Captured warning (<class 'DeprecationWarning'>): sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
Making sure the input data is BIDS compliant (warnings can be ignored in most cases).
bids-validator does not appear to be installed
190731-22:53:40,800 nipype.workflow IMPORTANT:
	 
    Running fMRIPREP version 1.4.1:
      * BIDS dataset path: /group/dml/alex/CamCAN_Alex/CamCan.
      * Participant list: ['CC110069'].
      * Run identifier: 20190731-225030_88049fe9-1a98-4f5d-9b5a-aeb2244335ab.
    
190731-22:53:47,449 nipype.workflow IMPORTANT:
	 Creating bold processing workflow for "/group/dml/alex/CamCAN_Alex/CamCan/sub-CC110069/func/sub-CC110069_task-Movie_bold.nii.gz" (0.02 GB / 193 TRs). Memory resampled/largemem=0.10/0.15 GB.
190731-22:53:48,277 nipype.workflow IMPORTANT:
	 No single-band-reference found for sub-CC110069_task-Movie_bold.nii.gz
190731-22:53:52,229 nipype.workflow IMPORTANT:
	 Slice-timing correction will be included.
190731-22:53:55,359 nipype.interface INFO:
	 We advise you to upgrade DIPY version. This upgrade will open access to more function
190731-22:53:55,366 nipype.interface INFO:
	 We advise you to upgrade DIPY version. This upgrade will open access to more function
190731-22:53:55,369 nipype.interface INFO:
	 We advise you to upgrade DIPY version. This upgrade will open access to more models
190731-22:53:56,454 nipype.workflow IMPORTANT:
	 SDC: fieldmap estimation of type "phasediff" intended for /group/dml/alex/CamCAN_Alex/CamCan/sub-CC110069/func/sub-CC110069_task-Movie_bold.nii.gz found.
190731-22:53:59,285 nipype.workflow IMPORTANT:
	 Creating bold processing workflow for "/group/dml/alex/CamCAN_Alex/CamCan/sub-CC110069/func/sub-CC110069_task-Rest_bold.nii.gz" (0.02 GB / 193 TRs). Memory resampled/largemem=0.10/0.15 GB.
190731-22:54:00,118 nipype.workflow IMPORTANT:
	 No single-band-reference found for sub-CC110069_task-Rest_bold.nii.gz
190731-22:54:02,140 nipype.workflow IMPORTANT:
	 Slice-timing correction will be included.
190731-22:54:02,467 nipype.workflow IMPORTANT:
	 SDC: fieldmap estimation of type "phasediff" intended for /group/dml/alex/CamCAN_Alex/CamCan/sub-CC110069/func/sub-CC110069_task-Rest_bold.nii.gz found.
190731-22:54:12,111 nipype.workflow IMPORTANT:
	 Works derived from this fMRIPrep execution should include the following boilerplate:


Results included in this manuscript come from preprocessing
performed using *fMRIPrep* 1.4.1
(@fmriprep1; @fmriprep2; RRID:SCR_016216),
which is based on *Nipype* 1.2.0
(@nipype1; @nipype2; RRID:SCR_002502).

Anatomical data preprocessing

: The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU)
with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.1.0 [@ants, RRID:SCR_004757], and used as T1w-reference throughout the workflow.
The T1w-reference was then skull-stripped with a *Nipype* implementation of
the `antsBrainExtraction.sh` workflow (from ANTs), using OASIS30ANTs
as target template.
Brain tissue segmentation of cerebrospinal fluid (CSF),
white-matter (WM) and gray-matter (GM) was performed on
the brain-extracted T1w using `fast` [FSL 5.0.10, RRID:SCR_002823,
@fsl_fast].
Volume-based spatial normalization to one standard space (MNI152NLin2009cAsym) was performed through
nonlinear registration with `antsRegistration` (ANTs 2.1.0),
using brain-extracted versions of both T1w reference and the T1w template.
The following template was selected for spatial normalization:
*ICBM 152 Nonlinear Asymmetrical template version 2009c* [@mni152nlin2009casym, RRID:SCR_008796; TemplateFlow ID: MNI152NLin2009cAsym].

Functional data preprocessing

: For each of the 2 BOLD runs found per subject (across all
tasks and sessions), the following preprocessing was performed.
First, a reference volume and its skull-stripped version were generated
using a custom methodology of *fMRIPrep*.
A deformation field to correct for susceptibility distortions was estimated
based on a field map that was co-registered to the BOLD reference,
using a custom workflow of *fMRIPrep* derived from D. Greve's `epidewarp.fsl`
[script](http://www.nmr.mgh.harvard.edu/~greve/fbirn/b0/epidewarp.fsl) and
further improvements of HCP Pipelines [@hcppipelines].
Based on the estimated susceptibility distortion, an
unwarped BOLD reference was calculated for a more accurate
co-registration with the anatomical reference.
The BOLD reference was then co-registered to the T1w reference using
`flirt` [FSL 5.0.10, @flirt] with the boundary-based registration [@bbr]
cost-function.
Co-registration was configured with nine degrees of freedom to account
for distortions remaining in the BOLD reference.
Head-motion parameters with respect to the BOLD reference
(transformation matrices, and six corresponding rotation and translation
parameters) are estimated before any spatiotemporal filtering using
`mcflirt` [FSL 5.0.10, @mcflirt].
BOLD runs were slice-time corrected using `3dTshift` from
AFNI 20170110 [@afni, RRID:SCR_005927].
The BOLD time-series (including slice-timing correction when applied)
were resampled onto their original, native space by applying
a single, composite transform to correct for head-motion and
susceptibility distortions.
These resampled BOLD time-series will be referred to as *preprocessed
BOLD in original space*, or just *preprocessed BOLD*.
The BOLD time-series were resampled into standard space,
generating a *preprocessed BOLD run in ['MNI152NLin2009cAsym'] space*.
First, a reference volume and its skull-stripped version were generated
using a custom methodology of *fMRIPrep*.
Several confounding time-series were calculated based on the
*preprocessed BOLD*: framewise displacement (FD), DVARS and
three region-wise global signals.
FD and DVARS are calculated for each functional run, both using their
implementations in *Nipype* [following the definitions by @power_fd_dvars].
The three global signals are extracted within the CSF, the WM, and
the whole-brain masks.
Additionally, a set of physiological regressors were extracted to
allow for component-based noise correction [*CompCor*, @compcor].
Principal components are estimated after high-pass filtering the
*preprocessed BOLD* time-series (using a discrete cosine filter with
128s cut-off) for the two *CompCor* variants: temporal (tCompCor)
and anatomical (aCompCor).
tCompCor components are then calculated from the top 5% variable
voxels within a mask covering the subcortical regions.
This subcortical mask is obtained by heavily eroding the brain mask,
which ensures it does not include cortical GM regions.
For aCompCor, components are calculated within the intersection of
the aforementioned mask and the union of CSF and WM masks calculated
in T1w space, after their projection to the native space of each
functional run (using the inverse BOLD-to-T1w transformation). Components
are also calculated separately within the WM and CSF masks.
For each CompCor decomposition, the *k* components with the largest singular
values are retained, such that the retained components' time series are
sufficient to explain 50 percent of variance across the nuisance mask (CSF,
WM, combined, or temporal). The remaining components are dropped from
consideration.
The head-motion estimates calculated in the correction step were also
placed within the corresponding confounds file.
The confound time series derived from head motion estimates and global
signals were expanded with the inclusion of temporal derivatives and
quadratic terms for each [@confounds_satterthwaite_2013].
Frames that exceeded a threshold of 0.5 mm FD or 1.5 standardised DVARS
were annotated as motion outliers.
All resamplings can be performed with *a single interpolation
step* by composing all the pertinent transformations (i.e. head-motion
transform matrices, susceptibility distortion correction when available,
and co-registrations to anatomical and output spaces).
Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs),
configured with Lanczos interpolation to minimize the smoothing
effects of other kernels [@lanczos].
Non-gridded (surface) resamplings were performed using `mri_vol2surf`
(FreeSurfer).


Many internal operations of *fMRIPrep* use
*Nilearn* 0.5.2 [@nilearn, RRID:SCR_001362],
mostly within the functional processing workflow.
For more details of the pipeline, see [the section corresponding
to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation").


### References


pandoc: Filter pandoc-citeproc not found
190731-22:54:12,209 nipype.workflow WARNING:
	 Could not generate CITATION.html file:
pandoc -s --bibliography /home/wbreilly/.local/lib/python3.6/site-packages/fmriprep/data/boilerplate.bib --filter pandoc-citeproc --metadata pagetitle="fMRIPrep citation boilerplate" /home/wbreilly/wbr_can_CamCan/output4/fmriprep/logs/CITATION.md -o /home/wbreilly/wbr_can_CamCan/output4/fmriprep/logs/CITATION.html
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
/home/wbreilly/.local/lib/python3.6/site-packages/bids/layout/layout.py:62: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['suffix'] instead of .suffix.
  % (attr, attr))
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
190731-22:54:23,572 nipype.workflow INFO:
	 Workflow fmriprep_wf settings: ['check', 'execution', 'logging', 'monitoring']
190731-22:54:23,972 nipype.workflow INFO:
	 Running in parallel.
190731-22:54:23,987 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:54:24,100 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_specs" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_specs".
190731-22:54:24,231 nipype.workflow INFO:
	 [Node] Running "tpl_specs" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:24,251 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_specs".
190731-22:54:24,251 nipype.workflow INFO:
	 [Job 0] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_specs).
190731-22:54:25,842 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.pha2rads" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/pha2rads".
190731-22:54:25,846 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.raw_sources" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/func_derivatives_wf/raw_sources".
190731-22:54:25,848 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.pha2rads" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/pha2rads".
190731-22:54:25,848 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.raw_sources" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/func_derivatives_wf/raw_sources".
190731-22:54:25,904 nipype.workflow INFO:
	 [Node] Running "pha2rads" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:25,911 nipype.workflow INFO:
	 [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:25,940 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.raw_sources".
190731-22:54:25,944 nipype.workflow INFO:
	 [Node] Running "pha2rads" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:25,946 nipype.workflow INFO:
	 [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:25,961 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.raw_sources".
190731-22:54:25,988 nipype.workflow INFO:
	 [Job 3] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.raw_sources).
190731-22:54:25,991 nipype.workflow INFO:
	 [Job 98] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.raw_sources).
190731-22:54:25,997 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 8 jobs ready. Free memory (GB): 7.97/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.magmrg
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.pha2rads
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.validate
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.magmrg
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.pha2rads
190731-22:54:26,35 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.pha2rads".
190731-22:54:26,61 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.pha2rads".
190731-22:54:26,128 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.msk_select" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/msk_select".
190731-22:54:26,166 nipype.workflow INFO:
	 [Node] Running "msk_select" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:26,186 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.msk_select".
190731-22:54:26,186 nipype.workflow INFO:
	 [Job 1] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.msk_select).
190731-22:54:26,317 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_select" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_select".
190731-22:54:26,341 nipype.workflow INFO:
	 [Node] Running "tpl_select" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:26,357 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_select".
190731-22:54:26,357 nipype.workflow INFO:
	 [Job 2] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_select).
190731-22:54:27,604 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/meta".
190731-22:54:27,618 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.magmrg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/magmrg".
190731-22:54:27,647 nipype.workflow INFO:
	 [Node] Running "magmrg" ("niworkflows.interfaces.images.IntraModalMerge")
190731-22:54:27,655 nipype.workflow INFO:
	 [Node] Running "meta" ("niworkflows.interfaces.bids.ReadSidecarJSON")
190731-22:54:27,657 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/validate".
190731-22:54:27,675 nipype.workflow INFO:
	 [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
190731-22:54:27,701 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.magmrg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/magmrg".
190731-22:54:27,745 nipype.workflow INFO:
	 [Node] Running "magmrg" ("niworkflows.interfaces.images.IntraModalMerge")
190731-22:54:27,990 nipype.workflow INFO:
	 [Job 4] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.pha2rads).
190731-22:54:27,992 nipype.workflow INFO:
	 [Job 99] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.pha2rads).
190731-22:54:27,998 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 4 jobs ready. Free memory (GB): 8.35/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.validate
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.magmrg
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.validate
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.magmrg
190731-22:54:28,693 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/validate".
190731-22:54:28,699 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/meta".
190731-22:54:28,708 nipype.workflow INFO:
	 [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
190731-22:54:28,729 nipype.workflow INFO:
	 [Node] Running "meta" ("niworkflows.interfaces.bids.ReadSidecarJSON")
190731-22:54:28,862 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.magmrg".
190731-22:54:28,991 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.magmrg".
190731-22:54:29,700 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.validate".
190731-22:54:29,992 nipype.workflow INFO:
	 [Job 5] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.magmrg).
190731-22:54:29,994 nipype.workflow INFO:
	 [Job 21] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.validate).
190731-22:54:29,996 nipype.workflow INFO:
	 [Job 100] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.magmrg).
190731-22:54:30,3 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 6 jobs ready. Free memory (GB): 8.36/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.validate
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:30,144 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.ds_report_validation" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/ds_report_validation".
190731-22:54:30,179 nipype.workflow INFO:
	 [Node] Running "ds_report_validation" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:54:30,226 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.ds_report_validation".
190731-22:54:30,226 nipype.workflow INFO:
	 [Job 22] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.ds_report_validation).
190731-22:54:30,229 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl".
190731-22:54:30,267 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl".
190731-22:54:30,501 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref".
190731-22:54:30,501 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.about" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/about".
190731-22:54:30,507 nipype.workflow INFO:
	 [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/wbreilly/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1
190731-22:54:30,508 nipype.workflow INFO:
	 [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /home/wbreilly/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1
190731-22:54:30,519 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.validate".
190731-22:54:30,527 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
190731-22:54:30,528 nipype.workflow INFO:
	 [Node] Running "about" ("fmriprep.interfaces.reports.AboutSummary")
190731-22:54:30,546 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.about".
190731-22:54:30,546 nipype.workflow INFO:
	 [Job 196] Completed (fmriprep_wf.single_subject_CC110069_wf.about).
190731-22:54:30,725 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.bidssrc" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/bidssrc".
190731-22:54:30,781 nipype.workflow INFO:
	 [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber")
190731-22:54:30,783 nipype.interface WARNING:
	 No "flair" images found for sub-<undefined>
190731-22:54:30,783 nipype.interface WARNING:
	 No "sbref" images found for sub-<undefined>
190731-22:54:30,783 nipype.interface WARNING:
	 No "roi" images found for sub-<undefined>
190731-22:54:30,795 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.bidssrc".
190731-22:54:30,976 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.975943:++ 3dvolreg: AFNI version=AFNI_17.1.10 (Jun  6 2017) [64-bit]
190731-22:54:30,976 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.975943:++ Authored by: RW Cox
190731-22:54:30,976 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.976829:** AFNI converts NIFTI_datatype=512 (UINT16) in file /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32
190731-22:54:30,976 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.976829:     Warnings of this type will be muted for this session.
190731-22:54:30,977 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.976829:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
190731-22:54:30,978 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.978435:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
190731-22:54:30,978 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.978435:  such as /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref/slice.nii.gz,
190731-22:54:30,978 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.978435:  or viewing/combining it with volumes of differing obliquity,
190731-22:54:30,978 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.978435:  you should consider running: 
190731-22:54:30,978 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.978435:     3dWarp -deoblique 
190731-22:54:30,978 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.978435:  on this and  other oblique datasets in the same session.
190731-22:54:30,979 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.978435: See 3dWarp -help for details.
190731-22:54:30,979 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.978435:++ Oblique dataset:/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref/slice.nii.gz is 31.610607 degrees from plumb.
190731-22:54:30,979 nipype.interface INFO:
	 stderr 2019-07-31T22:54:30.979208:++ Coarse del was 10, replaced with 3
190731-22:54:31,993 nipype.workflow INFO:
	 [Job 116] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.validate).
190731-22:54:31,995 nipype.workflow INFO:
	 [Job 197] Completed (fmriprep_wf.single_subject_CC110069_wf.bidssrc).
190731-22:54:32,1 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 7 jobs ready. Free memory (GB): 7.37/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:32,153 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.ds_report_validation" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/ds_report_validation".
190731-22:54:32,235 nipype.workflow INFO:
	 [Node] Running "ds_report_validation" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:54:32,250 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.ds_report_validation".
190731-22:54:32,250 nipype.workflow INFO:
	 [Job 117] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.ds_report_validation).
190731-22:54:32,410 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref".
190731-22:54:32,413 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions".
190731-22:54:32,417 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.ds_report_about" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/ds_report_about".
190731-22:54:32,420 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
190731-22:54:32,447 nipype.workflow INFO:
	 [Node] Running "ds_report_about" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:54:32,453 nipype.workflow INFO:
	 [Node] Running "t1_template_dimensions" ("niworkflows.interfaces.images.TemplateDimensions")
190731-22:54:32,481 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.ds_report_about".
190731-22:54:32,481 nipype.workflow INFO:
	 [Job 492] Completed (fmriprep_wf.single_subject_CC110069_wf.ds_report_about).
190731-22:54:32,614 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.bids_info" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/bids_info".
190731-22:54:32,627 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl".
190731-22:54:32,651 nipype.workflow INFO:
	 [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo")
190731-22:54:32,707 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions".
190731-22:54:32,958 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.957994:++ 3dvolreg: AFNI version=AFNI_17.1.10 (Jun  6 2017) [64-bit]
190731-22:54:32,958 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.958461:++ Authored by: RW Cox
190731-22:54:32,959 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.959647:** AFNI converts NIFTI_datatype=512 (UINT16) in file /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32
190731-22:54:32,959 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.959647:     Warnings of this type will be muted for this session.
190731-22:54:32,959 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.959647:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
190731-22:54:32,961 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.961784:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
190731-22:54:32,961 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.961784:  such as /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref/slice.nii.gz,
190731-22:54:32,962 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.961784:  or viewing/combining it with volumes of differing obliquity,
190731-22:54:32,962 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.961784:  you should consider running: 
190731-22:54:32,962 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.961784:     3dWarp -deoblique 
190731-22:54:32,962 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.961784:  on this and  other oblique datasets in the same session.
190731-22:54:32,962 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.961784: See 3dWarp -help for details.
190731-22:54:32,962 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.961784:++ Oblique dataset:/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref/slice.nii.gz is 31.610607 degrees from plumb.
190731-22:54:32,962 nipype.interface INFO:
	 stderr 2019-07-31T22:54:32.962586:++ Coarse del was 10, replaced with 3
190731-22:54:33,995 nipype.workflow INFO:
	 [Job 195] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl).
190731-22:54:33,997 nipype.workflow INFO:
	 [Job 198] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions).
190731-22:54:34,3 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 7 jobs ready. Free memory (GB): 6.37/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:34,188 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_reports_wf/ds_t1_conform_report".
190731-22:54:34,313 nipype.workflow INFO:
	 [Node] Running "ds_t1_conform_report" ("smriprep.interfaces.DerivativesDataSink")
190731-22:54:34,328 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report".
190731-22:54:34,329 nipype.workflow INFO:
	 [Job 199] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report).
190731-22:54:34,505 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_transforms".
190731-22:54:34,563 nipype.workflow INFO:
	 [Node] Setting-up "_ds_t1_template_transforms0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_transforms/mapflow/_ds_t1_template_transforms0".
190731-22:54:34,576 nipype.workflow INFO:
	 [Node] Running "_ds_t1_template_transforms0" ("smriprep.interfaces.DerivativesDataSink")
190731-22:54:34,614 nipype.workflow INFO:
	 [Node] Finished "_ds_t1_template_transforms0".
190731-22:54:34,622 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms".
190731-22:54:34,622 nipype.workflow INFO:
	 [Job 200] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms).
190731-22:54:34,802 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources".
190731-22:54:34,819 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/t1_name".
190731-22:54:34,824 nipype.workflow INFO:
	 [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:34,837 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources".
190731-22:54:34,870 nipype.workflow INFO:
	 [Node] Running "t1_name" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:34,883 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.t1_name".
190731-22:54:35,995 nipype.workflow INFO:
	 [Job 201] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources).
190731-22:54:35,997 nipype.workflow INFO:
	 [Job 202] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.t1_name).
190731-22:54:36,3 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 6.37/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:36,212 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.t1_conform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_template_wf/t1_conform".
190731-22:54:36,311 nipype.workflow INFO:
	 [Node] Setting-up "_t1_conform0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0".
190731-22:54:36,376 nipype.workflow INFO:
	 [Node] Running "_t1_conform0" ("niworkflows.interfaces.images.Conform")
190731-22:54:38,0 nipype.workflow INFO:
	 [MultiProc] Running 7 tasks, and 2 jobs ready. Free memory (GB): 6.17/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.t1_conform
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:38,137 nipype.workflow INFO:
	 [Node] Finished "_t1_conform0".
190731-22:54:38,144 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.t1_conform".
190731-22:54:39,704 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl".
190731-22:54:39,997 nipype.workflow INFO:
	 [Job 193] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl).
190731-22:54:39,999 nipype.workflow INFO:
	 [Job 203] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.t1_conform).
190731-22:54:40,3 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 6.57/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:40,127 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl".
190731-22:54:40,130 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.get1st" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_template_wf/get1st".
190731-22:54:40,165 nipype.workflow INFO:
	 [Node] Running "get1st" ("nipype.interfaces.utility.base.Select")
190731-22:54:40,171 nipype.workflow INFO:
	 [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge")
190731-22:54:40,181 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.get1st".
190731-22:54:40,184 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl".
190731-22:54:41,997 nipype.workflow INFO:
	 [Job 194] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl).
190731-22:54:41,999 nipype.workflow INFO:
	 [Job 204] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_template_wf.get1st).
190731-22:54:42,4 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 6.57/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:42,146 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_validate".
190731-22:54:42,172 nipype.workflow INFO:
	 [Node] Running "anat_validate" ("niworkflows.interfaces.images.ValidateImage")
190731-22:54:43,484 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_validate".
190731-22:54:43,484 nipype.workflow INFO:
	 [Job 205] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_validate).
190731-22:54:44,1 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 3 jobs ready. Free memory (GB): 6.57/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:44,147 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/truncate_images".
190731-22:54:44,193 nipype.workflow INFO:
	 [Node] Setting-up "_truncate_images0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0".
190731-22:54:44,248 nipype.workflow INFO:
	 [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_maths.nii.gz TruncateImageIntensity /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_validate/sub-CC110069_T1w_ras_valid.nii.gz 0.01 0.999 256
190731-22:54:46,4 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 6.37/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.truncate_images
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:48,731 nipype.interface INFO:
	 stderr 2019-07-31T22:54:48.731503:++ Max displacement in automask = 0.52 (mm) at sub-brick 17
190731-22:54:48,731 nipype.interface INFO:
	 stderr 2019-07-31T22:54:48.731503:++ Max delta displ  in automask = 0.39 (mm) at sub-brick 1
190731-22:54:49,844 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref".
190731-22:54:50,3 nipype.workflow INFO:
	 [Job 23] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.gen_ref).
190731-22:54:50,8 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 7.37/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.truncate_images
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:50,204 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_hmc_wf/mcflirt".
190731-22:54:50,205 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.calc_dummy_scans" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/calc_dummy_scans".
190731-22:54:50,260 nipype.workflow INFO:
	 [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:50,264 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/validate/sub-CC110069_task-Movie_bold_valid.nii.gz -out /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_hmc_wf/mcflirt/sub-CC110069_task-Movie_bold_valid_mcf.nii.gz -reffile /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
190731-22:54:50,270 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.calc_dummy_scans".
190731-22:54:50,271 nipype.workflow INFO:
	 [Job 71] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.calc_dummy_scans).
190731-22:54:50,298 nipype.workflow INFO:
	 [Node] Finished "_truncate_images0".
190731-22:54:50,305 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.truncate_images".
190731-22:54:51,208 nipype.interface INFO:
	 stderr 2019-07-31T22:54:51.208162:++ Max displacement in automask = 0.52 (mm) at sub-brick 17
190731-22:54:51,208 nipype.interface INFO:
	 stderr 2019-07-31T22:54:51.208162:++ Max delta displ  in automask = 0.39 (mm) at sub-brick 1
190731-22:54:52,6 nipype.workflow INFO:
	 [Job 206] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.truncate_images).
190731-22:54:52,13 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 7.50/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:52,153 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.slice_timing_correction" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_stc_wf/slice_timing_correction".
190731-22:54:52,174 nipype.workflow INFO:
	 [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 0 -prefix sub-CC110069_task-Movie_bold_valid_tshift.nii.gz -tpattern @slice_timing.1D -TR 2.47s /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_stc_wf/slice_timing_correction/sub-CC110069_task-Movie_bold_valid.nii.gz
190731-22:54:52,278 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref".
190731-22:54:54,8 nipype.workflow INFO:
	 [Job 118] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.gen_ref).
190731-22:54:54,14 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 7 jobs ready. Free memory (GB): 8.30/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.slice_timing_correction
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:54,160 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_hmc_wf/mcflirt".
190731-22:54:54,161 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.calc_dummy_scans" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/calc_dummy_scans".
190731-22:54:54,197 nipype.workflow INFO:
	 [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function")
190731-22:54:54,199 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/validate/sub-CC110069_task-Rest_bold_valid.nii.gz -out /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_hmc_wf/mcflirt/sub-CC110069_task-Rest_bold_valid_mcf.nii.gz -reffile /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
190731-22:54:54,211 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.calc_dummy_scans".
190731-22:54:54,211 nipype.workflow INFO:
	 [Job 166] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.calc_dummy_scans).
190731-22:54:56,11 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 8.22/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.slice_timing_correction
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:54:56,180 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.slice_timing_correction" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_stc_wf/slice_timing_correction".
190731-22:54:56,315 nipype.workflow INFO:
	 [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 0 -prefix sub-CC110069_task-Rest_bold_valid_tshift.nii.gz -tpattern @slice_timing.1D -TR 1.97s /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_stc_wf/slice_timing_correction/sub-CC110069_task-Rest_bold_valid.nii.gz
190731-22:54:58,13 nipype.workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 8.02/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.slice_timing_correction
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.slice_timing_correction
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:03,838 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.slice_timing_correction".
190731-22:55:04,14 nipype.workflow INFO:
	 [Job 72] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.slice_timing_correction).
190731-22:55:04,20 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 8.22/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.slice_timing_correction
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:04,168 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.copy_xform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_stc_wf/copy_xform".
190731-22:55:04,196 nipype.workflow INFO:
	 [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
190731-22:55:06,20 nipype.workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 8.12/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.copy_xform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.slice_timing_correction
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:07,144 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.slice_timing_correction".
190731-22:55:08,16 nipype.workflow INFO:
	 [Job 167] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.slice_timing_correction).
190731-22:55:08,22 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 8.32/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.copy_xform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:08,244 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.copy_xform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_stc_wf/copy_xform".
190731-22:55:08,282 nipype.workflow INFO:
	 [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
190731-22:55:10,23 nipype.workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 8.22/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.copy_xform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.copy_xform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:12,883 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.copy_xform".
190731-22:55:14,22 nipype.workflow INFO:
	 [Job 73] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_stc_wf.copy_xform).
190731-22:55:14,28 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 8.32/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.copy_xform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:14,187 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_split" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_split".
190731-22:55:14,202 nipype.workflow INFO:
	 [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_stc_wf/copy_xform/sub-CC110069_task-Movie_bold_valid_tshift_xform.nii.gz -t
190731-22:55:16,27 nipype.workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 8.25/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_split
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.copy_xform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:16,345 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.copy_xform".
190731-22:55:18,23 nipype.workflow INFO:
	 [Job 168] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_stc_wf.copy_xform).
190731-22:55:18,28 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 8.35/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_split
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:18,176 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_split" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_split".
190731-22:55:18,218 nipype.workflow INFO:
	 [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_stc_wf/copy_xform/sub-CC110069_task-Rest_bold_valid_tshift_xform.nii.gz -t
190731-22:55:20,27 nipype.workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 8.27/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_split
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_split
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:24,758 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_split".
190731-22:55:26,30 nipype.workflow INFO:
	 [Job 74] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_split).
190731-22:55:26,35 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 5 jobs ready. Free memory (GB): 8.35/8.79, Free processors: 2/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_split
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:28,71 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_split".
190731-22:55:30,32 nipype.workflow INFO:
	 [Job 169] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_split).
190731-22:55:30,38 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 5 jobs ready. Free memory (GB): 8.42/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:35,0 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt".
190731-22:55:36,37 nipype.workflow INFO:
	 [Job 24] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.mcflirt).
190731-22:55:36,42 nipype.workflow INFO:
	 [MultiProc] Running 4 tasks, and 7 jobs ready. Free memory (GB): 8.50/8.79, Free processors: 4/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:36,176 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.normalize_motion" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_hmc_wf/normalize_motion".
190731-22:55:36,297 nipype.workflow INFO:
	 [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
190731-22:55:36,314 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.normalize_motion".
190731-22:55:38,40 nipype.workflow INFO:
	 [Job 25] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.normalize_motion).
190731-22:55:38,46 nipype.workflow INFO:
	 [MultiProc] Running 4 tasks, and 8 jobs ready. Free memory (GB): 8.50/8.79, Free processors: 4/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:38,193 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_motion_headers" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/add_motion_headers".
190731-22:55:38,225 nipype.workflow INFO:
	 [Node] Running "add_motion_headers" ("niworkflows.interfaces.utils.AddTSVHeader")
190731-22:55:38,244 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_motion_headers".
190731-22:55:38,244 nipype.workflow INFO:
	 [Job 26] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_motion_headers).
190731-22:55:38,369 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.fdisp" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/fdisp".
190731-22:55:38,391 nipype.workflow INFO:
	 [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
190731-22:55:38,498 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.fdisp".
190731-22:55:38,921 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt".
190731-22:55:40,41 nipype.workflow INFO:
	 [Job 119] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.mcflirt).
190731-22:55:40,44 nipype.workflow INFO:
	 [Job 27] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.fdisp).
190731-22:55:40,51 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 8 jobs ready. Free memory (GB): 8.57/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:40,188 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.normalize_motion" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_hmc_wf/normalize_motion".
190731-22:55:40,268 nipype.workflow INFO:
	 [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
190731-22:55:40,287 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.normalize_motion".
190731-22:55:42,41 nipype.workflow INFO:
	 [Job 120] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.normalize_motion).
190731-22:55:42,46 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 9 jobs ready. Free memory (GB): 8.57/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:55:42,180 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_motion_headers" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/add_motion_headers".
190731-22:55:42,210 nipype.workflow INFO:
	 [Node] Running "add_motion_headers" ("niworkflows.interfaces.utils.AddTSVHeader")
190731-22:55:42,226 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_motion_headers".
190731-22:55:42,226 nipype.workflow INFO:
	 [Job 121] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_motion_headers).
190731-22:55:42,349 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.fdisp" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/fdisp".
190731-22:55:42,384 nipype.workflow INFO:
	 [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
190731-22:55:42,400 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.fdisp".
190731-22:55:44,45 nipype.workflow INFO:
	 [Job 122] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.fdisp).
190731-22:55:44,53 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 7 jobs ready. Free memory (GB): 8.57/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.bids_info
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta
190731-22:56:09,80 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.bids_info".
190731-22:56:09,960 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta".
190731-22:56:09,965 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta".
190731-22:56:10,67 nipype.workflow INFO:
	 [Job 19] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.meta).
190731-22:56:10,70 nipype.workflow INFO:
	 [Job 114] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.meta).
190731-22:56:10,73 nipype.workflow INFO:
	 [Job 493] Completed (fmriprep_wf.single_subject_CC110069_wf.bids_info).
190731-22:56:10,80 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 8 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:56:10,259 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.n4" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/n4".
190731-22:56:10,264 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.summary" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/summary".
190731-22:56:10,331 nipype.workflow INFO:
	 [Node] Running "summary" ("fmriprep.interfaces.reports.SubjectSummary")
190731-22:56:10,332 nipype.workflow INFO:
	 [Node] Running "n4" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/magmrg/sub-CC110069_run-01_magnitude1_avg.nii.gz --output sub-CC110069_run-01_magnitude1_avg_corrected.nii.gz
190731-22:56:10,350 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.summary".
190731-22:56:10,350 nipype.workflow INFO:
	 [Job 494] Completed (fmriprep_wf.single_subject_CC110069_wf.summary).
190731-22:56:11,874 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.n4".
190731-22:56:12,69 nipype.workflow INFO:
	 [Job 6] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.n4).
190731-22:56:12,77 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 8 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:56:12,257 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.bet" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet".
190731-22:56:12,318 nipype.workflow INFO:
	 [Node] Running "bet" ("niworkflows.interfaces.masks.BETRPT"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/n4/sub-CC110069_run-01_magnitude1_avg_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-01_magnitude1_avg_corrected_brain.nii.gz -f 0.60 -m
190731-22:56:12,343 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_hmc_wf/fsl2itk".
190731-22:56:12,371 nipype.workflow INFO:
	 [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
190731-22:56:14,69 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 8.54/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.bet
190731-22:56:19,552 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.bet".
190731-22:56:20,73 nipype.workflow INFO:
	 [Job 7] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.bet).
190731-22:56:20,77 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk
190731-22:56:20,217 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fieldmap_fov_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fieldmap_fov_mask".
190731-22:56:20,233 nipype.workflow INFO:
	 [Node] Running "fieldmap_fov_mask" ("niworkflows.interfaces.images.FilledImageLike")
190731-22:56:20,264 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fieldmap_fov_mask".
190731-22:56:22,80 nipype.workflow INFO:
	 [Job 8] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fieldmap_fov_mask).
190731-22:56:22,90 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk
190731-22:56:22,236 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.MskErode" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/MskErode".
190731-22:56:22,268 nipype.workflow INFO:
	 [Node] Running "MskErode" ("nipype.interfaces.fsl.maths.MathsCommand"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask.nii.gz -nan -kernel 2D -ero /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/MskErode/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_maths.nii.gz
190731-22:56:22,534 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.MskErode".
190731-22:56:24,79 nipype.workflow INFO:
	 [Job 9] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.MskErode).
190731-22:56:24,85 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk
190731-22:56:24,242 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.NewMask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/NewMask".
190731-22:56:24,306 nipype.workflow INFO:
	 [Node] Running "NewMask" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask.nii.gz -sub /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/MskErode/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_maths.nii.gz -thr 0.5 -bin /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/NewMask/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_maths.nii.gz
190731-22:56:25,340 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.NewMask".
190731-22:56:26,83 nipype.workflow INFO:
	 [Job 10] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.NewMask).
190731-22:56:26,93 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk
190731-22:56:26,239 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.ds_report_fmap_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/ds_report_fmap_mask".
190731-22:56:26,249 nipype.workflow INFO:
	 [Node] Running "ds_report_fmap_mask" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:56:26,288 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.ds_report_fmap_mask".
190731-22:56:26,288 nipype.workflow INFO:
	 [Job 11] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.ds_report_fmap_mask).
190731-22:56:26,442 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.prelude" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/prelude".
190731-22:56:26,502 nipype.workflow INFO:
	 [Node] Running "prelude" ("nipype.interfaces.fsl.preprocess.PRELUDE"), a CommandLine Interface with command:
prelude --abs=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/n4/sub-CC110069_run-01_magnitude1_avg_corrected.nii.gz --mask=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask.nii.gz --phase=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/pha2rads/sub-CC110069_run-01_phasediff_rads.nii.gz --unwrap=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/prelude/sub-CC110069_run-01_phasediff_rads_unwrapped.nii.gz
190731-22:56:27,652 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.prelude".
190731-22:56:28,81 nipype.workflow INFO:
	 [Job 12] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.prelude).
190731-22:56:28,85 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk
190731-22:56:28,229 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.denoise" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/denoise".
190731-22:56:28,242 nipype.workflow INFO:
	 [Node] Running "denoise" ("nipype.interfaces.fsl.maths.SpatialFilter"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/prelude/sub-CC110069_run-01_phasediff_rads_unwrapped.nii.gz -kernel sphere 3.0000 -fmedian /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/denoise/sub-CC110069_run-01_phasediff_rads_unwrapped_filt.nii.gz
190731-22:56:29,302 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.denoise".
190731-22:56:29,564 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk".
190731-22:56:30,85 nipype.workflow INFO:
	 [Job 28] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_hmc_wf.fsl2itk).
190731-22:56:30,88 nipype.workflow INFO:
	 [Job 13] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.denoise).
190731-22:56:30,96 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:56:30,280 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.demean" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/demean".
190731-22:56:30,287 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
190731-22:56:30,291 nipype.workflow INFO:
	 [Node] Running "demean" ("nipype.interfaces.utility.wrappers.Function")
190731-22:56:30,301 nipype.workflow INFO:
	 [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
190731-22:56:30,352 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.demean".
190731-22:56:32,83 nipype.workflow INFO:
	 [Job 14] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.demean).
190731-22:56:32,88 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff
190731-22:56:32,212 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.Despike" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/Despike".
190731-22:56:32,286 nipype.workflow INFO:
	 [Node] Running "Despike" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command:
fugue --despike --despikethreshold=2.1 --loadfmap=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/demean/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean.nii.gz --savefmap=sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_fieldmap.nii.gz --mask=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask.nii.gz
190731-22:56:32,560 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.Despike".
190731-22:56:34,85 nipype.workflow INFO:
	 [Job 15] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.Despike).
190731-22:56:34,91 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff
190731-22:56:34,227 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.ApplyMask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/ApplyMask".
190731-22:56:34,270 nipype.workflow INFO:
	 [Node] Running "ApplyMask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/Despike/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_fieldmap.nii.gz -nan -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/NewMask/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/ApplyMask/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_fieldmap_masked.nii.gz
190731-22:56:34,399 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.ApplyMask".
190731-22:56:34,734 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
190731-22:56:36,89 nipype.workflow INFO:
	 [Job 29] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff).
190731-22:56:36,93 nipype.workflow INFO:
	 [Job 16] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.ApplyMask).
190731-22:56:36,100 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:56:36,278 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.Merge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/Merge".
190731-22:56:36,293 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
190731-22:56:36,315 nipype.workflow INFO:
	 [Node] Running "Merge" ("nipype.interfaces.utility.base.Merge")
190731-22:56:36,321 nipype.workflow INFO:
	 [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
190731-22:56:36,331 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.Merge".
190731-22:56:37,845 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
190731-22:56:38,91 nipype.workflow INFO:
	 [Job 17] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.Merge).
190731-22:56:38,94 nipype.workflow INFO:
	 [Job 30] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm).
190731-22:56:38,102 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:56:38,282 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.AddEdge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/AddEdge".
190731-22:56:38,288 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
190731-22:56:38,292 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.ds_report_summary" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/ds_report_summary".
190731-22:56:38,319 nipype.workflow INFO:
	 [Node] Running "AddEdge" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/demean/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/MskErode/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_maths.nii.gz -add /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/ApplyMask/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_fieldmap_masked.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/cleanup_wf/AddEdge/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_maths.nii.gz
190731-22:56:38,326 nipype.workflow INFO:
	 [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
190731-22:56:38,361 nipype.workflow INFO:
	 [Node] Running "ds_report_summary" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:56:38,374 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.ds_report_summary".
190731-22:56:38,374 nipype.workflow INFO:
	 [Job 495] Completed (fmriprep_wf.single_subject_CC110069_wf.ds_report_summary).
190731-22:56:38,472 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.AddEdge".
190731-22:56:40,93 nipype.workflow INFO:
	 [Job 18] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.cleanup_wf.AddEdge).
190731-22:56:40,100 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask
190731-22:56:40,629 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.compfmap" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/compfmap".
190731-22:56:40,646 nipype.workflow INFO:
	 [Node] Running "compfmap" ("fmriprep.interfaces.fmap.Phasediff2Fieldmap")
190731-22:56:40,695 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.compfmap".
190731-22:56:40,836 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
190731-22:56:42,95 nipype.workflow INFO:
	 [Job 31] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
190731-22:56:42,98 nipype.workflow INFO:
	 [Job 20] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.phdiff_wf.compfmap).
190731-22:56:42,106 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:56:42,291 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
190731-22:56:42,297 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.n4" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/n4".
190731-22:56:42,318 nipype.workflow INFO:
	 [Node] Running "n4" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/magmrg/sub-CC110069_run-02_magnitude1_avg.nii.gz --output sub-CC110069_run-02_magnitude1_avg_corrected.nii.gz
190731-22:56:42,332 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
190731-22:56:42,558 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190731-22:56:43,676 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.n4".
190731-22:56:44,97 nipype.workflow INFO:
	 [Job 32] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190731-22:56:44,100 nipype.workflow INFO:
	 [Job 101] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.n4).
190731-22:56:44,107 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:56:44,284 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr".
190731-22:56:44,301 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190731-22:56:44,354 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190731-22:56:44,354 nipype.workflow INFO:
	 [Job 33] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190731-22:56:44,531 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.bet" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet".
190731-22:56:44,583 nipype.workflow INFO:
	 [Node] Running "bet" ("niworkflows.interfaces.masks.BETRPT"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/n4/sub-CC110069_run-02_magnitude1_avg_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-02_magnitude1_avg_corrected_brain.nii.gz -f 0.60 -m
190731-22:56:44,624 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_hmc_wf/fsl2itk".
190731-22:56:44,666 nipype.workflow INFO:
	 [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
190731-22:56:46,97 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 8.54/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.bet
190731-22:56:51,916 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.bet".
190731-22:56:52,101 nipype.workflow INFO:
	 [Job 102] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.bet).
190731-22:56:52,104 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk
190731-22:56:52,249 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
190731-22:56:52,280 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz
190731-22:56:53,324 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190731-22:56:54,103 nipype.workflow INFO:
	 [Job 34] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190731-22:56:54,110 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk
190731-22:56:54,257 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.get_ees" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/get_ees".
190731-22:56:54,287 nipype.workflow INFO:
	 [Node] Running "get_ees" ("nipype.interfaces.utility.wrappers.Function")
190731-22:56:54,453 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.get_ees".
190731-22:56:56,106 nipype.workflow INFO:
	 [Job 35] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.get_ees).
190731-22:56:56,114 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk
190731-22:56:56,291 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
190731-22:56:56,330 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
190731-22:56:57,834 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190731-22:56:58,108 nipype.workflow INFO:
	 [Job 36] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190731-22:56:58,116 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk
190731-22:56:58,265 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
190731-22:56:58,327 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
190731-22:56:58,693 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190731-22:57:00,107 nipype.workflow INFO:
	 [Job 37] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190731-22:57:00,111 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 8.74/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk
190731-22:57:00,277 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
190731-22:57:00,345 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
190731-22:57:00,489 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190731-22:57:02,14 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk".
190731-22:57:02,111 nipype.workflow INFO:
	 [Job 123] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_hmc_wf.fsl2itk).
190731-22:57:02,115 nipype.workflow INFO:
	 [Job 38] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190731-22:57:02,122 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:57:02,308 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
190731-22:57:02,315 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.MskErode" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/MskErode".
190731-22:57:02,316 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fieldmap_fov_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fieldmap_fov_mask".
190731-22:57:02,318 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.ds_report_fmap_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/ds_report_fmap_mask".
190731-22:57:02,352 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
190731-22:57:02,377 nipype.workflow INFO:
	 [Node] Running "MskErode" ("nipype.interfaces.fsl.maths.MathsCommand"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask.nii.gz -nan -kernel 2D -ero /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/MskErode/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_maths.nii.gz
190731-22:57:02,381 nipype.workflow INFO:
	 [Node] Running "fieldmap_fov_mask" ("niworkflows.interfaces.images.FilledImageLike")
190731-22:57:02,388 nipype.workflow INFO:
	 [Node] Running "ds_report_fmap_mask" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:57:02,409 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.ds_report_fmap_mask".
190731-22:57:02,409 nipype.workflow INFO:
	 [Job 106] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.ds_report_fmap_mask).
190731-22:57:02,421 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fieldmap_fov_mask".
190731-22:57:02,621 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.prelude" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/prelude".
190731-22:57:02,639 nipype.workflow INFO:
	 [Node] Running "prelude" ("nipype.interfaces.fsl.preprocess.PRELUDE"), a CommandLine Interface with command:
prelude --abs=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/n4/sub-CC110069_run-02_magnitude1_avg_corrected.nii.gz --mask=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask.nii.gz --phase=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/pha2rads/sub-CC110069_run-02_phasediff_rads.nii.gz --unwrap=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/prelude/sub-CC110069_run-02_phasediff_rads_unwrapped.nii.gz
190731-22:57:02,691 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.MskErode".
190731-22:57:03,69 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.prelude".
190731-22:57:04,112 nipype.workflow INFO:
	 [Job 103] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fieldmap_fov_mask).
190731-22:57:04,114 nipype.workflow INFO:
	 [Job 104] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.MskErode).
190731-22:57:04,116 nipype.workflow INFO:
	 [Job 107] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.prelude).
190731-22:57:04,138 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:57:04,432 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.NewMask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/NewMask".
190731-22:57:04,435 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.denoise" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/denoise".
190731-22:57:04,449 nipype.workflow INFO:
	 [Node] Running "NewMask" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask.nii.gz -sub /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/MskErode/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_maths.nii.gz -thr 0.5 -bin /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/NewMask/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_maths.nii.gz
190731-22:57:04,452 nipype.workflow INFO:
	 [Node] Running "denoise" ("nipype.interfaces.fsl.maths.SpatialFilter"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/prelude/sub-CC110069_run-02_phasediff_rads_unwrapped.nii.gz -kernel sphere 3.0000 -fmedian /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/denoise/sub-CC110069_run-02_phasediff_rads_unwrapped_filt.nii.gz
190731-22:57:04,777 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.NewMask".
190731-22:57:05,39 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.denoise".
190731-22:57:06,112 nipype.workflow INFO:
	 [Job 105] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.NewMask).
190731-22:57:06,114 nipype.workflow INFO:
	 [Job 108] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.denoise).
190731-22:57:06,120 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:57:06,397 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.demean" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/demean".
190731-22:57:06,425 nipype.workflow INFO:
	 [Node] Running "demean" ("nipype.interfaces.utility.wrappers.Function")
190731-22:57:06,498 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.demean".
190731-22:57:08,114 nipype.workflow INFO:
	 [Job 109] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.demean).
190731-22:57:08,120 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:57:08,417 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.Despike" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/Despike".
190731-22:57:08,480 nipype.workflow INFO:
	 [Node] Running "Despike" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command:
fugue --despike --despikethreshold=2.1 --loadfmap=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/demean/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean.nii.gz --savefmap=sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_fieldmap.nii.gz --mask=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask.nii.gz
190731-22:57:09,219 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.Despike".
190731-22:57:10,116 nipype.workflow INFO:
	 [Job 110] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.Despike).
190731-22:57:10,122 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:57:10,393 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.ApplyMask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/ApplyMask".
190731-22:57:10,440 nipype.workflow INFO:
	 [Node] Running "ApplyMask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/Despike/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_fieldmap.nii.gz -nan -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/NewMask/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/ApplyMask/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_fieldmap_masked.nii.gz
190731-22:57:10,767 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.ApplyMask".
190731-22:57:12,116 nipype.workflow INFO:
	 [Job 111] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.ApplyMask).
190731-22:57:12,122 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:57:12,439 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.Merge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/Merge".
190731-22:57:12,451 nipype.workflow INFO:
	 [Node] Running "Merge" ("nipype.interfaces.utility.base.Merge")
190731-22:57:12,465 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.Merge".
190731-22:57:14,118 nipype.workflow INFO:
	 [Job 112] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.Merge).
190731-22:57:14,124 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:57:14,317 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.AddEdge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/AddEdge".
190731-22:57:14,529 nipype.workflow INFO:
	 [Node] Running "AddEdge" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/demean/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/MskErode/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_maths.nii.gz -add /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/ApplyMask/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_fieldmap_masked.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/cleanup_wf/AddEdge/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_maths.nii.gz
190731-22:57:14,684 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.AddEdge".
190731-22:57:16,120 nipype.workflow INFO:
	 [Job 113] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.cleanup_wf.AddEdge).
190731-22:57:16,126 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:57:16,279 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.compfmap" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/compfmap".
190731-22:57:16,294 nipype.workflow INFO:
	 [Node] Running "compfmap" ("fmriprep.interfaces.fmap.Phasediff2Fieldmap")
190731-22:57:16,335 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.compfmap".
190731-22:57:17,112 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
190731-22:57:18,123 nipype.workflow INFO:
	 [Job 39] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
190731-22:57:18,126 nipype.workflow INFO:
	 [Job 115] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.phdiff_wf.compfmap).
190731-22:57:18,134 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:57:18,313 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
190731-22:57:18,324 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
190731-22:57:18,382 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190731-22:57:18,383 nipype.workflow INFO:
	 [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
190731-22:57:18,461 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190731-22:57:20,123 nipype.workflow INFO:
	 [Job 40] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190731-22:57:20,129 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff
190731-22:57:20,281 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
190731-22:57:20,296 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
190731-22:57:20,493 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190731-22:57:22,124 nipype.workflow INFO:
	 [Job 41] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190731-22:57:22,130 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff
190731-22:57:22,264 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
190731-22:57:22,281 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190731-22:57:22,314 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190731-22:57:22,859 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
190731-22:57:24,127 nipype.workflow INFO:
	 [Job 124] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff).
190731-22:57:24,130 nipype.workflow INFO:
	 [Job 42] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190731-22:57:24,138 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:57:24,319 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
190731-22:57:24,331 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
190731-22:57:24,380 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
190731-22:57:24,383 nipype.workflow INFO:
	 [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
190731-22:57:24,574 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190731-22:57:25,780 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
190731-22:57:26,129 nipype.workflow INFO:
	 [Job 43] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190731-22:57:26,132 nipype.workflow INFO:
	 [Job 125] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm).
190731-22:57:26,140 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:57:26,318 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
190731-22:57:26,324 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
190731-22:57:26,373 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
190731-22:57:26,389 nipype.workflow INFO:
	 [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
190731-22:57:26,535 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190731-22:57:28,131 nipype.workflow INFO:
	 [Job 44] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190731-22:57:28,138 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask
190731-22:57:28,307 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_reg".
190731-22:57:28,380 nipype.workflow INFO:
	 [Node] Running "fmap2ref_reg" ("niworkflows.interfaces.registration.ANTSRegistrationRPT"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz, transform_InverseWarped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-01_magnitude1_avg_corrected_brain.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Affine[ 0.01 ] --metric Mattes[ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-01_magnitude1_avg_corrected_brain.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
190731-22:57:28,802 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
190731-22:57:30,131 nipype.workflow INFO:
	 [Job 126] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
190731-22:57:30,137 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:30,260 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
190731-22:57:30,287 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
190731-22:57:30,463 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190731-22:57:32,130 nipype.workflow INFO:
	 [Job 127] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190731-22:57:32,134 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:32,286 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr".
190731-22:57:32,298 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190731-22:57:32,338 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190731-22:57:32,338 nipype.workflow INFO:
	 [Job 128] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190731-22:57:34,137 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:34,287 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
190731-22:57:34,331 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz
190731-22:57:35,900 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190731-22:57:36,136 nipype.workflow INFO:
	 [Job 129] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190731-22:57:36,142 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:36,295 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.get_ees" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/get_ees".
190731-22:57:36,341 nipype.workflow INFO:
	 [Node] Running "get_ees" ("nipype.interfaces.utility.wrappers.Function")
190731-22:57:36,506 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.get_ees".
190731-22:57:38,135 nipype.workflow INFO:
	 [Job 130] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.get_ees).
190731-22:57:38,141 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:38,294 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
190731-22:57:38,328 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
190731-22:57:40,140 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:40,157 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190731-22:57:42,143 nipype.workflow INFO:
	 [Job 131] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190731-22:57:42,150 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:42,315 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
190731-22:57:42,332 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
190731-22:57:42,679 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190731-22:57:44,145 nipype.workflow INFO:
	 [Job 132] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190731-22:57:44,152 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:44,317 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
190731-22:57:44,407 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
190731-22:57:44,560 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190731-22:57:46,146 nipype.workflow INFO:
	 [Job 133] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190731-22:57:46,154 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:46,316 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
190731-22:57:46,356 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
190731-22:57:48,151 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:57:52,617 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg".
190731-22:57:54,152 nipype.workflow INFO:
	 [Job 45] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg).
190731-22:57:54,158 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:57:54,465 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap_fov2ref_apply" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap_fov2ref_apply".
190731-22:57:54,469 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.ds_report_reg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/ds_report_reg".
190731-22:57:54,494 nipype.workflow INFO:
	 [Node] Running "fmap_fov2ref_apply" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fieldmap_fov_mask/filled.nii.gz --interpolation NearestNeighbor --output filled_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_reg/transformComposite.h5
190731-22:57:54,505 nipype.workflow INFO:
	 [Node] Running "ds_report_reg" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:57:54,523 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.ds_report_reg".
190731-22:57:54,523 nipype.workflow INFO:
	 [Job 47] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.ds_report_reg).
190731-22:57:54,838 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap_mask2ref_apply" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap_mask2ref_apply".
190731-22:57:54,871 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_apply".
190731-22:57:54,880 nipype.workflow INFO:
	 [Node] Running "fmap_mask2ref_apply" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask.nii.gz --interpolation MultiLabel --output sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_reg/transformComposite.h5
190731-22:57:54,897 nipype.workflow INFO:
	 [Node] Running "fmap2ref_apply" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/phdiff_wf/compfmap/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_maths_fmap.nii.gz --interpolation BSpline --output sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_reg/transformComposite.h5
190731-22:57:55,378 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap_fov2ref_apply".
190731-22:57:56,153 nipype.workflow INFO:
	 [Job 46] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap_fov2ref_apply).
190731-22:57:56,160 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 8.19/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap_mask2ref_apply
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:58:00,344 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap_mask2ref_apply".
190731-22:58:02,158 nipype.workflow INFO:
	 [Job 48] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap_mask2ref_apply).
190731-22:58:02,164 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:58:02,325 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
190731-22:58:02,388 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap_mask2ref_apply/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_trans_dil.nii.gz
190731-22:58:02,610 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190731-22:58:04,47 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
190731-22:58:04,161 nipype.workflow INFO:
	 [Job 134] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
190731-22:58:04,164 nipype.workflow INFO:
	 [Job 49] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190731-22:58:04,171 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply
190731-22:58:04,331 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
190731-22:58:04,363 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190731-22:58:04,435 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190731-22:58:06,163 nipype.workflow INFO:
	 [Job 135] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190731-22:58:06,171 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply
190731-22:58:06,334 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
190731-22:58:06,361 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
190731-22:58:06,619 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190731-22:58:07,676 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply".
190731-22:58:08,165 nipype.workflow INFO:
	 [Job 50] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply).
190731-22:58:08,168 nipype.workflow INFO:
	 [Job 136] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190731-22:58:08,176 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:58:08,360 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.ds_report_vsm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/ds_report_vsm".
190731-22:58:08,378 nipype.workflow INFO:
	 [Node] Running "ds_report_vsm" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:58:08,396 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.ds_report_vsm".
190731-22:58:08,396 nipype.workflow INFO:
	 [Job 70] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.ds_report_vsm).
190731-22:58:08,552 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
190731-22:58:08,584 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190731-22:58:08,622 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190731-22:58:08,640 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.torads" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/torads".
190731-22:58:08,679 nipype.workflow INFO:
	 [Node] Running "torads" ("fmriprep.interfaces.fmap.FieldToRadS")
190731-22:58:08,777 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.torads".
190731-22:58:10,167 nipype.workflow INFO:
	 [Job 51] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.torads).
190731-22:58:10,170 nipype.workflow INFO:
	 [Job 137] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190731-22:58:10,177 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:58:10,361 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.gen_vsm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/gen_vsm".
190731-22:58:10,365 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
190731-22:58:10,449 nipype.workflow INFO:
	 [Node] Running "gen_vsm" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command:
fugue --dwell=0.0001693122 --loadfmap=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/torads/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans_rad.nii.gz --mask=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap_mask2ref_apply/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_trans.nii.gz --unmaskshift --saveshift=sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans_rad_vsm_unmasked.nii.gz --unwarpdir=y-
190731-22:58:10,467 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
190731-22:58:10,623 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190731-22:58:10,728 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.gen_vsm".
190731-22:58:12,169 nipype.workflow INFO:
	 [Job 52] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.gen_vsm).
190731-22:58:12,172 nipype.workflow INFO:
	 [Job 138] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190731-22:58:12,179 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:58:12,364 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.demean" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/demean".
190731-22:58:12,371 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
190731-22:58:12,377 nipype.workflow INFO:
	 [Node] Running "demean" ("niworkflows.interfaces.images.DemeanImage")
190731-22:58:12,439 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
190731-22:58:12,449 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.demean".
190731-22:58:12,610 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190731-22:58:14,171 nipype.workflow INFO:
	 [Job 53] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.demean).
190731-22:58:14,174 nipype.workflow INFO:
	 [Job 139] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190731-22:58:14,181 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:58:14,363 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.vsm2dfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/vsm2dfm".
190731-22:58:14,376 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_reg".
190731-22:58:14,397 nipype.workflow INFO:
	 [Node] Running "vsm2dfm" ("niworkflows.interfaces.itk.FUGUEvsm2ANTSwarp")
190731-22:58:14,407 nipype.workflow INFO:
	 [Node] Running "fmap2ref_reg" ("niworkflows.interfaces.registration.ANTSRegistrationRPT"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz, transform_InverseWarped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-02_magnitude1_avg_corrected_brain.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Affine[ 0.01 ] --metric Mattes[ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-02_magnitude1_avg_corrected_brain.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
190731-22:58:14,468 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.vsm2dfm".
190731-22:58:16,171 nipype.workflow INFO:
	 [Job 54] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.vsm2dfm).
190731-22:58:16,176 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:16,301 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge_xforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/merge_xforms".
190731-22:58:16,336 nipype.workflow INFO:
	 [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge")
190731-22:58:16,349 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge_xforms".
190731-22:58:16,349 nipype.workflow INFO:
	 [Job 55] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge_xforms).
190731-22:58:16,475 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.jac_dfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/jac_dfm".
190731-22:58:16,590 nipype.workflow INFO:
	 [Node] Running "jac_dfm" ("nipype.interfaces.ants.utils.CreateJacobianDeterminantImage"), a CommandLine Interface with command:
CreateJacobianDeterminantImage 3 /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/vsm2dfm/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans_rad_vsm_unmasked_demeaned_antswarp.nii.gz jacobian.nii.gz
190731-22:58:16,820 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.jac_dfm".
190731-22:58:18,171 nipype.workflow INFO:
	 [Job 56] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.jac_dfm).
190731-22:58:18,177 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:18,329 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.unwarp_reference" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/unwarp_reference".
190731-22:58:18,342 nipype.workflow INFO:
	 [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/vsm2dfm/sub-CC110069_run-01_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans_rad_vsm_unmasked_demeaned_antswarp.nii.gz
190731-22:58:20,178 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.unwarp_reference
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:20,333 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.unwarp_reference".
190731-22:58:22,174 nipype.workflow INFO:
	 [Job 57] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.unwarp_reference).
190731-22:58:22,178 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:22,330 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.apply_fov_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/apply_fov_mask".
190731-22:58:22,365 nipype.workflow INFO:
	 [Node] Running "apply_fov_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/fmap_fov2ref_apply/filled_trans.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/apply_fov_mask/ref_bold_corrected_trans_masked.nii.gz
190731-22:58:22,540 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.apply_fov_mask".
190731-22:58:24,178 nipype.workflow INFO:
	 [Job 58] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.apply_fov_mask).
190731-22:58:24,184 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:24,338 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr".
190731-22:58:24,382 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190731-22:58:24,423 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190731-22:58:24,423 nipype.workflow INFO:
	 [Job 59] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190731-22:58:26,183 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:26,324 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct".
190731-22:58:26,338 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/apply_fov_mask/ref_bold_corrected_trans_masked.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/sub-CC110069_run-01_magnitude1_avg_corrected_brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_masked_corrected.nii.gz
190731-22:58:27,588 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190731-22:58:28,182 nipype.workflow INFO:
	 [Job 60] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190731-22:58:28,190 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:28,352 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
190731-22:58:28,382 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_masked_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_masked_corrected_brain.nii.gz -f 0.20 -m
190731-22:58:29,885 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190731-22:58:30,185 nipype.workflow INFO:
	 [Job 61] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190731-22:58:30,192 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:30,347 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
190731-22:58:30,398 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_masked_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_masked_corrected_brain_mask_dil.nii.gz
190731-22:58:30,731 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190731-22:58:32,186 nipype.workflow INFO:
	 [Job 62] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190731-22:58:32,193 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:32,324 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
190731-22:58:32,412 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_masked_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_masked_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_masked_corrected_brain_masked.nii.gz
190731-22:58:32,588 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190731-22:58:34,188 nipype.workflow INFO:
	 [Job 63] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190731-22:58:34,196 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:34,354 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize".
190731-22:58:34,392 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_masked_corrected_brain_masked.nii.gz
190731-22:58:36,192 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg
190731-22:58:37,711 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg".
190731-22:58:38,190 nipype.workflow INFO:
	 [Job 140] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_reg).
190731-22:58:38,196 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:58:38,556 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_transform".
190731-22:58:38,583 nipype.workflow INFO:
	 [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
190731-22:58:40,195 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize
190731-22:58:55,430 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize".
190731-22:58:56,206 nipype.workflow INFO:
	 [Job 64] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize).
190731-22:58:56,212 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:58:56,359 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
190731-22:58:56,370 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190731-22:58:56,554 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190731-22:58:58,208 nipype.workflow INFO:
	 [Job 65] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190731-22:58:58,214 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:58:58,359 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
190731-22:58:58,392 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
190731-22:58:58,620 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190731-22:59:00,210 nipype.workflow INFO:
	 [Job 66] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190731-22:59:00,215 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:00,374 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
190731-22:59:00,432 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190731-22:59:00,473 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190731-22:59:02,211 nipype.workflow INFO:
	 [Job 67] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190731-22:59:02,217 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:02,346 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks".
190731-22:59:02,383 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_masked_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_masked_corrected_brain_mask_maths.nii.gz
190731-22:59:02,496 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190731-22:59:04,212 nipype.workflow INFO:
	 [Job 68] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190731-22:59:04,218 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:04,365 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask".
190731-22:59:04,414 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_masked_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
190731-22:59:04,579 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190731-22:59:06,214 nipype.workflow INFO:
	 [Job 69] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190731-22:59:06,220 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:06,373 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap_fov2ref_apply" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap_fov2ref_apply".
190731-22:59:06,403 nipype.workflow INFO:
	 [Node] Running "fmap_fov2ref_apply" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fieldmap_fov_mask/filled.nii.gz --interpolation NearestNeighbor --output filled_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_reg/transformComposite.h5
190731-22:59:06,756 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap_fov2ref_apply".
190731-22:59:08,216 nipype.workflow INFO:
	 [Job 141] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap_fov2ref_apply).
190731-22:59:08,222 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:08,384 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.ds_report_reg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/ds_report_reg".
190731-22:59:08,401 nipype.workflow INFO:
	 [Node] Running "ds_report_reg" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:59:08,417 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.ds_report_reg".
190731-22:59:08,418 nipype.workflow INFO:
	 [Job 142] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.ds_report_reg).
190731-22:59:08,569 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap_mask2ref_apply" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap_mask2ref_apply".
190731-22:59:08,585 nipype.workflow INFO:
	 [Node] Running "fmap_mask2ref_apply" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/bet/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask.nii.gz --interpolation MultiLabel --output sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_reg/transformComposite.h5
190731-22:59:10,220 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap_mask2ref_apply
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:12,125 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap_mask2ref_apply".
190731-22:59:12,216 nipype.workflow INFO:
	 [Job 143] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap_mask2ref_apply).
190731-22:59:12,220 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:12,349 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
190731-22:59:12,434 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap_mask2ref_apply/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_trans_dil.nii.gz
190731-22:59:12,700 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190731-22:59:14,220 nipype.workflow INFO:
	 [Job 144] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190731-22:59:14,226 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:14,381 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_apply".
190731-22:59:14,444 nipype.workflow INFO:
	 [Node] Running "fmap2ref_apply" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/phdiff_wf/compfmap/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_maths_fmap.nii.gz --interpolation BSpline --output sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap2ref_reg/transformComposite.h5
190731-22:59:16,225 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:28,998 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply".
190731-22:59:30,236 nipype.workflow INFO:
	 [Job 145] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.fmap2ref_apply).
190731-22:59:30,242 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:30,690 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.torads" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/torads".
190731-22:59:30,719 nipype.workflow INFO:
	 [Node] Running "torads" ("fmriprep.interfaces.fmap.FieldToRadS")
190731-22:59:30,787 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.torads".
190731-22:59:32,236 nipype.workflow INFO:
	 [Job 146] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.torads).
190731-22:59:32,239 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:32,386 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.gen_vsm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/gen_vsm".
190731-22:59:32,420 nipype.workflow INFO:
	 [Node] Running "gen_vsm" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command:
fugue --dwell=0.0005100042 --loadfmap=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/torads/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans_rad.nii.gz --mask=/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap_mask2ref_apply/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_trans.nii.gz --unmaskshift --saveshift=sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans_rad_vsm_unmasked.nii.gz --unwarpdir=y-
190731-22:59:32,709 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.gen_vsm".
190731-22:59:34,240 nipype.workflow INFO:
	 [Job 147] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.gen_vsm).
190731-22:59:34,245 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:34,400 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.demean" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/demean".
190731-22:59:34,428 nipype.workflow INFO:
	 [Node] Running "demean" ("niworkflows.interfaces.images.DemeanImage")
190731-22:59:34,472 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.demean".
190731-22:59:36,242 nipype.workflow INFO:
	 [Job 148] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.demean).
190731-22:59:36,248 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:36,395 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.vsm2dfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/vsm2dfm".
190731-22:59:36,464 nipype.workflow INFO:
	 [Node] Running "vsm2dfm" ("niworkflows.interfaces.itk.FUGUEvsm2ANTSwarp")
190731-22:59:36,515 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.vsm2dfm".
190731-22:59:38,244 nipype.workflow INFO:
	 [Job 149] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.vsm2dfm).
190731-22:59:38,249 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:38,398 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge_xforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/merge_xforms".
190731-22:59:38,448 nipype.workflow INFO:
	 [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge")
190731-22:59:38,461 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge_xforms".
190731-22:59:38,461 nipype.workflow INFO:
	 [Job 150] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge_xforms).
190731-22:59:38,611 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.jac_dfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/jac_dfm".
190731-22:59:38,669 nipype.workflow INFO:
	 [Node] Running "jac_dfm" ("nipype.interfaces.ants.utils.CreateJacobianDeterminantImage"), a CommandLine Interface with command:
CreateJacobianDeterminantImage 3 /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/vsm2dfm/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans_rad_vsm_unmasked_demeaned_antswarp.nii.gz jacobian.nii.gz
190731-22:59:38,957 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.jac_dfm".
190731-22:59:40,244 nipype.workflow INFO:
	 [Job 151] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.jac_dfm).
190731-22:59:40,250 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:40,408 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.unwarp_reference" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/unwarp_reference".
190731-22:59:40,464 nipype.workflow INFO:
	 [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/vsm2dfm/sub-CC110069_run-02_phasediff_rads_unwrapped_filt_demean_maths_fmap_trans_rad_vsm_unmasked_demeaned_antswarp.nii.gz
190731-22:59:42,249 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.unwarp_reference
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:42,327 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.unwarp_reference".
190731-22:59:44,250 nipype.workflow INFO:
	 [Job 152] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.unwarp_reference).
190731-22:59:44,259 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:44,421 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.apply_fov_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/apply_fov_mask".
190731-22:59:44,434 nipype.workflow INFO:
	 [Node] Running "apply_fov_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/fmap_fov2ref_apply/filled_trans.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/apply_fov_mask/ref_bold_corrected_trans_masked.nii.gz
190731-22:59:44,613 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.apply_fov_mask".
190731-22:59:46,249 nipype.workflow INFO:
	 [Job 153] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.apply_fov_mask).
190731-22:59:46,254 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:46,387 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr".
190731-22:59:46,418 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190731-22:59:46,466 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190731-22:59:46,467 nipype.workflow INFO:
	 [Job 154] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190731-22:59:46,611 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.ds_report_vsm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/ds_report_vsm".
190731-22:59:46,652 nipype.workflow INFO:
	 [Node] Running "ds_report_vsm" ("fmriprep.interfaces.DerivativesDataSink")
190731-22:59:46,676 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.ds_report_vsm".
190731-22:59:46,676 nipype.workflow INFO:
	 [Job 165] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.ds_report_vsm).
190731-22:59:48,254 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:48,419 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct".
190731-22:59:48,475 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/apply_fov_mask/ref_bold_corrected_trans_masked.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/sub-CC110069_run-02_magnitude1_avg_corrected_brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_masked_corrected.nii.gz
190731-22:59:49,898 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190731-22:59:50,252 nipype.workflow INFO:
	 [Job 155] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190731-22:59:50,257 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:50,406 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
190731-22:59:50,489 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_masked_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_masked_corrected_brain.nii.gz -f 0.20 -m
190731-22:59:52,57 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190731-22:59:52,253 nipype.workflow INFO:
	 [Job 156] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190731-22:59:52,260 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform
190731-22:59:52,419 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
190731-22:59:52,458 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_masked_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_masked_corrected_brain_mask_dil.nii.gz
190731-22:59:52,819 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190731-22:59:53,581 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform".
190731-22:59:54,257 nipype.workflow INFO:
	 [Job 75] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_transform).
190731-22:59:54,260 nipype.workflow INFO:
	 [Job 157] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190731-22:59:54,268 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-22:59:54,480 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
190731-22:59:54,481 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/merge".
190731-22:59:54,507 nipype.workflow INFO:
	 [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
190731-22:59:54,509 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_masked_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_masked_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_masked_corrected_brain_masked.nii.gz
190731-22:59:54,672 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190731-22:59:56,256 nipype.workflow INFO:
	 [Job 158] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190731-22:59:56,261 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge
190731-22:59:56,433 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize".
190731-22:59:56,453 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_masked_corrected_brain_masked.nii.gz
190731-22:59:58,262 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 8.29/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge
190731-23:00:12,899 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize".
190731-23:00:14,271 nipype.workflow INFO:
	 [Job 159] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize).
190731-23:00:14,279 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge
190731-23:00:14,294 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge".
190731-23:00:14,447 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
190731-23:00:14,487 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190731-23:00:14,574 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190731-23:00:16,273 nipype.workflow INFO:
	 [Job 76] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.merge).
190731-23:00:16,276 nipype.workflow INFO:
	 [Job 160] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190731-23:00:16,283 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:00:16,465 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/validate".
190731-23:00:16,471 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
190731-23:00:16,532 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
190731-23:00:16,547 nipype.workflow INFO:
	 [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
190731-23:00:16,810 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190731-23:00:18,274 nipype.workflow INFO:
	 [Job 161] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190731-23:00:18,282 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.78/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.validate
190731-23:00:18,442 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
190731-23:00:18,483 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190731-23:00:18,543 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190731-23:00:20,276 nipype.workflow INFO:
	 [Job 162] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190731-23:00:20,284 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.78/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.validate
190731-23:00:20,444 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks".
190731-23:00:20,457 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_masked_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_masked_corrected_brain_mask_maths.nii.gz
190731-23:00:20,593 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190731-23:00:21,718 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.validate".
190731-23:00:22,279 nipype.workflow INFO:
	 [Job 77] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.validate).
190731-23:00:22,282 nipype.workflow INFO:
	 [Job 163] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190731-23:00:22,289 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:00:22,471 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref".
190731-23:00:22,475 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask".
190731-23:00:22,521 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
190731-23:00:22,522 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_masked_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
190731-23:00:22,684 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190731-23:00:23,720 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.720469:++ 3dvolreg: AFNI version=AFNI_17.1.10 (Jun  6 2017) [64-bit]
190731-23:00:23,720 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.720469:++ Authored by: RW Cox
190731-23:00:23,724 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.724546:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
190731-23:00:23,724 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.724546:  such as /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz,
190731-23:00:23,724 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.724546:  or viewing/combining it with volumes of differing obliquity,
190731-23:00:23,724 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.724546:  you should consider running: 
190731-23:00:23,724 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.724546:     3dWarp -deoblique 
190731-23:00:23,724 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.724546:  on this and  other oblique datasets in the same session.
190731-23:00:23,724 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.724546: See 3dWarp -help for details.
190731-23:00:23,725 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.724546:++ Oblique dataset:/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 31.610607 degrees from plumb.
190731-23:00:23,725 nipype.interface INFO:
	 stderr 2019-07-31T23:00:23.725091:++ Coarse del was 10, replaced with 3
190731-23:00:24,280 nipype.workflow INFO:
	 [Job 164] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.sdc_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190731-23:00:24,288 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref
190731-23:00:24,542 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_transform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_transform".
190731-23:00:24,606 nipype.workflow INFO:
	 [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
190731-23:00:26,283 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 5.72/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_transform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref
190731-23:00:47,331 nipype.interface INFO:
	 stderr 2019-07-31T23:00:47.331260:++ Max displacement in automask = 0.21 (mm) at sub-brick 2
190731-23:00:47,331 nipype.interface INFO:
	 stderr 2019-07-31T23:00:47.331260:++ Max delta displ  in automask = 0.19 (mm) at sub-brick 3
190731-23:00:48,477 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref".
190731-23:00:50,302 nipype.workflow INFO:
	 [Job 78] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref).
190731-23:00:50,308 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_transform
190731-23:00:50,454 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/calc_dummy_scans".
190731-23:00:50,467 nipype.workflow INFO:
	 [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function")
190731-23:00:50,480 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans".
190731-23:00:50,480 nipype.workflow INFO:
	 [Job 97] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans).
190731-23:00:52,305 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_transform
190731-23:01:32,144 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_transform".
190731-23:01:32,337 nipype.workflow INFO:
	 [Job 170] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_transform).
190731-23:01:32,345 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:01:32,527 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
190731-23:01:32,551 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/merge".
190731-23:01:32,572 nipype.workflow INFO:
	 [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
190731-23:01:32,582 nipype.workflow INFO:
	 [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
190731-23:01:34,340 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.29/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff
190731-23:01:36,962 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
190731-23:01:38,341 nipype.workflow INFO:
	 [Job 79] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff).
190731-23:01:38,349 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge
190731-23:01:38,538 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
190731-23:01:38,575 nipype.workflow INFO:
	 [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
190731-23:01:39,854 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
190731-23:01:40,340 nipype.workflow INFO:
	 [Job 80] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm).
190731-23:01:40,343 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge
190731-23:01:40,486 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
190731-23:01:40,519 nipype.workflow INFO:
	 [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
190731-23:01:42,349 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.29/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge
190731-23:01:43,67 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
190731-23:01:44,346 nipype.workflow INFO:
	 [Job 81] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
190731-23:01:44,354 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge
190731-23:01:44,513 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
190731-23:01:44,568 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
190731-23:01:44,768 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190731-23:01:46,178 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge".
190731-23:01:46,349 nipype.workflow INFO:
	 [Job 171] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.merge).
190731-23:01:46,352 nipype.workflow INFO:
	 [Job 82] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190731-23:01:46,359 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:01:46,541 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr".
190731-23:01:46,595 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190731-23:01:46,660 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190731-23:01:46,660 nipype.workflow INFO:
	 [Job 83] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190731-23:01:46,836 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4".
190731-23:01:46,837 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/validate".
190731-23:01:46,898 nipype.workflow INFO:
	 [Node] Setting-up "_inu_n40" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40".
190731-23:01:46,905 nipype.workflow INFO:
	 [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
190731-23:01:46,925 nipype.workflow INFO:
	 [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-CC110069_T1w_ras_valid_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-CC110069_T1w_ras_valid_maths_corrected.nii.gz --shrink-factor 4
190731-23:01:48,350 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.58/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.validate
190731-23:01:52,622 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.validate".
190731-23:01:54,355 nipype.workflow INFO:
	 [Job 172] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.validate).
190731-23:01:54,361 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:01:54,519 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
190731-23:01:54,547 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz
190731-23:01:55,848 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190731-23:01:56,360 nipype.workflow INFO:
	 [Job 84] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190731-23:01:56,371 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:01:56,521 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
190731-23:01:56,567 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
190731-23:01:58,347 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190731-23:01:58,356 nipype.workflow INFO:
	 [Job 85] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190731-23:01:58,359 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:01:58,507 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
190731-23:01:58,564 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
190731-23:01:58,926 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190731-23:02:00,364 nipype.workflow INFO:
	 [Job 86] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190731-23:02:00,376 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:00,544 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
190731-23:02:00,601 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
190731-23:02:00,775 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190731-23:02:02,363 nipype.workflow INFO:
	 [Job 87] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190731-23:02:02,370 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:02,536 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
190731-23:02:02,552 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
190731-23:02:04,367 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:19,970 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
190731-23:02:20,376 nipype.workflow INFO:
	 [Job 88] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
190731-23:02:20,379 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:20,501 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
190731-23:02:20,537 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190731-23:02:20,607 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190731-23:02:22,380 nipype.workflow INFO:
	 [Job 89] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190731-23:02:22,384 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:22,539 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
190731-23:02:22,578 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
190731-23:02:22,816 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190731-23:02:24,381 nipype.workflow INFO:
	 [Job 90] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190731-23:02:24,389 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:24,554 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
190731-23:02:24,773 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190731-23:02:24,818 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190731-23:02:26,385 nipype.workflow INFO:
	 [Job 91] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190731-23:02:26,391 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:26,536 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
190731-23:02:26,604 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
190731-23:02:26,763 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190731-23:02:28,387 nipype.workflow INFO:
	 [Job 92] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190731-23:02:28,396 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:28,606 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.dvars" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/dvars".
190731-23:02:28,641 nipype.workflow INFO:
	 [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
190731-23:02:30,389 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 8.44/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.dvars
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:40,662 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.dvars".
190731-23:02:42,398 nipype.workflow INFO:
	 [Job 93] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.dvars).
190731-23:02:42,404 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:42,553 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_std_dvars_header" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/add_std_dvars_header".
190731-23:02:42,593 nipype.workflow INFO:
	 [Node] Running "add_std_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader")
190731-23:02:42,613 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_std_dvars_header".
190731-23:02:42,613 nipype.workflow INFO:
	 [Job 94] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_std_dvars_header).
190731-23:02:42,757 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_dvars_header" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/add_dvars_header".
190731-23:02:42,788 nipype.workflow INFO:
	 [Node] Running "add_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader")
190731-23:02:42,808 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_dvars_header".
190731-23:02:42,808 nipype.workflow INFO:
	 [Job 95] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.add_dvars_header).
190731-23:02:42,954 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
190731-23:02:42,971 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
190731-23:02:43,138 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190731-23:02:44,398 nipype.workflow INFO:
	 [Job 96] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190731-23:02:44,404 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:02:44,539 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref".
190731-23:02:44,568 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
190731-23:02:45,665 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.665704:++ 3dvolreg: AFNI version=AFNI_17.1.10 (Jun  6 2017) [64-bit]
190731-23:02:45,666 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.665704:++ Authored by: RW Cox
190731-23:02:45,668 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.668305:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
190731-23:02:45,668 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.668305:  such as /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz,
190731-23:02:45,668 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.668305:  or viewing/combining it with volumes of differing obliquity,
190731-23:02:45,668 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.668305:  you should consider running: 
190731-23:02:45,668 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.668305:     3dWarp -deoblique 
190731-23:02:45,668 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.668305:  on this and  other oblique datasets in the same session.
190731-23:02:45,668 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.668305: See 3dWarp -help for details.
190731-23:02:45,668 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.668305:++ Oblique dataset:/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 31.610607 degrees from plumb.
190731-23:02:45,669 nipype.interface INFO:
	 stderr 2019-07-31T23:02:45.669047:++ Coarse del was 10, replaced with 3
190731-23:02:46,405 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 7.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:03:02,787 nipype.interface INFO:
	 stderr 2019-07-31T23:03:02.787672:++ Max displacement in automask = 0.19 (mm) at sub-brick 2
190731-23:03:02,787 nipype.interface INFO:
	 stderr 2019-07-31T23:03:02.787917:++ Max delta displ  in automask = 0.18 (mm) at sub-brick 3
190731-23:03:03,700 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref".
190731-23:03:04,420 nipype.workflow INFO:
	 [Job 173] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref).
190731-23:03:04,427 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:03:04,571 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/calc_dummy_scans".
190731-23:03:04,607 nipype.workflow INFO:
	 [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function")
190731-23:03:04,619 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans".
190731-23:03:04,619 nipype.workflow INFO:
	 [Job 192] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans).
190731-23:03:06,425 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4
190731-23:03:35,398 nipype.workflow INFO:
	 [Node] Finished "_inu_n40".
190731-23:03:35,408 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4".
190731-23:03:36,445 nipype.workflow INFO:
	 [Job 207] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4).
190731-23:03:36,453 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:03:36,651 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
190731-23:03:36,657 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/lap_target".
190731-23:03:36,747 nipype.workflow INFO:
	 [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_maths_corrected_maths.nii.gz Laplacian /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CC110069_T1w_ras_valid_maths_corrected.nii.gz 1.5 1
190731-23:03:36,762 nipype.workflow INFO:
	 [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
190731-23:03:38,449 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_target
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff
190731-23:03:43,49 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
190731-23:03:44,453 nipype.workflow INFO:
	 [Job 174] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff).
190731-23:03:44,460 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_target
190731-23:03:44,624 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
190731-23:03:44,663 nipype.workflow INFO:
	 [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
190731-23:03:46,456 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_target
190731-23:03:47,724 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
190731-23:03:47,831 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_target".
190731-23:03:48,457 nipype.workflow INFO:
	 [Job 208] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.lap_target).
190731-23:03:48,460 nipype.workflow INFO:
	 [Job 175] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm).
190731-23:03:48,468 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:03:48,650 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
190731-23:03:48,653 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/mrg_target".
190731-23:03:48,671 nipype.workflow INFO:
	 [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
190731-23:03:48,698 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/res_target".
190731-23:03:48,699 nipype.workflow INFO:
	 [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge")
190731-23:03:48,716 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.mrg_target".
190731-23:03:48,731 nipype.workflow INFO:
	 [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CC110069_T1w_ras_valid_maths_corrected.nii.gz sub-CC110069_T1w_ras_valid_maths_corrected_resampled.nii.gz 4 4 4 1
190731-23:03:50,459 nipype.workflow INFO:
	 [Job 209] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.mrg_target).
190731-23:03:50,466 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_target
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask
190731-23:03:50,837 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_target".
190731-23:03:51,116 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
190731-23:03:52,461 nipype.workflow INFO:
	 [Job 176] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
190731-23:03:52,464 nipype.workflow INFO:
	 [Job 210] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.res_target).
190731-23:03:52,471 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:03:52,656 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
190731-23:03:52,670 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/init_aff".
190731-23:03:52,745 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
190731-23:03:52,754 nipype.workflow INFO:
	 [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /home/wbreilly/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz,/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-CC110069_T1w_ras_valid_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1
190731-23:03:52,981 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190731-23:03:54,461 nipype.workflow INFO:
	 [Job 177] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190731-23:03:54,467 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.init_aff
190731-23:03:54,611 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr".
190731-23:03:54,636 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190731-23:03:54,674 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190731-23:03:54,674 nipype.workflow INFO:
	 [Job 178] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190731-23:03:55,172 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.init_aff".
190731-23:03:56,465 nipype.workflow INFO:
	 [Job 211] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.init_aff).
190731-23:03:56,472 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:03:56,653 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
190731-23:03:56,676 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/norm".
190731-23:03:56,692 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz
190731-23:03:56,727 nipype.workflow INFO:
	 [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --masks /home/wbreilly/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz --float 1 --initial-moving-transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /home/wbreilly/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CC110069_T1w_ras_valid_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform Affine[ 0.1 ] --metric MI[ /home/wbreilly/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CC110069_T1w_ras_valid_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /home/wbreilly/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CC110069_T1w_ras_valid_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-CC110069_T1w_ras_valid_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 -v --winsorize-image-intensities [ 0.025, 0.975 ]  --write-composite-transform 0
190731-23:03:57,837 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190731-23:03:58,466 nipype.workflow INFO:
	 [Job 179] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190731-23:03:58,474 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:03:58,633 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
190731-23:03:58,675 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
190731-23:04:00,157 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190731-23:04:00,470 nipype.workflow INFO:
	 [Job 180] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190731-23:04:00,479 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:00,638 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
190731-23:04:00,666 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
190731-23:04:01,33 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190731-23:04:02,466 nipype.workflow INFO:
	 [Job 181] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190731-23:04:02,469 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:02,592 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
190731-23:04:02,620 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
190731-23:04:02,835 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190731-23:04:04,469 nipype.workflow INFO:
	 [Job 182] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190731-23:04:04,472 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:04,600 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
190731-23:04:04,693 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
190731-23:04:06,475 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 5.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:19,860 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
190731-23:04:20,484 nipype.workflow INFO:
	 [Job 183] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
190731-23:04:20,488 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:20,613 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
190731-23:04:20,641 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190731-23:04:20,712 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190731-23:04:22,487 nipype.workflow INFO:
	 [Job 184] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190731-23:04:22,491 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:22,614 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
190731-23:04:22,642 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
190731-23:04:22,820 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190731-23:04:24,488 nipype.workflow INFO:
	 [Job 185] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190731-23:04:24,491 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:24,618 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
190731-23:04:24,632 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190731-23:04:24,667 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190731-23:04:26,490 nipype.workflow INFO:
	 [Job 186] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190731-23:04:26,495 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:26,637 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
190731-23:04:26,682 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
190731-23:04:26,821 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190731-23:04:28,493 nipype.workflow INFO:
	 [Job 187] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190731-23:04:28,498 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:28,654 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.dvars" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/dvars".
190731-23:04:28,716 nipype.workflow INFO:
	 [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
190731-23:04:30,499 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 5.64/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.dvars
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:40,37 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.dvars".
190731-23:04:40,504 nipype.workflow INFO:
	 [Job 188] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.dvars).
190731-23:04:40,508 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:04:40,640 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_std_dvars_header" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/add_std_dvars_header".
190731-23:04:40,750 nipype.workflow INFO:
	 [Node] Running "add_std_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader")
190731-23:04:40,769 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_std_dvars_header".
190731-23:04:40,769 nipype.workflow INFO:
	 [Job 189] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_std_dvars_header).
190731-23:04:40,906 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_dvars_header" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/add_dvars_header".
190731-23:04:40,958 nipype.workflow INFO:
	 [Node] Running "add_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader")
190731-23:04:40,976 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_dvars_header".
190731-23:04:40,977 nipype.workflow INFO:
	 [Job 190] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.add_dvars_header).
190731-23:04:41,136 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
190731-23:04:41,175 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
190731-23:04:41,334 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190731-23:04:42,506 nipype.workflow INFO:
	 [Job 191] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190731-23:04:42,512 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm
190731-23:26:02,732 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm".
190731-23:26:03,520 nipype.workflow INFO:
	 [Job 212] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.norm).
190731-23:26:03,528 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:26:03,705 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask".
190731-23:26:03,773 nipype.workflow INFO:
	 [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz --interpolation Gaussian --output tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_validate/sub-CC110069_T1w_ras_valid.nii.gz --transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ]
190731-23:26:05,525 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask
190731-23:27:17,90 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask".
190731-23:27:17,589 nipype.workflow INFO:
	 [Job 213] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask).
190731-23:27:17,597 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:27:17,781 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask".
190731-23:27:17,842 nipype.workflow INFO:
	 [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command:
ThresholdImage 3 /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000
190731-23:27:18,746 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask".
190731-23:27:19,591 nipype.workflow INFO:
	 [Job 214] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask).
190731-23:27:19,598 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:27:19,786 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask".
190731-23:27:19,792 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask".
190731-23:27:19,806 nipype.workflow INFO:
	 [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz MD /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 2
190731-23:27:19,858 nipype.workflow INFO:
	 [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz PadImage /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 10
190731-23:27:20,903 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask".
190731-23:27:21,249 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask".
190731-23:27:21,593 nipype.workflow INFO:
	 [Job 215] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask).
190731-23:27:21,596 nipype.workflow INFO:
	 [Job 216] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask).
190731-23:27:21,603 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:27:21,786 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask".
190731-23:27:21,821 nipype.workflow INFO:
	 [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz GetLargestComponent /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz
190731-23:27:23,200 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask".
190731-23:27:23,595 nipype.workflow INFO:
	 [Job 217] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask).
190731-23:27:23,602 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:27:23,792 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos".
190731-23:27:23,825 nipype.workflow INFO:
	 [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command:
Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CC110069_T1w_ras_valid_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-CC110069_T1w_ras_valid_maths_corrected_labeled.nii.gz] --use-random-seed 1
190731-23:27:25,601 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos
190731-23:28:17,411 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos".
190731-23:28:17,646 nipype.workflow INFO:
	 [Job 218] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos).
190731-23:28:17,653 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:17,838 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm".
190731-23:28:17,856 nipype.workflow INFO:
	 [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths.nii.gz PadImage /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-CC110069_T1w_ras_valid_maths_corrected_labeled.nii.gz 10
190731-23:28:19,105 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm".
190731-23:28:19,648 nipype.workflow INFO:
	 [Job 219] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm).
190731-23:28:19,655 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:19,837 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels".
190731-23:28:19,935 nipype.workflow INFO:
	 [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function")
190731-23:28:20,508 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels".
190731-23:28:21,650 nipype.workflow INFO:
	 [Job 220] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels).
190731-23:28:21,657 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:21,847 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf".
190731-23:28:21,854 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf".
190731-23:28:21,919 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm".
190731-23:28:21,922 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm".
190731-23:28:21,943 nipype.workflow INFO:
	 [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-01.nii.gz -10
190731-23:28:21,943 nipype.workflow INFO:
	 [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-01.nii.gz 10
190731-23:28:21,988 nipype.workflow INFO:
	 [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-02.nii.gz
190731-23:28:21,994 nipype.workflow INFO:
	 [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-03.nii.gz
190731-23:28:22,844 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf".
190731-23:28:23,459 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm".
190731-23:28:23,571 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm".
190731-23:28:23,649 nipype.workflow INFO:
	 [Job 221] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf).
190731-23:28:23,652 nipype.workflow INFO:
	 [Job 223] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm).
190731-23:28:23,654 nipype.workflow INFO:
	 [Job 229] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm).
190731-23:28:23,659 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf
190731-23:28:23,787 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm".
190731-23:28:23,790 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm".
190731-23:28:23,804 nipype.workflow INFO:
	 [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-02_maths.nii.gz 2
190731-23:28:23,804 nipype.workflow INFO:
	 [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz
190731-23:28:24,757 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm".
190731-23:28:25,653 nipype.workflow INFO:
	 [Job 230] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm).
190731-23:28:25,660 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf
190731-23:28:25,817 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm".
190731-23:28:25,844 nipype.workflow INFO:
	 [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10
190731-23:28:26,4 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf".
190731-23:28:27,6 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm".
190731-23:28:27,655 nipype.workflow INFO:
	 [Job 222] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf).
190731-23:28:27,658 nipype.workflow INFO:
	 [Job 231] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm).
190731-23:28:27,665 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm
190731-23:28:35,501 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm".
190731-23:28:35,662 nipype.workflow INFO:
	 [Job 224] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm).
190731-23:28:35,670 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:35,858 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm".
190731-23:28:35,900 nipype.workflow INFO:
	 [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-02_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz
190731-23:28:37,428 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm".
190731-23:28:37,664 nipype.workflow INFO:
	 [Job 225] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm).
190731-23:28:37,672 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:37,847 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm".
190731-23:28:37,878 nipype.workflow INFO:
	 [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 08_mult_gm_maths.nii.gz addtozero /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-CC110069_T1w_ras_valid_maths_corrected_labeled_maths_class-01_maths.nii.gz
190731-23:28:39,671 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm
190731-23:28:41,950 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm".
190731-23:28:43,670 nipype.workflow INFO:
	 [Job 226] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm).
190731-23:28:43,678 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:43,865 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm".
190731-23:28:43,927 nipype.workflow INFO:
	 [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz
190731-23:28:45,148 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm".
190731-23:28:45,672 nipype.workflow INFO:
	 [Job 227] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm).
190731-23:28:45,680 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:45,852 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm".
190731-23:28:45,909 nipype.workflow INFO:
	 [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10
190731-23:28:45,909 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm".
190731-23:28:45,943 nipype.workflow INFO:
	 [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz
190731-23:28:47,17 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm".
190731-23:28:47,674 nipype.workflow INFO:
	 [Job 228] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm).
190731-23:28:47,681 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm
190731-23:28:47,837 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms".
190731-23:28:47,851 nipype.workflow INFO:
	 [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge")
190731-23:28:47,867 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms".
190731-23:28:49,676 nipype.workflow INFO:
	 [Job 232] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms).
190731-23:28:49,683 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm
190731-23:28:49,907 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm".
190731-23:28:51,678 nipype.workflow INFO:
	 [Job 233] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm).
190731-23:28:51,686 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:51,862 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm".
190731-23:28:51,865 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2".
190731-23:28:51,878 nipype.workflow INFO:
	 [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10
190731-23:28:51,889 nipype.workflow INFO:
	 [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function")
190731-23:28:52,393 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2".
190731-23:28:53,82 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm".
190731-23:28:53,680 nipype.workflow INFO:
	 [Job 234] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm).
190731-23:28:53,683 nipype.workflow INFO:
	 [Job 235] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2).
190731-23:28:53,690 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:53,867 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7".
190731-23:28:53,903 nipype.workflow INFO:
	 [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz
190731-23:28:55,686 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7
190731-23:28:57,530 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7".
190731-23:28:57,684 nipype.workflow INFO:
	 [Job 236] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7).
190731-23:28:57,691 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:28:57,870 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7".
190731-23:28:57,948 nipype.workflow INFO:
	 [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2
190731-23:28:59,689 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7
190731-23:29:00,820 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7".
190731-23:29:01,687 nipype.workflow INFO:
	 [Job 237] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7).
190731-23:29:01,694 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:01,881 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7".
190731-23:29:01,927 nipype.workflow INFO:
	 [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz
190731-23:29:03,648 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7".
190731-23:29:03,689 nipype.workflow INFO:
	 [Job 238] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7).
190731-23:29:03,696 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:03,870 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7".
190731-23:29:03,884 nipype.workflow INFO:
	 [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4
190731-23:29:05,672 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7".
190731-23:29:05,691 nipype.workflow INFO:
	 [Job 239] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7).
190731-23:29:05,698 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:05,867 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7".
190731-23:29:05,908 nipype.workflow INFO:
	 [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2
190731-23:29:07,697 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7
190731-23:29:17,367 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7".
190731-23:29:17,700 nipype.workflow INFO:
	 [Job 240] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7).
190731-23:29:17,708 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:17,888 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2".
190731-23:29:17,921 nipype.workflow INFO:
	 [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz
190731-23:29:19,708 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2
190731-23:29:21,898 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2".
190731-23:29:23,707 nipype.workflow INFO:
	 [Job 241] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2).
190731-23:29:23,715 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:23,888 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2".
190731-23:29:23,903 nipype.workflow INFO:
	 [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5
190731-23:29:25,663 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2".
190731-23:29:25,710 nipype.workflow INFO:
	 [Job 242] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2).
190731-23:29:25,717 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:25,892 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2".
190731-23:29:25,951 nipype.workflow INFO:
	 [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5
190731-23:29:27,716 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2
190731-23:29:28,790 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2".
190731-23:29:29,714 nipype.workflow INFO:
	 [Job 243] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2).
190731-23:29:29,721 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:29,890 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask".
190731-23:29:29,951 nipype.workflow INFO:
	 [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10
190731-23:29:31,66 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask".
190731-23:29:31,716 nipype.workflow INFO:
	 [Job 244] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask).
190731-23:29:31,723 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:31,894 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform".
190731-23:29:31,935 nipype.workflow INFO:
	 [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function")
190731-23:29:32,309 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform".
190731-23:29:33,718 nipype.workflow INFO:
	 [Job 245] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform).
190731-23:29:33,725 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:33,898 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform".
190731-23:29:33,941 nipype.workflow INFO:
	 [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
190731-23:29:36,238 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform".
190731-23:29:36,238 nipype.workflow INFO:
	 [Job 246] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform).
190731-23:29:36,388 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:36,534 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_mask".
190731-23:29:36,552 nipype.workflow INFO:
	 [Node] Running "ds_t1_mask" ("smriprep.interfaces.DerivativesDataSink")
190731-23:29:37,583 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask".
190731-23:29:37,583 nipype.workflow INFO:
	 [Job 247] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask).
190731-23:29:37,725 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.sel_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/sel_wm".
190731-23:29:37,750 nipype.workflow INFO:
	 [Node] Running "sel_wm" ("nipype.interfaces.utility.base.Select")
190731-23:29:37,769 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.sel_wm".
190731-23:29:37,769 nipype.workflow INFO:
	 [Job 248] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.sel_wm).
190731-23:29:38,394 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:29:38,588 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final".
190731-23:29:38,624 nipype.workflow INFO:
	 [Node] Setting-up "_inu_n4_final0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0".
190731-23:29:38,676 nipype.workflow INFO:
	 [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_validate/sub-CC110069_T1w_ras_valid.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-CC110069_T1w_ras_valid_corrected.nii.gz, sub-CC110069_T1w_ras_valid_bias.nii.gz ] --shrink-factor 4 --weight-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz
190731-23:29:40,400 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final
190731-23:30:28,542 nipype.workflow INFO:
	 [Node] Finished "_inu_n4_final0".
190731-23:30:28,552 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final".
190731-23:30:30,433 nipype.workflow INFO:
	 [Job 249] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final).
190731-23:30:30,440 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:30:30,630 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/apply_mask".
190731-23:30:30,680 nipype.workflow INFO:
	 [Node] Setting-up "_apply_mask0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0".
190731-23:30:30,699 nipype.workflow INFO:
	 [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-CC110069_T1w_ras_valid_corrected.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-CC110069_T1w_ras_valid_corrected_masked.nii.gz
190731-23:30:32,439 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.apply_mask
190731-23:30:32,545 nipype.workflow INFO:
	 [Node] Finished "_apply_mask0".
190731-23:30:32,552 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.apply_mask".
190731-23:30:34,437 nipype.workflow INFO:
	 [Job 250] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.apply_mask).
190731-23:30:34,444 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:30:34,633 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.copy_xform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform".
190731-23:30:34,668 nipype.workflow INFO:
	 [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
190731-23:30:43,87 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.copy_xform".
190731-23:30:43,88 nipype.workflow INFO:
	 [Job 251] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.brain_extraction_wf.copy_xform).
190731-23:30:43,289 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190731-23:30:43,431 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/trunc_mov".
190731-23:30:43,437 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_preproc".
190731-23:30:43,457 nipype.workflow INFO:
	 [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-CC110069_T1w_ras_valid_corrected_xform_maths.nii.gz TruncateImageIntensity /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_xform.nii.gz 0.01 0.999 256
190731-23:30:43,463 nipype.workflow INFO:
	 [Node] Running "ds_t1_preproc" ("smriprep.interfaces.DerivativesDataSink")
190731-23:30:47,372 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.trunc_mov".
190731-23:30:57,380 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc".
190731-23:30:57,380 nipype.workflow INFO:
	 [Job 263] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc).
190731-23:30:57,553 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/gen_ref".
190731-23:30:57,580 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr_init".
190731-23:30:57,587 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/gen_ref".
190731-23:30:57,620 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr_init".
190731-23:30:57,637 nipype.workflow INFO:
	 [Job 252] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.trunc_mov).
190731-23:30:57,643 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
190731-23:30:57,644 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 4.79/8.79, Free processors: 3/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.t1_seg
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.gen_ref
190731-23:30:57,653 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
190731-23:30:57,663 nipype.workflow INFO:
	 [Node] Running "flt_bbr_init" ("niworkflows.interfaces.registration.FLIRTRPT"), a CommandLine Interface with command:
flirt -in /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -ref /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz -out uni_xform_masked_flirt.nii.gz -omat uni_xform_masked_flirt.mat -dof 6 -usesqform
190731-23:30:57,688 nipype.workflow INFO:
	 [Node] Running "flt_bbr_init" ("niworkflows.interfaces.registration.FLIRTRPT"), a CommandLine Interface with command:
flirt -in /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -ref /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz -out uni_xform_masked_flirt.nii.gz -omat uni_xform_masked_flirt.mat -dof 6 -usesqform
190731-23:30:57,829 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.t1_seg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg".
190731-23:30:57,845 nipype.workflow INFO:
	 [Node] Running "t1_seg" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -N -p -g -S 1 /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz
190731-23:30:58,379 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.gen_ref".
190731-23:30:58,475 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.gen_ref".
190731-23:30:59,638 nipype.workflow INFO:
	 [Job 264] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.gen_ref).
190731-23:30:59,640 nipype.workflow INFO:
	 [Job 266] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.gen_ref).
190731-23:30:59,644 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 5.39/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.t1_seg
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init
190731-23:31:54,499 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init".
190731-23:31:54,985 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init".
190731-23:31:55,692 nipype.workflow INFO:
	 [Job 265] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init).
190731-23:31:55,695 nipype.workflow INFO:
	 [Job 267] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr_init).
190731-23:31:55,702 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 5.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.t1_seg
190731-23:31:55,866 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration".
190731-23:31:55,882 nipype.workflow INFO:
	 [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization")
190731-23:31:57,699 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 3.79/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.t1_seg
190731-23:33:32,538 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.t1_seg".
190731-23:33:33,786 nipype.workflow INFO:
	 [Job 268] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.t1_seg).
190731-23:33:33,790 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 11 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:33:33,958 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_tpms".
190731-23:33:34,38 nipype.workflow INFO:
	 [Node] Running "ds_t1_tpms" ("smriprep.interfaces.DerivativesDataSink")
190731-23:33:40,806 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms".
190731-23:33:40,807 nipype.workflow INFO:
	 [Job 283] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpms).
190731-23:33:41,3 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/lut_t1_seg".
190731-23:33:41,11 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:33:41,46 nipype.workflow INFO:
	 [Node] Running "lut_t1_seg" ("nipype.interfaces.utility.wrappers.Function")
190731-23:33:41,638 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg".
190731-23:33:43,10 nipype.workflow INFO:
	 [Job 284] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1_seg).
190731-23:33:43,15 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:33:43,163 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_seg".
190731-23:33:43,190 nipype.workflow INFO:
	 [Node] Running "ds_t1_seg" ("smriprep.interfaces.DerivativesDataSink")
190731-23:33:45,960 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg".
190731-23:33:45,960 nipype.workflow INFO:
	 [Job 285] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_seg).
190731-23:33:46,127 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_roi" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/wm_roi".
190731-23:33:46,130 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_roi
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:33:46,161 nipype.workflow INFO:
	 [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI")
190731-23:33:52,156 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_roi".
190731-23:33:54,132 nipype.workflow INFO:
	 [Job 286] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_roi).
190731-23:33:54,136 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:33:54,294 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_roi" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/csf_roi".
190731-23:33:54,323 nipype.workflow INFO:
	 [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI")
190731-23:33:55,295 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_roi".
190731-23:33:56,134 nipype.workflow INFO:
	 [Job 287] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_roi).
190731-23:33:56,137 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:33:56,293 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tpms_add_csf_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/tpms_add_csf_wm".
190731-23:33:56,310 nipype.workflow INFO:
	 [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs")
190731-23:33:57,763 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tpms_add_csf_wm".
190731-23:33:58,136 nipype.workflow INFO:
	 [Job 288] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tpms_add_csf_wm).
190731-23:33:58,139 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:33:58,278 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_roi" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/acc_roi".
190731-23:33:58,359 nipype.workflow INFO:
	 [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI")
190731-23:34:00,143 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_roi
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:34:04,158 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_roi".
190731-23:34:06,146 nipype.workflow INFO:
	 [Job 289] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_roi).
190731-23:34:06,152 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:34:06,307 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.wm_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/wm_mask".
190731-23:34:06,341 nipype.workflow INFO:
	 [Node] Running "wm_mask" ("nipype.interfaces.utility.wrappers.Function")
190731-23:34:06,823 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.wm_mask".
190731-23:34:08,148 nipype.workflow INFO:
	 [Job 290] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.wm_mask).
190731-23:34:08,153 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:34:08,317 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr".
190731-23:34:08,358 nipype.workflow INFO:
	 [Node] Running "flt_bbr" ("niworkflows.interfaces.registration.FLIRTRPT"), a CommandLine Interface with command:
flirt -in /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -ref /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz -out uni_xform_masked_flirt.nii.gz -omat uni_xform_masked_flirt.mat -searchcost bbr -dof 6 -init /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr_init/uni_xform_masked_flirt.mat -schedule /share/apps/src/fsl-5.0.10/etc/flirtsch/bbr.sch -wmseg /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform_seg_wm.nii.gz
190731-23:34:10,153 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:09,0 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr".
190731-23:40:10,510 nipype.workflow INFO:
	 [Job 291] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr).
190731-23:40:10,516 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:10,666 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.reports" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/reports".
190731-23:40:10,700 nipype.workflow INFO:
	 [Node] Running "reports" ("nipype.interfaces.utility.base.Merge")
190731-23:40:10,714 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.reports".
190731-23:40:10,714 nipype.workflow INFO:
	 [Job 292] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.reports).
190731-23:40:10,865 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.transforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/transforms".
190731-23:40:10,901 nipype.workflow INFO:
	 [Node] Running "transforms" ("nipype.interfaces.utility.base.Merge")
190731-23:40:10,914 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.transforms".
190731-23:40:10,914 nipype.workflow INFO:
	 [Job 293] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.transforms).
190731-23:40:11,70 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_roi" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/wm_roi".
190731-23:40:11,132 nipype.workflow INFO:
	 [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI")
190731-23:40:12,515 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_roi
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:17,457 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_roi".
190731-23:40:18,516 nipype.workflow INFO:
	 [Job 388] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_roi).
190731-23:40:18,521 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:18,722 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_roi" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/csf_roi".
190731-23:40:18,762 nipype.workflow INFO:
	 [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI")
190731-23:40:19,759 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_roi".
190731-23:40:20,518 nipype.workflow INFO:
	 [Job 389] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_roi).
190731-23:40:20,523 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:20,674 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tpms_add_csf_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/tpms_add_csf_wm".
190731-23:40:20,727 nipype.workflow INFO:
	 [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs")
190731-23:40:22,84 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tpms_add_csf_wm".
190731-23:40:22,518 nipype.workflow INFO:
	 [Job 390] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tpms_add_csf_wm).
190731-23:40:22,521 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:22,646 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_roi" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/acc_roi".
190731-23:40:22,660 nipype.workflow INFO:
	 [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI")
190731-23:40:24,523 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_roi
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:28,905 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_roi".
190731-23:40:30,526 nipype.workflow INFO:
	 [Job 391] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_roi).
190731-23:40:30,532 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:30,682 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.wm_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/wm_mask".
190731-23:40:30,708 nipype.workflow INFO:
	 [Node] Running "wm_mask" ("nipype.interfaces.utility.wrappers.Function")
190731-23:40:31,205 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.wm_mask".
190731-23:40:32,528 nipype.workflow INFO:
	 [Job 392] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.wm_mask).
190731-23:40:32,533 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:40:32,691 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr".
190731-23:40:32,733 nipype.workflow INFO:
	 [Node] Running "flt_bbr" ("niworkflows.interfaces.registration.FLIRTRPT"), a CommandLine Interface with command:
flirt -in /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -ref /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz -out uni_xform_masked_flirt.nii.gz -omat uni_xform_masked_flirt.mat -searchcost bbr -dof 6 -init /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr_init/uni_xform_masked_flirt.mat -schedule /share/apps/src/fsl-5.0.10/etc/flirtsch/bbr.sch -wmseg /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform_seg_wm.nii.gz
190731-23:40:34,533 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:46:47,670 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr".
190731-23:46:48,904 nipype.workflow INFO:
	 [Job 393] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.flt_bbr).
190731-23:46:48,910 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:46:49,61 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.reports" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/reports".
190731-23:46:49,101 nipype.workflow INFO:
	 [Node] Running "reports" ("nipype.interfaces.utility.base.Merge")
190731-23:46:49,115 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.reports".
190731-23:46:49,115 nipype.workflow INFO:
	 [Job 394] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.reports).
190731-23:46:49,259 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.transforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/transforms".
190731-23:46:49,321 nipype.workflow INFO:
	 [Node] Running "transforms" ("nipype.interfaces.utility.base.Merge")
190731-23:46:49,332 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.transforms".
190731-23:46:49,332 nipype.workflow INFO:
	 [Job 395] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.transforms).
190731-23:46:49,485 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.seg_rpt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/seg_rpt".
190731-23:46:49,522 nipype.workflow INFO:
	 [Node] Running "seg_rpt" ("niworkflows.interfaces.masks.ROIsPlot")
190731-23:46:50,908 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.seg_rpt
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:11,887 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.seg_rpt".
190731-23:48:12,986 nipype.workflow INFO:
	 [Job 490] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.seg_rpt).
190731-23:48:12,993 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:13,188 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_reports_wf/ds_t1_seg_mask_report".
190731-23:48:13,212 nipype.workflow INFO:
	 [Node] Running "ds_t1_seg_mask_report" ("smriprep.interfaces.DerivativesDataSink")
190731-23:48:13,230 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report".
190731-23:48:13,230 nipype.workflow INFO:
	 [Job 491] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_reports_wf.ds_t1_seg_mask_report).
190731-23:48:13,657 nipype.workflow INFO:
	 [Node] Setting-up "_fsl_to_lta0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta0".
190731-23:48:13,693 nipype.workflow INFO:
	 [Node] Running "_fsl_to_lta0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command:
lta_convert --infsl /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr/uni_xform_masked_flirt.mat --outlta /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta0/out.lta --src /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz --trg /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz
190731-23:48:13,833 nipype.workflow INFO:
	 [Node] Finished "_fsl_to_lta0".
190731-23:48:14,987 nipype.workflow INFO:
	 [Job 496] Completed (_fsl_to_lta0).
190731-23:48:14,992 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:15,143 nipype.workflow INFO:
	 [Node] Setting-up "_fsl_to_lta1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta1".
190731-23:48:15,198 nipype.workflow INFO:
	 [Node] Running "_fsl_to_lta1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command:
lta_convert --infsl /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr_init/uni_xform_masked_flirt.mat --outlta /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta1/out.lta --src /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz --trg /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz
190731-23:48:15,332 nipype.workflow INFO:
	 [Node] Finished "_fsl_to_lta1".
190731-23:48:16,989 nipype.workflow INFO:
	 [Job 497] Completed (_fsl_to_lta1).
190731-23:48:16,994 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:17,148 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl_to_lta" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta".
190731-23:48:17,233 nipype.workflow INFO:
	 [Node] Setting-up "_fsl_to_lta0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta0".
190731-23:48:17,237 nipype.workflow INFO:
	 [Node] Cached "_fsl_to_lta0" - collecting precomputed outputs
190731-23:48:17,237 nipype.workflow INFO:
	 [Node] "_fsl_to_lta0" found cached.
190731-23:48:17,238 nipype.workflow INFO:
	 [Node] Setting-up "_fsl_to_lta1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta1".
190731-23:48:17,241 nipype.workflow INFO:
	 [Node] Cached "_fsl_to_lta1" - collecting precomputed outputs
190731-23:48:17,241 nipype.workflow INFO:
	 [Node] "_fsl_to_lta1" found cached.
190731-23:48:17,248 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl_to_lta".
190731-23:48:18,992 nipype.workflow INFO:
	 [Job 294] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl_to_lta).
190731-23:48:18,998 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:19,139 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.compare_transforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/compare_transforms".
190731-23:48:19,199 nipype.workflow INFO:
	 [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function")
190731-23:48:19,219 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.compare_transforms".
190731-23:48:20,993 nipype.workflow INFO:
	 [Job 295] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.compare_transforms).
190731-23:48:20,999 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:21,150 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.select_report" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/select_report".
190731-23:48:21,183 nipype.workflow INFO:
	 [Node] Running "select_report" ("nipype.interfaces.utility.base.Select")
190731-23:48:21,196 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.select_report".
190731-23:48:21,197 nipype.workflow INFO:
	 [Job 296] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.select_report).
190731-23:48:21,349 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.select_transform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/select_transform".
190731-23:48:21,363 nipype.workflow INFO:
	 [Node] Running "select_transform" ("nipype.interfaces.utility.base.Select")
190731-23:48:21,376 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.select_transform".
190731-23:48:21,377 nipype.workflow INFO:
	 [Job 298] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.select_transform).
190731-23:48:21,529 nipype.workflow INFO:
	 [Node] Setting-up "_fsl_to_lta0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta0".
190731-23:48:21,580 nipype.workflow INFO:
	 [Node] Running "_fsl_to_lta0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command:
lta_convert --infsl /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr/uni_xform_masked_flirt.mat --outlta /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta0/out.lta --src /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz --trg /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz
190731-23:48:21,736 nipype.workflow INFO:
	 [Node] Finished "_fsl_to_lta0".
190731-23:48:22,995 nipype.workflow INFO:
	 [Job 498] Completed (_fsl_to_lta0).
190731-23:48:22,999 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:23,152 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.ds_report_reg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/ds_report_reg".
190731-23:48:23,225 nipype.workflow INFO:
	 [Node] Running "ds_report_reg" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:48:23,242 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.ds_report_reg".
190731-23:48:23,242 nipype.workflow INFO:
	 [Job 297] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.ds_report_reg).
190731-23:48:23,402 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_fwd" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd".
190731-23:48:23,413 nipype.workflow INFO:
	 [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz -src /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr/uni_xform_masked_flirt.mat -fsl2ras -oitk /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd/affine.txt
190731-23:48:23,824 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_fwd".
190731-23:48:24,997 nipype.workflow INFO:
	 [Job 299] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_fwd).
190731-23:48:25,4 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:25,165 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.merge_xforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/merge_xforms".
190731-23:48:25,200 nipype.workflow INFO:
	 [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge")
190731-23:48:25,211 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.merge_xforms".
190731-23:48:25,211 nipype.workflow INFO:
	 [Job 324] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.merge_xforms).
190731-23:48:25,354 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/mask_t1w_tfm".
190731-23:48:25,407 nipype.workflow INFO:
	 [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_masked_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/gen_ref/sub-CC110069_T1w_ras_valid_corrected_masked_xform_reference.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd/affine.txt
190731-23:48:27,1 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.69/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.mask_t1w_tfm
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:27,938 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.mask_t1w_tfm".
190731-23:48:29,0 nipype.workflow INFO:
	 [Job 331] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.mask_t1w_tfm).
190731-23:48:29,5 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:29,139 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.boldmask_to_t1w" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/boldmask_to_t1w".
190731-23:48:29,181 nipype.workflow INFO:
	 [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd/affine.txt
190731-23:48:31,3 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.69/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.boldmask_to_t1w
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:31,788 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.boldmask_to_t1w".
190731-23:48:33,2 nipype.workflow INFO:
	 [Job 332] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.boldmask_to_t1w).
190731-23:48:33,7 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:33,159 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_mask_t1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/func_derivatives_wf/ds_bold_mask_t1".
190731-23:48:33,174 nipype.workflow INFO:
	 [Node] Running "ds_bold_mask_t1" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:48:33,254 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_mask_t1".
190731-23:48:33,254 nipype.workflow INFO:
	 [Job 333] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_mask_t1).
190731-23:48:33,407 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
190731-23:48:33,515 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans_dil.nii.gz
190731-23:48:33,785 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190731-23:48:35,3 nipype.workflow INFO:
	 [Job 334] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190731-23:48:35,9 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:35,160 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.invt_bbr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/invt_bbr".
190731-23:48:35,178 nipype.workflow INFO:
	 [Node] Running "invt_bbr" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/invt_bbr/uni_xform_masked_flirt_inv.mat -inverse /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr/uni_xform_masked_flirt.mat
190731-23:48:35,303 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.invt_bbr".
190731-23:48:37,8 nipype.workflow INFO:
	 [Job 347] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.invt_bbr).
190731-23:48:37,18 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:37,180 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_inv" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv".
190731-23:48:37,211 nipype.workflow INFO:
	 [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/invt_bbr/uni_xform_masked_flirt_inv.mat -fsl2ras -oitk /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:48:37,606 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_inv".
190731-23:48:39,7 nipype.workflow INFO:
	 [Job 348] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_inv).
190731-23:48:39,13 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:39,176 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.map_seg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/fmap_unwarp_report_wf/map_seg".
190731-23:48:39,193 nipype.workflow INFO:
	 [Node] Running "map_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform_seg.nii.gz --interpolation MultiLabel --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_seg_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/sdc_wf/sdc_unwarp_wf/apply_fov_mask/ref_bold_corrected_trans_masked.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:48:41,13 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 6.49/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.map_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:43,721 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.map_seg".
190731-23:48:45,13 nipype.workflow INFO:
	 [Job 349] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.map_seg).
190731-23:48:45,21 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:45,181 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.sel_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/fmap_unwarp_report_wf/sel_wm".
190731-23:48:45,240 nipype.workflow INFO:
	 [Node] Running "sel_wm" ("nipype.interfaces.utility.wrappers.Function")
190731-23:48:45,274 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.sel_wm".
190731-23:48:47,14 nipype.workflow INFO:
	 [Job 350] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.sel_wm).
190731-23:48:47,19 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:48:47,175 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.bold_rpt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/fmap_unwarp_report_wf/bold_rpt".
190731-23:48:47,201 nipype.workflow INFO:
	 [Node] Running "bold_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT")
190731-23:48:49,19 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 6.69/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.bold_rpt
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:03,76 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.bold_rpt".
190731-23:49:05,28 nipype.workflow INFO:
	 [Job 351] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.bold_rpt).
190731-23:49:05,35 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:05,186 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.ds_report_sdc" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/fmap_unwarp_report_wf/ds_report_sdc".
190731-23:49:05,195 nipype.workflow INFO:
	 [Node] Running "ds_report_sdc" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:49:05,211 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.ds_report_sdc".
190731-23:49:05,211 nipype.workflow INFO:
	 [Job 352] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.fmap_unwarp_report_wf.ds_report_sdc).
190731-23:49:05,360 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/tcc_tfm".
190731-23:49:05,414 nipype.workflow INFO:
	 [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/csf_roi/09_relabel_wm_mask_xform_eroded.nii.gz --interpolation NearestNeighbor --output 09_relabel_wm_mask_xform_eroded_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:49:05,650 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_tfm".
190731-23:49:07,32 nipype.workflow INFO:
	 [Job 355] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_tfm).
190731-23:49:07,37 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:07,188 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/tcc_msk".
190731-23:49:07,224 nipype.workflow INFO:
	 [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function")
190731-23:49:07,266 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_msk".
190731-23:49:09,33 nipype.workflow INFO:
	 [Job 356] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_msk).
190731-23:49:09,39 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:09,198 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcompcor" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/tcompcor".
190731-23:49:09,209 nipype.workflow INFO:
	 [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor")
190731-23:49:10,282 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcompcor".
190731-23:49:11,36 nipype.workflow INFO:
	 [Job 357] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcompcor).
190731-23:49:11,43 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:11,203 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_metadata_fmt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/tcc_metadata_fmt".
190731-23:49:11,246 nipype.workflow INFO:
	 [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON")
190731-23:49:11,308 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_metadata_fmt".
190731-23:49:13,37 nipype.workflow INFO:
	 [Job 358] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.tcc_metadata_fmt).
190731-23:49:13,43 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:13,198 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/acc_tfm".
190731-23:49:13,218 nipype.workflow INFO:
	 [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/acc_roi/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_tpmsum_roi_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:49:13,483 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_tfm".
190731-23:49:15,39 nipype.workflow INFO:
	 [Job 359] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_tfm).
190731-23:49:15,45 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:15,205 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/acc_msk".
190731-23:49:15,246 nipype.workflow INFO:
	 [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function")
190731-23:49:15,283 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_msk".
190731-23:49:17,41 nipype.workflow INFO:
	 [Job 360] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_msk).
190731-23:49:17,47 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:17,195 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_compcor" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/merge_compcor".
190731-23:49:17,221 nipype.workflow INFO:
	 [Node] Running "merge_compcor" ("nipype.interfaces.utility.base.Merge")
190731-23:49:17,232 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_compcor".
190731-23:49:17,232 nipype.workflow INFO:
	 [Job 361] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_compcor).
190731-23:49:17,358 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/wm_tfm".
190731-23:49:17,391 nipype.workflow INFO:
	 [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/wm_roi/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_2_roi_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:49:17,608 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_tfm".
190731-23:49:19,43 nipype.workflow INFO:
	 [Job 364] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_tfm).
190731-23:49:19,50 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:19,208 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.rois_plot" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/rois_plot".
190731-23:49:19,295 nipype.workflow INFO:
	 [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot")
190731-23:49:21,47 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.64/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.rois_plot
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:30,19 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.rois_plot".
190731-23:49:31,54 nipype.workflow INFO:
	 [Job 362] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.rois_plot).
190731-23:49:31,59 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:31,218 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_bold_rois" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/ds_report_bold_rois".
190731-23:49:31,235 nipype.workflow INFO:
	 [Node] Running "ds_report_bold_rois" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:49:31,252 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_bold_rois".
190731-23:49:31,252 nipype.workflow INFO:
	 [Job 363] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_bold_rois).
190731-23:49:31,380 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/wm_msk".
190731-23:49:31,413 nipype.workflow INFO:
	 [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function")
190731-23:49:31,457 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_msk".
190731-23:49:33,56 nipype.workflow INFO:
	 [Job 365] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.wm_msk).
190731-23:49:33,61 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:33,215 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/csf_tfm".
190731-23:49:33,300 nipype.workflow INFO:
	 [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/csf_roi/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_roi_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:49:33,556 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_tfm".
190731-23:49:35,58 nipype.workflow INFO:
	 [Job 366] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_tfm).
190731-23:49:35,63 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:35,215 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/csf_msk".
190731-23:49:35,235 nipype.workflow INFO:
	 [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function")
190731-23:49:35,290 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_msk".
190731-23:49:37,60 nipype.workflow INFO:
	 [Job 367] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.csf_msk).
190731-23:49:37,65 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:37,317 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_rois" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/merge_rois".
190731-23:49:37,344 nipype.workflow INFO:
	 [Node] Running "merge_rois" ("nipype.interfaces.utility.base.Merge")
190731-23:49:37,359 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_rois".
190731-23:49:37,359 nipype.workflow INFO:
	 [Job 368] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_rois).
190731-23:49:37,510 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_rois_cc" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/merge_rois_cc".
190731-23:49:37,524 nipype.workflow INFO:
	 [Node] Running "merge_rois_cc" ("nipype.interfaces.utility.base.Merge")
190731-23:49:37,535 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_rois_cc".
190731-23:49:37,535 nipype.workflow INFO:
	 [Job 370] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_rois_cc).
190731-23:49:37,661 nipype.workflow INFO:
	 [Node] Setting-up "_fsl_to_lta1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta1".
190731-23:49:37,695 nipype.workflow INFO:
	 [Node] Running "_fsl_to_lta1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command:
lta_convert --infsl /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr_init/uni_xform_masked_flirt.mat --outlta /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta1/out.lta --src /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz --trg /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz
190731-23:49:37,838 nipype.workflow INFO:
	 [Node] Finished "_fsl_to_lta1".
190731-23:49:39,60 nipype.workflow INFO:
	 [Job 499] Completed (_fsl_to_lta1).
190731-23:49:39,64 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:39,220 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.signals" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/signals".
190731-23:49:39,265 nipype.workflow INFO:
	 [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction")
190731-23:49:40,346 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.signals".
190731-23:49:41,62 nipype.workflow INFO:
	 [Job 369] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.signals).
190731-23:49:41,67 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:41,224 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acompcor" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/acompcor".
190731-23:49:41,293 nipype.workflow INFO:
	 [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor")
190731-23:49:43,67 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.64/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acompcor
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:45,496 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acompcor".
190731-23:49:47,66 nipype.workflow INFO:
	 [Job 371] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acompcor).
190731-23:49:47,71 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:47,204 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_compcor_metadata" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/merge_compcor_metadata".
190731-23:49:47,243 nipype.workflow INFO:
	 [Node] Running "merge_compcor_metadata" ("nipype.interfaces.utility.base.Merge")
190731-23:49:47,273 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_compcor_metadata".
190731-23:49:47,273 nipype.workflow INFO:
	 [Job 372] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_compcor_metadata).
190731-23:49:47,439 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_metadata_fmt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/acc_metadata_fmt".
190731-23:49:47,450 nipype.workflow INFO:
	 [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON")
190731-23:49:47,712 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_metadata_fmt".
190731-23:49:49,67 nipype.workflow INFO:
	 [Job 375] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.acc_metadata_fmt).
190731-23:49:49,73 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:49,233 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.compcor_plot" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/compcor_plot".
190731-23:49:49,258 nipype.workflow INFO:
	 [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot")
190731-23:49:50,93 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.compcor_plot".
190731-23:49:51,69 nipype.workflow INFO:
	 [Job 373] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.compcor_plot).
190731-23:49:51,75 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:51,226 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_compcor" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/ds_report_compcor".
190731-23:49:51,260 nipype.workflow INFO:
	 [Node] Running "ds_report_compcor" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:49:51,277 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_compcor".
190731-23:49:51,277 nipype.workflow INFO:
	 [Job 374] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_compcor).
190731-23:49:51,569 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_confound_metadata" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/merge_confound_metadata".
190731-23:49:51,857 nipype.workflow INFO:
	 [Node] Running "merge_confound_metadata" ("nipype.interfaces.utility.base.Merge")
190731-23:49:52,236 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_confound_metadata".
190731-23:49:52,237 nipype.workflow INFO:
	 [Job 376] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_confound_metadata).
190731-23:49:52,387 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.concat" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/concat".
190731-23:49:52,424 nipype.workflow INFO:
	 [Node] Running "concat" ("fmriprep.interfaces.confounds.GatherConfounds")
190731-23:49:52,567 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.concat".
190731-23:49:52,567 nipype.workflow INFO:
	 [Job 378] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.concat).
190731-23:49:52,689 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl_to_lta" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta".
190731-23:49:52,700 nipype.workflow INFO:
	 [Node] Setting-up "_fsl_to_lta0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta0".
190731-23:49:52,703 nipype.workflow INFO:
	 [Node] Cached "_fsl_to_lta0" - collecting precomputed outputs
190731-23:49:52,703 nipype.workflow INFO:
	 [Node] "_fsl_to_lta0" found cached.
190731-23:49:52,704 nipype.workflow INFO:
	 [Node] Setting-up "_fsl_to_lta1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl_to_lta/mapflow/_fsl_to_lta1".
190731-23:49:52,707 nipype.workflow INFO:
	 [Node] Cached "_fsl_to_lta1" - collecting precomputed outputs
190731-23:49:52,708 nipype.workflow INFO:
	 [Node] "_fsl_to_lta1" found cached.
190731-23:49:52,718 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl_to_lta".
190731-23:49:53,68 nipype.workflow INFO:
	 [Job 396] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl_to_lta).
190731-23:49:53,75 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:49:53,338 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_confound_metadata2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/merge_confound_metadata2".
190731-23:49:53,678 nipype.workflow INFO:
	 [Node] Running "merge_confound_metadata2" ("niworkflows.interfaces.utils.DictMerge")
190731-23:49:53,973 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_confound_metadata2".
190731-23:49:53,973 nipype.workflow INFO:
	 [Job 377] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.merge_confound_metadata2).
190731-23:49:54,129 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.conf_corr_plot" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/conf_corr_plot".
190731-23:49:54,140 nipype.workflow INFO:
	 [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot")
190731-23:49:55,74 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.conf_corr_plot
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:00,67 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.conf_corr_plot".
190731-23:50:01,76 nipype.workflow INFO:
	 [Job 379] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.conf_corr_plot).
190731-23:50:01,81 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:01,215 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_conf_corr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/ds_report_conf_corr".
190731-23:50:01,253 nipype.workflow INFO:
	 [Node] Running "ds_report_conf_corr" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:50:01,270 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_conf_corr".
190731-23:50:01,270 nipype.workflow INFO:
	 [Job 380] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.ds_report_conf_corr).
190731-23:50:01,425 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.model_expansion" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/model_expansion".
190731-23:50:01,456 nipype.workflow INFO:
	 [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel")
190731-23:50:01,689 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.model_expansion".
190731-23:50:03,77 nipype.workflow INFO:
	 [Job 381] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.model_expansion).
190731-23:50:03,83 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:03,238 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.spike_regressors" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_confounds_wf/spike_regressors".
190731-23:50:03,336 nipype.workflow INFO:
	 [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors")
190731-23:50:03,469 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.spike_regressors".
190731-23:50:05,79 nipype.workflow INFO:
	 [Job 382] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_confounds_wf.spike_regressors).
190731-23:50:05,85 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:05,351 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_confounds" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/func_derivatives_wf/ds_confounds".
190731-23:50:05,566 nipype.workflow INFO:
	 [Node] Running "ds_confounds" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:50:05,618 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_confounds".
190731-23:50:05,618 nipype.workflow INFO:
	 [Job 383] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_confounds).
190731-23:50:05,741 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.summary" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/summary".
190731-23:50:05,797 nipype.workflow INFO:
	 [Node] Running "summary" ("fmriprep.interfaces.reports.FunctionalSummary")
190731-23:50:05,812 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.summary".
190731-23:50:05,812 nipype.workflow INFO:
	 [Job 384] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.summary).
190731-23:50:05,956 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.compare_transforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/compare_transforms".
190731-23:50:06,15 nipype.workflow INFO:
	 [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function")
190731-23:50:06,38 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.compare_transforms".
190731-23:50:07,80 nipype.workflow INFO:
	 [Job 397] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.compare_transforms).
190731-23:50:07,85 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:07,215 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.ds_report_summary" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/ds_report_summary".
190731-23:50:07,232 nipype.workflow INFO:
	 [Node] Running "ds_report_summary" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:50:07,249 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.ds_report_summary".
190731-23:50:07,249 nipype.workflow INFO:
	 [Job 385] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.ds_report_summary).
190731-23:50:07,404 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.select_report" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/select_report".
190731-23:50:07,418 nipype.workflow INFO:
	 [Node] Running "select_report" ("nipype.interfaces.utility.base.Select")
190731-23:50:07,431 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.select_report".
190731-23:50:07,432 nipype.workflow INFO:
	 [Job 398] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.select_report).
190731-23:50:07,586 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.select_transform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/select_transform".
190731-23:50:07,623 nipype.workflow INFO:
	 [Node] Running "select_transform" ("nipype.interfaces.utility.base.Select")
190731-23:50:07,637 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.select_transform".
190731-23:50:07,637 nipype.workflow INFO:
	 [Job 400] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.select_transform).
190731-23:50:09,84 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:09,239 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.ds_report_reg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/ds_report_reg".
190731-23:50:09,286 nipype.workflow INFO:
	 [Node] Running "ds_report_reg" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:50:09,302 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.ds_report_reg".
190731-23:50:09,302 nipype.workflow INFO:
	 [Job 399] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.ds_report_reg).
190731-23:50:09,461 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_fwd" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd".
190731-23:50:09,497 nipype.workflow INFO:
	 [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz -src /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr/uni_xform_masked_flirt.mat -fsl2ras -oitk /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd/affine.txt
190731-23:50:09,922 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_fwd".
190731-23:50:11,83 nipype.workflow INFO:
	 [Job 401] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_fwd).
190731-23:50:11,88 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:11,243 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.merge_xforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/merge_xforms".
190731-23:50:11,283 nipype.workflow INFO:
	 [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge")
190731-23:50:11,297 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.merge_xforms".
190731-23:50:11,297 nipype.workflow INFO:
	 [Job 426] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.merge_xforms).
190731-23:50:11,456 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/mask_t1w_tfm".
190731-23:50:11,546 nipype.workflow INFO:
	 [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_masked_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/gen_ref/sub-CC110069_T1w_ras_valid_corrected_masked_xform_reference.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd/affine.txt
190731-23:50:13,87 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.69/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.mask_t1w_tfm
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:13,646 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.mask_t1w_tfm".
190731-23:50:15,86 nipype.workflow INFO:
	 [Job 433] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.mask_t1w_tfm).
190731-23:50:15,91 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:15,249 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.boldmask_to_t1w" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/boldmask_to_t1w".
190731-23:50:15,280 nipype.workflow INFO:
	 [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd/affine.txt
190731-23:50:17,91 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.69/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.boldmask_to_t1w
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:17,943 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.boldmask_to_t1w".
190731-23:50:19,88 nipype.workflow INFO:
	 [Job 434] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.boldmask_to_t1w).
190731-23:50:19,91 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:19,215 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_mask_t1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/func_derivatives_wf/ds_bold_mask_t1".
190731-23:50:19,227 nipype.workflow INFO:
	 [Node] Running "ds_bold_mask_t1" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:50:19,284 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_mask_t1".
190731-23:50:19,284 nipype.workflow INFO:
	 [Job 435] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_mask_t1).
190731-23:50:19,413 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
190731-23:50:19,462 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans_dil.nii.gz
190731-23:50:19,771 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190731-23:50:21,92 nipype.workflow INFO:
	 [Job 436] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190731-23:50:21,97 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:21,251 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.invt_bbr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/invt_bbr".
190731-23:50:21,286 nipype.workflow INFO:
	 [Node] Running "invt_bbr" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/invt_bbr/uni_xform_masked_flirt_inv.mat -inverse /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/flt_bbr/uni_xform_masked_flirt.mat
190731-23:50:21,416 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.invt_bbr".
190731-23:50:23,94 nipype.workflow INFO:
	 [Job 449] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.invt_bbr).
190731-23:50:23,99 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:23,253 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_inv" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv".
190731-23:50:23,299 nipype.workflow INFO:
	 [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_masked_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/invt_bbr/uni_xform_masked_flirt_inv.mat -fsl2ras -oitk /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:50:23,724 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_inv".
190731-23:50:25,96 nipype.workflow INFO:
	 [Job 450] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_reg_wf.fsl_bbr_wf.fsl2itk_inv).
190731-23:50:25,103 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:25,267 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.map_seg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/fmap_unwarp_report_wf/map_seg".
190731-23:50:25,362 nipype.workflow INFO:
	 [Node] Running "map_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform_seg.nii.gz --interpolation MultiLabel --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_seg_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/sdc_wf/sdc_unwarp_wf/apply_fov_mask/ref_bold_corrected_trans_masked.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:50:27,99 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 6.49/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.map_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:29,546 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.map_seg".
190731-23:50:31,100 nipype.workflow INFO:
	 [Job 451] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.map_seg).
190731-23:50:31,105 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:31,260 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.sel_wm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/fmap_unwarp_report_wf/sel_wm".
190731-23:50:31,311 nipype.workflow INFO:
	 [Node] Running "sel_wm" ("nipype.interfaces.utility.wrappers.Function")
190731-23:50:31,345 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.sel_wm".
190731-23:50:33,102 nipype.workflow INFO:
	 [Job 452] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.sel_wm).
190731-23:50:33,107 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:33,264 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.bold_rpt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/fmap_unwarp_report_wf/bold_rpt".
190731-23:50:33,277 nipype.workflow INFO:
	 [Node] Running "bold_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT")
190731-23:50:35,107 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 6.69/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.bold_rpt
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:49,825 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.bold_rpt".
190731-23:50:51,118 nipype.workflow INFO:
	 [Job 453] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.bold_rpt).
190731-23:50:51,123 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:51,277 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.ds_report_sdc" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/fmap_unwarp_report_wf/ds_report_sdc".
190731-23:50:51,313 nipype.workflow INFO:
	 [Node] Running "ds_report_sdc" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:50:51,332 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.ds_report_sdc".
190731-23:50:51,332 nipype.workflow INFO:
	 [Job 454] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.fmap_unwarp_report_wf.ds_report_sdc).
190731-23:50:51,492 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/tcc_tfm".
190731-23:50:51,506 nipype.workflow INFO:
	 [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/csf_roi/09_relabel_wm_mask_xform_eroded.nii.gz --interpolation NearestNeighbor --output 09_relabel_wm_mask_xform_eroded_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:50:51,755 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_tfm".
190731-23:50:53,120 nipype.workflow INFO:
	 [Job 457] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_tfm).
190731-23:50:53,126 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:53,294 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/tcc_msk".
190731-23:50:53,336 nipype.workflow INFO:
	 [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function")
190731-23:50:53,379 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_msk".
190731-23:50:55,120 nipype.workflow INFO:
	 [Job 458] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_msk).
190731-23:50:55,125 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:55,285 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcompcor" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/tcompcor".
190731-23:50:55,340 nipype.workflow INFO:
	 [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor")
190731-23:50:56,493 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcompcor".
190731-23:50:57,121 nipype.workflow INFO:
	 [Job 459] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcompcor).
190731-23:50:57,127 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:57,261 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_metadata_fmt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/tcc_metadata_fmt".
190731-23:50:57,275 nipype.workflow INFO:
	 [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON")
190731-23:50:57,363 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_metadata_fmt".
190731-23:50:59,123 nipype.workflow INFO:
	 [Job 460] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.tcc_metadata_fmt).
190731-23:50:59,128 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:50:59,285 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/acc_tfm".
190731-23:50:59,300 nipype.workflow INFO:
	 [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/acc_roi/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_tpmsum_roi_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:50:59,599 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_tfm".
190731-23:51:01,124 nipype.workflow INFO:
	 [Job 461] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_tfm).
190731-23:51:01,129 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:01,293 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/acc_msk".
190731-23:51:01,320 nipype.workflow INFO:
	 [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function")
190731-23:51:01,369 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_msk".
190731-23:51:03,126 nipype.workflow INFO:
	 [Job 462] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_msk).
190731-23:51:03,131 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:03,285 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_compcor" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/merge_compcor".
190731-23:51:03,313 nipype.workflow INFO:
	 [Node] Running "merge_compcor" ("nipype.interfaces.utility.base.Merge")
190731-23:51:03,326 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_compcor".
190731-23:51:03,327 nipype.workflow INFO:
	 [Job 463] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_compcor).
190731-23:51:03,486 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/wm_tfm".
190731-23:51:03,504 nipype.workflow INFO:
	 [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/wm_roi/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_2_roi_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:51:03,761 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_tfm".
190731-23:51:05,127 nipype.workflow INFO:
	 [Job 466] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_tfm).
190731-23:51:05,133 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:05,290 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.rois_plot" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/rois_plot".
190731-23:51:05,327 nipype.workflow INFO:
	 [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot")
190731-23:51:07,130 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.64/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.rois_plot
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:16,441 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.rois_plot".
190731-23:51:17,138 nipype.workflow INFO:
	 [Job 464] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.rois_plot).
190731-23:51:17,143 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:17,287 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_bold_rois" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/ds_report_bold_rois".
190731-23:51:17,382 nipype.workflow INFO:
	 [Node] Running "ds_report_bold_rois" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:51:17,398 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_bold_rois".
190731-23:51:17,399 nipype.workflow INFO:
	 [Job 465] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_bold_rois).
190731-23:51:17,551 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/wm_msk".
190731-23:51:17,584 nipype.workflow INFO:
	 [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function")
190731-23:51:17,622 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_msk".
190731-23:51:19,139 nipype.workflow INFO:
	 [Job 467] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.wm_msk).
190731-23:51:19,145 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:19,310 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/csf_tfm".
190731-23:51:19,364 nipype.workflow INFO:
	 [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/csf_roi/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_roi_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt
190731-23:51:19,630 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_tfm".
190731-23:51:21,141 nipype.workflow INFO:
	 [Job 468] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_tfm).
190731-23:51:21,147 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:21,301 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/csf_msk".
190731-23:51:21,332 nipype.workflow INFO:
	 [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function")
190731-23:51:21,380 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_msk".
190731-23:51:23,143 nipype.workflow INFO:
	 [Job 469] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.csf_msk).
190731-23:51:23,149 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:23,305 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_rois" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/merge_rois".
190731-23:51:23,316 nipype.workflow INFO:
	 [Node] Running "merge_rois" ("nipype.interfaces.utility.base.Merge")
190731-23:51:23,332 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_rois".
190731-23:51:23,332 nipype.workflow INFO:
	 [Job 470] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_rois).
190731-23:51:23,488 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_rois_cc" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/merge_rois_cc".
190731-23:51:23,533 nipype.workflow INFO:
	 [Node] Running "merge_rois_cc" ("nipype.interfaces.utility.base.Merge")
190731-23:51:23,546 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_rois_cc".
190731-23:51:23,547 nipype.workflow INFO:
	 [Job 472] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_rois_cc).
190731-23:51:25,148 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:25,305 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.signals" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/signals".
190731-23:51:25,379 nipype.workflow INFO:
	 [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction")
190731-23:51:26,401 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.signals".
190731-23:51:27,147 nipype.workflow INFO:
	 [Job 471] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.signals).
190731-23:51:27,152 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:27,311 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acompcor" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/acompcor".
190731-23:51:27,336 nipype.workflow INFO:
	 [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor")
190731-23:51:28,897 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acompcor".
190731-23:51:29,147 nipype.workflow INFO:
	 [Job 473] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acompcor).
190731-23:51:29,153 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:29,288 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_compcor_metadata" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/merge_compcor_metadata".
190731-23:51:29,300 nipype.workflow INFO:
	 [Node] Running "merge_compcor_metadata" ("nipype.interfaces.utility.base.Merge")
190731-23:51:29,311 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_compcor_metadata".
190731-23:51:29,311 nipype.workflow INFO:
	 [Job 474] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_compcor_metadata).
190731-23:51:29,466 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_metadata_fmt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/acc_metadata_fmt".
190731-23:51:29,493 nipype.workflow INFO:
	 [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON")
190731-23:51:29,753 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_metadata_fmt".
190731-23:51:31,149 nipype.workflow INFO:
	 [Job 477] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.acc_metadata_fmt).
190731-23:51:31,155 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:31,309 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.compcor_plot" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/compcor_plot".
190731-23:51:31,363 nipype.workflow INFO:
	 [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot")
190731-23:51:32,294 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.compcor_plot".
190731-23:51:33,151 nipype.workflow INFO:
	 [Job 475] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.compcor_plot).
190731-23:51:33,157 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:33,310 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_compcor" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/ds_report_compcor".
190731-23:51:33,349 nipype.workflow INFO:
	 [Node] Running "ds_report_compcor" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:51:33,365 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_compcor".
190731-23:51:33,365 nipype.workflow INFO:
	 [Job 476] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_compcor).
190731-23:51:33,661 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_confound_metadata" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/merge_confound_metadata".
190731-23:51:33,969 nipype.workflow INFO:
	 [Node] Running "merge_confound_metadata" ("nipype.interfaces.utility.base.Merge")
190731-23:51:34,348 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_confound_metadata".
190731-23:51:34,348 nipype.workflow INFO:
	 [Job 478] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_confound_metadata).
190731-23:51:34,514 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.concat" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/concat".
190731-23:51:34,604 nipype.workflow INFO:
	 [Node] Running "concat" ("fmriprep.interfaces.confounds.GatherConfounds")
190731-23:51:34,851 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.concat".
190731-23:51:34,851 nipype.workflow INFO:
	 [Job 480] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.concat).
190731-23:51:35,155 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:35,459 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_confound_metadata2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/merge_confound_metadata2".
190731-23:51:35,765 nipype.workflow INFO:
	 [Node] Running "merge_confound_metadata2" ("niworkflows.interfaces.utils.DictMerge")
190731-23:51:36,59 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_confound_metadata2".
190731-23:51:36,60 nipype.workflow INFO:
	 [Job 479] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.merge_confound_metadata2).
190731-23:51:36,218 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.conf_corr_plot" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/conf_corr_plot".
190731-23:51:36,228 nipype.workflow INFO:
	 [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot")
190731-23:51:37,155 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.59/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.conf_corr_plot
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:42,92 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.conf_corr_plot".
190731-23:51:43,158 nipype.workflow INFO:
	 [Job 481] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.conf_corr_plot).
190731-23:51:43,163 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:43,418 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_conf_corr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/ds_report_conf_corr".
190731-23:51:43,454 nipype.workflow INFO:
	 [Node] Running "ds_report_conf_corr" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:51:43,470 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_conf_corr".
190731-23:51:43,471 nipype.workflow INFO:
	 [Job 482] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.ds_report_conf_corr).
190731-23:51:43,629 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.model_expansion" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/model_expansion".
190731-23:51:43,686 nipype.workflow INFO:
	 [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel")
190731-23:51:43,916 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.model_expansion".
190731-23:51:45,159 nipype.workflow INFO:
	 [Job 483] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.model_expansion).
190731-23:51:45,165 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:45,321 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.spike_regressors" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_confounds_wf/spike_regressors".
190731-23:51:45,422 nipype.workflow INFO:
	 [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors")
190731-23:51:45,556 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.spike_regressors".
190731-23:51:47,161 nipype.workflow INFO:
	 [Job 484] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_confounds_wf.spike_regressors).
190731-23:51:47,167 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:47,434 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_confounds" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/func_derivatives_wf/ds_confounds".
190731-23:51:47,642 nipype.workflow INFO:
	 [Node] Running "ds_confounds" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:51:47,696 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_confounds".
190731-23:51:47,696 nipype.workflow INFO:
	 [Job 485] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_confounds).
190731-23:51:47,824 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.summary" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/summary".
190731-23:51:47,906 nipype.workflow INFO:
	 [Node] Running "summary" ("fmriprep.interfaces.reports.FunctionalSummary")
190731-23:51:47,922 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.summary".
190731-23:51:47,922 nipype.workflow INFO:
	 [Job 486] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.summary).
190731-23:51:49,165 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190731-23:51:49,327 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.ds_report_summary" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/ds_report_summary".
190731-23:51:49,372 nipype.workflow INFO:
	 [Node] Running "ds_report_summary" ("fmriprep.interfaces.DerivativesDataSink")
190731-23:51:49,389 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.ds_report_summary".
190731-23:51:49,389 nipype.workflow INFO:
	 [Job 487] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.ds_report_summary).
190731-23:51:51,164 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 6.79/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration
190801-00:24:46,371 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration".
190801-00:24:46,944 nipype.workflow INFO:
	 [Job 253] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.registration).
190801-00:24:46,951 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 8 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:24:47,248 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl_inv_warp".
190801-00:24:47,309 nipype.workflow INFO:
	 [Node] Running "ds_t1_tpl_inv_warp" ("smriprep.interfaces.DerivativesDataSink")
190801-00:24:47,332 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp".
190801-00:24:47,332 nipype.workflow INFO:
	 [Job 254] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_inv_warp).
190801-00:24:47,501 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl_warp".
190801-00:24:47,537 nipype.workflow INFO:
	 [Node] Running "ds_t1_tpl_warp" ("smriprep.interfaces.DerivativesDataSink")
190801-00:24:47,558 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp".
190801-00:24:47,558 nipype.workflow INFO:
	 [Job 255] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl_warp).
190801-00:24:47,736 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_mask".
190801-00:24:47,758 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_moving".
190801-00:24:47,779 nipype.workflow INFO:
	 [Node] Running "tpl_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz --interpolation MultiLabel --output 09_relabel_wm_mask_xform_trans.nii.gz --reference-image /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5
190801-00:24:47,800 nipype.workflow INFO:
	 [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CC110069_T1w_ras_valid_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-CC110069_T1w_ras_valid_corrected_xform_trans.nii.gz --reference-image /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5
190801-00:24:47,813 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_seg".
190801-00:24:47,833 nipype.workflow INFO:
	 [Node] Running "tpl_seg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform_seg.nii.gz --interpolation MultiLabel --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_seg_trans.nii.gz --reference-image /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5
190801-00:24:48,949 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 5 jobs ready. Free memory (GB): 8.19/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask
190801-00:24:49,119 nipype.workflow INFO:
	 [Node] Setting-up "_tpl_tpms0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms0".
190801-00:24:49,121 nipype.workflow INFO:
	 [Node] Setting-up "_tpl_tpms1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms1".
190801-00:24:49,123 nipype.workflow INFO:
	 [Node] Setting-up "_tpl_tpms2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms2".
190801-00:24:49,134 nipype.workflow INFO:
	 [Node] Running "_tpl_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0.nii.gz --interpolation Gaussian --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_0_trans.nii.gz --reference-image /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5
190801-00:24:49,139 nipype.workflow INFO:
	 [Node] Running "_tpl_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_1.nii.gz --interpolation Gaussian --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_1_trans.nii.gz --reference-image /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5
190801-00:24:49,161 nipype.workflow INFO:
	 [Node] Running "_tpl_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/t1_seg/sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_2.nii.gz --interpolation Gaussian --output sub-CC110069_T1w_ras_valid_corrected_masked_xform_prob_2_trans.nii.gz --reference-image /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5
190801-00:24:50,949 nipype.workflow INFO:
	 [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 7.59/8.79, Free processors: 2/8.
                     Currently running:
                       * _tpl_tpms2
                       * _tpl_tpms1
                       * _tpl_tpms0
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask
190801-00:25:49,339 nipype.workflow INFO:
	 [Node] Finished "_tpl_tpms2".
190801-00:25:51,1 nipype.workflow INFO:
	 [Job 502] Completed (_tpl_tpms2).
190801-00:25:51,5 nipype.workflow INFO:
	 [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 3/8.
                     Currently running:
                       * _tpl_tpms1
                       * _tpl_tpms0
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask
190801-00:25:55,460 nipype.workflow INFO:
	 [Node] Finished "_tpl_tpms0".
190801-00:25:55,962 nipype.workflow INFO:
	 [Node] Finished "_tpl_tpms1".
190801-00:25:57,7 nipype.workflow INFO:
	 [Job 500] Completed (_tpl_tpms0).
190801-00:25:57,8 nipype.workflow INFO:
	 [Job 501] Completed (_tpl_tpms1).
190801-00:25:57,11 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 8.19/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask
190801-00:25:57,175 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms".
190801-00:25:57,186 nipype.workflow INFO:
	 [Node] Setting-up "_tpl_tpms0" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms0".
190801-00:25:57,189 nipype.workflow INFO:
	 [Node] Cached "_tpl_tpms0" - collecting precomputed outputs
190801-00:25:57,189 nipype.workflow INFO:
	 [Node] "_tpl_tpms0" found cached.
190801-00:25:57,190 nipype.workflow INFO:
	 [Node] Setting-up "_tpl_tpms1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms1".
190801-00:25:57,193 nipype.workflow INFO:
	 [Node] Cached "_tpl_tpms1" - collecting precomputed outputs
190801-00:25:57,193 nipype.workflow INFO:
	 [Node] "_tpl_tpms1" found cached.
190801-00:25:57,195 nipype.workflow INFO:
	 [Node] Setting-up "_tpl_tpms2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_tpms/mapflow/_tpl_tpms2".
190801-00:25:57,198 nipype.workflow INFO:
	 [Node] Cached "_tpl_tpms2" - collecting precomputed outputs
190801-00:25:57,198 nipype.workflow INFO:
	 [Node] "_tpl_tpms2" found cached.
190801-00:25:57,206 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms".
190801-00:25:59,10 nipype.workflow INFO:
	 [Job 269] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_tpms).
190801-00:25:59,17 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 8.19/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask
190801-00:25:59,179 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_tpms".
190801-00:25:59,231 nipype.workflow INFO:
	 [Node] Running "ds_tpl_tpms" ("smriprep.interfaces.DerivativesDataSink")
190801-00:26:02,659 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms".
190801-00:26:02,659 nipype.workflow INFO:
	 [Job 270] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_tpms).
190801-00:26:02,798 nipype.workflow INFO:
	 [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 8.19/8.79, Free processors: 5/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask
190801-00:26:08,655 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving".
190801-00:26:08,804 nipype.workflow INFO:
	 [Job 258] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_moving).
190801-00:26:08,811 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask
190801-00:26:08,971 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_t1_tpl".
190801-00:26:09,39 nipype.workflow INFO:
	 [Node] Running "ds_t1_tpl" ("smriprep.interfaces.DerivativesDataSink")
190801-00:26:11,270 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl".
190801-00:26:11,270 nipype.workflow INFO:
	 [Job 259] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_tpl).
190801-00:26:11,417 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask
190801-00:28:03,971 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask".
190801-00:28:05,521 nipype.workflow INFO:
	 [Job 256] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_mask).
190801-00:28:05,528 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
190801-00:28:05,693 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_mask".
190801-00:28:05,732 nipype.workflow INFO:
	 [Node] Running "ds_tpl_mask" ("smriprep.interfaces.DerivativesDataSink")
190801-00:28:06,490 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask".
190801-00:28:06,491 nipype.workflow INFO:
	 [Job 257] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_mask).
190801-00:28:06,624 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_msk" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/norm_msk".
190801-00:28:06,640 nipype.workflow INFO:
	 [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function")
190801-00:28:07,527 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 8.39/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_msk
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
190801-00:28:08,499 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_msk".
190801-00:28:09,526 nipype.workflow INFO:
	 [Job 260] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_msk).
190801-00:28:09,532 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg
190801-00:28:09,694 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_rpt" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/norm_rpt".
190801-00:28:09,742 nipype.workflow INFO:
	 [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT")
190801-00:28:10,467 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg".
190801-00:28:11,527 nipype.workflow INFO:
	 [Job 271] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.tpl_seg).
190801-00:28:11,534 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 8.69/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_rpt
190801-00:28:11,706 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.outputnode" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/outputnode".
190801-00:28:11,708 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/lut_tpl_seg".
190801-00:28:11,722 nipype.workflow INFO:
	 [Node] Running "lut_tpl_seg" ("nipype.interfaces.utility.wrappers.Function")
190801-00:28:11,722 nipype.workflow INFO:
	 [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface")
190801-00:28:11,736 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.outputnode".
190801-00:28:12,43 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg".
190801-00:28:13,529 nipype.workflow INFO:
	 [Job 272] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.outputnode).
190801-00:28:13,532 nipype.workflow INFO:
	 [Job 281] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.lut_tpl_seg).
190801-00:28:13,539 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 8.69/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_rpt
190801-00:28:13,699 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.select_std" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/select_std".
190801-00:28:13,847 nipype.workflow INFO:
	 [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect")
190801-00:28:13,863 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.select_std".
190801-00:28:13,863 nipype.workflow INFO:
	 [Job 273] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.select_std).
190801-00:28:14,8 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.select_std" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/select_std".
190801-00:28:14,60 nipype.workflow INFO:
	 [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect")
190801-00:28:14,81 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.select_std".
190801-00:28:14,81 nipype.workflow INFO:
	 [Job 276] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.select_std).
190801-00:28:14,238 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.select_std" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/carpetplot_wf/select_std".
190801-00:28:14,261 nipype.workflow INFO:
	 [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect")
190801-00:28:14,282 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.select_std".
190801-00:28:14,282 nipype.workflow INFO:
	 [Job 279] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.select_std).
190801-00:28:14,440 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.select_std" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/carpetplot_wf/select_std".
190801-00:28:14,533 nipype.workflow INFO:
	 [Node] Running "select_std" ("niworkflows.interfaces.utility.KeySelect")
190801-00:28:14,549 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.select_std".
190801-00:28:14,549 nipype.workflow INFO:
	 [Job 280] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.select_std).
190801-00:28:14,711 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/ds_tpl_seg".
190801-00:28:14,728 nipype.workflow INFO:
	 [Node] Running "ds_tpl_seg" ("smriprep.interfaces.DerivativesDataSink")
190801-00:28:16,753 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg".
190801-00:28:16,753 nipype.workflow INFO:
	 [Job 282] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_derivatives_wf.ds_tpl_seg).
190801-00:28:16,980 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 6.62/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
                       * fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_rpt
190801-00:28:16,992 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_to_t1w_transform".
190801-00:28:17,94 nipype.workflow INFO:
	 [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
190801-00:28:21,517 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_rpt".
190801-00:28:22,983 nipype.workflow INFO:
	 [Job 261] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.norm_rpt).
190801-00:28:22,989 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:23,155 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/ds_t1_2_tpl_report".
190801-00:28:23,189 nipype.workflow INFO:
	 [Node] Running "ds_t1_2_tpl_report" ("smriprep.interfaces.DerivativesDataSink")
190801-00:28:23,206 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report".
190801-00:28:23,206 nipype.workflow INFO:
	 [Job 262] Completed (fmriprep_wf.single_subject_CC110069_wf.anat_preproc_wf.anat_norm_wf.ds_t1_2_tpl_report).
190801-00:28:23,356 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.select_tpl" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/select_tpl".
190801-00:28:23,389 nipype.workflow INFO:
	 [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function")
190801-00:28:23,401 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.select_tpl".
190801-00:28:23,401 nipype.workflow INFO:
	 [Job 274] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.select_tpl).
190801-00:28:23,529 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.select_tpl" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/select_tpl".
190801-00:28:23,560 nipype.workflow INFO:
	 [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function")
190801-00:28:23,577 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.select_tpl".
190801-00:28:23,577 nipype.workflow INFO:
	 [Job 277] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.select_tpl).
190801-00:28:23,727 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.merge_xforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge_xforms".
190801-00:28:23,779 nipype.workflow INFO:
	 [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge")
190801-00:28:23,796 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.merge_xforms".
190801-00:28:23,796 nipype.workflow INFO:
	 [Job 300] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.merge_xforms).
190801-00:28:23,933 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.mask_merge_tfms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_merge_tfms".
190801-00:28:23,970 nipype.workflow INFO:
	 [Node] Running "mask_merge_tfms" ("nipype.interfaces.utility.base.Merge")
190801-00:28:23,985 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.mask_merge_tfms".
190801-00:28:23,985 nipype.workflow INFO:
	 [Job 307] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.mask_merge_tfms).
190801-00:28:24,144 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.mrg_xfms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/carpetplot_wf/mrg_xfms".
190801-00:28:24,186 nipype.workflow INFO:
	 [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge")
190801-00:28:24,199 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.mrg_xfms".
190801-00:28:24,984 nipype.workflow INFO:
	 [Job 353] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.mrg_xfms).
190801-00:28:24,988 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:25,119 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref".
190801-00:28:25,152 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
190801-00:28:25,415 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.gen_ref".
190801-00:28:26,988 nipype.workflow INFO:
	 [Job 275] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.gen_ref).
190801-00:28:26,993 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:27,174 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref".
190801-00:28:27,200 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
190801-00:28:27,721 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.gen_ref".
190801-00:28:28,987 nipype.workflow INFO:
	 [Job 278] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.gen_ref).
190801-00:28:28,993 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:29,155 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.mask_std_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm".
190801-00:28:29,186 nipype.workflow INFO:
	 [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd/affine.txt
190801-00:28:30,992 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 5.72/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.mask_std_tfm
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:33,538 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.mask_std_tfm".
190801-00:28:34,993 nipype.workflow INFO:
	 [Job 308] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.mask_std_tfm).
190801-00:28:35,0 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:35,139 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_mask_std" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_mask_std".
190801-00:28:35,191 nipype.workflow INFO:
	 [Node] Running "ds_bold_mask_std" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:28:35,275 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_mask_std".
190801-00:28:35,275 nipype.workflow INFO:
	 [Job 309] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_mask_std).
190801-00:28:35,430 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate".
190801-00:28:35,519 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz
190801-00:28:35,971 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190801-00:28:36,995 nipype.workflow INFO:
	 [Job 310] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190801-00:28:37,0 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:37,153 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.resample_parc" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/carpetplot_wf/resample_parc".
190801-00:28:37,181 nipype.workflow INFO:
	 [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5
190801-00:28:38,998 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.resample_parc
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:41,482 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.resample_parc".
190801-00:28:42,999 nipype.workflow INFO:
	 [Job 354] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.resample_parc).
190801-00:28:43,6 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:43,143 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.conf_plot" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/carpetplot_wf/conf_plot".
190801-00:28:43,180 nipype.workflow INFO:
	 [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary")
190801-00:28:45,4 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.62/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.conf_plot
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:46,634 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.conf_plot".
190801-00:28:47,2 nipype.workflow INFO:
	 [Job 386] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.conf_plot).
190801-00:28:47,6 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:47,152 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.ds_report_bold_conf" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/carpetplot_wf/ds_report_bold_conf".
190801-00:28:47,184 nipype.workflow INFO:
	 [Node] Running "ds_report_bold_conf" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:28:47,217 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.ds_report_bold_conf".
190801-00:28:47,217 nipype.workflow INFO:
	 [Job 387] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.carpetplot_wf.ds_report_bold_conf).
190801-00:28:47,374 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge_xforms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge_xforms".
190801-00:28:47,404 nipype.workflow INFO:
	 [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge")
190801-00:28:47,419 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge_xforms".
190801-00:28:47,419 nipype.workflow INFO:
	 [Job 402] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge_xforms).
190801-00:28:47,570 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.mask_merge_tfms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_merge_tfms".
190801-00:28:47,645 nipype.workflow INFO:
	 [Node] Running "mask_merge_tfms" ("nipype.interfaces.utility.base.Merge")
190801-00:28:47,658 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.mask_merge_tfms".
190801-00:28:47,659 nipype.workflow INFO:
	 [Job 409] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.mask_merge_tfms).
190801-00:28:47,812 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.mrg_xfms" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/carpetplot_wf/mrg_xfms".
190801-00:28:47,905 nipype.workflow INFO:
	 [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge")
190801-00:28:47,918 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.mrg_xfms".
190801-00:28:49,5 nipype.workflow INFO:
	 [Job 455] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.mrg_xfms).
190801-00:28:49,10 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:49,163 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.mask_std_tfm" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm".
190801-00:28:49,196 nipype.workflow INFO:
	 [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/gen_ref/tpl-MNI152NLin2009cAsym_res-01_T1w_reference.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_fwd/affine.txt
190801-00:28:51,10 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 5.72/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.mask_std_tfm
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:53,463 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.mask_std_tfm".
190801-00:28:55,10 nipype.workflow INFO:
	 [Job 410] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.mask_std_tfm).
190801-00:28:55,17 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:55,183 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_mask_std" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_mask_std".
190801-00:28:55,231 nipype.workflow INFO:
	 [Node] Running "ds_bold_mask_std" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:28:55,332 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_mask_std".
190801-00:28:55,332 nipype.workflow INFO:
	 [Job 411] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_mask_std).
190801-00:28:55,491 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate".
190801-00:28:55,558 nipype.workflow INFO:
	 [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz
190801-00:28:55,976 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
190801-00:28:57,11 nipype.workflow INFO:
	 [Job 412] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate).
190801-00:28:57,16 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:28:57,167 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.resample_parc" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/carpetplot_wf/resample_parc".
190801-00:28:57,181 nipype.workflow INFO:
	 [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/wbreilly/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_reg_wf/fsl_bbr_wf/fsl2itk_inv/affine.txt --transform /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5
190801-00:28:59,14 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.resample_parc
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:29:00,669 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.resample_parc".
190801-00:29:01,13 nipype.workflow INFO:
	 [Job 456] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.resample_parc).
190801-00:29:01,19 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:29:01,179 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.conf_plot" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/carpetplot_wf/conf_plot".
190801-00:29:01,194 nipype.workflow INFO:
	 [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary")
190801-00:29:03,18 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.62/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.conf_plot
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:29:03,70 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform".
190801-00:29:03,805 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.conf_plot".
190801-00:29:05,18 nipype.workflow INFO:
	 [Job 325] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_to_t1w_transform).
190801-00:29:05,21 nipype.workflow INFO:
	 [Job 488] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.conf_plot).
190801-00:29:05,28 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:29:05,256 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform".
190801-00:29:05,284 nipype.workflow INFO:
	 [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
190801-00:29:05,292 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.merge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/merge".
190801-00:29:05,320 nipype.workflow INFO:
	 [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
190801-00:29:07,22 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.62/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.merge
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:13,63 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.merge".
190801-00:29:15,27 nipype.workflow INFO:
	 [Job 326] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.merge).
190801-00:29:15,33 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:15,184 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_t1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/func_derivatives_wf/ds_bold_t1".
190801-00:29:15,195 nipype.workflow INFO:
	 [Node] Running "ds_bold_t1" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:29:23,957 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_t1".
190801-00:29:23,957 nipype.workflow INFO:
	 [Job 327] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_t1).
190801-00:29:24,175 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/validate".
190801-00:29:24,183 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.71/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.validate
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:24,187 nipype.workflow INFO:
	 [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
190801-00:29:24,205 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.validate".
190801-00:29:26,180 nipype.workflow INFO:
	 [Job 328] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.validate).
190801-00:29:26,184 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:26,312 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref".
190801-00:29:26,322 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
190801-00:29:26,758 nipype.interface INFO:
	 stderr 2019-08-01T00:29:26.758644:++ 3dvolreg: AFNI version=AFNI_17.1.10 (Jun  6 2017) [64-bit]
190801-00:29:26,759 nipype.interface INFO:
	 stderr 2019-08-01T00:29:26.759685:++ Authored by: RW Cox
190801-00:29:26,765 nipype.interface INFO:
	 stderr 2019-08-01T00:29:26.765035:++ Coarse del was 10, replaced with 3
190801-00:29:28,186 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 5.72/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:46,687 nipype.interface INFO:
	 stderr 2019-08-01T00:29:46.687190:++ Max displacement in automask = 0.16 (mm) at sub-brick 2
190801-00:29:46,687 nipype.interface INFO:
	 stderr 2019-08-01T00:29:46.687190:++ Max delta displ  in automask = 0.15 (mm) at sub-brick 3
190801-00:29:47,577 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref".
190801-00:29:48,201 nipype.workflow INFO:
	 [Job 329] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref).
190801-00:29:48,207 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:48,356 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/calc_dummy_scans".
190801-00:29:48,367 nipype.workflow INFO:
	 [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function")
190801-00:29:48,380 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans".
190801-00:29:48,380 nipype.workflow INFO:
	 [Job 330] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans).
190801-00:29:48,532 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr".
190801-00:29:48,542 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190801-00:29:48,596 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190801-00:29:48,597 nipype.workflow INFO:
	 [Job 335] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190801-00:29:48,750 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.ds_report_bold_conf" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/carpetplot_wf/ds_report_bold_conf".
190801-00:29:48,760 nipype.workflow INFO:
	 [Node] Running "ds_report_bold_conf" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:29:48,777 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.ds_report_bold_conf".
190801-00:29:48,777 nipype.workflow INFO:
	 [Job 489] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.carpetplot_wf.ds_report_bold_conf).
190801-00:29:50,206 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:50,359 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
190801-00:29:50,392 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz
190801-00:29:52,205 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:52,218 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190801-00:29:54,205 nipype.workflow INFO:
	 [Job 336] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190801-00:29:54,211 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:54,361 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_t1_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/func_derivatives_wf/ds_bold_t1_ref".
190801-00:29:54,390 nipype.workflow INFO:
	 [Node] Running "ds_bold_t1_ref" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:29:54,502 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_t1_ref".
190801-00:29:54,502 nipype.workflow INFO:
	 [Job 337] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_t1_ref).
190801-00:29:54,654 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
190801-00:29:54,666 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
190801-00:29:56,210 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:56,605 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190801-00:29:58,208 nipype.workflow INFO:
	 [Job 338] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190801-00:29:58,215 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:29:58,382 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
190801-00:29:58,427 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
190801-00:29:58,890 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190801-00:30:00,209 nipype.workflow INFO:
	 [Job 339] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190801-00:30:00,214 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:30:00,366 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
190801-00:30:00,429 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
190801-00:30:00,606 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190801-00:30:02,211 nipype.workflow INFO:
	 [Job 340] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190801-00:30:02,217 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:30:02,367 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
190801-00:30:02,433 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
190801-00:30:04,215 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:30:25,132 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
190801-00:30:26,233 nipype.workflow INFO:
	 [Job 341] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
190801-00:30:26,239 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:30:26,385 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
190801-00:30:26,398 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190801-00:30:26,458 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190801-00:30:28,235 nipype.workflow INFO:
	 [Job 342] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190801-00:30:28,241 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:30:28,402 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
190801-00:30:28,469 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
190801-00:30:28,707 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190801-00:30:30,237 nipype.workflow INFO:
	 [Job 343] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190801-00:30:30,242 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:30:30,410 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
190801-00:30:30,440 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190801-00:30:30,479 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190801-00:30:32,239 nipype.workflow INFO:
	 [Job 344] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190801-00:30:32,244 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:30:32,396 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
190801-00:30:32,409 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
190801-00:30:32,539 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190801-00:30:33,281 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform".
190801-00:30:34,242 nipype.workflow INFO:
	 [Job 301] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_to_std_transform).
190801-00:30:34,245 nipype.workflow INFO:
	 [Job 345] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190801-00:30:34,252 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:30:34,472 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
190801-00:30:34,489 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
190801-00:30:34,650 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190801-00:30:34,856 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.merge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge".
190801-00:30:34,938 nipype.workflow INFO:
	 [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
190801-00:30:36,244 nipype.workflow INFO:
	 [Job 346] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190801-00:30:36,250 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.merge
190801-00:30:36,506 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/bold_to_std_transform".
190801-00:30:36,610 nipype.workflow INFO:
	 [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
190801-00:30:38,246 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.42/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.merge
190801-00:30:53,893 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.merge".
190801-00:30:54,258 nipype.workflow INFO:
	 [Job 302] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.merge).
190801-00:30:54,261 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:30:54,391 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_std" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_std".
190801-00:30:54,419 nipype.workflow INFO:
	 [Node] Running "ds_bold_std" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:31:13,699 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_std".
190801-00:31:13,699 nipype.workflow INFO:
	 [Job 303] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_std).
190801-00:31:13,977 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate".
190801-00:31:13,984 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.71/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.validate
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:31:14,83 nipype.workflow INFO:
	 [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
190801-00:31:14,113 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.validate".
190801-00:31:15,981 nipype.workflow INFO:
	 [Job 304] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.validate).
190801-00:31:15,984 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:31:16,113 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref".
190801-00:31:16,154 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
190801-00:31:17,654 nipype.interface INFO:
	 stderr 2019-08-01T00:31:17.654395:++ 3dvolreg: AFNI version=AFNI_17.1.10 (Jun  6 2017) [64-bit]
190801-00:31:17,654 nipype.interface INFO:
	 stderr 2019-08-01T00:31:17.654791:++ Authored by: RW Cox
190801-00:31:17,657 nipype.interface INFO:
	 stderr 2019-08-01T00:31:17.657714:++ Coarse del was 10, replaced with 4
190801-00:31:17,986 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 5.72/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:31:52,559 nipype.interface INFO:
	 stderr 2019-08-01T00:31:52.559489:++ Max displacement in automask = 0.16 (mm) at sub-brick 2
190801-00:31:52,559 nipype.interface INFO:
	 stderr 2019-08-01T00:31:52.559849:++ Max delta displ  in automask = 0.15 (mm) at sub-brick 3
190801-00:31:54,457 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref".
190801-00:31:56,19 nipype.workflow INFO:
	 [Job 305] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.gen_ref).
190801-00:31:56,25 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:31:56,173 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/calc_dummy_scans".
190801-00:31:56,241 nipype.workflow INFO:
	 [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function")
190801-00:31:56,254 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans".
190801-00:31:56,254 nipype.workflow INFO:
	 [Job 306] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans).
190801-00:31:56,406 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr".
190801-00:31:56,441 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190801-00:31:56,497 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190801-00:31:56,497 nipype.workflow INFO:
	 [Job 311] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190801-00:31:58,25 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:31:58,185 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct".
190801-00:31:58,250 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz
190801-00:32:00,26 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform
190801-00:32:00,565 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190801-00:32:00,741 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform".
190801-00:32:02,26 nipype.workflow INFO:
	 [Job 403] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_to_std_transform).
190801-00:32:02,29 nipype.workflow INFO:
	 [Job 312] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190801-00:32:02,36 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:32:02,226 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.outputnode" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/outputnode".
190801-00:32:02,229 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_std_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_std_ref".
190801-00:32:02,239 nipype.workflow INFO:
	 [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface")
190801-00:32:02,259 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.outputnode".
190801-00:32:02,271 nipype.workflow INFO:
	 [Node] Running "ds_bold_std_ref" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:32:02,525 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_std_ref".
190801-00:32:02,525 nipype.workflow INFO:
	 [Job 314] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.func_derivatives_wf.ds_bold_std_ref).
190801-00:32:02,676 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass".
190801-00:32:02,693 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
190801-00:32:02,721 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/_key_MNI152NLin2009cAsym/merge".
190801-00:32:02,773 nipype.workflow INFO:
	 [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
190801-00:32:04,27 nipype.workflow INFO:
	 [Job 313] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.outputnode).
190801-00:32:04,32 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.29/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
190801-00:32:04,230 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190801-00:32:06,27 nipype.workflow INFO:
	 [Job 315] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190801-00:32:06,32 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge
190801-00:32:06,207 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate".
190801-00:32:06,251 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
190801-00:32:06,845 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190801-00:32:08,30 nipype.workflow INFO:
	 [Job 316] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190801-00:32:08,37 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge
190801-00:32:08,225 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask".
190801-00:32:08,253 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
190801-00:32:08,442 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190801-00:32:10,32 nipype.workflow INFO:
	 [Job 317] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190801-00:32:10,37 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge
190801-00:32:10,218 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize".
190801-00:32:10,284 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz
190801-00:32:12,36 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 8.29/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge
190801-00:32:28,118 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge".
190801-00:32:30,45 nipype.workflow INFO:
	 [Job 404] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.merge).
190801-00:32:30,51 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190801-00:32:30,203 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_std" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_std".
190801-00:32:30,230 nipype.workflow INFO:
	 [Node] Running "ds_bold_std" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:32:37,249 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
190801-00:32:45,830 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_std".
190801-00:32:45,831 nipype.workflow INFO:
	 [Job 405] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_std).
190801-00:32:46,0 nipype.workflow INFO:
	 [Job 318] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
190801-00:32:46,3 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/validate".
190801-00:32:46,7 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.78/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.validate
190801-00:32:46,96 nipype.workflow INFO:
	 [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
190801-00:32:46,137 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.validate".
190801-00:32:46,173 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize".
190801-00:32:46,201 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190801-00:32:46,320 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190801-00:32:48,2 nipype.workflow INFO:
	 [Job 406] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.validate).
190801-00:32:48,5 nipype.workflow INFO:
	 [Job 319] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190801-00:32:48,12 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:32:48,199 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass".
190801-00:32:48,202 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref".
190801-00:32:48,249 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz
190801-00:32:48,266 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
190801-00:32:48,547 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190801-00:32:49,845 nipype.interface INFO:
	 stderr 2019-08-01T00:32:49.845361:++ 3dvolreg: AFNI version=AFNI_17.1.10 (Jun  6 2017) [64-bit]
190801-00:32:49,845 nipype.interface INFO:
	 stderr 2019-08-01T00:32:49.845361:++ Authored by: RW Cox
190801-00:32:49,849 nipype.interface INFO:
	 stderr 2019-08-01T00:32:49.849069:++ Coarse del was 10, replaced with 4
190801-00:32:50,4 nipype.workflow INFO:
	 [Job 320] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190801-00:32:50,11 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.gen_ref
190801-00:32:50,189 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2".
190801-00:32:50,265 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190801-00:32:50,339 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190801-00:32:52,6 nipype.workflow INFO:
	 [Job 321] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190801-00:32:52,12 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.gen_ref
190801-00:32:52,176 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks".
190801-00:32:52,221 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
190801-00:32:52,393 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190801-00:32:54,7 nipype.workflow INFO:
	 [Job 322] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190801-00:32:54,14 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.gen_ref
190801-00:32:54,177 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask".
190801-00:32:54,192 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Rest_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz
190801-00:32:54,371 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190801-00:32:56,8 nipype.workflow INFO:
	 [Job 323] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Rest_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190801-00:32:56,15 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.gen_ref
190801-00:32:56,241 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_to_t1w_transform".
190801-00:32:56,278 nipype.workflow INFO:
	 [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
190801-00:32:58,12 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 5.72/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.gen_ref
190801-00:33:18,303 nipype.interface INFO:
	 stderr 2019-08-01T00:33:18.303152:++ Max displacement in automask = 0.17 (mm) at sub-brick 2
190801-00:33:18,303 nipype.interface INFO:
	 stderr 2019-08-01T00:33:18.303412:++ Max delta displ  in automask = 0.15 (mm) at sub-brick 3
190801-00:33:19,997 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.gen_ref".
190801-00:33:20,29 nipype.workflow INFO:
	 [Job 407] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.gen_ref).
190801-00:33:20,34 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:20,183 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/calc_dummy_scans".
190801-00:33:20,247 nipype.workflow INFO:
	 [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function")
190801-00:33:20,260 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans".
190801-00:33:20,260 nipype.workflow INFO:
	 [Job 408] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans).
190801-00:33:20,412 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr".
190801-00:33:20,452 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190801-00:33:20,507 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190801-00:33:20,508 nipype.workflow INFO:
	 [Job 413] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190801-00:33:22,34 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:22,193 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct".
190801-00:33:22,227 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/_key_MNI152NLin2009cAsym/gen_ref/ref_bold.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz
190801-00:33:24,34 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:24,338 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190801-00:33:26,33 nipype.workflow INFO:
	 [Job 414] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190801-00:33:26,40 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:26,202 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.outputnode" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/outputnode".
190801-00:33:26,275 nipype.workflow INFO:
	 [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface")
190801-00:33:26,290 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.outputnode".
190801-00:33:28,35 nipype.workflow INFO:
	 [Job 415] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.outputnode).
190801-00:33:28,41 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:28,192 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_std_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/func_derivatives_wf/_key_MNI152NLin2009cAsym/ds_bold_std_ref".
190801-00:33:28,230 nipype.workflow INFO:
	 [Node] Running "ds_bold_std_ref" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:33:28,439 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_std_ref".
190801-00:33:28,439 nipype.workflow INFO:
	 [Job 416] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_std_ref).
190801-00:33:28,592 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass".
190801-00:33:28,619 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/n4_correct/ref_bold_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
190801-00:33:30,40 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:30,381 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190801-00:33:32,39 nipype.workflow INFO:
	 [Job 417] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190801-00:33:32,44 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:32,178 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate".
190801-00:33:32,200 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
190801-00:33:32,659 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190801-00:33:34,39 nipype.workflow INFO:
	 [Job 418] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190801-00:33:34,44 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:34,184 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask".
190801-00:33:34,233 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
190801-00:33:34,409 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190801-00:33:36,43 nipype.workflow INFO:
	 [Job 419] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190801-00:33:36,48 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 6.72/8.79, Free processors: 1/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:36,199 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize".
190801-00:33:36,233 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/unifize/ref_bold_corrected_brain_masked.nii.gz
190801-00:33:38,47 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 6.52/8.79, Free processors: 0/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform
190801-00:33:47,93 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform".
190801-00:33:48,53 nipype.workflow INFO:
	 [Job 427] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_to_t1w_transform).
190801-00:33:48,59 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190801-00:33:48,353 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.merge" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/merge".
190801-00:33:48,383 nipype.workflow INFO:
	 [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
190801-00:33:50,58 nipype.workflow INFO:
	 [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 8.49/8.79, Free processors: 6/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.merge
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190801-00:33:57,208 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.merge".
190801-00:33:58,59 nipype.workflow INFO:
	 [Job 428] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.merge).
190801-00:33:58,65 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190801-00:33:58,217 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_t1" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/func_derivatives_wf/ds_bold_t1".
190801-00:33:58,295 nipype.workflow INFO:
	 [Node] Running "ds_bold_t1" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:34:04,506 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
190801-00:34:05,795 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_t1".
190801-00:34:05,795 nipype.workflow INFO:
	 [Job 429] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_t1).
190801-00:34:05,950 nipype.workflow INFO:
	 [Job 420] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
190801-00:34:05,955 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/validate".
190801-00:34:05,958 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 8.78/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.validate
190801-00:34:06,5 nipype.workflow INFO:
	 [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
190801-00:34:06,26 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.validate".
190801-00:34:06,139 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize".
190801-00:34:06,154 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190801-00:34:06,254 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190801-00:34:07,952 nipype.workflow INFO:
	 [Job 430] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.validate).
190801-00:34:07,955 nipype.workflow INFO:
	 [Job 421] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190801-00:34:07,961 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:08,145 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass".
190801-00:34:08,148 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref".
190801-00:34:08,186 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_second_pass/uni_xform.nii.gz
190801-00:34:08,202 nipype.workflow INFO:
	 [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
190801-00:34:08,494 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190801-00:34:08,676 nipype.interface INFO:
	 stderr 2019-08-01T00:34:08.676437:++ 3dvolreg: AFNI version=AFNI_17.1.10 (Jun  6 2017) [64-bit]
190801-00:34:08,676 nipype.interface INFO:
	 stderr 2019-08-01T00:34:08.676437:++ Authored by: RW Cox
190801-00:34:08,680 nipype.interface INFO:
	 stderr 2019-08-01T00:34:08.680740:++ Coarse del was 10, replaced with 3
190801-00:34:09,954 nipype.workflow INFO:
	 [Job 422] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190801-00:34:09,961 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref
190801-00:34:10,125 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2".
190801-00:34:10,150 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190801-00:34:10,220 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190801-00:34:11,956 nipype.workflow INFO:
	 [Job 423] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190801-00:34:11,963 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref
190801-00:34:12,125 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks".
190801-00:34:12,169 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
190801-00:34:12,332 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190801-00:34:13,958 nipype.workflow INFO:
	 [Job 424] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190801-00:34:13,964 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref
190801-00:34:14,107 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask".
190801-00:34:14,182 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_key_MNI152NLin2009cAsym/apply_mask/uni_xform_masked.nii.gz
190801-00:34:14,340 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190801-00:34:15,960 nipype.workflow INFO:
	 [Job 425] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190801-00:34:15,966 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 7.79/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref
190801-00:34:20,594 nipype.interface INFO:
	 stderr 2019-08-01T00:34:20.594259:++ Max displacement in automask = 0.16 (mm) at sub-brick 2
190801-00:34:20,594 nipype.interface INFO:
	 stderr 2019-08-01T00:34:20.594259:++ Max delta displ  in automask = 0.16 (mm) at sub-brick 3
190801-00:34:21,593 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref".
190801-00:34:21,966 nipype.workflow INFO:
	 [Job 431] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref).
190801-00:34:21,973 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:22,160 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/calc_dummy_scans".
190801-00:34:22,184 nipype.workflow INFO:
	 [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function")
190801-00:34:22,200 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans".
190801-00:34:22,201 nipype.workflow INFO:
	 [Job 432] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans).
190801-00:34:22,362 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr".
190801-00:34:22,382 nipype.workflow INFO:
	 [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader")
190801-00:34:22,441 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr".
190801-00:34:22,441 nipype.workflow INFO:
	 [Job 437] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr).
190801-00:34:23,971 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:24,142 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
190801-00:34:24,171 nipype.workflow INFO:
	 [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_trans_masked_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz
190801-00:34:25,565 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
190801-00:34:25,969 nipype.workflow INFO:
	 [Job 438] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
190801-00:34:25,976 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:26,166 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_t1_ref" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/func_derivatives_wf/ds_bold_t1_ref".
190801-00:34:26,280 nipype.workflow INFO:
	 [Node] Running "ds_bold_t1_ref" ("fmriprep.interfaces.DerivativesDataSink")
190801-00:34:26,423 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_t1_ref".
190801-00:34:26,423 nipype.workflow INFO:
	 [Job 439] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.func_derivatives_wf.ds_bold_t1_ref).
190801-00:34:26,592 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
190801-00:34:26,626 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
190801-00:34:27,974 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
190801-00:34:28,170 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
190801-00:34:29,973 nipype.workflow INFO:
	 [Job 440] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
190801-00:34:29,980 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:30,168 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
190801-00:34:30,207 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
190801-00:34:30,588 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
190801-00:34:31,975 nipype.workflow INFO:
	 [Job 441] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate).
190801-00:34:31,981 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:32,171 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
190801-00:34:32,247 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
190801-00:34:32,451 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
190801-00:34:33,977 nipype.workflow INFO:
	 [Job 442] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask).
190801-00:34:33,983 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:34,172 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
190801-00:34:34,232 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
190801-00:34:35,981 nipype.workflow INFO:
	 [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 8.59/8.79, Free processors: 7/8.
                     Currently running:
                       * fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize
190801-00:34:47,962 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
190801-00:34:47,988 nipype.workflow INFO:
	 [Job 443] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
190801-00:34:47,995 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:48,178 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
190801-00:34:48,213 nipype.workflow INFO:
	 [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
190801-00:34:48,289 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
190801-00:34:49,990 nipype.workflow INFO:
	 [Job 444] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
190801-00:34:49,997 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:50,179 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
190801-00:34:50,198 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
190801-00:34:50,440 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
190801-00:34:51,992 nipype.workflow INFO:
	 [Job 445] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
190801-00:34:51,999 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:52,192 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
190801-00:34:52,220 nipype.workflow INFO:
	 [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
190801-00:34:52,274 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
190801-00:34:53,994 nipype.workflow INFO:
	 [Job 446] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
190801-00:34:54,1 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:54,193 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
190801-00:34:54,226 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
190801-00:34:54,408 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
190801-00:34:55,996 nipype.workflow INFO:
	 [Job 447] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
190801-00:34:56,3 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
190801-00:34:56,196 nipype.workflow INFO:
	 [Node] Setting-up "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
190801-00:34:56,237 nipype.workflow INFO:
	 [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /home/wbreilly/wbr_can_CamCan/working4/fmriprep_wf/single_subject_CC110069_wf/func_preproc_task_Movie_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
190801-00:34:56,428 nipype.workflow INFO:
	 [Node] Finished "fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
190801-00:34:57,998 nipype.workflow INFO:
	 [Job 448] Completed (fmriprep_wf.single_subject_CC110069_wf.func_preproc_task_Movie_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
190801-00:34:58,5 nipype.workflow INFO:
	 [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 8.79/8.79, Free processors: 8/8.
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
/home/wbreilly/.local/lib/python3.6/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
  betas = np.linalg.lstsq(X, data.T)[0]
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/home/wbreilly/.local/lib/python3.6/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
  betas = np.linalg.lstsq(X, data.T)[0]
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int32 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/home/wbreilly/.local/lib/python3.6/site-packages/nilearn/image/resampling.py:510: UserWarning: Casting data from int16 to float32
  warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux))
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/home/wbreilly/.local/lib/python3.6/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
  betas = np.linalg.lstsq(X, data.T)[0]
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)
/home/wbreilly/.local/lib/python3.6/site-packages/nipype/algorithms/confounds.py:1099: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
  betas = np.linalg.lstsq(X, data.T)[0]
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/share/apps/python3-3.6.1/lib/python3.6/site-packages/matplotlib/contour.py:1243: UserWarning: No contour levels were found within the data range.
  warnings.warn("No contour levels were found"
/home/wbreilly/.local/lib/python3.6/site-packages/sklearn/externals/joblib/__init__.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+.
  warnings.warn(msg, category=DeprecationWarning)