. (code: 102 - TOO_FEW_AUTHORS)  Please visit https://neurostars.org/search?q=TOO_FEW_AUTHORS for existing conversations about this issue. Summary: Available Tasks: Available Modalities: 2854 Files, 25.19GB rest T1w 390 - Subjects dwi 1 - Session bold  If you have any questions, please post on https://neurostars.org/tags/bids. Making sure the input data is BIDS compliant (warnings can be ignored in most cases). 190801-11:14:37,590 nipype.workflow IMPORTANT: Running fMRIPREP version 1.4.1: * BIDS dataset path: /CALM_BIDS_New_2. * Participant list: ['001']. * Run identifier: 20190801-111436_c41c369c-cc95-4f7f-89a9-0e3ff6b9206a. 190801-11:14:43,27 nipype.workflow IMPORTANT: Creating bold processing workflow for "/CALM_BIDS_New_2/sub-001/func/sub-001_task-rest_bold.nii.gz" (0.03 GB / 270 TRs). Memory resampled/largemem=0.13/0.21 GB. 190801-11:14:43,38 nipype.workflow IMPORTANT: No single-band-reference found for sub-001_task-rest_bold.nii.gz 190801-11:14:48,237 nipype.workflow IMPORTANT: Slice-timing correction will be included. 190801-11:14:48,250 nipype.workflow WARNING: SDC: no fieldmaps found or they were ignored (/CALM_BIDS_New_2/sub-001/func/sub-001_task-rest_bold.nii.gz). 190801-11:14:48,833 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 190801-11:14:51,829 nipype.workflow IMPORTANT: Works derived from this fMRIPrep execution should include the following boilerplate: Results included in this manuscript come from preprocessing performed using *fMRIPrep* 1.4.1 (@fmriprep1; @fmriprep2; RRID:SCR_016216), which is based on *Nipype* 1.2.0 (@nipype1; @nipype2; RRID:SCR_002502). Anatomical data preprocessing : The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU) with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.2.0 [@ants, RRID:SCR_004757], and used as T1w-reference throughout the workflow. The T1w-reference was then skull-stripped with a *Nipype* implementation of the `antsBrainExtraction.sh` workflow (from ANTs), using MNIPediatricAsym as target template. Brain tissue segmentation of cerebrospinal fluid (CSF), white-matter (WM) and gray-matter (GM) was performed on the brain-extracted T1w using `fast` [FSL 5.0.9, RRID:SCR_002823, @fsl_fast]. Brain surfaces were reconstructed using `recon-all` [FreeSurfer 6.0.1, RRID:SCR_001847, @fs_reconall], and the brain mask estimated previously was refined with a custom variation of the method to reconcile ANTs-derived and FreeSurfer-derived segmentations of the cortical gray-matter of Mindboggle [RRID:SCR_002438, @mindboggle]. Volume-based spatial normalization to three standard spaces (MNIPediatricAsym, MNI152NLin6Asym, MNI152NLin2009cAsym) was performed through nonlinear registration with `antsRegistration` (ANTs 2.2.0), using brain-extracted versions of both T1w reference and the T1w template. The following templates were selected for spatial normalization: *MNI's unbiased standard MRI template for pediatric data from the 4.5 to 18.5y age range* [@mnipediatricasym, RRID:SCR_008796; TemplateFlow ID: MNIPediatricAsym], *FSL's MNI ICBM 152 non-linear 6th Generation Asymmetric Average Brain Stereotaxic Registration Model* [@mni152nlin6asym, RRID:SCR_002823; TemplateFlow ID: MNI152NLin6Asym], *ICBM 152 Nonlinear Asymmetrical template version 2009c* [@mni152nlin2009casym, RRID:SCR_008796; TemplateFlow ID: MNI152NLin2009cAsym]. Functional data preprocessing : For each of the 1 BOLD runs found per subject (across all tasks and sessions), the following preprocessing was performed. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. The BOLD reference was then co-registered to the T1w reference using `bbregister` (FreeSurfer) which implements boundary-based registration [@bbr]. Co-registration was configured with nine degrees of freedom to account for distortions remaining in the BOLD reference. Head-motion parameters with respect to the BOLD reference (transformation matrices, and six corresponding rotation and translation parameters) are estimated before any spatiotemporal filtering using `mcflirt` [FSL 5.0.9, @mcflirt]. BOLD runs were slice-time corrected using `3dTshift` from AFNI 20160207 [@afni, RRID:SCR_005927]. The BOLD time-series, were resampled to surfaces on the following spaces: *fsaverage*. The BOLD time-series (including slice-timing correction when applied) were resampled onto their original, native space by applying a single, composite transform to correct for head-motion and susceptibility distortions. These resampled BOLD time-series will be referred to as *preprocessed BOLD in original space*, or just *preprocessed BOLD*. The BOLD time-series were resampled into several standard spaces, correspondingly generating the following *spatially-normalized, preprocessed BOLD runs*: MNIPediatricAsym, MNI152NLin6Asym, MNI152NLin2009cAsym. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. Automatic removal of motion artifacts using independent component analysis [ICA-AROMA, @aroma] was performed on the *preprocessed BOLD on MNI space* time-series after removal of non-steady state volumes and spatial smoothing with an isotropic, Gaussian kernel of 6mm FWHM (full-width half-maximum). Corresponding "non-aggresively" denoised runs were produced after such smoothing. Additionally, the "aggressive" noise-regressors were collected and placed in the corresponding confounds file. Several confounding time-series were calculated based on the *preprocessed BOLD*: framewise displacement (FD), DVARS and three region-wise global signals. FD and DVARS are calculated for each functional run, both using their implementations in *Nipype* [following the definitions by @power_fd_dvars]. The three global signals are extracted within the CSF, the WM, and the whole-brain masks. Additionally, a set of physiological regressors were extracted to allow for component-based noise correction [*CompCor*, @compcor]. Principal components are estimated after high-pass filtering the *preprocessed BOLD* time-series (using a discrete cosine filter with 128s cut-off) for the two *CompCor* variants: temporal (tCompCor) and anatomical (aCompCor). tCompCor components are then calculated from the top 5% variable voxels within a mask covering the subcortical regions. This subcortical mask is obtained by heavily eroding the brain mask, which ensures it does not include cortical GM regions. For aCompCor, components are calculated within the intersection of the aforementioned mask and the union of CSF and WM masks calculated in T1w space, after their projection to the native space of each functional run (using the inverse BOLD-to-T1w transformation). Components are also calculated separately within the WM and CSF masks. For each CompCor decomposition, the *k* components with the largest singular values are retained, such that the retained components' time series are sufficient to explain 50 percent of variance across the nuisance mask (CSF, WM, combined, or temporal). The remaining components are dropped from consideration. The head-motion estimates calculated in the correction step were also placed within the corresponding confounds file. The confound time series derived from head motion estimates and global signals were expanded with the inclusion of temporal derivatives and quadratic terms for each [@confounds_satterthwaite_2013]. Frames that exceeded a threshold of 0.5 mm FD or 0.5 standardised DVARS were annotated as motion outliers. All resamplings can be performed with *a single interpolation step* by composing all the pertinent transformations (i.e. head-motion transform matrices, susceptibility distortion correction when available, and co-registrations to anatomical and output spaces). Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs), configured with Lanczos interpolation to minimize the smoothing effects of other kernels [@lanczos]. Non-gridded (surface) resamplings were performed using `mri_vol2surf` (FreeSurfer). Many internal operations of *fMRIPrep* use *Nilearn* 0.5.2 [@nilearn, RRID:SCR_001362], mostly within the functional processing workflow. For more details of the pipeline, see [the section corresponding to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation"). ### References pandoc-citeproc: reference mnipediatricasym not found 190801-11:15:01,735 nipype.workflow INFO: Generated workflow graph: /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/graph.svg (graph2use=colored, simple_form=True). 190801-11:15:06,317 nipype.workflow INFO: Workflow fmriprep_wf settings: ['check', 'execution', 'logging', 'monitoring'] 190801-11:15:06,538 nipype.workflow INFO: Running in parallel. 190801-11:15:06,548 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:15:06,621 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_specs". 190801-11:15:06,627 nipype.workflow INFO: [Node] Running "tpl_specs" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:06,633 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs". 190801-11:15:06,633 nipype.workflow INFO: [Job 0] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs). 190801-11:15:06,701 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_specs". 190801-11:15:06,707 nipype.workflow INFO: [Node] Running "tpl_specs" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:06,711 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs". 190801-11:15:06,711 nipype.workflow INFO: [Job 3] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs). 190801-11:15:06,778 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_specs". 190801-11:15:06,784 nipype.workflow INFO: [Node] Running "tpl_specs" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:06,789 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs". 190801-11:15:06,789 nipype.workflow INFO: [Job 6] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_specs). 190801-11:15:06,879 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.about" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/about". 190801-11:15:06,883 nipype.workflow INFO: [Node] Running "about" ("fmriprep.interfaces.reports.AboutSummary") 190801-11:15:06,888 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.about". 190801-11:15:06,888 nipype.workflow INFO: [Job 64] Completed (fmriprep_wf.single_subject_001_wf.about). 190801-11:15:06,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.fsdir_run_20190801_111436_c41c369c_cc95_4f7f_89a9_0e3ff6b9206a" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/fsdir_run_20190801_111436_c41c369c_cc95_4f7f_89a9_0e3ff6b9206a". 190801-11:15:06,985 nipype.workflow INFO: [Node] Running "fsdir_run_20190801_111436_c41c369c_cc95_4f7f_89a9_0e3ff6b9206a" ("niworkflows.interfaces.bids.BIDSFreeSurferDir") 190801-11:15:07,422 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/raw_sources". 190801-11:15:07,433 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:07,442 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources". 190801-11:15:08,377 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl". 190801-11:15:08,377 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl". 190801-11:15:08,377 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/validate". 190801-11:15:08,390 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190801-11:15:08,390 nipype.workflow INFO: [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-MNIPediatricAsym_cohort-1_res-1_T1w_maths.nii.gz Laplacian /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz 1.5 1 190801-11:15:08,390 nipype.workflow INFO: [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz tpl-MNIPediatricAsym_cohort-1_res-1_T1w_resampled.nii.gz 4 4 4 1 190801-11:15:08,525 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.bidssrc" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/bidssrc". 190801-11:15:08,531 nipype.workflow INFO: [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber") 190801-11:15:08,531 nipype.interface WARNING: No "t2w" images found for sub- 190801-11:15:08,531 nipype.interface WARNING: No "flair" images found for sub- 190801-11:15:08,531 nipype.interface WARNING: No "fmap" images found for sub- 190801-11:15:08,531 nipype.interface WARNING: No "sbref" images found for sub- 190801-11:15:08,531 nipype.interface WARNING: No "roi" images found for sub- 190801-11:15:08,538 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.bidssrc". 190801-11:15:12,301 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.validate". 190801-11:15:13,98 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl". 190801-11:15:17,79 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl". 190801-11:15:17,541 nipype.workflow INFO: [Node] Finished "fmriprep_wf.fsdir_run_20190801_111436_c41c369c_cc95_4f7f_89a9_0e3ff6b9206a". 190801-11:15:17,541 nipype.workflow INFO: [Job 127] Completed (fmriprep_wf.fsdir_run_20190801_111436_c41c369c_cc95_4f7f_89a9_0e3ff6b9206a). 190801-11:15:17,619 nipype.workflow INFO: [Job 9] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources). 190801-11:15:17,620 nipype.workflow INFO: [Job 10] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.validate). 190801-11:15:17,621 nipype.workflow INFO: [Job 61] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl). 190801-11:15:17,622 nipype.workflow INFO: [Job 63] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl). 190801-11:15:17,622 nipype.workflow INFO: [Job 65] Completed (fmriprep_wf.single_subject_001_wf.bidssrc). 190801-11:15:17,624 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:15:17,690 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/msk_select". 190801-11:15:17,695 nipype.workflow INFO: [Node] Running "msk_select" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:17,702 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select". 190801-11:15:17,702 nipype.workflow INFO: [Job 1] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select). 190801-11:15:17,768 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_select". 190801-11:15:17,773 nipype.workflow INFO: [Node] Running "tpl_select" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:17,779 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select". 190801-11:15:17,779 nipype.workflow INFO: [Job 2] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select). 190801-11:15:17,846 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/msk_select". 190801-11:15:17,851 nipype.workflow INFO: [Node] Running "msk_select" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:17,858 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select". 190801-11:15:17,858 nipype.workflow INFO: [Job 4] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select). 190801-11:15:17,925 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_select". 190801-11:15:17,929 nipype.workflow INFO: [Node] Running "tpl_select" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:17,936 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select". 190801-11:15:17,936 nipype.workflow INFO: [Job 5] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select). 190801-11:15:18,2 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/msk_select". 190801-11:15:18,7 nipype.workflow INFO: [Node] Running "msk_select" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:18,14 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select". 190801-11:15:18,14 nipype.workflow INFO: [Job 7] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.msk_select). 190801-11:15:18,80 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_select". 190801-11:15:18,86 nipype.workflow INFO: [Node] Running "tpl_select" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:18,93 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select". 190801-11:15:18,93 nipype.workflow INFO: [Job 8] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_select). 190801-11:15:18,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_validation" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ds_report_validation". 190801-11:15:18,164 nipype.workflow INFO: [Node] Running "ds_report_validation" ("fmriprep.interfaces.DerivativesDataSink") 190801-11:15:18,172 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_validation". 190801-11:15:18,173 nipype.workflow INFO: [Job 11] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_validation). 190801-11:15:18,243 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.ds_report_about" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/ds_report_about". 190801-11:15:18,248 nipype.workflow INFO: [Node] Running "ds_report_about" ("fmriprep.interfaces.DerivativesDataSink") 190801-11:15:18,254 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.ds_report_about". 190801-11:15:18,254 nipype.workflow INFO: [Job 125] Completed (fmriprep_wf.single_subject_001_wf.ds_report_about). 190801-11:15:18,506 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl". 190801-11:15:18,510 nipype.workflow INFO: [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge") 190801-11:15:18,516 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl". 190801-11:15:19,256 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref". 190801-11:15:19,261 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190801-11:15:19,263 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions". 190801-11:15:19,267 nipype.workflow INFO: [Node] Running "t1_template_dimensions" ("niworkflows.interfaces.images.TemplateDimensions") 190801-11:15:19,337 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.bids_info" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/bids_info". 190801-11:15:19,342 nipype.workflow INFO: [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo") 190801-11:15:19,378 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions". 190801-11:15:19,622 nipype.workflow INFO: [Job 62] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl). 190801-11:15:19,623 nipype.workflow INFO: [Job 66] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions). 190801-11:15:19,625 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 167.56/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.bids_info * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190801-11:15:19,697 nipype.interface INFO: stderr 2019-08-01T11:15:19.697580:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 190801-11:15:19,697 nipype.interface INFO: stderr 2019-08-01T11:15:19.697580:++ Authored by: RW Cox 190801-11:15:19,702 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_reports_wf/ds_t1_conform_report". 190801-11:15:19,709 nipype.workflow INFO: [Node] Running "ds_t1_conform_report" ("smriprep.interfaces.DerivativesDataSink") 190801-11:15:19,716 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report". 190801-11:15:19,716 nipype.workflow INFO: [Job 67] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report). 190801-11:15:19,787 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_transforms". 190801-11:15:19,788 nipype.interface INFO: stderr 2019-08-01T11:15:19.788387:*+ WARNING: If you are performing spatial transformations on an oblique dset, 190801-11:15:19,788 nipype.interface INFO: stderr 2019-08-01T11:15:19.788387: such as /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/slice.nii.gz, 190801-11:15:19,788 nipype.interface INFO: stderr 2019-08-01T11:15:19.788387: or viewing/combining it with volumes of differing obliquity, 190801-11:15:19,788 nipype.interface INFO: stderr 2019-08-01T11:15:19.788387: you should consider running: 190801-11:15:19,788 nipype.interface INFO: stderr 2019-08-01T11:15:19.788387: 3dWarp -deoblique 190801-11:15:19,788 nipype.interface INFO: stderr 2019-08-01T11:15:19.788387: on this and other oblique datasets in the same session. 190801-11:15:19,788 nipype.interface INFO: stderr 2019-08-01T11:15:19.788387: See 3dWarp -help for details. 190801-11:15:19,788 nipype.interface INFO: stderr 2019-08-01T11:15:19.788387:++ Oblique dataset:/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/slice.nii.gz is 29.232424 degrees from plumb. 190801-11:15:19,789 nipype.interface INFO: stderr 2019-08-01T11:15:19.789227:++ Coarse del was 10, replaced with 3 190801-11:15:20,17 nipype.workflow INFO: [Node] Setting-up "_ds_t1_template_transforms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_transforms/mapflow/_ds_t1_template_transforms0". 190801-11:15:20,23 nipype.workflow INFO: [Node] Running "_ds_t1_template_transforms0" ("smriprep.interfaces.DerivativesDataSink") 190801-11:15:20,32 nipype.workflow INFO: [Node] Finished "_ds_t1_template_transforms0". 190801-11:15:20,36 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms". 190801-11:15:20,36 nipype.workflow INFO: [Job 68] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms). 190801-11:15:20,84 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.bids_info". 190801-11:15:20,367 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/t1_name". 190801-11:15:20,370 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources". 190801-11:15:20,371 nipype.workflow INFO: [Node] Running "t1_name" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:20,375 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:20,377 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.t1_name". 190801-11:15:20,380 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources". 190801-11:15:21,85 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_conform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_template_wf/t1_conform". 190801-11:15:21,90 nipype.workflow INFO: [Node] Setting-up "_t1_conform0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0". 190801-11:15:21,96 nipype.workflow INFO: [Node] Running "_t1_conform0" ("niworkflows.interfaces.images.Conform") 190801-11:15:21,128 nipype.workflow INFO: [Node] Finished "_t1_conform0". 190801-11:15:21,130 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_conform". 190801-11:15:21,624 nipype.workflow INFO: [Job 126] Completed (fmriprep_wf.single_subject_001_wf.bids_info). 190801-11:15:21,624 nipype.workflow INFO: [Job 69] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources). 190801-11:15:21,625 nipype.workflow INFO: [Job 70] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.t1_name). 190801-11:15:21,626 nipype.workflow INFO: [Job 71] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.t1_conform). 190801-11:15:21,628 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 167.76/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190801-11:15:21,707 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.summary" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/summary". 190801-11:15:21,711 nipype.workflow INFO: [Node] Running "summary" ("fmriprep.interfaces.reports.SubjectSummary") 190801-11:15:21,716 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.summary". 190801-11:15:21,716 nipype.workflow INFO: [Job 410] Completed (fmriprep_wf.single_subject_001_wf.summary). 190801-11:15:21,953 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.get1st" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_template_wf/get1st". 190801-11:15:21,957 nipype.workflow INFO: [Node] Running "get1st" ("nipype.interfaces.utility.base.Select") 190801-11:15:21,964 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.get1st". 190801-11:15:23,629 nipype.workflow INFO: [Job 72] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_template_wf.get1st). 190801-11:15:23,631 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 167.76/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190801-11:15:23,708 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_validate". 190801-11:15:23,712 nipype.workflow INFO: [Node] Running "anat_validate" ("niworkflows.interfaces.images.ValidateImage") 190801-11:15:23,724 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_validate". 190801-11:15:23,724 nipype.workflow INFO: [Job 73] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_validate). 190801-11:15:23,793 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.ds_report_summary" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/ds_report_summary". 190801-11:15:23,798 nipype.workflow INFO: [Node] Running "ds_report_summary" ("fmriprep.interfaces.DerivativesDataSink") 190801-11:15:23,804 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.ds_report_summary". 190801-11:15:23,804 nipype.workflow INFO: [Job 411] Completed (fmriprep_wf.single_subject_001_wf.ds_report_summary). 190801-11:15:25,633 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 167.76/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190801-11:15:25,972 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fov_check". 190801-11:15:25,977 nipype.workflow INFO: [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:26,332 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fov_check". 190801-11:15:26,722 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/truncate_images". 190801-11:15:26,728 nipype.workflow INFO: [Node] Setting-up "_truncate_images0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0". 190801-11:15:26,734 nipype.workflow INFO: [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths.nii.gz TruncateImageIntensity /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz 0.01 0.999 256 190801-11:15:26,824 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/recon_config". 190801-11:15:26,828 nipype.workflow INFO: [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs") 190801-11:15:26,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.recon_config". 190801-11:15:27,636 nipype.workflow INFO: [Job 74] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fov_check). 190801-11:15:27,636 nipype.workflow INFO: [Job 75] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.recon_config). 190801-11:15:27,638 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 167.56/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190801-11:15:28,31 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon1". 190801-11:15:28,37 nipype.workflow INFO: [Node] Running "autorecon1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon1 -i /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz -noskullstrip -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-11:15:29,639 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 162.56/168.76, Free processors: 14/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190801-11:15:29,743 nipype.workflow INFO: [Node] Finished "_truncate_images0". 190801-11:15:29,746 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images". 190801-11:15:31,641 nipype.workflow INFO: [Job 76] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.truncate_images). 190801-11:15:31,643 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.76/168.76, Free processors: 15/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190801-11:15:32,256 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4". 190801-11:15:32,262 nipype.workflow INFO: [Node] Setting-up "_inu_n40" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40". 190801-11:15:32,269 nipype.workflow INFO: [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-001_T1w_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-001_T1w_maths_corrected.nii.gz --shrink-factor 4 190801-11:15:33,645 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 162.56/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref 190801-11:15:35,702 nipype.interface INFO: stderr 2019-08-01T11:15:35.702373:++ Max displacement in automask = 0.32 (mm) at sub-brick 18 190801-11:15:35,702 nipype.interface INFO: stderr 2019-08-01T11:15:35.702373:++ Max delta displ in automask = 0.31 (mm) at sub-brick 18 190801-11:15:36,834 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref". 190801-11:15:37,650 nipype.workflow INFO: [Job 12] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref). 190801-11:15:37,652 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:15:37,731 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/calc_dummy_scans". 190801-11:15:37,735 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190801-11:15:37,740 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans". 190801-11:15:37,740 nipype.workflow INFO: [Job 34] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans). 190801-11:15:38,406 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/mcflirt". 190801-11:15:38,411 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/validate/sub-001_task-rest_bold_valid.nii.gz -out /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/mcflirt/sub-001_task-rest_bold_valid_mcf.nii.gz -reffile /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 190801-11:15:39,654 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.47/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:15:40,131 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.slice_timing_correction" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_stc_wf/slice_timing_correction". 190801-11:15:40,138 nipype.workflow INFO: [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command: 3dTshift -ignore 0 -prefix sub-001_task-rest_bold_valid_tshift.nii.gz -tpattern @slice_timing.1D -TR 2s /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_stc_wf/slice_timing_correction/sub-001_task-rest_bold_valid.nii.gz 190801-11:15:41,657 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 163.27/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.slice_timing_correction * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:15:48,400 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.slice_timing_correction". 190801-11:15:49,664 nipype.workflow INFO: [Job 35] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.slice_timing_correction). 190801-11:15:49,666 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.47/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:15:51,73 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.copy_xform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_stc_wf/copy_xform". 190801-11:15:51,78 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 190801-11:15:51,668 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 163.37/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.copy_xform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:15:53,67 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.copy_xform". 190801-11:15:53,669 nipype.workflow INFO: [Job 36] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_stc_wf.copy_xform). 190801-11:15:53,671 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.47/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:15:54,73 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_split" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_split". 190801-11:15:54,78 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_stc_wf/copy_xform/sub-001_task-rest_bold_valid_tshift_xform.nii.gz -t 190801-11:15:55,672 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 163.37/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_split * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:00,278 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_split". 190801-11:16:01,677 nipype.workflow INFO: [Job 37] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_split). 190801-11:16:01,679 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.47/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:11,958 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt". 190801-11:16:13,690 nipype.workflow INFO: [Job 13] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt). 190801-11:16:13,692 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:15,51 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/normalize_motion". 190801-11:16:15,55 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 190801-11:16:15,67 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion". 190801-11:16:15,692 nipype.workflow INFO: [Job 14] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion). 190801-11:16:15,695 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:15,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_motion_headers". 190801-11:16:15,777 nipype.workflow INFO: [Node] Running "add_motion_headers" ("niworkflows.interfaces.utils.AddTSVHeader") 190801-11:16:15,786 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers". 190801-11:16:15,786 nipype.workflow INFO: [Job 15] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers). 190801-11:16:16,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/fdisp". 190801-11:16:16,140 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 190801-11:16:16,162 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp". 190801-11:16:17,694 nipype.workflow INFO: [Job 16] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp). 190801-11:16:17,697 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:18,598 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/fsl2itk". 190801-11:16:18,611 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 190801-11:16:19,698 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.51/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:32,399 nipype.workflow INFO: [Node] Finished "_inu_n40". 190801-11:16:32,403 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4". 190801-11:16:33,710 nipype.workflow INFO: [Job 77] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4). 190801-11:16:33,712 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 163.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:33,809 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190801-11:16:33,815 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190801-11:16:35,713 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.51/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:37,746 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk". 190801-11:16:37,995 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190801-11:16:39,717 nipype.workflow INFO: [Job 17] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk). 190801-11:16:39,719 nipype.workflow INFO: [Job 19] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff). 190801-11:16:39,721 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 163.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:39,797 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/merge_xforms". 190801-11:16:39,802 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190801-11:16:39,807 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms". 190801-11:16:39,807 nipype.workflow INFO: [Job 18] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms). 190801-11:16:39,877 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190801-11:16:39,878 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/lap_target". 190801-11:16:39,879 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/res_target". 190801-11:16:39,884 nipype.workflow INFO: [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_maths.nii.gz Laplacian /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz 1.5 1 190801-11:16:39,886 nipype.workflow INFO: [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz sub-001_T1w_maths_corrected_resampled.nii.gz 4 4 4 1 190801-11:16:39,887 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190801-11:16:41,714 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190801-11:16:41,717 nipype.workflow INFO: [Job 20] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm). 190801-11:16:41,720 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.36/168.76, Free processors: 14/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_target * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:41,846 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_transform". 190801-11:16:41,859 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190801-11:16:42,636 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_target". 190801-11:16:42,841 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190801-11:16:42,846 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190801-11:16:43,718 nipype.workflow INFO: [Job 80] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.res_target). 190801-11:16:43,721 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 160.31/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:44,311 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190801-11:16:45,719 nipype.workflow INFO: [Job 21] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask). 190801-11:16:45,722 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 160.51/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:45,802 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190801-11:16:45,807 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190801-11:16:46,114 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190801-11:16:47,722 nipype.workflow INFO: [Job 22] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190801-11:16:47,724 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 160.51/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:47,809 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr". 190801-11:16:47,814 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190801-11:16:47,837 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190801-11:16:47,838 nipype.workflow INFO: [Job 23] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190801-11:16:49,724 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 160.51/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:49,823 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190801-11:16:49,828 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190801-11:16:50,9 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target". 190801-11:16:51,56 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190801-11:16:51,724 nipype.workflow INFO: [Job 78] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.lap_target). 190801-11:16:51,725 nipype.workflow INFO: [Job 24] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190801-11:16:51,727 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:51,815 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/mrg_target". 190801-11:16:51,819 nipype.workflow INFO: [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge") 190801-11:16:51,826 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_target". 190801-11:16:51,888 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190801-11:16:51,894 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190801-11:16:53,447 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190801-11:16:53,727 nipype.workflow INFO: [Job 25] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190801-11:16:53,727 nipype.workflow INFO: [Job 79] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.mrg_target). 190801-11:16:53,730 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:53,884 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190801-11:16:53,889 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190801-11:16:54,149 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190801-11:16:55,728 nipype.workflow INFO: [Job 26] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190801-11:16:55,731 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:55,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190801-11:16:55,879 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190801-11:16:55,932 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190801-11:16:57,731 nipype.workflow INFO: [Job 27] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190801-11:16:57,733 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:57,818 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190801-11:16:57,825 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190801-11:16:58,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190801-11:16:59,732 nipype.workflow INFO: [Job 28] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190801-11:16:59,735 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:16:59,819 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190801-11:16:59,823 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190801-11:16:59,881 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190801-11:17:01,733 nipype.workflow INFO: [Job 29] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190801-11:17:01,736 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:01,816 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190801-11:17:01,822 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190801-11:17:02,38 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190801-11:17:03,736 nipype.workflow INFO: [Job 30] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190801-11:17:03,738 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:04,613 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190801-11:17:04,617 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190801-11:17:04,658 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190801-11:17:05,737 nipype.workflow INFO: [Job 31] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190801-11:17:05,740 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:05,825 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190801-11:17:05,831 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190801-11:17:05,974 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190801-11:17:07,740 nipype.workflow INFO: [Job 32] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190801-11:17:07,742 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:07,823 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190801-11:17:07,828 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190801-11:17:07,879 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190801-11:17:09,742 nipype.workflow INFO: [Job 33] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190801-11:17:09,744 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:10,557 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/init_aff". 190801-11:17:10,562 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -m Mattes[/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-MNIPediatricAsym_cohort-1_res-1_T1w_resampled.nii.gz,/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-001_T1w_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1 190801-11:17:11,745 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 160.51/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.init_aff * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:13,353 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.init_aff". 190801-11:17:13,745 nipype.workflow INFO: [Job 81] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.init_aff). 190801-11:17:13,748 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.71/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:13,833 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/norm". 190801-11:17:13,840 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform Affine[ 0.1 ] --metric MI[ /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-MNIPediatricAsym_cohort-1_res-1_T1w_maths.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-001_T1w_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0 190801-11:17:15,749 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 157.71/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:26,278 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform". 190801-11:17:27,760 nipype.workflow INFO: [Job 38] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform). 190801-11:17:27,762 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:28,727 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/merge". 190801-11:17:28,741 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190801-11:17:29,763 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 160.38/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:40,379 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge". 190801-11:17:41,776 nipype.workflow INFO: [Job 39] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge). 190801-11:17:41,778 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:42,726 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/validate". 190801-11:17:42,731 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190801-11:17:43,779 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 160.75/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:45,845 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate". 190801-11:17:47,782 nipype.workflow INFO: [Job 40] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate). 190801-11:17:47,784 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:47,870 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 190801-11:17:47,875 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190801-11:17:48,282 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 190801-11:17:49,783 nipype.workflow INFO: [Job 41] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref). 190801-11:17:49,786 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:49,880 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 190801-11:17:49,886 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 190801-11:17:51,787 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.56/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:52,208 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 190801-11:17:53,788 nipype.workflow INFO: [Job 42] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff). 190801-11:17:53,790 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:53,880 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 190801-11:17:53,886 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 190801-11:17:55,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 190801-11:17:55,790 nipype.workflow INFO: [Job 43] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm). 190801-11:17:55,792 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:55,878 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/calc_dummy_scans". 190801-11:17:55,879 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 190801-11:17:55,883 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190801-11:17:55,885 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 190801-11:17:55,887 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans". 190801-11:17:55,887 nipype.workflow INFO: [Job 60] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans). 190801-11:17:57,293 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 190801-11:17:57,792 nipype.workflow INFO: [Job 44] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask). 190801-11:17:57,795 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:57,888 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190801-11:17:57,894 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 190801-11:17:58,64 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190801-11:17:59,795 nipype.workflow INFO: [Job 45] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190801-11:17:59,797 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:17:59,932 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr". 190801-11:18:00,37 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190801-11:18:00,59 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190801-11:18:00,59 nipype.workflow INFO: [Job 46] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190801-11:18:01,798 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:01,890 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190801-11:18:01,895 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190801-11:18:03,288 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190801-11:18:03,799 nipype.workflow INFO: [Job 47] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190801-11:18:03,801 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:03,887 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190801-11:18:03,892 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190801-11:18:05,82 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190801-11:18:05,801 nipype.workflow INFO: [Job 48] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190801-11:18:05,803 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:05,949 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190801-11:18:05,954 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190801-11:18:06,191 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190801-11:18:07,803 nipype.workflow INFO: [Job 49] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190801-11:18:07,805 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:07,892 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190801-11:18:07,897 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190801-11:18:07,989 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190801-11:18:09,805 nipype.workflow INFO: [Job 50] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190801-11:18:09,807 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:09,935 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190801-11:18:09,940 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190801-11:18:10,939 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190801-11:18:11,807 nipype.workflow INFO: [Job 51] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190801-11:18:11,809 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:12,697 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190801-11:18:12,702 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190801-11:18:12,767 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190801-11:18:13,810 nipype.workflow INFO: [Job 52] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190801-11:18:13,812 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:13,933 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190801-11:18:13,939 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190801-11:18:14,45 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190801-11:18:15,813 nipype.workflow INFO: [Job 53] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190801-11:18:15,815 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:15,901 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190801-11:18:15,905 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190801-11:18:15,928 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190801-11:18:17,816 nipype.workflow INFO: [Job 54] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190801-11:18:17,818 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:17,903 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190801-11:18:17,908 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190801-11:18:17,992 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190801-11:18:19,817 nipype.workflow INFO: [Job 55] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190801-11:18:19,820 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:19,905 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/dvars". 190801-11:18:19,906 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190801-11:18:19,910 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 190801-11:18:19,912 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190801-11:18:20,27 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190801-11:18:21,820 nipype.workflow INFO: [Job 59] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190801-11:18:21,822 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 160.55/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:28,672 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars". 190801-11:18:29,833 nipype.workflow INFO: [Job 56] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars). 190801-11:18:29,835 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:18:29,920 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_std_dvars_header". 190801-11:18:29,925 nipype.workflow INFO: [Node] Running "add_std_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader") 190801-11:18:29,931 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header". 190801-11:18:29,931 nipype.workflow INFO: [Job 57] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header). 190801-11:18:30,9 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_dvars_header". 190801-11:18:30,13 nipype.workflow INFO: [Node] Running "add_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader") 190801-11:18:30,20 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header". 190801-11:18:30,20 nipype.workflow INFO: [Job 58] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header). 190801-11:18:31,838 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 160.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1 190801-11:19:33,525 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1". 190801-11:19:33,915 nipype.workflow INFO: [Job 128] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon1). 190801-11:19:33,918 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190801-11:19:34,68 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm". 190801-11:19:34,74 nipype.workflow INFO: [Node] Running "fsnative_2_t1_xfm" ("niworkflows.interfaces.freesurfer.PatchedRobustRegister"), a CommandLine Interface with command: mri_robust_register --satit --iscale --lta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --mov /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/T1.mgz --dst /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz 190801-11:19:35,918 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.56/168.76, Free processors: 15/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190801-11:20:09,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm". 190801-11:20:09,954 nipype.workflow INFO: [Job 129] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.fsnative_2_t1_xfm). 190801-11:20:09,956 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190801-11:20:10,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm". 190801-11:20:10,941 nipype.workflow INFO: [Node] Running "t1_2_fsnative_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta --invert --outlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta 190801-11:20:11,25 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm". 190801-11:20:11,956 nipype.workflow INFO: [Job 130] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.t1_2_fsnative_xfm). 190801-11:20:11,958 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190801-11:20:12,95 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk". 190801-11:20:12,101 nipype.workflow INFO: [Node] Running "lta_2_itk" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta --outitk /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/lta_2_itk/out.txt 190801-11:20:12,203 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk". 190801-11:20:13,958 nipype.workflow INFO: [Job 131] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lta_2_itk). 190801-11:20:13,960 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190801-11:20:14,40 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsnative" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_fsnative". 190801-11:20:14,44 nipype.workflow INFO: [Node] Running "ds_t1_fsnative" ("smriprep.interfaces.DerivativesDataSink") 190801-11:20:14,50 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsnative". 190801-11:20:14,50 nipype.workflow INFO: [Job 132] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsnative). 190801-11:20:15,960 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm 190801-11:33:07,446 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm". 190801-11:33:09,108 nipype.workflow INFO: [Job 82] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.norm). 190801-11:33:09,110 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:33:09,194 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask". 190801-11:33:09,200 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask.nii.gz --interpolation Gaussian --output tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans.nii.gz --reference-image /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz --transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ] 190801-11:33:11,111 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 167.76/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask 190801-11:33:23,493 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask". 190801-11:33:25,133 nipype.workflow INFO: [Job 83] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask). 190801-11:33:25,135 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:33:25,216 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask". 190801-11:33:25,222 nipype.workflow INFO: [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command: ThresholdImage 3 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans.nii.gz tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000 190801-11:33:26,169 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask". 190801-11:33:27,137 nipype.workflow INFO: [Job 84] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask). 190801-11:33:27,139 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:33:27,223 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask". 190801-11:33:27,224 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask". 190801-11:33:27,229 nipype.workflow INFO: [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths.nii.gz MD /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled.nii.gz 2 190801-11:33:27,230 nipype.workflow INFO: [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled.nii.gz 10 190801-11:33:27,918 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask". 190801-11:33:28,377 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask". 190801-11:33:29,140 nipype.workflow INFO: [Job 85] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask). 190801-11:33:29,141 nipype.workflow INFO: [Job 86] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask). 190801-11:33:29,143 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:33:29,222 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask". 190801-11:33:29,228 nipype.workflow INFO: [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths_maths.nii.gz GetLargestComponent /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths.nii.gz 190801-11:33:30,153 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask". 190801-11:33:31,144 nipype.workflow INFO: [Job 87] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask). 190801-11:33:31,146 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:33:31,223 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos". 190801-11:33:31,230 nipype.workflow INFO: [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command: Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-001_T1w_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-001_T1w_maths_corrected_labeled.nii.gz] --use-random-seed 1 190801-11:33:33,147 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos 190801-11:34:19,748 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos". 190801-11:34:21,227 nipype.workflow INFO: [Job 88] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos). 190801-11:34:21,229 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:21,304 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm". 190801-11:34:21,310 nipype.workflow INFO: [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-001_T1w_maths_corrected_labeled.nii.gz 10 190801-11:34:22,100 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm". 190801-11:34:23,231 nipype.workflow INFO: [Job 89] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm). 190801-11:34:23,233 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:23,309 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels". 190801-11:34:23,314 nipype.workflow INFO: [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function") 190801-11:34:23,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels". 190801-11:34:25,233 nipype.workflow INFO: [Job 90] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels). 190801-11:34:25,236 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:25,314 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf". 190801-11:34:25,316 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf". 190801-11:34:25,320 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm". 190801-11:34:25,320 nipype.workflow INFO: [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-001_T1w_maths_corrected_labeled_maths_class-01.nii.gz 10 190801-11:34:25,322 nipype.workflow INFO: [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-001_T1w_maths_corrected_labeled_maths_class-01.nii.gz -10 190801-11:34:25,325 nipype.workflow INFO: [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-001_T1w_maths_corrected_labeled_maths_class-03.nii.gz 190801-11:34:25,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf". 190801-11:34:26,76 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm". 190801-11:34:26,81 nipype.workflow INFO: [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-001_T1w_maths_corrected_labeled_maths_class-02.nii.gz 190801-11:34:26,536 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm". 190801-11:34:27,237 nipype.workflow INFO: [Job 91] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf). 190801-11:34:27,238 nipype.workflow INFO: [Job 99] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm). 190801-11:34:27,240 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.36/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf 190801-11:34:27,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm". 190801-11:34:27,362 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm". 190801-11:34:27,367 nipype.workflow INFO: [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-001_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz 190801-11:34:28,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm". 190801-11:34:28,762 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf". 190801-11:34:29,240 nipype.workflow INFO: [Job 92] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf). 190801-11:34:29,241 nipype.workflow INFO: [Job 93] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm). 190801-11:34:29,242 nipype.workflow INFO: [Job 100] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm). 190801-11:34:29,244 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:29,326 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm". 190801-11:34:29,332 nipype.workflow INFO: [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-001_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz 2 190801-11:34:30,1 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm". 190801-11:34:30,6 nipype.workflow INFO: [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10 190801-11:34:30,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm". 190801-11:34:31,243 nipype.workflow INFO: [Job 101] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm). 190801-11:34:31,245 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm 190801-11:34:35,809 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm". 190801-11:34:37,251 nipype.workflow INFO: [Job 94] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm). 190801-11:34:37,253 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:37,332 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm". 190801-11:34:37,338 nipype.workflow INFO: [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-001_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-001_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz 190801-11:34:38,378 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm". 190801-11:34:39,252 nipype.workflow INFO: [Job 95] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm). 190801-11:34:39,255 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:39,332 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm". 190801-11:34:39,338 nipype.workflow INFO: [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 08_mult_gm_maths.nii.gz addtozero /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-001_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz 190801-11:34:41,257 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm 190801-11:34:42,765 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm". 190801-11:34:43,260 nipype.workflow INFO: [Job 96] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm). 190801-11:34:43,262 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:43,341 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm". 190801-11:34:43,347 nipype.workflow INFO: [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz 190801-11:34:44,223 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm". 190801-11:34:45,264 nipype.workflow INFO: [Job 97] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm). 190801-11:34:45,266 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:45,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm". 190801-11:34:45,355 nipype.workflow INFO: [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10 190801-11:34:46,46 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm". 190801-11:34:46,52 nipype.workflow INFO: [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz 190801-11:34:46,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm". 190801-11:34:47,267 nipype.workflow INFO: [Job 98] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm). 190801-11:34:47,269 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm 190801-11:34:47,386 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms". 190801-11:34:47,391 nipype.workflow INFO: [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge") 190801-11:34:47,396 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms". 190801-11:34:49,270 nipype.workflow INFO: [Job 102] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms). 190801-11:34:49,273 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm 190801-11:34:49,624 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm". 190801-11:34:51,273 nipype.workflow INFO: [Job 103] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm). 190801-11:34:51,276 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:51,395 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2". 190801-11:34:51,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm". 190801-11:34:51,400 nipype.workflow INFO: [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function") 190801-11:34:51,403 nipype.workflow INFO: [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10 190801-11:34:51,646 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2". 190801-11:34:52,283 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm". 190801-11:34:53,277 nipype.workflow INFO: [Job 104] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm). 190801-11:34:53,278 nipype.workflow INFO: [Job 105] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2). 190801-11:34:53,280 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:53,405 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7". 190801-11:34:53,412 nipype.workflow INFO: [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz 190801-11:34:55,281 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7 190801-11:34:56,678 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7". 190801-11:34:57,284 nipype.workflow INFO: [Job 106] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7). 190801-11:34:57,286 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:34:57,371 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7". 190801-11:34:57,377 nipype.workflow INFO: [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2 190801-11:34:59,288 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7 190801-11:34:59,791 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7". 190801-11:35:01,290 nipype.workflow INFO: [Job 107] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7). 190801-11:35:01,292 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:01,368 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7". 190801-11:35:01,374 nipype.workflow INFO: [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz 190801-11:35:02,564 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7". 190801-11:35:03,293 nipype.workflow INFO: [Job 108] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7). 190801-11:35:03,295 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:03,372 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7". 190801-11:35:03,377 nipype.workflow INFO: [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4 190801-11:35:04,673 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7". 190801-11:35:05,295 nipype.workflow INFO: [Job 109] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7). 190801-11:35:05,297 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:05,373 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7". 190801-11:35:05,379 nipype.workflow INFO: [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2 190801-11:35:07,298 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7 190801-11:35:11,506 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7". 190801-11:35:13,312 nipype.workflow INFO: [Job 110] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7). 190801-11:35:13,314 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:13,391 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2". 190801-11:35:13,397 nipype.workflow INFO: [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-MNIPediatricAsym_cohort-1_res-1_desc-brain_mask_trans_resampled_maths.nii.gz 190801-11:35:15,319 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2 190801-11:35:16,789 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2". 190801-11:35:17,321 nipype.workflow INFO: [Job 111] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2). 190801-11:35:17,323 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:17,406 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2". 190801-11:35:17,412 nipype.workflow INFO: [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5 190801-11:35:18,694 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2". 190801-11:35:19,326 nipype.workflow INFO: [Job 112] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2). 190801-11:35:19,328 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:19,407 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2". 190801-11:35:19,413 nipype.workflow INFO: [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5 190801-11:35:21,332 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2 190801-11:35:21,956 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2". 190801-11:35:23,334 nipype.workflow INFO: [Job 113] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2). 190801-11:35:23,336 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:23,416 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask". 190801-11:35:23,422 nipype.workflow INFO: [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10 190801-11:35:24,78 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask". 190801-11:35:25,338 nipype.workflow INFO: [Job 114] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask). 190801-11:35:25,340 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:25,418 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform". 190801-11:35:25,423 nipype.workflow INFO: [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function") 190801-11:35:25,611 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform". 190801-11:35:27,342 nipype.workflow INFO: [Job 115] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform). 190801-11:35:27,344 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:27,425 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform". 190801-11:35:27,430 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 190801-11:35:28,509 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform". 190801-11:35:28,509 nipype.workflow INFO: [Job 116] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform). 190801-11:35:29,344 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:29,419 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.sel_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/sel_wm". 190801-11:35:29,424 nipype.workflow INFO: [Node] Running "sel_wm" ("nipype.interfaces.utility.base.Select") 190801-11:35:29,429 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.sel_wm". 190801-11:35:29,430 nipype.workflow INFO: [Job 117] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.sel_wm). 190801-11:35:31,346 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:31,447 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final". 190801-11:35:31,453 nipype.workflow INFO: [Node] Setting-up "_inu_n4_final0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0". 190801-11:35:31,459 nipype.workflow INFO: [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/sub-001/anat/sub-001_T1w.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-001_T1w_corrected.nii.gz, sub-001_T1w_bias.nii.gz ] --shrink-factor 4 --weight-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz 190801-11:35:33,349 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final 190801-11:35:57,308 nipype.workflow INFO: [Node] Finished "_inu_n4_final0". 190801-11:35:57,312 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final". 190801-11:35:57,374 nipype.workflow INFO: [Job 118] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final). 190801-11:35:57,376 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:57,456 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/apply_mask". 190801-11:35:57,462 nipype.workflow INFO: [Node] Setting-up "_apply_mask0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0". 190801-11:35:57,468 nipype.workflow INFO: [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-001_T1w_corrected.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-001_T1w_corrected_masked.nii.gz 190801-11:35:58,631 nipype.workflow INFO: [Node] Finished "_apply_mask0". 190801-11:35:58,634 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.apply_mask". 190801-11:35:59,377 nipype.workflow INFO: [Job 119] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.apply_mask). 190801-11:35:59,379 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:35:59,455 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.copy_xform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform". 190801-11:35:59,460 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 190801-11:36:03,642 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.copy_xform". 190801-11:36:03,642 nipype.workflow INFO: [Job 120] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.brain_extraction_wf.copy_xform). 190801-11:36:03,745 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:36:03,815 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/trunc_mov". 190801-11:36:03,816 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/trunc_mov". 190801-11:36:03,817 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_preproc". 190801-11:36:03,822 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz 0.01 0.999 256 190801-11:36:03,822 nipype.workflow INFO: [Node] Running "ds_t1_preproc" ("smriprep.interfaces.DerivativesDataSink") 190801-11:36:03,822 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz 0.01 0.999 256 190801-11:36:04,577 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/trunc_mov". 190801-11:36:04,582 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-001_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz 0.01 0.999 256 190801-11:36:06,326 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190801-11:36:06,373 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190801-11:36:07,139 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 190801-11:36:12,289 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc". 190801-11:36:12,289 nipype.workflow INFO: [Job 124] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc). 190801-11:36:12,437 nipype.workflow INFO: [Job 121] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov). 190801-11:36:12,438 nipype.workflow INFO: [Job 122] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov). 190801-11:36:12,439 nipype.workflow INFO: [Job 123] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.trunc_mov). 190801-11:36:12,441 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern 190801-11:36:12,489 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern". 190801-11:36:12,493 nipype.workflow INFO: [Node] Running "skull_strip_extern" ("niworkflows.interfaces.freesurfer.FSInjectBrainExtracted") 190801-11:36:13,715 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern". 190801-11:36:14,440 nipype.workflow INFO: [Job 133] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern). 190801-11:36:14,442 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-11:36:14,561 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol". 190801-11:36:14,569 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-11:36:14,569 nipype.workflow INFO: [Node] Running "autorecon2_vol" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon2-volonly -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-11:36:14,570 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-11:36:16,445 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 163.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol 190801-13:52:01,520 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol". 190801-13:52:01,784 nipype.workflow INFO: [Job 134] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol). 190801-13:52:01,786 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-13:52:03,787 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-13:52:03,866 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190801-13:52:03,867 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190801-13:52:03,875 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-13:52:03,875 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-13:52:03,875 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-13:52:03,876 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-13:52:03,876 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi lh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-13:52:03,877 nipype.interface INFO: resume recon-all : recon-all -autorecon-hemi rh -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nohyporelabel -noaparc2aseg -noapas2aseg -nosegstats -nowmparc -nobalabels -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-13:52:05,790 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 158.76/168.76, Free processors: 8/24. Currently running: * _autorecon_surfs1 * _autorecon_surfs0 190801-14:52:45,564 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190801-14:52:47,76 nipype.workflow INFO: [Job 412] Completed (_autorecon_surfs0). 190801-14:52:47,78 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 163.76/168.76, Free processors: 16/24. Currently running: * _autorecon_surfs1 190801-14:55:54,623 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190801-14:55:55,447 nipype.workflow INFO: [Job 413] Completed (_autorecon_surfs1). 190801-14:55:55,448 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-14:55:55,529 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs". 190801-14:55:55,536 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 190801-14:55:55,549 nipype.interface INFO: recon-all complete : Not running 190801-14:55:55,550 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190801-14:55:55,551 nipype.interface INFO: recon-all complete : Not running 190801-14:55:55,636 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 190801-14:55:55,638 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 190801-14:55:55,648 nipype.interface INFO: recon-all complete : Not running 190801-14:55:55,649 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190801-14:55:55,650 nipype.interface INFO: recon-all complete : Not running 190801-14:55:55,718 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 190801-14:55:55,722 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs". 190801-14:55:57,449 nipype.workflow INFO: [Job 135] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs). 190801-14:55:57,451 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-14:55:59,451 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-14:55:59,529 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190801-14:55:59,530 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190801-14:55:59,537 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190801-14:55:59,537 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190801-14:55:59,537 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190801-14:55:59,538 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190801-14:55:59,539 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi rh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190801-14:55:59,539 nipype.interface INFO: resume recon-all : recon-all -autorecon3 -hemi lh -openmp 8 -subjid sub-001 -sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial 190801-14:56:01,454 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 158.76/168.76, Free processors: 8/24. Currently running: * _autorecon31 * _autorecon30 190801-15:18:46,481 nipype.workflow INFO: [Node] Finished "_autorecon31". 190801-15:18:47,360 nipype.workflow INFO: [Job 415] Completed (_autorecon31). 190801-15:18:47,362 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 163.76/168.76, Free processors: 16/24. Currently running: * _autorecon30 190801-15:19:03,756 nipype.workflow INFO: [Node] Finished "_autorecon30". 190801-15:19:05,387 nipype.workflow INFO: [Job 414] Completed (_autorecon30). 190801-15:19:05,389 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-15:19:05,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3". 190801-15:19:05,477 nipype.workflow INFO: [Node] Setting-up "_autorecon30" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon30". 190801-15:19:05,486 nipype.interface INFO: recon-all complete : Not running 190801-15:19:05,487 nipype.workflow INFO: [Node] Running "_autorecon30" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190801-15:19:05,489 nipype.interface INFO: recon-all complete : Not running 190801-15:19:05,578 nipype.workflow INFO: [Node] Finished "_autorecon30". 190801-15:19:05,580 nipype.workflow INFO: [Node] Setting-up "_autorecon31" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3/mapflow/_autorecon31". 190801-15:19:05,589 nipype.interface INFO: recon-all complete : Not running 190801-15:19:05,590 nipype.workflow INFO: [Node] Running "_autorecon31" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 190801-15:19:05,592 nipype.interface INFO: recon-all complete : Not running 190801-15:19:05,666 nipype.workflow INFO: [Node] Finished "_autorecon31". 190801-15:19:05,670 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3". 190801-15:19:07,390 nipype.workflow INFO: [Job 136] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3). 190801-15:19:07,391 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-15:19:07,467 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.targets" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/targets". 190801-15:19:07,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/fs_datasource". 190801-15:19:07,472 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/fs_datasource". 190801-15:19:07,473 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/get_surfaces". 190801-15:19:07,473 nipype.workflow INFO: [Node] Setting-up "_targets0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/targets/mapflow/_targets0". 190801-15:19:07,475 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/recon_report". 190801-15:19:07,477 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190801-15:19:07,479 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 190801-15:19:07,480 nipype.workflow INFO: [Node] Running "_targets0" ("nipype.interfaces.utility.wrappers.Function") 190801-15:19:07,480 nipype.workflow INFO: [Node] Running "get_surfaces" ("nipype.interfaces.io.FreeSurferSource") 190801-15:19:07,483 nipype.interface INFO: recon-all complete : Not running 190801-15:19:07,484 nipype.workflow INFO: [Node] Running "recon_report" ("niworkflows.interfaces.segmentation.ReconAllRPT"), a CommandLine Interface with command: echo recon-all: nothing to do 190801-15:19:07,485 nipype.interface INFO: recon-all complete : Not running 190801-15:19:07,485 nipype.workflow INFO: [Node] Finished "_targets0". 190801-15:19:07,488 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.targets". 190801-15:19:07,497 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource". 190801-15:19:07,497 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource". 190801-15:19:07,498 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces". 190801-15:19:07,538 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg". 190801-15:19:07,548 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-001 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer 190801-15:19:09,393 nipype.workflow INFO: [Job 137] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.targets). 190801-15:19:09,394 nipype.workflow INFO: [Job 150] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource). 190801-15:19:09,395 nipype.workflow INFO: [Job 154] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource). 190801-15:19:09,395 nipype.workflow INFO: [Job 400] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces). 190801-15:19:09,397 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 158.76/168.76, Free processors: 15/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190801-15:19:09,490 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative". 190801-15:19:09,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative". 190801-15:19:09,497 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/aseg.mgz --seg /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg.mgz --temp /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/rawavg.mgz --o /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz 190801-15:19:09,505 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/aseg.mgz --seg /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg.mgz --temp /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/rawavg.mgz --o /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz 190801-15:19:11,400 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 158.36/168.76, Free processors: 13/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190801-15:19:11,543 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190801-15:19:11,544 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190801-15:19:11,552 nipype.workflow INFO: [Node] Running "_midthickness1" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.pial -thickness -thickness_name /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.thickness /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/lh.smoothwm 0.5 midthickness 190801-15:19:11,552 nipype.workflow INFO: [Node] Running "_midthickness0" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.pial -thickness -thickness_name /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.thickness /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/rh.smoothwm 0.5 midthickness 190801-15:19:13,403 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 0 jobs ready. Free memory (GB): 157.96/168.76, Free processors: 11/24. Currently running: * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190801-15:19:14,234 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report". 190801-15:19:15,405 nipype.workflow INFO: [Job 408] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.recon_report). 190801-15:19:15,407 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 162.96/168.76, Free processors: 12/24. Currently running: * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190801-15:19:15,494 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_reports_wf/ds_recon_report". 190801-15:19:15,499 nipype.workflow INFO: [Node] Running "ds_recon_report" ("smriprep.interfaces.DerivativesDataSink") 190801-15:19:15,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report". 190801-15:19:15,506 nipype.workflow INFO: [Job 409] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report). 190801-15:19:15,730 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative". 190801-15:19:15,839 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative". 190801-15:19:17,405 nipype.workflow INFO: [Job 151] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative). 190801-15:19:17,406 nipype.workflow INFO: [Job 155] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative). 190801-15:19:17,408 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.36/168.76, Free processors: 14/24. Currently running: * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190801-15:19:17,492 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii". 190801-15:19:17,495 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii". 190801-15:19:17,499 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --input_volume /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz --output_volume /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz 190801-15:19:17,502 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --input_volume /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz --output_volume /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz 190801-15:19:18,458 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii". 190801-15:19:18,488 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii". 190801-15:19:19,409 nipype.workflow INFO: [Job 152] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii). 190801-15:19:19,410 nipype.workflow INFO: [Job 156] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii). 190801-15:19:19,412 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 163.36/168.76, Free processors: 14/24. Currently running: * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190801-15:19:19,496 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsparc" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_fsparc". 190801-15:19:19,501 nipype.workflow INFO: [Node] Running "ds_t1_fsparc" ("smriprep.interfaces.DerivativesDataSink") 190801-15:19:21,84 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsparc". 190801-15:19:21,84 nipype.workflow INFO: [Job 153] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsparc). 190801-15:19:21,164 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsaseg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_fsaseg". 190801-15:19:21,169 nipype.workflow INFO: [Node] Running "ds_t1_fsaseg" ("smriprep.interfaces.DerivativesDataSink") 190801-15:19:22,866 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsaseg". 190801-15:19:22,866 nipype.workflow INFO: [Job 157] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_fsaseg). 190801-15:19:22,960 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 163.16/168.76, Free processors: 13/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine * _midthickness1 * _midthickness0 * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg 190801-15:19:23,17 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine". 190801-15:19:23,23 nipype.workflow INFO: [Node] Running "refine" ("niworkflows.interfaces.freesurfer.RefineBrainMask") 190801-15:19:29,809 nipype.interface INFO: stdout 2019-08-01T15:19:29.808996: 190801-15:19:29,809 nipype.interface INFO: stdout 2019-08-01T15:19:29.808996:Matrix from LTA: 190801-15:19:29,809 nipype.interface INFO: stdout 2019-08-01T15:19:29.808996: 0.99884 0.03316 0.03503 0.65063; 190801-15:19:29,809 nipype.interface INFO: stdout 2019-08-01T15:19:29.808996:-0.01474 -0.48173 0.87620 -27.94801; 190801-15:19:29,809 nipype.interface INFO: stdout 2019-08-01T15:19:29.808996: 0.04594 -0.87569 -0.48068 -22.06812; 190801-15:19:29,809 nipype.interface INFO: stdout 2019-08-01T15:19:29.808996: 0.00000 0.00000 0.00000 1.00000; 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/brainmask.mgz 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:movvol /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:targvol /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/brainmask.mgz 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:outvol /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:regfile /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:invert 0 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:tal 0 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:talres 2 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:regheader 0 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:noresample 0 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:interp nearest (0) 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:precision float (3) 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:Gdiag_no -1 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:Synth 0 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:SynthSeed 1565534663 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:Final tkRAS-to-tkRAS Matrix is: 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 0.99884 0.03316 0.03503 0.65063; 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:-0.01474 -0.48173 0.87620 -27.94798; 190801-15:19:29,916 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 0.04594 -0.87569 -0.48068 -22.06812; 190801-15:19:29,917 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 0.00000 0.00000 0.00000 1.00000; 190801-15:19:29,917 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 190801-15:19:29,917 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 190801-15:19:29,917 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329:Vox2Vox Matrix is: 190801-15:19:29,917 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 0.33295 0.01168 -0.01105 -10.91354; 190801-15:19:29,917 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 0.01531 -0.16023 0.29190 20.54204; 190801-15:19:29,917 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 0.00393 -0.23365 -0.12846 54.39468; 190801-15:19:29,917 nipype.interface INFO: stdout 2019-08-01T15:19:29.916329: 0.00000 0.00000 0.00000 1.00000; 190801-15:19:30,489 nipype.interface INFO: stdout 2019-08-01T15:19:30.489753: 190801-15:19:30,489 nipype.interface INFO: stdout 2019-08-01T15:19:30.489753:Resampling 190801-15:19:30,489 nipype.interface INFO: stdout 2019-08-01T15:19:30.489753:Output registration matrix is identity 190801-15:19:30,490 nipype.interface INFO: stdout 2019-08-01T15:19:30.489753: 190801-15:19:30,490 nipype.interface INFO: stdout 2019-08-01T15:19:30.489753:mri_vol2vol done 190801-15:19:44,385 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg". 190801-15:19:45,4 nipype.workflow INFO: [Job 138] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.mri_coreg). 190801-15:19:45,6 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 168.16/168.76, Free processors: 21/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine * _midthickness1 * _midthickness0 190801-15:19:45,139 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister". 190801-15:19:45,146 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.lta --reg /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.dat --o /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-001 190801-15:19:47,9 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 156.16/168.76, Free processors: 20/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine * _midthickness1 * _midthickness0 190801-15:19:53,118 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine". 190801-15:19:55,21 nipype.workflow INFO: [Job 158] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.refine). 190801-15:19:55,23 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 5 jobs ready. Free memory (GB): 156.36/168.76, Free processors: 21/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190801-15:19:55,107 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration". 190801-15:19:55,110 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration". 190801-15:19:55,111 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_mask". 190801-15:19:55,113 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190801-15:19:55,116 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190801-15:19:55,116 nipype.workflow INFO: [Node] Running "ds_t1_mask" ("smriprep.interfaces.DerivativesDataSink") 190801-15:19:55,473 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask". 190801-15:19:55,473 nipype.workflow INFO: [Job 189] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask). 190801-15:19:55,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.applyrefined" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/applyrefined". 190801-15:19:55,566 nipype.workflow INFO: [Node] Running "applyrefined" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine/sub-001_T1w_corrected_xform_rbrainmask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/applyrefined/sub-001_T1w_corrected_xform_masked.nii.gz 190801-15:19:56,811 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.applyrefined". 190801-15:19:57,25 nipype.workflow INFO: [Job 190] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.applyrefined). 190801-15:19:57,27 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 152.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190801-15:19:57,113 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/gen_ref". 190801-15:19:57,115 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg". 190801-15:19:57,119 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190801-15:19:57,122 nipype.workflow INFO: [Node] Running "t1_seg" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command: fast -N -p -g -S 1 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked.nii.gz 190801-15:19:57,665 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.gen_ref". 190801-15:19:59,26 nipype.workflow INFO: [Job 191] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.gen_ref). 190801-15:19:59,29 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 149.36/168.76, Free processors: 4/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190801-15:19:59,122 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/aparc_t1w_tfm". 190801-15:19:59,125 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/aseg_t1w_tfm". 190801-15:19:59,128 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-001_T1w_corrected_xform_masked_reference.nii.gz -t identity 190801-15:19:59,134 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-001_T1w_corrected_xform_masked_reference.nii.gz -t identity 190801-15:20:00,672 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm". 190801-15:20:00,686 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm". 190801-15:20:01,29 nipype.workflow INFO: [Job 192] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aparc_t1w_tfm). 190801-15:20:01,30 nipype.workflow INFO: [Job 194] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.aseg_t1w_tfm). 190801-15:20:01,32 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 149.36/168.76, Free processors: 4/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190801-15:20:01,125 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_t1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_aparc_t1". 190801-15:20:01,129 nipype.workflow INFO: [Node] Running "ds_bold_aparc_t1" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:20:01,188 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_t1". 190801-15:20:01,188 nipype.workflow INFO: [Job 193] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_t1). 190801-15:20:01,282 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_t1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_aseg_t1". 190801-15:20:01,289 nipype.workflow INFO: [Node] Running "ds_bold_aseg_t1" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:20:01,363 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_t1". 190801-15:20:01,363 nipype.workflow INFO: [Job 195] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_t1). 190801-15:20:03,32 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 1 jobs ready. Free memory (GB): 149.36/168.76, Free processors: 4/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister * _midthickness1 * _midthickness0 190801-15:20:21,494 nipype.interface INFO: stdout 2019-08-01T15:20:21.494569: 190801-15:20:21,494 nipype.interface INFO: stdout 2019-08-01T15:20:21.494569:Matrix from LTA: 190801-15:20:21,495 nipype.interface INFO: stdout 2019-08-01T15:20:21.494569: 0.99861 0.03346 0.04064 0.58821; 190801-15:20:21,495 nipype.interface INFO: stdout 2019-08-01T15:20:21.494569:-0.01857 -0.49846 0.86671 -29.28613; 190801-15:20:21,495 nipype.interface INFO: stdout 2019-08-01T15:20:21.494569: 0.04926 -0.86626 -0.49715 -20.46210; 190801-15:20:21,495 nipype.interface INFO: stdout 2019-08-01T15:20:21.494569: 0.00000 0.00000 0.00000 1.00000; 190801-15:20:21,610 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/brainmask.mgz 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:movvol /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:targvol /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/mri/brainmask.mgz 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:outvol /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:regfile /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.lta 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:invert 0 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:tal 0 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:talres 2 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:regheader 0 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:noresample 0 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:interp nearest (0) 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:precision float (3) 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:Gdiag_no -1 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:Synth 0 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:SynthSeed 1565223535 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:Final tkRAS-to-tkRAS Matrix is: 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 0.99861 0.03346 0.04064 0.58821; 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:-0.01857 -0.49846 0.86671 -29.28610; 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 0.04926 -0.86626 -0.49715 -20.46208; 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 0.00000 0.00000 0.00000 1.00000; 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749:Vox2Vox Matrix is: 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 0.33287 0.01355 -0.01115 -11.10963; 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 0.01642 -0.16572 0.28875 20.97019; 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 0.00495 -0.23112 -0.13292 54.15463; 190801-15:20:21,611 nipype.interface INFO: stdout 2019-08-01T15:20:21.610749: 0.00000 0.00000 0.00000 1.00000; 190801-15:20:22,255 nipype.interface INFO: stdout 2019-08-01T15:20:22.255775: 190801-15:20:22,256 nipype.interface INFO: stdout 2019-08-01T15:20:22.255775:Resampling 190801-15:20:22,256 nipype.interface INFO: stdout 2019-08-01T15:20:22.255775:Output registration matrix is identity 190801-15:20:22,256 nipype.interface INFO: stdout 2019-08-01T15:20:22.255775: 190801-15:20:22,256 nipype.interface INFO: stdout 2019-08-01T15:20:22.255775:mri_vol2vol done 190801-15:20:37,494 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister". 190801-15:20:39,62 nipype.workflow INFO: [Job 139] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.bbregister). 190801-15:20:39,65 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:39,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.reports" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/reports". 190801-15:20:39,163 nipype.workflow INFO: [Node] Running "reports" ("nipype.interfaces.utility.base.Merge") 190801-15:20:39,168 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.reports". 190801-15:20:39,168 nipype.workflow INFO: [Job 140] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.reports). 190801-15:20:39,262 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.transforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/transforms". 190801-15:20:39,267 nipype.workflow INFO: [Node] Running "transforms" ("nipype.interfaces.utility.base.Merge") 190801-15:20:39,271 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.transforms". 190801-15:20:39,271 nipype.workflow INFO: [Job 141] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.transforms). 190801-15:20:41,65 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:43,67 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:43,160 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190801-15:20:43,166 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 190801-15:20:43,226 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190801-15:20:43,232 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.lta --outlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 190801-15:20:43,285 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 190801-15:20:43,351 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 190801-15:20:45,68 nipype.workflow INFO: [Job 418] Completed (_lta_ras2ras0). 190801-15:20:45,68 nipype.workflow INFO: [Job 419] Completed (_lta_ras2ras1). 190801-15:20:45,70 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:45,166 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 190801-15:20:45,171 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 190801-15:20:45,172 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 190801-15:20:45,172 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 190801-15:20:45,172 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 190801-15:20:45,173 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 190801-15:20:45,173 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 190801-15:20:45,176 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 190801-15:20:47,69 nipype.workflow INFO: [Job 142] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_ras2ras). 190801-15:20:47,72 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:47,165 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/compare_transforms". 190801-15:20:47,170 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 190801-15:20:47,182 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms". 190801-15:20:49,70 nipype.workflow INFO: [Job 143] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.compare_transforms). 190801-15:20:49,73 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:49,166 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/select_report". 190801-15:20:49,170 nipype.workflow INFO: [Node] Running "select_report" ("nipype.interfaces.utility.base.Select") 190801-15:20:49,175 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_report". 190801-15:20:49,175 nipype.workflow INFO: [Job 144] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_report). 190801-15:20:49,269 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/select_transform". 190801-15:20:49,273 nipype.workflow INFO: [Node] Running "select_transform" ("nipype.interfaces.utility.base.Select") 190801-15:20:49,278 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_transform". 190801-15:20:49,278 nipype.workflow INFO: [Job 146] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.select_transform). 190801-15:20:51,74 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:51,169 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.ds_report_reg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/ds_report_reg". 190801-15:20:51,174 nipype.workflow INFO: [Node] Running "ds_report_reg" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:20:51,180 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.ds_report_reg". 190801-15:20:51,180 nipype.workflow INFO: [Job 145] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.ds_report_reg). 190801-15:20:51,277 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat". 190801-15:20:51,290 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-001.lta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/fsnative_2_t1_xfm/T1_robustreg.lta out.lta 190801-15:20:51,409 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat". 190801-15:20:53,75 nipype.workflow INFO: [Job 147] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta_concat). 190801-15:20:53,77 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:53,226 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 190801-15:20:53,232 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 190801-15:20:53,237 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 190801-15:20:53,243 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 190801-15:20:53,318 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 190801-15:20:53,370 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 190801-15:20:55,76 nipype.workflow INFO: [Job 148] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv). 190801-15:20:55,77 nipype.workflow INFO: [Job 149] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd). 190801-15:20:55,79 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:55,173 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 190801-15:20:55,176 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 190801-15:20:55,178 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/applyrefined/sub-001_T1w_corrected_xform_masked.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190801-15:20:55,181 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/applyrefined/sub-001_T1w_corrected_xform_masked.nii.gz -src /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190801-15:20:55,528 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 190801-15:20:55,552 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 190801-15:20:57,78 nipype.workflow INFO: [Job 196] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv). 190801-15:20:57,79 nipype.workflow INFO: [Job 197] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd). 190801-15:20:57,81 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:57,175 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/merge_xforms". 190801-15:20:57,179 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190801-15:20:57,184 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge_xforms". 190801-15:20:57,184 nipype.workflow INFO: [Job 198] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge_xforms). 190801-15:20:57,280 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm". 190801-15:20:57,285 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/gen_ref/sub-001_T1w_corrected_xform_masked_reference.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190801-15:20:58,372 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm". 190801-15:20:59,79 nipype.workflow INFO: [Job 214] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.mask_t1w_tfm). 190801-15:20:59,82 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:20:59,178 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.boldmask_to_t1w" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/boldmask_to_t1w". 190801-15:20:59,178 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 190801-15:20:59,184 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190801-15:20:59,185 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190801-15:20:59,348 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190801-15:21:00,200 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.boldmask_to_t1w". 190801-15:21:01,80 nipype.workflow INFO: [Job 215] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.boldmask_to_t1w). 190801-15:21:01,81 nipype.workflow INFO: [Job 217] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190801-15:21:01,83 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:01,178 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_t1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_mask_t1". 190801-15:21:01,183 nipype.workflow INFO: [Node] Running "ds_bold_mask_t1" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:21:01,213 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_t1". 190801-15:21:01,213 nipype.workflow INFO: [Job 216] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_t1). 190801-15:21:03,83 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 161.36/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:42,375 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg". 190801-15:21:43,118 nipype.workflow INFO: [Job 230] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.t1_seg). 190801-15:21:43,120 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 8 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:43,216 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_tpms". 190801-15:21:43,220 nipype.workflow INFO: [Node] Running "ds_t1_tpms" ("smriprep.interfaces.DerivativesDataSink") 190801-15:21:46,962 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms". 190801-15:21:46,963 nipype.workflow INFO: [Job 357] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms). 190801-15:21:47,83 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/lut_t1_seg". 190801-15:21:47,85 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/wm_roi". 190801-15:21:47,86 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_roi" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_roi". 190801-15:21:47,88 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tpms_add_csf_wm". 190801-15:21:47,88 nipype.workflow INFO: [Node] Running "lut_t1_seg" ("nipype.interfaces.utility.wrappers.Function") 190801-15:21:47,91 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190801-15:21:47,92 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/seg_rpt". 190801-15:21:47,92 nipype.workflow INFO: [MultiProc] Running 9 tasks, and 2 jobs ready. Free memory (GB): 163.36/168.76, Free processors: 1/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_roi * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:47,93 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 190801-15:21:47,97 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190801-15:21:47,97 nipype.workflow INFO: [Node] Running "seg_rpt" ("niworkflows.interfaces.masks.ROIsPlot") 190801-15:21:47,470 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg". 190801-15:21:47,740 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_roi". 190801-15:21:48,206 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm". 190801-15:21:49,93 nipype.workflow INFO: [Job 358] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg). 190801-15:21:49,94 nipype.workflow INFO: [Job 363] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_roi). 190801-15:21:49,95 nipype.workflow INFO: [Job 372] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tpms_add_csf_wm). 190801-15:21:49,97 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 163.96/168.76, Free processors: 4/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:49,191 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_seg". 190801-15:21:49,196 nipype.workflow INFO: [Node] Running "ds_t1_seg" ("smriprep.interfaces.DerivativesDataSink") 190801-15:21:50,481 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi". 190801-15:21:50,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg". 190801-15:21:50,893 nipype.workflow INFO: [Job 359] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg). 190801-15:21:50,985 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tcc_tfm". 190801-15:21:50,987 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_tfm". 190801-15:21:50,988 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_roi". 190801-15:21:50,992 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_roi/sub-001_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-001_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190801-15:21:50,993 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 190801-15:21:50,994 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_roi/sub-001_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-001_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190801-15:21:51,94 nipype.workflow INFO: [Job 360] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_roi). 190801-15:21:51,96 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 163.76/168.76, Free processors: 2/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_tfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:51,189 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_tfm". 190801-15:21:51,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_tfm". 190801-15:21:51,194 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/wm_tfm". 190801-15:21:51,199 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/wm_roi/sub-001_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-001_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190801-15:21:51,417 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_tfm". 190801-15:21:53,96 nipype.workflow INFO: [Job 364] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_tfm). 190801-15:21:53,97 nipype.workflow INFO: [Job 368] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_tfm). 190801-15:21:53,98 nipype.workflow INFO: [Job 361] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_tfm). 190801-15:21:53,100 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 5 jobs ready. Free memory (GB): 163.96/168.76, Free processors: 4/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:53,194 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/wm_msk". 190801-15:21:53,195 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tcc_msk". 190801-15:21:53,197 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/csf_msk". 190801-15:21:53,199 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 190801-15:21:53,201 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 190801-15:21:53,202 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 190801-15:21:53,225 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_msk". 190801-15:21:53,231 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_msk". 190801-15:21:53,231 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_msk". 190801-15:21:54,260 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi". 190801-15:21:55,98 nipype.workflow INFO: [Job 373] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_roi). 190801-15:21:55,99 nipype.workflow INFO: [Job 362] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.wm_msk). 190801-15:21:55,100 nipype.workflow INFO: [Job 365] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_msk). 190801-15:21:55,100 nipype.workflow INFO: [Job 369] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.csf_msk). 190801-15:21:55,102 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:55,198 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcompcor" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tcompcor". 190801-15:21:55,198 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_rois". 190801-15:21:55,203 nipype.workflow INFO: [Node] Running "merge_rois" ("nipype.interfaces.utility.base.Merge") 190801-15:21:55,203 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 190801-15:21:55,208 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois". 190801-15:21:55,208 nipype.workflow INFO: [Job 370] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois). 190801-15:21:55,299 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_tfm". 190801-15:21:55,305 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_roi/sub-001_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-001_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 190801-15:21:55,510 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_tfm". 190801-15:21:55,920 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcompcor". 190801-15:21:57,99 nipype.workflow INFO: [Job 366] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcompcor). 190801-15:21:57,100 nipype.workflow INFO: [Job 374] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_tfm). 190801-15:21:57,102 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:57,195 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/tcc_metadata_fmt". 190801-15:21:57,198 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_msk". 190801-15:21:57,199 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190801-15:21:57,200 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.signals" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/signals". 190801-15:21:57,203 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 190801-15:21:57,205 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 190801-15:21:57,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_msk". 190801-15:21:57,254 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt". 190801-15:21:58,7 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.signals". 190801-15:21:59,101 nipype.workflow INFO: [Job 367] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.tcc_metadata_fmt). 190801-15:21:59,103 nipype.workflow INFO: [Job 371] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.signals). 190801-15:21:59,103 nipype.workflow INFO: [Job 375] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_msk). 190801-15:21:59,105 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:21:59,199 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_compcor". 190801-15:21:59,203 nipype.workflow INFO: [Node] Running "merge_compcor" ("nipype.interfaces.utility.base.Merge") 190801-15:21:59,208 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor". 190801-15:21:59,208 nipype.workflow INFO: [Job 376] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor). 190801-15:21:59,301 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois_cc" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_rois_cc". 190801-15:21:59,305 nipype.workflow INFO: [Node] Running "merge_rois_cc" ("nipype.interfaces.utility.base.Merge") 190801-15:21:59,310 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois_cc". 190801-15:21:59,310 nipype.workflow INFO: [Job 379] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_rois_cc). 190801-15:22:01,104 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:22:01,198 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/rois_plot". 190801-15:22:01,200 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acompcor" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acompcor". 190801-15:22:01,203 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 190801-15:22:01,205 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 190801-15:22:02,228 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acompcor". 190801-15:22:03,104 nipype.workflow INFO: [Job 380] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acompcor). 190801-15:22:03,107 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 5 jobs ready. Free memory (GB): 163.95/168.76, Free processors: 4/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:22:03,202 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor_metadata" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_compcor_metadata". 190801-15:22:03,206 nipype.workflow INFO: [Node] Running "merge_compcor_metadata" ("nipype.interfaces.utility.base.Merge") 190801-15:22:03,211 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor_metadata". 190801-15:22:03,211 nipype.workflow INFO: [Job 381] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_compcor_metadata). 190801-15:22:03,306 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_metadata_fmt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/acc_metadata_fmt". 190801-15:22:03,310 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.concat" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/concat". 190801-15:22:03,311 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 190801-15:22:03,314 nipype.workflow INFO: [Node] Running "concat" ("fmriprep.interfaces.confounds.GatherConfounds") 190801-15:22:03,446 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_metadata_fmt". 190801-15:22:04,182 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.concat". 190801-15:22:04,182 nipype.workflow INFO: [Job 387] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.concat). 190801-15:22:05,105 nipype.workflow INFO: [Job 384] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.acc_metadata_fmt). 190801-15:22:05,108 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 163.95/168.76, Free processors: 4/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:22:05,206 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.compcor_plot" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/compcor_plot". 190801-15:22:05,210 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 190801-15:22:05,271 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_confound_metadata". 190801-15:22:05,451 nipype.workflow INFO: [Node] Running "merge_confound_metadata" ("nipype.interfaces.utility.base.Merge") 190801-15:22:05,538 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.compcor_plot". 190801-15:22:05,641 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata". 190801-15:22:05,641 nipype.workflow INFO: [Job 385] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata). 190801-15:22:05,742 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.conf_corr_plot" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/conf_corr_plot". 190801-15:22:05,743 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.model_expansion" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/model_expansion". 190801-15:22:05,746 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 190801-15:22:05,747 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 190801-15:22:06,31 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot". 190801-15:22:06,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.model_expansion". 190801-15:22:07,107 nipype.workflow INFO: [Job 377] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.rois_plot). 190801-15:22:07,108 nipype.workflow INFO: [Job 382] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.compcor_plot). 190801-15:22:07,109 nipype.workflow INFO: [Job 390] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.model_expansion). 190801-15:22:07,111 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 163.96/168.76, Free processors: 4/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.conf_corr_plot * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:22:07,209 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_bold_rois" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/ds_report_bold_rois". 190801-15:22:07,214 nipype.workflow INFO: [Node] Running "ds_report_bold_rois" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:22:07,220 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_bold_rois". 190801-15:22:07,220 nipype.workflow INFO: [Job 378] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_bold_rois). 190801-15:22:07,318 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_compcor" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/ds_report_compcor". 190801-15:22:07,323 nipype.workflow INFO: [Node] Running "ds_report_compcor" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:22:07,329 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_compcor". 190801-15:22:07,329 nipype.workflow INFO: [Job 383] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_compcor). 190801-15:22:07,498 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/merge_confound_metadata2". 190801-15:22:07,681 nipype.workflow INFO: [Node] Running "merge_confound_metadata2" ("niworkflows.interfaces.utils.DictMerge") 190801-15:22:07,857 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata2". 190801-15:22:07,857 nipype.workflow INFO: [Job 386] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.merge_confound_metadata2). 190801-15:22:07,955 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.spike_regressors" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/spike_regressors". 190801-15:22:07,960 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 190801-15:22:08,462 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.spike_regressors". 190801-15:22:08,941 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.conf_corr_plot". 190801-15:22:09,107 nipype.workflow INFO: [Job 388] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.conf_corr_plot). 190801-15:22:09,108 nipype.workflow INFO: [Job 391] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.spike_regressors). 190801-15:22:09,110 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:22:09,202 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_conf_corr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_confounds_wf/ds_report_conf_corr". 190801-15:22:09,206 nipype.workflow INFO: [Node] Running "ds_report_conf_corr" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:22:09,212 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_conf_corr". 190801-15:22:09,212 nipype.workflow INFO: [Job 389] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_confounds_wf.ds_report_conf_corr). 190801-15:22:11,111 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:22:42,603 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt". 190801-15:22:43,146 nipype.workflow INFO: [Job 398] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.seg_rpt). 190801-15:22:43,148 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 3 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:22:43,248 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_reports_wf/ds_t1_seg_mask_report". 190801-15:22:43,253 nipype.workflow INFO: [Node] Running "ds_t1_seg_mask_report" ("smriprep.interfaces.DerivativesDataSink") 190801-15:22:43,259 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report". 190801-15:22:43,259 nipype.workflow INFO: [Job 399] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report). 190801-15:22:45,149 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 * _midthickness0 190801-15:30:39,501 nipype.workflow INFO: [Node] Finished "_midthickness0". 190801-15:30:39,635 nipype.workflow INFO: [Job 416] Completed (_midthickness0). 190801-15:30:39,636 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 164.56/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * _midthickness1 190801-15:30:59,815 nipype.workflow INFO: [Node] Finished "_midthickness1". 190801-15:31:01,668 nipype.workflow INFO: [Job 417] Completed (_midthickness1). 190801-15:31:01,670 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:31:01,758 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration". 190801-15:31:01,763 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 190801-15:31:03,672 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 162.76/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:13,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration". 190801-15:47:14,636 nipype.workflow INFO: [Job 169] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration). 190801-15:47:14,639 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:14,723 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_t1_tpl_inv_warp". 190801-15:47:14,728 nipype.workflow INFO: [Node] Running "ds_t1_tpl_inv_warp" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:14,735 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp". 190801-15:47:14,735 nipype.workflow INFO: [Job 170] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp). 190801-15:47:14,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_t1_tpl_warp". 190801-15:47:14,816 nipype.workflow INFO: [Node] Running "ds_t1_tpl_warp" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:14,822 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp". 190801-15:47:14,822 nipype.workflow INFO: [Job 171] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp). 190801-15:47:14,900 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_mask". 190801-15:47:14,903 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_moving". 190801-15:47:14,907 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine/sub-001_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190801-15:47:14,910 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-001_T1w_corrected_xform_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190801-15:47:14,915 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_seg". 190801-15:47:14,918 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness". 190801-15:47:14,921 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190801-15:47:14,924 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 190801-15:47:14,925 nipype.workflow INFO: [Node] Cached "_midthickness0" - collecting precomputed outputs 190801-15:47:14,925 nipype.workflow INFO: [Node] "_midthickness0" found cached. 190801-15:47:14,926 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 190801-15:47:14,927 nipype.workflow INFO: [Node] Cached "_midthickness1" - collecting precomputed outputs 190801-15:47:14,927 nipype.workflow INFO: [Node] "_midthickness1" found cached. 190801-15:47:14,930 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness". 190801-15:47:16,637 nipype.workflow INFO: [Job 401] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness). 190801-15:47:16,640 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:16,730 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/save_midthickness". 190801-15:47:16,732 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms0". 190801-15:47:16,733 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms1". 190801-15:47:16,734 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms2". 190801-15:47:16,737 nipype.workflow INFO: [Node] Running "save_midthickness" ("nipype.interfaces.io.DataSink") 190801-15:47:16,740 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190801-15:47:16,743 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190801-15:47:16,744 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190801-15:47:16,750 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness". 190801-15:47:18,639 nipype.workflow INFO: [Job 402] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness). 190801-15:47:18,642 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 2 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:18,728 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.surface_list" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/surface_list". 190801-15:47:18,733 nipype.workflow INFO: [Node] Running "surface_list" ("nipype.interfaces.utility.base.Merge") 190801-15:47:18,738 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.surface_list". 190801-15:47:18,738 nipype.workflow INFO: [Job 403] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.surface_list). 190801-15:47:20,642 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 2 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:22,644 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 9 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:22,730 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190801-15:47:22,731 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190801-15:47:22,737 nipype.workflow INFO: [Node] Running "_fs_2_gii0" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/surf/rh.smoothwm /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0/rh.smoothwm_converted.gii 190801-15:47:22,737 nipype.workflow INFO: [Node] Running "_fs_2_gii1" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/surf/lh.smoothwm /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1/lh.smoothwm_converted.gii 190801-15:47:24,163 nipype.workflow INFO: [Node] Finished "_fs_2_gii1". 190801-15:47:24,177 nipype.workflow INFO: [Node] Finished "_fs_2_gii0". 190801-15:47:24,644 nipype.workflow INFO: [Job 423] Completed (_fs_2_gii0). 190801-15:47:24,645 nipype.workflow INFO: [Job 424] Completed (_fs_2_gii1). 190801-15:47:24,646 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 7 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:24,732 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190801-15:47:24,733 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190801-15:47:24,739 nipype.workflow INFO: [Node] Running "_fs_2_gii2" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/surf/rh.pial /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2/rh.pial_converted.gii 190801-15:47:24,739 nipype.workflow INFO: [Node] Running "_fs_2_gii3" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/surf/lh.pial /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3/lh.pial_converted.gii 190801-15:47:26,153 nipype.workflow INFO: [Node] Finished "_fs_2_gii2". 190801-15:47:26,227 nipype.workflow INFO: [Node] Finished "_fs_2_gii3". 190801-15:47:26,646 nipype.workflow INFO: [Job 425] Completed (_fs_2_gii2). 190801-15:47:26,647 nipype.workflow INFO: [Job 426] Completed (_fs_2_gii3). 190801-15:47:26,648 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 5 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:26,732 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190801-15:47:26,734 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190801-15:47:26,738 nipype.workflow INFO: [Node] Running "_fs_2_gii4" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/surf/rh.inflated /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4/rh.inflated_converted.gii 190801-15:47:26,739 nipype.workflow INFO: [Node] Running "_fs_2_gii5" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/surf/lh.inflated /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5/lh.inflated_converted.gii 190801-15:47:28,183 nipype.workflow INFO: [Node] Finished "_fs_2_gii4". 190801-15:47:28,224 nipype.workflow INFO: [Node] Finished "_fs_2_gii5". 190801-15:47:28,648 nipype.workflow INFO: [Job 427] Completed (_fs_2_gii4). 190801-15:47:28,649 nipype.workflow INFO: [Job 428] Completed (_fs_2_gii5). 190801-15:47:28,650 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:28,749 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190801-15:47:28,750 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190801-15:47:28,756 nipype.workflow INFO: [Node] Running "_fs_2_gii6" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/surf/rh.midthickness /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6/rh.midthickness_converted.gii 190801-15:47:28,761 nipype.workflow INFO: [Node] Running "_fs_2_gii7" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/freesurfer/sub-001/surf/lh.midthickness /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7/lh.midthickness_converted.gii 190801-15:47:30,167 nipype.workflow INFO: [Node] Finished "_fs_2_gii6". 190801-15:47:30,236 nipype.workflow INFO: [Node] Finished "_fs_2_gii7". 190801-15:47:30,649 nipype.workflow INFO: [Job 429] Completed (_fs_2_gii6). 190801-15:47:30,650 nipype.workflow INFO: [Job 430] Completed (_fs_2_gii7). 190801-15:47:30,651 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 2 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:30,739 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii". 190801-15:47:30,745 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii0". 190801-15:47:30,746 nipype.workflow INFO: [Node] Cached "_fs_2_gii0" - collecting precomputed outputs 190801-15:47:30,746 nipype.workflow INFO: [Node] "_fs_2_gii0" found cached. 190801-15:47:30,747 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii1". 190801-15:47:30,748 nipype.workflow INFO: [Node] Cached "_fs_2_gii1" - collecting precomputed outputs 190801-15:47:30,748 nipype.workflow INFO: [Node] "_fs_2_gii1" found cached. 190801-15:47:30,749 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii2". 190801-15:47:30,750 nipype.workflow INFO: [Node] Cached "_fs_2_gii2" - collecting precomputed outputs 190801-15:47:30,750 nipype.workflow INFO: [Node] "_fs_2_gii2" found cached. 190801-15:47:30,750 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii3". 190801-15:47:30,751 nipype.workflow INFO: [Node] Cached "_fs_2_gii3" - collecting precomputed outputs 190801-15:47:30,751 nipype.workflow INFO: [Node] "_fs_2_gii3" found cached. 190801-15:47:30,752 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii4". 190801-15:47:30,753 nipype.workflow INFO: [Node] Cached "_fs_2_gii4" - collecting precomputed outputs 190801-15:47:30,753 nipype.workflow INFO: [Node] "_fs_2_gii4" found cached. 190801-15:47:30,754 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii5". 190801-15:47:30,755 nipype.workflow INFO: [Node] Cached "_fs_2_gii5" - collecting precomputed outputs 190801-15:47:30,755 nipype.workflow INFO: [Node] "_fs_2_gii5" found cached. 190801-15:47:30,755 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii6". 190801-15:47:30,756 nipype.workflow INFO: [Node] Cached "_fs_2_gii6" - collecting precomputed outputs 190801-15:47:30,756 nipype.workflow INFO: [Node] "_fs_2_gii6" found cached. 190801-15:47:30,757 nipype.workflow INFO: [Node] Setting-up "_fs_2_gii7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs_2_gii/mapflow/_fs_2_gii7". 190801-15:47:30,758 nipype.workflow INFO: [Node] Cached "_fs_2_gii7" - collecting precomputed outputs 190801-15:47:30,758 nipype.workflow INFO: [Node] "_fs_2_gii7" found cached. 190801-15:47:30,762 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii". 190801-15:47:32,652 nipype.workflow INFO: [Job 404] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs_2_gii). 190801-15:47:32,654 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 2 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:34,655 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 9 jobs ready. Free memory (GB): 163.56/168.76, Free processors: 2/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:34,747 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190801-15:47:34,748 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190801-15:47:34,752 nipype.workflow INFO: [Node] Running "_fix_surfs0" ("niworkflows.interfaces.surf.NormalizeSurf") 190801-15:47:34,753 nipype.workflow INFO: [Node] Running "_fix_surfs1" ("niworkflows.interfaces.surf.NormalizeSurf") 190801-15:47:35,105 nipype.workflow INFO: [Node] Finished "_fix_surfs1". 190801-15:47:35,167 nipype.workflow INFO: [Node] Finished "_fix_surfs0". 190801-15:47:36,59 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190801-15:47:36,181 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190801-15:47:36,215 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190801-15:47:36,655 nipype.workflow INFO: [Job 420] Completed (_tpl_tpms0). 190801-15:47:36,656 nipype.workflow INFO: [Job 421] Completed (_tpl_tpms1). 190801-15:47:36,656 nipype.workflow INFO: [Job 422] Completed (_tpl_tpms2). 190801-15:47:36,656 nipype.workflow INFO: [Job 431] Completed (_fix_surfs0). 190801-15:47:36,657 nipype.workflow INFO: [Job 432] Completed (_fix_surfs1). 190801-15:47:36,658 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 8 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:36,746 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms". 190801-15:47:36,748 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190801-15:47:36,749 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190801-15:47:36,750 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190801-15:47:36,750 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190801-15:47:36,753 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms0". 190801-15:47:36,753 nipype.workflow INFO: [Node] Running "_fix_surfs4" ("niworkflows.interfaces.surf.NormalizeSurf") 190801-15:47:36,755 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190801-15:47:36,755 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190801-15:47:36,755 nipype.workflow INFO: [Node] Running "_fix_surfs5" ("niworkflows.interfaces.surf.NormalizeSurf") 190801-15:47:36,755 nipype.workflow INFO: [Node] Running "_fix_surfs2" ("niworkflows.interfaces.surf.NormalizeSurf") 190801-15:47:36,755 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms1". 190801-15:47:36,756 nipype.workflow INFO: [Node] Running "_fix_surfs3" ("niworkflows.interfaces.surf.NormalizeSurf") 190801-15:47:36,757 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190801-15:47:36,757 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190801-15:47:36,757 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_tpms/mapflow/_tpl_tpms2". 190801-15:47:36,759 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190801-15:47:36,759 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190801-15:47:36,762 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190801-15:47:37,117 nipype.workflow INFO: [Node] Finished "_fix_surfs4". 190801-15:47:37,133 nipype.workflow INFO: [Node] Finished "_fix_surfs3". 190801-15:47:37,134 nipype.workflow INFO: [Node] Finished "_fix_surfs5". 190801-15:47:37,136 nipype.workflow INFO: [Node] Finished "_fix_surfs2". 190801-15:47:38,658 nipype.workflow INFO: [Job 236] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms). 190801-15:47:38,659 nipype.workflow INFO: [Job 433] Completed (_fix_surfs2). 190801-15:47:38,660 nipype.workflow INFO: [Job 434] Completed (_fix_surfs3). 190801-15:47:38,660 nipype.workflow INFO: [Job 435] Completed (_fix_surfs4). 190801-15:47:38,660 nipype.workflow INFO: [Job 436] Completed (_fix_surfs5). 190801-15:47:38,662 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:38,746 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_tpl_tpms". 190801-15:47:38,750 nipype.workflow INFO: [Node] Running "ds_tpl_tpms" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:41,43 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms". 190801-15:47:41,43 nipype.workflow INFO: [Job 237] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms). 190801-15:47:41,131 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190801-15:47:41,131 nipype.workflow INFO: [MultiProc] Running 7 tasks, and 1 jobs ready. Free memory (GB): 163.76/168.76, Free processors: 3/24. Currently running: * _fix_surfs7 * _fix_surfs6 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:41,133 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190801-15:47:41,136 nipype.workflow INFO: [Node] Running "_fix_surfs6" ("niworkflows.interfaces.surf.NormalizeSurf") 190801-15:47:41,138 nipype.workflow INFO: [Node] Running "_fix_surfs7" ("niworkflows.interfaces.surf.NormalizeSurf") 190801-15:47:41,482 nipype.workflow INFO: [Node] Finished "_fix_surfs6". 190801-15:47:41,504 nipype.workflow INFO: [Node] Finished "_fix_surfs7". 190801-15:47:43,132 nipype.workflow INFO: [Job 437] Completed (_fix_surfs6). 190801-15:47:43,132 nipype.workflow INFO: [Job 438] Completed (_fix_surfs7). 190801-15:47:43,134 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:43,223 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs". 190801-15:47:43,228 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 190801-15:47:43,229 nipype.workflow INFO: [Node] Cached "_fix_surfs0" - collecting precomputed outputs 190801-15:47:43,229 nipype.workflow INFO: [Node] "_fix_surfs0" found cached. 190801-15:47:43,230 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 190801-15:47:43,231 nipype.workflow INFO: [Node] Cached "_fix_surfs1" - collecting precomputed outputs 190801-15:47:43,231 nipype.workflow INFO: [Node] "_fix_surfs1" found cached. 190801-15:47:43,231 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 190801-15:47:43,232 nipype.workflow INFO: [Node] Cached "_fix_surfs2" - collecting precomputed outputs 190801-15:47:43,232 nipype.workflow INFO: [Node] "_fix_surfs2" found cached. 190801-15:47:43,233 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 190801-15:47:43,234 nipype.workflow INFO: [Node] Cached "_fix_surfs3" - collecting precomputed outputs 190801-15:47:43,234 nipype.workflow INFO: [Node] "_fix_surfs3" found cached. 190801-15:47:43,234 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 190801-15:47:43,235 nipype.workflow INFO: [Node] Cached "_fix_surfs4" - collecting precomputed outputs 190801-15:47:43,235 nipype.workflow INFO: [Node] "_fix_surfs4" found cached. 190801-15:47:43,236 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 190801-15:47:43,237 nipype.workflow INFO: [Node] Cached "_fix_surfs5" - collecting precomputed outputs 190801-15:47:43,237 nipype.workflow INFO: [Node] "_fix_surfs5" found cached. 190801-15:47:43,237 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 190801-15:47:43,238 nipype.workflow INFO: [Node] Cached "_fix_surfs6" - collecting precomputed outputs 190801-15:47:43,238 nipype.workflow INFO: [Node] "_fix_surfs6" found cached. 190801-15:47:43,239 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 190801-15:47:43,240 nipype.workflow INFO: [Node] Cached "_fix_surfs7" - collecting precomputed outputs 190801-15:47:43,240 nipype.workflow INFO: [Node] "_fix_surfs7" found cached. 190801-15:47:43,244 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs". 190801-15:47:45,134 nipype.workflow INFO: [Job 405] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs). 190801-15:47:45,136 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 164.16/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:46,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190801-15:47:47,135 nipype.workflow INFO: [Job 174] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving). 190801-15:47:47,138 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 10 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:47,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_t1_tpl". 190801-15:47:47,254 nipype.workflow INFO: [Node] Running "ds_t1_tpl" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:48,706 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl". 190801-15:47:48,706 nipype.workflow INFO: [Job 175] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl). 190801-15:47:48,835 nipype.workflow INFO: [Node] Setting-up "_name_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs0". 190801-15:47:48,840 nipype.workflow INFO: [Node] Running "_name_surfs0" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:47:48,844 nipype.workflow INFO: [Node] Finished "_name_surfs0". 190801-15:47:48,845 nipype.workflow INFO: [Job 439] Completed (_name_surfs0). 190801-15:47:48,925 nipype.workflow INFO: [Node] Setting-up "_name_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs1". 190801-15:47:48,929 nipype.workflow INFO: [Node] Running "_name_surfs1" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:47:48,934 nipype.workflow INFO: [Node] Finished "_name_surfs1". 190801-15:47:48,934 nipype.workflow INFO: [Job 440] Completed (_name_surfs1). 190801-15:47:49,18 nipype.workflow INFO: [Node] Setting-up "_name_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs2". 190801-15:47:49,23 nipype.workflow INFO: [Node] Running "_name_surfs2" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:47:49,28 nipype.workflow INFO: [Node] Finished "_name_surfs2". 190801-15:47:49,28 nipype.workflow INFO: [Job 441] Completed (_name_surfs2). 190801-15:47:49,112 nipype.workflow INFO: [Node] Setting-up "_name_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs3". 190801-15:47:49,117 nipype.workflow INFO: [Node] Running "_name_surfs3" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:47:49,121 nipype.workflow INFO: [Node] Finished "_name_surfs3". 190801-15:47:49,121 nipype.workflow INFO: [Job 442] Completed (_name_surfs3). 190801-15:47:49,201 nipype.workflow INFO: [Node] Setting-up "_name_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs4". 190801-15:47:49,206 nipype.workflow INFO: [Node] Running "_name_surfs4" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:47:49,210 nipype.workflow INFO: [Node] Finished "_name_surfs4". 190801-15:47:49,210 nipype.workflow INFO: [Job 443] Completed (_name_surfs4). 190801-15:47:49,287 nipype.workflow INFO: [Node] Setting-up "_name_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs5". 190801-15:47:49,291 nipype.workflow INFO: [Node] Running "_name_surfs5" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:47:49,295 nipype.workflow INFO: [Node] Finished "_name_surfs5". 190801-15:47:49,295 nipype.workflow INFO: [Job 444] Completed (_name_surfs5). 190801-15:47:49,372 nipype.workflow INFO: [Node] Setting-up "_name_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs6". 190801-15:47:49,377 nipype.workflow INFO: [Node] Running "_name_surfs6" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:47:49,381 nipype.workflow INFO: [Node] Finished "_name_surfs6". 190801-15:47:49,381 nipype.workflow INFO: [Job 445] Completed (_name_surfs6). 190801-15:47:49,458 nipype.workflow INFO: [Node] Setting-up "_name_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs7". 190801-15:47:49,462 nipype.workflow INFO: [Node] Running "_name_surfs7" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:47:49,466 nipype.workflow INFO: [Node] Finished "_name_surfs7". 190801-15:47:49,466 nipype.workflow INFO: [Job 446] Completed (_name_surfs7). 190801-15:47:49,545 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:49,622 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.name_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs". 190801-15:47:49,626 nipype.workflow INFO: [Node] Setting-up "_name_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs0". 190801-15:47:49,627 nipype.workflow INFO: [Node] Cached "_name_surfs0" - collecting precomputed outputs 190801-15:47:49,627 nipype.workflow INFO: [Node] "_name_surfs0" found cached. 190801-15:47:49,628 nipype.workflow INFO: [Node] Setting-up "_name_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs1". 190801-15:47:49,629 nipype.workflow INFO: [Node] Cached "_name_surfs1" - collecting precomputed outputs 190801-15:47:49,629 nipype.workflow INFO: [Node] "_name_surfs1" found cached. 190801-15:47:49,629 nipype.workflow INFO: [Node] Setting-up "_name_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs2". 190801-15:47:49,630 nipype.workflow INFO: [Node] Cached "_name_surfs2" - collecting precomputed outputs 190801-15:47:49,630 nipype.workflow INFO: [Node] "_name_surfs2" found cached. 190801-15:47:49,631 nipype.workflow INFO: [Node] Setting-up "_name_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs3". 190801-15:47:49,631 nipype.workflow INFO: [Node] Cached "_name_surfs3" - collecting precomputed outputs 190801-15:47:49,631 nipype.workflow INFO: [Node] "_name_surfs3" found cached. 190801-15:47:49,632 nipype.workflow INFO: [Node] Setting-up "_name_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs4". 190801-15:47:49,633 nipype.workflow INFO: [Node] Cached "_name_surfs4" - collecting precomputed outputs 190801-15:47:49,633 nipype.workflow INFO: [Node] "_name_surfs4" found cached. 190801-15:47:49,633 nipype.workflow INFO: [Node] Setting-up "_name_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs5". 190801-15:47:49,634 nipype.workflow INFO: [Node] Cached "_name_surfs5" - collecting precomputed outputs 190801-15:47:49,634 nipype.workflow INFO: [Node] "_name_surfs5" found cached. 190801-15:47:49,635 nipype.workflow INFO: [Node] Setting-up "_name_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs6". 190801-15:47:49,635 nipype.workflow INFO: [Node] Cached "_name_surfs6" - collecting precomputed outputs 190801-15:47:49,636 nipype.workflow INFO: [Node] "_name_surfs6" found cached. 190801-15:47:49,636 nipype.workflow INFO: [Node] Setting-up "_name_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/name_surfs/mapflow/_name_surfs7". 190801-15:47:49,637 nipype.workflow INFO: [Node] Cached "_name_surfs7" - collecting precomputed outputs 190801-15:47:49,637 nipype.workflow INFO: [Node] "_name_surfs7" found cached. 190801-15:47:49,640 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.name_surfs". 190801-15:47:49,640 nipype.workflow INFO: [Job 406] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.name_surfs). 190801-15:47:51,547 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:53,549 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 9 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:53,643 nipype.workflow INFO: [Node] Setting-up "_ds_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs0". 190801-15:47:53,648 nipype.workflow INFO: [Node] Running "_ds_surfs0" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:53,654 nipype.workflow INFO: [Node] Finished "_ds_surfs0". 190801-15:47:53,654 nipype.workflow INFO: [Job 447] Completed (_ds_surfs0). 190801-15:47:53,734 nipype.workflow INFO: [Node] Setting-up "_ds_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs1". 190801-15:47:53,739 nipype.workflow INFO: [Node] Running "_ds_surfs1" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:53,744 nipype.workflow INFO: [Node] Finished "_ds_surfs1". 190801-15:47:53,744 nipype.workflow INFO: [Job 448] Completed (_ds_surfs1). 190801-15:47:53,822 nipype.workflow INFO: [Node] Setting-up "_ds_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs2". 190801-15:47:53,826 nipype.workflow INFO: [Node] Running "_ds_surfs2" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:53,832 nipype.workflow INFO: [Node] Finished "_ds_surfs2". 190801-15:47:53,832 nipype.workflow INFO: [Job 449] Completed (_ds_surfs2). 190801-15:47:53,909 nipype.workflow INFO: [Node] Setting-up "_ds_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs3". 190801-15:47:53,913 nipype.workflow INFO: [Node] Running "_ds_surfs3" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:53,919 nipype.workflow INFO: [Node] Finished "_ds_surfs3". 190801-15:47:53,919 nipype.workflow INFO: [Job 450] Completed (_ds_surfs3). 190801-15:47:54,4 nipype.workflow INFO: [Node] Setting-up "_ds_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs4". 190801-15:47:54,9 nipype.workflow INFO: [Node] Running "_ds_surfs4" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:54,15 nipype.workflow INFO: [Node] Finished "_ds_surfs4". 190801-15:47:54,15 nipype.workflow INFO: [Job 451] Completed (_ds_surfs4). 190801-15:47:54,100 nipype.workflow INFO: [Node] Setting-up "_ds_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs5". 190801-15:47:54,105 nipype.workflow INFO: [Node] Running "_ds_surfs5" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:54,111 nipype.workflow INFO: [Node] Finished "_ds_surfs5". 190801-15:47:54,111 nipype.workflow INFO: [Job 452] Completed (_ds_surfs5). 190801-15:47:54,196 nipype.workflow INFO: [Node] Setting-up "_ds_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs6". 190801-15:47:54,201 nipype.workflow INFO: [Node] Running "_ds_surfs6" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:54,207 nipype.workflow INFO: [Node] Finished "_ds_surfs6". 190801-15:47:54,207 nipype.workflow INFO: [Job 453] Completed (_ds_surfs6). 190801-15:47:54,291 nipype.workflow INFO: [Node] Setting-up "_ds_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs7". 190801-15:47:54,296 nipype.workflow INFO: [Node] Running "_ds_surfs7" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:54,302 nipype.workflow INFO: [Node] Finished "_ds_surfs7". 190801-15:47:54,302 nipype.workflow INFO: [Job 454] Completed (_ds_surfs7). 190801-15:47:55,550 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:47:55,637 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs". 190801-15:47:55,642 nipype.workflow INFO: [Node] Setting-up "_ds_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs0". 190801-15:47:55,649 nipype.workflow INFO: [Node] Running "_ds_surfs0" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:55,655 nipype.workflow INFO: [Node] Finished "_ds_surfs0". 190801-15:47:55,655 nipype.workflow INFO: [Node] Setting-up "_ds_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs1". 190801-15:47:55,662 nipype.workflow INFO: [Node] Running "_ds_surfs1" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:55,668 nipype.workflow INFO: [Node] Finished "_ds_surfs1". 190801-15:47:55,669 nipype.workflow INFO: [Node] Setting-up "_ds_surfs2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs2". 190801-15:47:55,676 nipype.workflow INFO: [Node] Running "_ds_surfs2" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:55,681 nipype.workflow INFO: [Node] Finished "_ds_surfs2". 190801-15:47:55,682 nipype.workflow INFO: [Node] Setting-up "_ds_surfs3" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs3". 190801-15:47:55,689 nipype.workflow INFO: [Node] Running "_ds_surfs3" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:55,694 nipype.workflow INFO: [Node] Finished "_ds_surfs3". 190801-15:47:55,695 nipype.workflow INFO: [Node] Setting-up "_ds_surfs4" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs4". 190801-15:47:55,702 nipype.workflow INFO: [Node] Running "_ds_surfs4" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:55,707 nipype.workflow INFO: [Node] Finished "_ds_surfs4". 190801-15:47:55,708 nipype.workflow INFO: [Node] Setting-up "_ds_surfs5" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs5". 190801-15:47:55,715 nipype.workflow INFO: [Node] Running "_ds_surfs5" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:55,720 nipype.workflow INFO: [Node] Finished "_ds_surfs5". 190801-15:47:55,721 nipype.workflow INFO: [Node] Setting-up "_ds_surfs6" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs6". 190801-15:47:55,728 nipype.workflow INFO: [Node] Running "_ds_surfs6" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:55,733 nipype.workflow INFO: [Node] Finished "_ds_surfs6". 190801-15:47:55,734 nipype.workflow INFO: [Node] Setting-up "_ds_surfs7" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs7". 190801-15:47:55,741 nipype.workflow INFO: [Node] Running "_ds_surfs7" ("smriprep.interfaces.DerivativesDataSink") 190801-15:47:55,746 nipype.workflow INFO: [Node] Finished "_ds_surfs7". 190801-15:47:55,750 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_surfs". 190801-15:47:55,750 nipype.workflow INFO: [Job 407] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_surfs). 190801-15:47:57,552 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.36/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:48:33,832 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190801-15:48:35,595 nipype.workflow INFO: [Job 172] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask). 190801-15:48:35,597 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 164.56/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:48:35,682 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_tpl_mask". 190801-15:48:35,687 nipype.workflow INFO: [Node] Running "ds_tpl_mask" ("smriprep.interfaces.DerivativesDataSink") 190801-15:48:36,77 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask". 190801-15:48:36,77 nipype.workflow INFO: [Job 173] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask). 190801-15:48:36,164 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/norm_msk". 190801-15:48:36,169 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190801-15:48:37,288 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190801-15:48:37,597 nipype.workflow INFO: [Job 176] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk). 190801-15:48:37,599 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 164.56/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:48:37,679 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/norm_rpt". 190801-15:48:37,683 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190801-15:48:39,602 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.46/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:48:40,870 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190801-15:48:41,603 nipype.workflow INFO: [Job 238] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg). 190801-15:48:41,605 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 164.66/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:48:41,691 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/lut_tpl_seg". 190801-15:48:41,695 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190801-15:48:41,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190801-15:48:43,604 nipype.workflow INFO: [Job 239] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg). 190801-15:48:43,607 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 164.66/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:48:43,694 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/ds_tpl_seg". 190801-15:48:43,699 nipype.workflow INFO: [Node] Running "ds_tpl_seg" ("smriprep.interfaces.DerivativesDataSink") 190801-15:48:44,221 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190801-15:48:45,292 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg". 190801-15:48:45,292 nipype.workflow INFO: [Job 240] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg). 190801-15:48:45,605 nipype.workflow INFO: [Job 177] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt). 190801-15:48:45,607 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:48:45,685 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/ds_t1_2_tpl_report". 190801-15:48:45,689 nipype.workflow INFO: [Node] Running "ds_t1_2_tpl_report" ("smriprep.interfaces.DerivativesDataSink") 190801-15:48:45,695 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report". 190801-15:48:45,695 nipype.workflow INFO: [Job 178] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report). 190801-15:48:45,820 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_to_t1w_transform". 190801-15:48:45,833 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190801-15:48:47,608 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 161.71/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:19,669 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform". 190801-15:49:21,640 nipype.workflow INFO: [Job 199] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_to_t1w_transform). 190801-15:49:21,642 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:21,766 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/merge". 190801-15:49:21,780 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190801-15:49:23,643 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 164.63/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:28,774 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge". 190801-15:49:29,647 nipype.workflow INFO: [Job 200] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.merge). 190801-15:49:29,650 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:29,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_t1". 190801-15:49:29,739 nipype.workflow INFO: [Node] Running "ds_bold_t1" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:49:34,108 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1". 190801-15:49:34,108 nipype.workflow INFO: [Job 201] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1). 190801-15:49:34,221 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.resampling_xfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/resampling_xfm". 190801-15:49:34,221 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.rename_src" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/rename_src". 190801-15:49:34,227 nipype.workflow INFO: [Node] Setting-up "_rename_src0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0". 190801-15:49:34,230 nipype.workflow INFO: [Node] Running "resampling_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta identity.nofile --outlta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta --src /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/merge/vol0000_xform-00000_merged.nii --trg /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz 190801-15:49:34,232 nipype.workflow INFO: [Node] Running "_rename_src0" ("nipype.interfaces.utility.base.Rename") 190801-15:49:34,237 nipype.workflow INFO: [Node] Finished "_rename_src0". 190801-15:49:34,239 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.rename_src". 190801-15:49:34,239 nipype.workflow INFO: [Job 204] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.rename_src). 190801-15:49:34,329 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 164.55/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.resampling_xfm * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:34,333 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/validate". 190801-15:49:34,340 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190801-15:49:34,347 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate". 190801-15:49:34,384 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.resampling_xfm". 190801-15:49:36,330 nipype.workflow INFO: [Job 202] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.resampling_xfm). 190801-15:49:36,330 nipype.workflow INFO: [Job 211] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.validate). 190801-15:49:36,332 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:36,416 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.set_xfm_source" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/set_xfm_source". 190801-15:49:36,417 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 190801-15:49:36,422 nipype.workflow INFO: [Node] Running "set_xfm_source" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta -out_type 1 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/resampling_xfm/out.lta /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/t1_2_fsnative_xfm/out.lta out_concat.lta 190801-15:49:36,423 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190801-15:49:36,478 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 190801-15:49:36,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.set_xfm_source". 190801-15:49:38,331 nipype.workflow INFO: [Job 203] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.set_xfm_source). 190801-15:49:38,332 nipype.workflow INFO: [Job 212] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref). 190801-15:49:38,334 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:38,458 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_rh/sampler". 190801-15:49:38,462 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/calc_dummy_scans". 190801-15:49:38,463 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_lh/sampler". 190801-15:49:38,466 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0". 190801-15:49:38,468 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190801-15:49:38,472 nipype.workflow INFO: [Node] Setting-up "_sampler0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0". 190801-15:49:38,473 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans". 190801-15:49:38,473 nipype.workflow INFO: [Job 213] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans). 190801-15:49:38,473 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi rh --interp trilinear --o /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_rh/sampler/mapflow/_sampler0/rh.fsaverage.gii --srcsubject sub-001 --reg /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190801-15:49:38,479 nipype.workflow INFO: [Node] Running "_sampler0" ("nipype.interfaces.freesurfer.utils.SampleToSurface"), a CommandLine Interface with command: mri_vol2surf --cortex --hemi lh --interp trilinear --o /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/_hemi_lh/sampler/mapflow/_sampler0/lh.fsaverage.gii --srcsubject sub-001 --reg /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/set_xfm_source/out_concat.lta --projfrac-avg 0.000 1.000 0.200 --mov /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/rename_src/mapflow/_rename_src0/fsaverage.nii --trgsubject fsaverage 190801-15:49:38,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr". 190801-15:49:38,560 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190801-15:49:38,578 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190801-15:49:38,578 nipype.workflow INFO: [Job 218] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190801-15:49:40,334 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:40,422 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 190801-15:49:40,428 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190801-15:49:41,735 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190801-15:49:42,336 nipype.workflow INFO: [Job 219] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190801-15:49:42,338 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:42,427 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_t1_ref". 190801-15:49:42,432 nipype.workflow INFO: [Node] Running "ds_bold_t1_ref" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:49:42,482 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1_ref". 190801-15:49:42,483 nipype.workflow INFO: [Job 220] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_t1_ref). 190801-15:49:42,578 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 190801-15:49:42,583 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190801-15:49:43,801 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190801-15:49:44,339 nipype.workflow INFO: [Job 221] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190801-15:49:44,341 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:44,428 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 190801-15:49:44,434 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190801-15:49:44,706 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190801-15:49:46,343 nipype.workflow INFO: [Job 222] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190801-15:49:46,345 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:46,433 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 190801-15:49:46,438 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190801-15:49:46,581 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190801-15:49:48,345 nipype.workflow INFO: [Job 223] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190801-15:49:48,347 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:48,435 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 190801-15:49:48,442 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 190801-15:49:49,453 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190801-15:49:50,348 nipype.workflow INFO: [Job 224] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190801-15:49:50,351 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:50,442 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 190801-15:49:50,446 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190801-15:49:50,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190801-15:49:52,352 nipype.workflow INFO: [Job 225] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190801-15:49:52,354 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:52,463 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 190801-15:49:52,470 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 190801-15:49:52,679 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190801-15:49:54,354 nipype.workflow INFO: [Job 226] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190801-15:49:54,356 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:54,455 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 190801-15:49:54,460 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190801-15:49:54,478 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190801-15:49:56,356 nipype.workflow INFO: [Job 227] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190801-15:49:56,358 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:56,451 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 190801-15:49:56,458 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190801-15:49:56,638 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190801-15:49:58,358 nipype.workflow INFO: [Job 228] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190801-15:49:58,360 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:49:58,447 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 190801-15:49:58,452 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 190801-15:49:58,586 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190801-15:50:00,361 nipype.workflow INFO: [Job 229] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190801-15:50:00,364 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 164.00/168.76, Free processors: 6/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:06,664 nipype.workflow INFO: [Node] Finished "_sampler0". 190801-15:50:06,668 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler". 190801-15:50:07,483 nipype.workflow INFO: [Node] Finished "_sampler0". 190801-15:50:07,486 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler". 190801-15:50:08,371 nipype.workflow INFO: [Job 205] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler). 190801-15:50:08,372 nipype.workflow INFO: [Job 206] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.sampler). 190801-15:50:08,374 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:08,465 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.merger" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/merger". 190801-15:50:08,469 nipype.workflow INFO: [Node] Running "merger" ("nipype.interfaces.utility.base.Merge") 190801-15:50:08,474 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.merger". 190801-15:50:08,474 nipype.workflow INFO: [Job 207] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.merger). 190801-15:50:10,375 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:12,376 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:12,465 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190801-15:50:12,466 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190801-15:50:12,471 nipype.workflow INFO: [Node] Running "_update_metadata0" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190801-15:50:12,471 nipype.workflow INFO: [Node] Running "_update_metadata1" ("niworkflows.interfaces.surf.GiftiSetAnatomicalStructure") 190801-15:50:14,377 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 164.74/168.76, Free processors: 6/24. Currently running: * _update_metadata1 * _update_metadata0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:24,44 nipype.workflow INFO: [Node] Finished "_update_metadata1". 190801-15:50:24,74 nipype.workflow INFO: [Node] Finished "_update_metadata0". 190801-15:50:24,390 nipype.workflow INFO: [Job 455] Completed (_update_metadata0). 190801-15:50:24,390 nipype.workflow INFO: [Job 456] Completed (_update_metadata1). 190801-15:50:24,391 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:24,481 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.update_metadata" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata". 190801-15:50:24,486 nipype.workflow INFO: [Node] Setting-up "_update_metadata0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata0". 190801-15:50:24,487 nipype.workflow INFO: [Node] Cached "_update_metadata0" - collecting precomputed outputs 190801-15:50:24,487 nipype.workflow INFO: [Node] "_update_metadata0" found cached. 190801-15:50:24,487 nipype.workflow INFO: [Node] Setting-up "_update_metadata1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_surf_wf/update_metadata/mapflow/_update_metadata1". 190801-15:50:24,488 nipype.workflow INFO: [Node] Cached "_update_metadata1" - collecting precomputed outputs 190801-15:50:24,488 nipype.workflow INFO: [Node] "_update_metadata1" found cached. 190801-15:50:24,491 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.update_metadata". 190801-15:50:26,393 nipype.workflow INFO: [Job 208] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_surf_wf.update_metadata). 190801-15:50:26,395 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:28,398 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:28,489 nipype.workflow INFO: [Node] Setting-up "_name_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs/mapflow/_name_surfs0". 190801-15:50:28,493 nipype.workflow INFO: [Node] Running "_name_surfs0" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:50:28,498 nipype.workflow INFO: [Node] Finished "_name_surfs0". 190801-15:50:28,498 nipype.workflow INFO: [Job 457] Completed (_name_surfs0). 190801-15:50:28,609 nipype.workflow INFO: [Node] Setting-up "_name_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs/mapflow/_name_surfs1". 190801-15:50:28,613 nipype.workflow INFO: [Node] Running "_name_surfs1" ("niworkflows.interfaces.surf.GiftiNameSource") 190801-15:50:28,618 nipype.workflow INFO: [Node] Finished "_name_surfs1". 190801-15:50:28,618 nipype.workflow INFO: [Job 458] Completed (_name_surfs1). 190801-15:50:30,401 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:30,485 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.name_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs". 190801-15:50:30,489 nipype.workflow INFO: [Node] Setting-up "_name_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs/mapflow/_name_surfs0". 190801-15:50:30,490 nipype.workflow INFO: [Node] Cached "_name_surfs0" - collecting precomputed outputs 190801-15:50:30,490 nipype.workflow INFO: [Node] "_name_surfs0" found cached. 190801-15:50:30,490 nipype.workflow INFO: [Node] Setting-up "_name_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/name_surfs/mapflow/_name_surfs1". 190801-15:50:30,491 nipype.workflow INFO: [Node] Cached "_name_surfs1" - collecting precomputed outputs 190801-15:50:30,491 nipype.workflow INFO: [Node] "_name_surfs1" found cached. 190801-15:50:30,494 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.name_surfs". 190801-15:50:30,494 nipype.workflow INFO: [Job 209] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.name_surfs). 190801-15:50:32,403 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:34,406 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:34,490 nipype.workflow INFO: [Node] Setting-up "_ds_bold_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs/mapflow/_ds_bold_surfs0". 190801-15:50:34,495 nipype.workflow INFO: [Node] Running "_ds_bold_surfs0" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:50:34,501 nipype.workflow INFO: [Node] Finished "_ds_bold_surfs0". 190801-15:50:34,501 nipype.workflow INFO: [Job 459] Completed (_ds_bold_surfs0). 190801-15:50:34,579 nipype.workflow INFO: [Node] Setting-up "_ds_bold_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs/mapflow/_ds_bold_surfs1". 190801-15:50:34,584 nipype.workflow INFO: [Node] Running "_ds_bold_surfs1" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:50:34,590 nipype.workflow INFO: [Node] Finished "_ds_bold_surfs1". 190801-15:50:34,590 nipype.workflow INFO: [Job 460] Completed (_ds_bold_surfs1). 190801-15:50:36,408 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:50:36,499 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_surfs" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs". 190801-15:50:36,504 nipype.workflow INFO: [Node] Setting-up "_ds_bold_surfs0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs/mapflow/_ds_bold_surfs0". 190801-15:50:36,511 nipype.workflow INFO: [Node] Running "_ds_bold_surfs0" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:50:36,516 nipype.workflow INFO: [Node] Finished "_ds_bold_surfs0". 190801-15:50:36,517 nipype.workflow INFO: [Node] Setting-up "_ds_bold_surfs1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_bold_surfs/mapflow/_ds_bold_surfs1". 190801-15:50:36,523 nipype.workflow INFO: [Node] Running "_ds_bold_surfs1" ("fmriprep.interfaces.DerivativesDataSink") 190801-15:50:36,528 nipype.workflow INFO: [Node] Finished "_ds_bold_surfs1". 190801-15:50:36,531 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_surfs". 190801-15:50:36,531 nipype.workflow INFO: [Job 210] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_surfs). 190801-15:50:38,409 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 164.76/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:51:08,486 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration". 190801-15:51:10,448 nipype.workflow INFO: [Job 159] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration). 190801-15:51:10,453 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 166.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:51:10,580 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_t1_tpl_inv_warp". 190801-15:51:10,585 nipype.workflow INFO: [Node] Running "ds_t1_tpl_inv_warp" ("smriprep.interfaces.DerivativesDataSink") 190801-15:51:10,591 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp". 190801-15:51:10,591 nipype.workflow INFO: [Job 160] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp). 190801-15:51:10,669 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_t1_tpl_warp". 190801-15:51:10,674 nipype.workflow INFO: [Node] Running "ds_t1_tpl_warp" ("smriprep.interfaces.DerivativesDataSink") 190801-15:51:10,679 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp". 190801-15:51:10,679 nipype.workflow INFO: [Job 161] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp). 190801-15:51:10,760 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_mask". 190801-15:51:10,763 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_moving". 190801-15:51:10,766 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine/sub-001_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190801-15:51:10,769 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-001_T1w_corrected_xform_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190801-15:51:10,773 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_seg". 190801-15:51:10,779 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190801-15:51:12,451 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 3 jobs ready. Free memory (GB): 166.16/168.76, Free processors: 13/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:51:12,537 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms0". 190801-15:51:12,538 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms1". 190801-15:51:12,540 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms2". 190801-15:51:12,545 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190801-15:51:12,547 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190801-15:51:12,547 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-1_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190801-15:51:14,453 nipype.workflow INFO: [MultiProc] Running 7 tasks, and 0 jobs ready. Free memory (GB): 165.56/168.76, Free processors: 10/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:51:34,614 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190801-15:51:34,617 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190801-15:51:34,700 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190801-15:51:36,484 nipype.workflow INFO: [Job 461] Completed (_tpl_tpms0). 190801-15:51:36,484 nipype.workflow INFO: [Job 462] Completed (_tpl_tpms1). 190801-15:51:36,484 nipype.workflow INFO: [Job 463] Completed (_tpl_tpms2). 190801-15:51:36,486 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 166.16/168.76, Free processors: 13/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:51:36,574 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms". 190801-15:51:36,580 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms0". 190801-15:51:36,581 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190801-15:51:36,581 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190801-15:51:36,582 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms1". 190801-15:51:36,583 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190801-15:51:36,583 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190801-15:51:36,583 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/tpl_tpms/mapflow/_tpl_tpms2". 190801-15:51:36,585 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190801-15:51:36,585 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190801-15:51:36,587 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190801-15:51:38,487 nipype.workflow INFO: [Job 231] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms). 190801-15:51:38,489 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 166.16/168.76, Free processors: 13/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:51:38,575 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_tpl_tpms". 190801-15:51:38,579 nipype.workflow INFO: [Node] Running "ds_tpl_tpms" ("smriprep.interfaces.DerivativesDataSink") 190801-15:51:41,101 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms". 190801-15:51:41,101 nipype.workflow INFO: [Job 232] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms). 190801-15:51:41,214 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 166.16/168.76, Free processors: 13/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:51:47,731 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190801-15:51:49,223 nipype.workflow INFO: [Job 164] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving). 190801-15:51:49,225 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 166.36/168.76, Free processors: 14/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:51:49,309 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_t1_tpl". 190801-15:51:49,314 nipype.workflow INFO: [Node] Running "ds_t1_tpl" ("smriprep.interfaces.DerivativesDataSink") 190801-15:51:51,63 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl". 190801-15:51:51,63 nipype.workflow INFO: [Job 165] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl). 190801-15:51:51,224 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 166.36/168.76, Free processors: 14/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:52:42,607 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190801-15:52:43,297 nipype.workflow INFO: [Job 162] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask). 190801-15:52:43,299 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 166.56/168.76, Free processors: 15/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:52:43,415 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_tpl_mask". 190801-15:52:43,419 nipype.workflow INFO: [Node] Running "ds_tpl_mask" ("smriprep.interfaces.DerivativesDataSink") 190801-15:52:43,794 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask". 190801-15:52:43,794 nipype.workflow INFO: [Job 163] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask). 190801-15:52:43,878 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/norm_msk". 190801-15:52:43,883 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190801-15:52:45,21 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190801-15:52:45,299 nipype.workflow INFO: [Job 166] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk). 190801-15:52:45,301 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 166.56/168.76, Free processors: 15/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:52:45,388 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/norm_rpt". 190801-15:52:45,392 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190801-15:52:47,303 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 166.46/168.76, Free processors: 14/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:52:50,472 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190801-15:52:51,307 nipype.workflow INFO: [Job 233] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg). 190801-15:52:51,309 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 166.66/168.76, Free processors: 15/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:52:51,398 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/lut_tpl_seg". 190801-15:52:51,403 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190801-15:52:51,630 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190801-15:52:52,328 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190801-15:52:53,310 nipype.workflow INFO: [Job 167] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt). 190801-15:52:53,311 nipype.workflow INFO: [Job 234] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg). 190801-15:52:53,313 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 166.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-15:52:53,401 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/ds_t1_2_tpl_report". 190801-15:52:53,405 nipype.workflow INFO: [Node] Running "ds_t1_2_tpl_report" ("smriprep.interfaces.DerivativesDataSink") 190801-15:52:53,411 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report". 190801-15:52:53,411 nipype.workflow INFO: [Job 168] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report). 190801-15:52:53,501 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsym/ds_tpl_seg". 190801-15:52:53,505 nipype.workflow INFO: [Node] Running "ds_tpl_seg" ("smriprep.interfaces.DerivativesDataSink") 190801-15:52:55,142 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg". 190801-15:52:55,142 nipype.workflow INFO: [Job 235] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg). 190801-15:52:55,311 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 166.76/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration 190801-16:02:18,335 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration". 190801-16:02:20,94 nipype.workflow INFO: [Job 179] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.registration). 190801-16:02:20,96 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:02:20,179 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl_inv_warp". 190801-16:02:20,185 nipype.workflow INFO: [Node] Running "ds_t1_tpl_inv_warp" ("smriprep.interfaces.DerivativesDataSink") 190801-16:02:20,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp". 190801-16:02:20,193 nipype.workflow INFO: [Job 180] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp). 190801-16:02:20,270 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl_warp". 190801-16:02:20,274 nipype.workflow INFO: [Node] Running "ds_t1_tpl_warp" ("smriprep.interfaces.DerivativesDataSink") 190801-16:02:20,281 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp". 190801-16:02:20,281 nipype.workflow INFO: [Job 181] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp). 190801-16:02:20,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_mask". 190801-16:02:20,364 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_moving". 190801-16:02:20,367 nipype.workflow INFO: [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/refine/sub-001_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190801-16:02:20,370 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-001_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-001_T1w_corrected_xform_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190801-16:02:20,375 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_seg". 190801-16:02:20,380 nipype.workflow INFO: [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-001_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190801-16:02:22,98 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 168.16/168.76, Free processors: 21/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190801-16:02:22,183 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms0". 190801-16:02:22,184 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms1". 190801-16:02:22,188 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms2". 190801-16:02:22,190 nipype.workflow INFO: [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190801-16:02:22,191 nipype.workflow INFO: [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190801-16:02:22,196 nipype.workflow INFO: [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/t1_seg/sub-001_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-001_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190801-16:02:24,103 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 0 jobs ready. Free memory (GB): 167.56/168.76, Free processors: 18/24. Currently running: * _tpl_tpms2 * _tpl_tpms1 * _tpl_tpms0 * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190801-16:02:43,305 nipype.workflow INFO: [Node] Finished "_tpl_tpms0". 190801-16:02:43,402 nipype.workflow INFO: [Node] Finished "_tpl_tpms1". 190801-16:02:43,494 nipype.workflow INFO: [Node] Finished "_tpl_tpms2". 190801-16:02:44,128 nipype.workflow INFO: [Job 464] Completed (_tpl_tpms0). 190801-16:02:44,128 nipype.workflow INFO: [Job 465] Completed (_tpl_tpms1). 190801-16:02:44,129 nipype.workflow INFO: [Job 466] Completed (_tpl_tpms2). 190801-16:02:44,130 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 168.16/168.76, Free processors: 21/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190801-16:02:44,217 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms". 190801-16:02:44,223 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms0" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms0". 190801-16:02:44,224 nipype.workflow INFO: [Node] Cached "_tpl_tpms0" - collecting precomputed outputs 190801-16:02:44,224 nipype.workflow INFO: [Node] "_tpl_tpms0" found cached. 190801-16:02:44,225 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms1" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms1". 190801-16:02:44,226 nipype.workflow INFO: [Node] Cached "_tpl_tpms1" - collecting precomputed outputs 190801-16:02:44,226 nipype.workflow INFO: [Node] "_tpl_tpms1" found cached. 190801-16:02:44,227 nipype.workflow INFO: [Node] Setting-up "_tpl_tpms2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms2". 190801-16:02:44,228 nipype.workflow INFO: [Node] Cached "_tpl_tpms2" - collecting precomputed outputs 190801-16:02:44,228 nipype.workflow INFO: [Node] "_tpl_tpms2" found cached. 190801-16:02:44,231 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms". 190801-16:02:46,132 nipype.workflow INFO: [Job 241] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms). 190801-16:02:46,134 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 168.16/168.76, Free processors: 21/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190801-16:02:46,218 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_tpms". 190801-16:02:46,223 nipype.workflow INFO: [Node] Running "ds_tpl_tpms" ("smriprep.interfaces.DerivativesDataSink") 190801-16:02:48,511 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms". 190801-16:02:48,511 nipype.workflow INFO: [Job 242] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms). 190801-16:02:48,599 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 168.16/168.76, Free processors: 21/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190801-16:02:55,129 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 190801-16:02:56,613 nipype.workflow INFO: [Job 184] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_moving). 190801-16:02:56,615 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.36/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190801-16:02:56,699 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl". 190801-16:02:56,703 nipype.workflow INFO: [Node] Running "ds_t1_tpl" ("smriprep.interfaces.DerivativesDataSink") 190801-16:02:58,277 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl". 190801-16:02:58,277 nipype.workflow INFO: [Job 185] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl). 190801-16:02:58,615 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.36/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask 190801-16:03:44,408 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask". 190801-16:03:44,699 nipype.workflow INFO: [Job 182] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_mask). 190801-16:03:44,701 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg 190801-16:03:44,785 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_mask". 190801-16:03:44,791 nipype.workflow INFO: [Node] Running "ds_tpl_mask" ("smriprep.interfaces.DerivativesDataSink") 190801-16:03:45,182 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask". 190801-16:03:45,183 nipype.workflow INFO: [Job 183] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask). 190801-16:03:45,264 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/norm_msk". 190801-16:03:45,269 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 190801-16:03:46,384 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk". 190801-16:03:46,701 nipype.workflow INFO: [Job 186] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_msk). 190801-16:03:46,703 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg 190801-16:03:46,789 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/norm_rpt". 190801-16:03:46,793 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 190801-16:03:48,704 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.46/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg 190801-16:03:50,865 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg". 190801-16:03:52,712 nipype.workflow INFO: [Job 243] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.tpl_seg). 190801-16:03:52,714 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.66/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt 190801-16:03:52,832 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.outputnode" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/outputnode". 190801-16:03:52,832 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/lut_tpl_seg". 190801-16:03:52,837 nipype.workflow INFO: [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function") 190801-16:03:52,838 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190801-16:03:52,844 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.outputnode". 190801-16:03:53,54 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg". 190801-16:03:53,160 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt". 190801-16:03:54,717 nipype.workflow INFO: [Job 187] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.norm_rpt). 190801-16:03:54,718 nipype.workflow INFO: [Job 244] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.outputnode). 190801-16:03:54,719 nipype.workflow INFO: [Job 355] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg). 190801-16:03:54,721 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:03:54,851 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/ds_t1_2_tpl_report". 190801-16:03:54,856 nipype.workflow INFO: [Node] Running "ds_t1_2_tpl_report" ("smriprep.interfaces.DerivativesDataSink") 190801-16:03:54,862 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report". 190801-16:03:54,863 nipype.workflow INFO: [Job 188] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report). 190801-16:03:54,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/select_std". 190801-16:03:54,987 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190801-16:03:54,992 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std". 190801-16:03:54,992 nipype.workflow INFO: [Job 245] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std). 190801-16:03:55,111 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/select_std". 190801-16:03:55,116 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190801-16:03:55,121 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std". 190801-16:03:55,121 nipype.workflow INFO: [Job 275] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std). 190801-16:03:55,239 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/select_std". 190801-16:03:55,243 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190801-16:03:55,248 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std". 190801-16:03:55,248 nipype.workflow INFO: [Job 305] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_std). 190801-16:03:55,365 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.carpetplot_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/carpetplot_wf/select_std". 190801-16:03:55,370 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190801-16:03:55,373 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.carpetplot_wf.select_std" (/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/carpetplot_wf/select_std) 190801-16:03:55,376 nipype.workflow ERROR: Node select_std failed to run on host node-i10. 190801-16:03:55,377 nipype.workflow ERROR: Saving crash info to /CALM_BIDS_New_2/derivatives/fmriprep_1.4.1.carpetplot/fmriprep/sub-001/log/20190801-111436_c41c369c-cc95-4f7f-89a9-0e3ff6b9206a/crash-20190801-160355-jj02-select_std-bfd5fe7b-f6a3-42d2-aa25-4cf4f2530cd2.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 316, in _send_procs_to_workers self.procs[jobid].run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 377, in run outputs = self.aggregate_outputs(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 455, in aggregate_outputs predicted_outputs = self._list_outputs() File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/utility.py", line 152, in _list_outputs for k in self._fields} File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/utility.py", line 152, in for k in self._fields} IndexError: list index out of range 190801-16:03:55,378 nipype.workflow INFO: [Job 352] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.carpetplot_wf.select_std). 190801-16:03:55,496 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_seg". 190801-16:03:55,503 nipype.workflow INFO: [Node] Running "ds_tpl_seg" ("smriprep.interfaces.DerivativesDataSink") 190801-16:03:56,996 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg". 190801-16:03:56,997 nipype.workflow INFO: [Job 356] Completed (fmriprep_wf.single_subject_001_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg). 190801-16:03:57,121 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 9 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:03:57,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge_xforms". 190801-16:03:57,253 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190801-16:03:57,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms". 190801-16:03:57,258 nipype.workflow INFO: [Job 246] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms). 190801-16:03:57,334 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_merge_tfms". 190801-16:03:57,339 nipype.workflow INFO: [Node] Running "mask_merge_tfms" ("nipype.interfaces.utility.base.Merge") 190801-16:03:57,344 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms". 190801-16:03:57,344 nipype.workflow INFO: [Job 247] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms). 190801-16:03:57,420 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/select_tpl". 190801-16:03:57,425 nipype.workflow INFO: [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function") 190801-16:03:57,432 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl". 190801-16:03:57,432 nipype.workflow INFO: [Job 248] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl). 190801-16:03:57,508 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge_xforms". 190801-16:03:57,513 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190801-16:03:57,518 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms". 190801-16:03:57,518 nipype.workflow INFO: [Job 276] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms). 190801-16:03:57,594 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_merge_tfms". 190801-16:03:57,599 nipype.workflow INFO: [Node] Running "mask_merge_tfms" ("nipype.interfaces.utility.base.Merge") 190801-16:03:57,603 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms". 190801-16:03:57,603 nipype.workflow INFO: [Job 277] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms). 190801-16:03:57,679 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/select_tpl". 190801-16:03:57,683 nipype.workflow INFO: [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function") 190801-16:03:57,691 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl". 190801-16:03:57,691 nipype.workflow INFO: [Job 278] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl). 190801-16:03:57,767 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/merge_xforms". 190801-16:03:57,773 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 190801-16:03:57,778 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms". 190801-16:03:57,778 nipype.workflow INFO: [Job 306] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge_xforms). 190801-16:03:57,853 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/mask_merge_tfms". 190801-16:03:57,859 nipype.workflow INFO: [Node] Running "mask_merge_tfms" ("nipype.interfaces.utility.base.Merge") 190801-16:03:57,863 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms". 190801-16:03:57,863 nipype.workflow INFO: [Job 307] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_merge_tfms). 190801-16:03:57,939 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/select_tpl". 190801-16:03:57,945 nipype.workflow INFO: [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function") 190801-16:03:57,952 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl". 190801-16:03:57,952 nipype.workflow INFO: [Job 308] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl). 190801-16:03:59,121 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:03:59,224 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref". 190801-16:03:59,228 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/gen_ref". 190801-16:03:59,229 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190801-16:03:59,231 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/gen_ref". 190801-16:03:59,233 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190801-16:03:59,236 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 190801-16:03:59,238 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref". 190801-16:03:59,241 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref". 190801-16:03:59,416 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref". 190801-16:04:01,126 nipype.workflow INFO: [Job 249] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref). 190801-16:04:01,127 nipype.workflow INFO: [Job 279] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref). 190801-16:04:01,128 nipype.workflow INFO: [Job 309] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref). 190801-16:04:01,130 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:04:01,257 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aparc_std_tfm". 190801-16:04:01,260 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/aseg_std_tfm". 190801-16:04:01,265 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190801-16:04:01,267 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 190801-16:04:01,282 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm". 190801-16:04:01,283 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform". 190801-16:04:01,283 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aparc_std_tfm". 190801-16:04:01,286 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/aseg_std_tfm". 190801-16:04:01,289 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190801-16:04:01,291 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190801-16:04:01,293 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 190801-16:04:01,297 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190801-16:04:01,308 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/bold_to_std_transform". 190801-16:04:01,308 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm". 190801-16:04:01,310 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/aparc_std_tfm". 190801-16:04:01,313 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/aseg_std_tfm". 190801-16:04:01,316 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190801-16:04:01,319 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190801-16:04:01,324 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190801-16:04:01,324 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 190801-16:04:03,130 nipype.workflow INFO: [MultiProc] Running 10 tasks, and 2 jobs ready. Free memory (GB): 154.66/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm 190801-16:04:03,530 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190801-16:04:04,735 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190801-16:04:04,776 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190801-16:04:05,130 nipype.workflow INFO: [Job 250] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm). 190801-16:04:05,131 nipype.workflow INFO: [Job 252] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm). 190801-16:04:05,132 nipype.workflow INFO: [Job 260] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm). 190801-16:04:05,134 nipype.workflow INFO: [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 157.66/168.76, Free processors: 3/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:04:05,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_aparc_std". 190801-16:04:05,252 nipype.workflow INFO: [Node] Running "ds_bold_aparc_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:04:05,340 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std". 190801-16:04:05,340 nipype.workflow INFO: [Job 251] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std). 190801-16:04:05,447 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_aseg_std". 190801-16:04:05,452 nipype.workflow INFO: [Node] Running "ds_bold_aseg_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:04:05,561 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std". 190801-16:04:05,561 nipype.workflow INFO: [Job 253] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std). 190801-16:04:05,688 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_mask_std". 190801-16:04:05,708 nipype.workflow INFO: [Node] Running "ds_bold_mask_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:04:05,760 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std". 190801-16:04:05,760 nipype.workflow INFO: [Job 261] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std). 190801-16:04:05,854 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate". 190801-16:04:05,857 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/mask_std_tfm". 190801-16:04:05,862 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190801-16:04:05,863 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /templateflow/tpl-MNIPediatricAsym/cohort-1/tpl-MNIPediatricAsym_cohort-1_res-2_T1w.nii.gz --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsym/registration/ants_t1_to_mniComposite.h5 --transform /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 190801-16:04:06,72 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190801-16:04:07,131 nipype.workflow INFO: [Job 262] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190801-16:04:07,134 nipype.workflow INFO: [MultiProc] Running 8 tasks, and 1 jobs ready. Free memory (GB): 156.66/168.76, Free processors: 2/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:04:09,38 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190801-16:04:09,132 nipype.workflow INFO: [Job 290] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm). 190801-16:04:09,135 nipype.workflow INFO: [MultiProc] Running 7 tasks, and 3 jobs ready. Free memory (GB): 157.66/168.76, Free processors: 3/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:04:09,222 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_mask_std". 190801-16:04:09,227 nipype.workflow INFO: [Node] Running "ds_bold_mask_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:04:09,327 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std". 190801-16:04:09,327 nipype.workflow INFO: [Job 291] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std). 190801-16:04:09,410 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate". 190801-16:04:09,416 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190801-16:04:10,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190801-16:04:11,134 nipype.workflow INFO: [Job 292] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190801-16:04:11,137 nipype.workflow INFO: [MultiProc] Running 7 tasks, and 1 jobs ready. Free memory (GB): 157.66/168.76, Free processors: 3/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:04:12,323 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190801-16:04:12,533 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190801-16:04:13,136 nipype.workflow INFO: [Job 280] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm). 190801-16:04:13,137 nipype.workflow INFO: [Job 282] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm). 190801-16:04:13,140 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 159.66/168.76, Free processors: 5/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:04:13,227 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_aparc_std". 190801-16:04:13,231 nipype.workflow INFO: [Node] Running "ds_bold_aparc_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:04:13,453 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std". 190801-16:04:13,454 nipype.workflow INFO: [Job 281] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std). 190801-16:04:13,537 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_aseg_std". 190801-16:04:13,542 nipype.workflow INFO: [Node] Running "ds_bold_aseg_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:04:13,823 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std". 190801-16:04:13,824 nipype.workflow INFO: [Job 283] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std). 190801-16:04:14,711 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm". 190801-16:04:14,811 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm". 190801-16:04:14,859 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm". 190801-16:04:15,137 nipype.workflow INFO: [Job 310] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aparc_std_tfm). 190801-16:04:15,138 nipype.workflow INFO: [Job 312] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.aseg_std_tfm). 190801-16:04:15,139 nipype.workflow INFO: [Job 320] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.mask_std_tfm). 190801-16:04:15,141 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:04:15,232 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_aparc_std". 190801-16:04:15,247 nipype.workflow INFO: [Node] Running "ds_bold_aparc_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:04:15,484 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std". 190801-16:04:15,484 nipype.workflow INFO: [Job 311] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aparc_std). 190801-16:04:15,571 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_aseg_std". 190801-16:04:15,578 nipype.workflow INFO: [Node] Running "ds_bold_aseg_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:04:15,903 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std". 190801-16:04:15,903 nipype.workflow INFO: [Job 313] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_aseg_std). 190801-16:04:16,26 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/bold_to_std_transform". 190801-16:04:16,41 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 190801-16:04:17,140 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 159.62/168.76, Free processors: 0/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:02,610 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190801-16:05:03,184 nipype.workflow INFO: [Job 254] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform). 190801-16:05:03,187 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:03,294 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_mask_std". 190801-16:05:03,298 nipype.workflow INFO: [Node] Running "ds_bold_mask_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:05:03,312 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge". 190801-16:05:03,325 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190801-16:05:03,401 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std". 190801-16:05:03,401 nipype.workflow INFO: [Job 321] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_mask_std). 190801-16:05:03,515 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/pre_mask_dilate". 190801-16:05:03,521 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 190801-16:05:05,3 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 190801-16:05:05,187 nipype.workflow INFO: [Job 322] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 190801-16:05:05,189 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 162.28/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:20,4 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge". 190801-16:05:21,208 nipype.workflow INFO: [Job 255] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge). 190801-16:05:21,210 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:21,296 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_std". 190801-16:05:21,301 nipype.workflow INFO: [Node] Running "ds_bold_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:05:32,557 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std". 190801-16:05:32,557 nipype.workflow INFO: [Job 256] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std). 190801-16:05:32,697 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 162.65/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:32,702 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate". 190801-16:05:32,707 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190801-16:05:32,726 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190801-16:05:34,701 nipype.workflow INFO: [Job 257] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate). 190801-16:05:34,703 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:34,790 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref". 190801-16:05:34,795 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190801-16:05:35,165 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190801-16:05:36,702 nipype.workflow INFO: [Job 258] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref). 190801-16:05:36,704 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:36,791 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/calc_dummy_scans". 190801-16:05:36,802 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190801-16:05:36,807 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans". 190801-16:05:36,807 nipype.workflow INFO: [Job 259] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans). 190801-16:05:36,896 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr". 190801-16:05:36,900 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190801-16:05:36,927 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190801-16:05:36,928 nipype.workflow INFO: [Job 263] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190801-16:05:38,705 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:38,796 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct". 190801-16:05:38,805 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190801-16:05:40,710 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 162.46/168.76, Free processors: 7/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:40,889 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190801-16:05:42,710 nipype.workflow INFO: [Job 264] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190801-16:05:42,712 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:42,798 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_std_ref". 190801-16:05:42,803 nipype.workflow INFO: [Node] Running "ds_bold_std_ref" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:05:42,898 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref". 190801-16:05:42,898 nipype.workflow INFO: [Job 265] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref). 190801-16:05:42,982 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass". 190801-16:05:42,987 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190801-16:05:44,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190801-16:05:44,712 nipype.workflow INFO: [Job 266] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190801-16:05:44,714 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:44,802 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate". 190801-16:05:44,808 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190801-16:05:45,336 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190801-16:05:46,713 nipype.workflow INFO: [Job 267] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190801-16:05:46,715 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:46,805 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask". 190801-16:05:46,811 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190801-16:05:46,956 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190801-16:05:48,715 nipype.workflow INFO: [Job 268] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190801-16:05:48,718 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:48,807 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize". 190801-16:05:48,813 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190801-16:05:50,492 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190801-16:05:50,718 nipype.workflow INFO: [Job 269] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190801-16:05:50,720 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:50,827 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize". 190801-16:05:50,832 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190801-16:05:50,874 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190801-16:05:52,719 nipype.workflow INFO: [Job 270] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190801-16:05:52,721 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:52,817 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass". 190801-16:05:52,824 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz 190801-16:05:53,48 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190801-16:05:54,720 nipype.workflow INFO: [Job 271] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190801-16:05:54,722 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:54,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2". 190801-16:05:54,816 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190801-16:05:54,837 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190801-16:05:56,722 nipype.workflow INFO: [Job 272] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190801-16:05:56,725 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:56,812 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks". 190801-16:05:56,821 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190801-16:05:56,937 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190801-16:05:58,724 nipype.workflow INFO: [Job 273] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190801-16:05:58,727 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:05:58,823 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask". 190801-16:05:58,828 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz 190801-16:05:58,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190801-16:06:00,726 nipype.workflow INFO: [Job 274] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190801-16:06:00,728 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 162.66/168.76, Free processors: 8/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:06:38,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190801-16:06:38,762 nipype.workflow INFO: [Job 284] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform). 190801-16:06:38,764 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.71/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:06:38,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge". 190801-16:06:38,949 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190801-16:06:40,765 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.33/168.76, Free processors: 15/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:07:18,44 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge". 190801-16:07:18,803 nipype.workflow INFO: [Job 285] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge). 190801-16:07:18,805 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 165.71/168.76, Free processors: 16/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform 190801-16:07:18,890 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_std". 190801-16:07:18,895 nipype.workflow INFO: [Node] Running "ds_bold_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:07:20,945 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform". 190801-16:07:55,312 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std". 190801-16:07:55,312 nipype.workflow INFO: [Job 286] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std). 190801-16:07:55,422 nipype.workflow INFO: [Job 314] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_to_std_transform). 190801-16:07:55,425 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.75/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate 190801-16:07:55,427 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/validate". 190801-16:07:55,432 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190801-16:07:55,451 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190801-16:07:55,608 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNIPediatricAsym/merge". 190801-16:07:55,621 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 190801-16:07:57,425 nipype.workflow INFO: [Job 287] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate). 190801-16:07:57,427 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:07:57,525 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref". 190801-16:07:57,529 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190801-16:07:58,662 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190801-16:07:59,429 nipype.workflow INFO: [Job 288] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref). 190801-16:07:59,431 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:07:59,514 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/calc_dummy_scans". 190801-16:07:59,519 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190801-16:07:59,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans". 190801-16:07:59,524 nipype.workflow INFO: [Job 289] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans). 190801-16:07:59,602 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr". 190801-16:07:59,606 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190801-16:07:59,650 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190801-16:07:59,650 nipype.workflow INFO: [Job 293] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190801-16:08:01,432 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:01,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct". 190801-16:08:01,524 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin6Asym/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190801-16:08:03,433 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.18/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:08,327 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190801-16:08:09,439 nipype.workflow INFO: [Job 294] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190801-16:08:09,441 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:09,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_bold_std_ref". 190801-16:08:09,535 nipype.workflow INFO: [Node] Running "ds_bold_std_ref" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:08:10,58 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref". 190801-16:08:10,58 nipype.workflow INFO: [Job 295] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref). 190801-16:08:10,203 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass". 190801-16:08:10,209 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190801-16:08:11,442 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.18/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:11,551 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190801-16:08:13,442 nipype.workflow INFO: [Job 296] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190801-16:08:13,445 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:13,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate". 190801-16:08:13,537 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190801-16:08:15,447 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.18/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:17,722 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190801-16:08:19,454 nipype.workflow INFO: [Job 297] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190801-16:08:19,456 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:19,549 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask". 190801-16:08:19,557 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190801-16:08:19,755 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190801-16:08:21,457 nipype.workflow INFO: [Job 298] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190801-16:08:21,459 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:21,550 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize". 190801-16:08:21,556 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/unifize/ref_bold_corrected_brain_masked.nii.gz 190801-16:08:23,463 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.18/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:27,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190801-16:08:27,469 nipype.workflow INFO: [Job 299] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190801-16:08:27,471 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:27,599 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize". 190801-16:08:27,607 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190801-16:08:27,707 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190801-16:08:29,471 nipype.workflow INFO: [Job 300] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190801-16:08:29,473 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:29,584 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass". 190801-16:08:29,591 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_second_pass/uni_xform.nii.gz 190801-16:08:29,996 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190801-16:08:31,473 nipype.workflow INFO: [Job 301] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190801-16:08:31,475 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:31,607 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2". 190801-16:08:31,613 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190801-16:08:31,647 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190801-16:08:33,475 nipype.workflow INFO: [Job 302] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190801-16:08:33,477 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:33,604 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks". 190801-16:08:33,611 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190801-16:08:33,743 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190801-16:08:35,478 nipype.workflow INFO: [Job 303] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190801-16:08:35,480 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.38/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge 190801-16:08:35,595 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask". 190801-16:08:35,604 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin6Asym/apply_mask/uni_xform_masked.nii.gz 190801-16:08:35,792 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190801-16:08:37,222 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge". 190801-16:08:37,480 nipype.workflow INFO: [Job 315] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.merge). 190801-16:08:37,481 nipype.workflow INFO: [Job 304] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190801-16:08:37,483 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:08:37,607 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_std". 190801-16:08:37,612 nipype.workflow INFO: [Node] Running "ds_bold_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:09:21,112 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std". 190801-16:09:21,113 nipype.workflow INFO: [Job 316] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std). 190801-16:09:21,257 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.75/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate 190801-16:09:21,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNIPediatricAsym/validate". 190801-16:09:21,367 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 190801-16:09:21,385 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate". 190801-16:09:23,261 nipype.workflow INFO: [Job 317] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.validate). 190801-16:09:23,263 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:09:23,378 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNIPediatricAsym/gen_ref". 190801-16:09:23,383 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 190801-16:09:24,726 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 190801-16:09:25,265 nipype.workflow INFO: [Job 318] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref). 190801-16:09:25,267 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:09:25,381 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNIPediatricAsym/calc_dummy_scans". 190801-16:09:25,386 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 190801-16:09:25,391 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans". 190801-16:09:25,391 nipype.workflow INFO: [Job 319] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans). 190801-16:09:25,496 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/check_hdr". 190801-16:09:25,501 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 190801-16:09:25,550 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 190801-16:09:25,550 nipype.workflow INFO: [Job 323] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 190801-16:09:27,270 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:09:27,383 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/n4_correct". 190801-16:09:27,390 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNIPediatricAsym/gen_ref/ref_bold.nii.gz --mask-image /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz 190801-16:09:29,274 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct 190801-16:09:34,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 190801-16:09:35,282 nipype.workflow INFO: [Job 324] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 190801-16:09:35,284 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:09:35,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.outputnode" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/outputnode". 190801-16:09:35,394 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_bold_std_ref". 190801-16:09:35,399 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 190801-16:09:35,400 nipype.workflow INFO: [Node] Running "ds_bold_std_ref" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:09:35,406 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.outputnode". 190801-16:09:35,713 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref". 190801-16:09:35,713 nipype.workflow INFO: [Job 342] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_bold_std_ref). 190801-16:09:35,814 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass". 190801-16:09:35,821 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/n4_correct/ref_bold_corrected.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 190801-16:09:37,181 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 190801-16:09:37,284 nipype.workflow INFO: [Job 325] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.outputnode). 190801-16:09:37,285 nipype.workflow INFO: [Job 343] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 190801-16:09:37,287 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:09:37,387 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.select_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/select_std". 190801-16:09:37,393 nipype.workflow INFO: [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect") 190801-16:09:37,398 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.select_std". 190801-16:09:37,398 nipype.workflow INFO: [Job 326] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.select_std). 190801-16:09:37,490 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_dilate". 190801-16:09:37,497 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 190801-16:09:39,292 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate 190801-16:09:39,474 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.rm_nonsteady" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/rm_nonsteady". 190801-16:09:39,478 nipype.workflow INFO: [Node] Running "rm_nonsteady" ("nipype.interfaces.utility.wrappers.Function") 190801-16:09:39,483 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.rm_nonsteady". 190801-16:09:41,287 nipype.workflow INFO: [Job 327] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.rm_nonsteady). 190801-16:09:41,290 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate 190801-16:09:41,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/calc_bold_mean". 190801-16:09:41,378 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/calc_median_val". 190801-16:09:41,382 nipype.workflow INFO: [Node] Running "calc_bold_mean" ("nipype.interfaces.fsl.maths.MeanImage"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge/vol0000_xform-00000_merged.nii.gz -Tmean /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/calc_bold_mean/vol0000_xform-00000_merged_mean.nii.gz 190801-16:09:41,384 nipype.workflow INFO: [Node] Running "calc_median_val" ("nipype.interfaces.fsl.utils.ImageStats"), a CommandLine Interface with command: fslstats /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge/vol0000_xform-00000_merged.nii.gz -k /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -p 50 190801-16:09:42,446 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 190801-16:09:43,294 nipype.workflow INFO: [Job 344] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 190801-16:09:43,296 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.36/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean 190801-16:09:43,384 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_mask". 190801-16:09:43,390 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 190801-16:09:43,626 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 190801-16:09:45,300 nipype.workflow INFO: [Job 345] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 190801-16:09:45,302 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.36/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean 190801-16:09:45,392 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/unifize". 190801-16:09:45,399 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/unifize/ref_bold_corrected_brain_masked.nii.gz 190801-16:09:47,305 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 168.16/168.76, Free processors: 21/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean 190801-16:09:50,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean". 190801-16:09:51,312 nipype.workflow INFO: [Job 328] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_bold_mean). 190801-16:09:51,314 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.36/168.76, Free processors: 22/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val 190801-16:09:51,682 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 190801-16:09:53,317 nipype.workflow INFO: [Job 346] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 190801-16:09:53,319 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val 190801-16:09:53,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/fixhdr_unifize". 190801-16:09:53,409 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 190801-16:09:53,515 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 190801-16:09:54,817 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val". 190801-16:09:55,322 nipype.workflow INFO: [Job 329] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.calc_median_val). 190801-16:09:55,322 nipype.workflow INFO: [Job 347] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 190801-16:09:55,324 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:09:55,408 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.getusans" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/getusans". 190801-16:09:55,408 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_second_pass". 190801-16:09:55,413 nipype.workflow INFO: [Node] Running "getusans" ("nipype.interfaces.utility.wrappers.Function") 190801-16:09:55,415 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_second_pass/uni_xform.nii.gz 190801-16:09:55,418 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.getusans". 190801-16:09:55,910 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 190801-16:09:57,326 nipype.workflow INFO: [Job 330] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.getusans). 190801-16:09:57,327 nipype.workflow INFO: [Job 348] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 190801-16:09:57,328 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:09:57,413 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/smooth". 190801-16:09:57,414 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/fixhdr_skullstrip2". 190801-16:09:57,419 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 190801-16:09:57,419 nipype.workflow INFO: [Node] Running "smooth" ("nipype.interfaces.fsl.preprocess.SUSAN"), a CommandLine Interface with command: susan /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/merge/vol0000_xform-00000_merged.nii.gz 295.2587587500 2.5479654009 3 1 1 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/calc_bold_mean/vol0000_xform-00000_merged_mean.nii.gz 393.6783450000 /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/smooth/vol0000_xform-00000_merged_smooth.nii.gz 190801-16:09:57,455 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 190801-16:09:59,327 nipype.workflow INFO: [Job 349] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 190801-16:09:59,330 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth 190801-16:09:59,418 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/combine_masks". 190801-16:09:59,423 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 190801-16:09:59,570 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 190801-16:10:01,330 nipype.workflow INFO: [Job 350] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 190801-16:10:01,332 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth 190801-16:10:01,424 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/apply_mask". 190801-16:10:01,430 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/fixhdr_unifize/uni_xform.nii.gz -mas /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNIPediatricAsym/apply_mask/uni_xform_masked.nii.gz 190801-16:10:01,626 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 190801-16:10:03,333 nipype.workflow INFO: [Job 351] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 190801-16:10:03,335 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth 190801-16:16:18,538 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth". 190801-16:16:19,784 nipype.workflow INFO: [Job 331] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.smooth). 190801-16:16:19,786 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:16:19,870 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.melodic" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/melodic". 190801-16:16:19,879 nipype.workflow INFO: [Node] Running "melodic" ("nipype.interfaces.fsl.model.MELODIC"), a CommandLine Interface with command: melodic -i /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/smooth/vol0000_xform-00000_merged_smooth.nii.gz -d -200 -m /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --mmthresh=0.500000 --nobet -o /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/melodic --Ostats --tr=2.000000 190801-16:16:21,787 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.melodic 190801-16:36:30,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.melodic". 190801-16:36:31,762 nipype.workflow INFO: [Job 332] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.melodic). 190801-16:36:31,764 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:36:31,844 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/ica_aroma". 190801-16:36:31,850 nipype.workflow INFO: [Node] Running "ica_aroma" ("niworkflows.interfaces.segmentation.ICA_AROMARPT"), a CommandLine Interface with command: ICA_AROMA.py -tr 2.000 -den nonaggr -i /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/smooth/vol0000_xform-00000_merged_smooth.nii.gz -m /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_key_MNI152NLin6Asym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -meldir /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/melodic -mc /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/bold_hmc_wf/normalize_motion/motion_params.txt -o /CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/ica_aroma/out 190801-16:36:33,766 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma 190801-16:39:10,811 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma". 190801-16:39:12,9 nipype.workflow INFO: [Job 333] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma). 190801-16:39:12,11 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:39:12,94 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ds_report_ica_aroma" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/ds_report_ica_aroma". 190801-16:39:12,99 nipype.workflow INFO: [Node] Running "ds_report_ica_aroma" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:39:12,105 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ds_report_ica_aroma". 190801-16:39:12,105 nipype.workflow INFO: [Job 334] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ds_report_ica_aroma). 190801-16:39:12,181 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.add_nonsteady" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/add_nonsteady". 190801-16:39:12,188 nipype.workflow INFO: [Node] Running "add_nonsteady" ("nipype.interfaces.utility.wrappers.Function") 190801-16:39:12,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.add_nonsteady". 190801-16:39:12,199 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma_confound_extraction" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ica_aroma_wf/ica_aroma_confound_extraction". 190801-16:39:12,203 nipype.workflow INFO: [Node] Running "ica_aroma_confound_extraction" ("fmriprep.interfaces.confounds.ICAConfounds") 190801-16:39:12,243 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma_confound_extraction". 190801-16:39:14,13 nipype.workflow INFO: [Job 335] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.add_nonsteady). 190801-16:39:14,14 nipype.workflow INFO: [Job 339] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ica_aroma_wf.ica_aroma_confound_extraction). 190801-16:39:14,16 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:39:14,99 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_aroma_std". 190801-16:39:14,105 nipype.workflow INFO: [Node] Running "ds_aroma_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:39:55,435 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std". 190801-16:39:55,435 nipype.workflow INFO: [Job 336] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std). 190801-16:39:55,542 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNI152NLin6Asym/ds_aroma_std". 190801-16:39:55,547 nipype.workflow INFO: [Node] Running "ds_aroma_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:40:36,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std". 190801-16:40:36,892 nipype.workflow INFO: [Job 337] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std). 190801-16:40:36,977 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/_key_MNIPediatricAsym/ds_aroma_std". 190801-16:40:36,982 nipype.workflow INFO: [Node] Running "ds_aroma_std" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:41:18,556 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std". 190801-16:41:18,556 nipype.workflow INFO: [Job 338] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_std). 190801-16:41:18,664 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_melodic_mix" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_melodic_mix". 190801-16:41:18,706 nipype.workflow INFO: [Node] Running "ds_melodic_mix" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:41:18,712 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_melodic_mix". 190801-16:41:18,712 nipype.workflow INFO: [Job 340] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_melodic_mix). 190801-16:41:18,786 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_noise_ics" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_aroma_noise_ics". 190801-16:41:18,791 nipype.workflow INFO: [Node] Running "ds_aroma_noise_ics" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:41:18,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_noise_ics". 190801-16:41:18,797 nipype.workflow INFO: [Job 341] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_aroma_noise_ics). 190801-16:41:18,873 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.56/168.76, Free processors: 23/24. Currently running: * fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.aroma_confounds 190801-16:41:18,945 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.aroma_confounds" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/aroma_confounds". 190801-16:41:18,950 nipype.workflow INFO: [Node] Running "aroma_confounds" ("nipype.interfaces.utility.wrappers.Function") 190801-16:41:18,997 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.aroma_confounds". 190801-16:41:20,878 nipype.workflow INFO: [Job 394] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.aroma_confounds). 190801-16:41:20,880 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:41:21,23 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_confounds" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/func_derivatives_wf/ds_confounds". 190801-16:41:21,176 nipype.workflow INFO: [Node] Running "ds_confounds" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:41:21,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_confounds". 190801-16:41:21,224 nipype.workflow INFO: [Job 395] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.func_derivatives_wf.ds_confounds). 190801-16:41:21,307 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.summary" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/summary". 190801-16:41:21,312 nipype.workflow INFO: [Node] Running "summary" ("fmriprep.interfaces.reports.FunctionalSummary") 190801-16:41:21,319 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.summary". 190801-16:41:21,319 nipype.workflow INFO: [Job 396] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.summary). 190801-16:41:22,884 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.76/168.76, Free processors: 24/24. 190801-16:41:22,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_summary" in "/CALM_BIDS_New_2/derivatives/fmriprepwork_1.4.1.carpetplot/fmriprep_wf/single_subject_001_wf/func_preproc_task_rest_wf/ds_report_summary". 190801-16:41:22,961 nipype.workflow INFO: [Node] Running "ds_report_summary" ("fmriprep.interfaces.DerivativesDataSink") 190801-16:41:22,967 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_summary". 190801-16:41:22,967 nipype.workflow INFO: [Job 397] Completed (fmriprep_wf.single_subject_001_wf.func_preproc_task_rest_wf.ds_report_summary). /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/niworkflows/viz/utils.py:513: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. maximum_intensity_data = data[inds] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] Preprocessing did not finish successfully. Errors occurred while processing data from participants: 001 (1). Check the HTML reports for details.