RUNNING: docker run --rm -e DOCKER_VERSION_8395080871=24.0.7 -it -v /Users/joancarrerasdz/Desktop/Flanker:/data:ro -v /Users/joancarrerasdz/Desktop/fmriprep:/out nipreps/fmriprep:23.2.0 /data /out participant bids-validator@1.14.0 (node:9) Warning: Closing directory handle on garbage collection (Use `node --trace-warnings ...` to show where the warning was created) 1: [ERR] Invalid JSON file. The file is not formatted according the schema. (code: 55 - JSON_SCHEMA_VALIDATION_ERROR) ./task-flanker_bold.json Evidence: .CogAtlasID should match format "uri" Please visit https://neurostars.org/search?q=JSON_SCHEMA_VALIDATION_ERROR for existing conversations about this issue. 2: [ERR] Files with such naming scheme are not part of BIDS specification. This error is most commonly caused by typos in file names that make them not BIDS compatible. Please consult the specification and make sure your files are named correctly. If this is not a file naming issue (for example when including files not yet covered by the BIDS specification) you should include a ".bidsignore" file in your dataset (see https://github.com/bids-standard/bids-validator#bidsignore for details). Please note that derived (processed) data should be placed in /derivatives folder and source data (such as DICOMS or behavioural logs in proprietary formats) should be placed in the /sourcedata folder. (code: 1 - NOT_INCLUDED) ./annex-uuid Evidence: annex-uuid Please visit https://neurostars.org/search?q=NOT_INCLUDED for existing conversations about this issue. 1: [WARN] You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. 'Slice Timing' is the time at which each slice was acquired within each volume (frame) of the acquisition. Slice timing is not slice order -- rather, it is a list of times containing the time (in seconds) of each slice acquisition in relation to the beginning of volume acquisition. (code: 13 - SLICE_TIMING_NOT_DEFINED) ./sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz ./sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz ./sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz ./sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz ./sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz ./sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz ./sub-04/func/sub-04_task-flanker_run-1_bold.nii.gz ./sub-04/func/sub-04_task-flanker_run-2_bold.nii.gz ./sub-05/func/sub-05_task-flanker_run-1_bold.nii.gz ./sub-05/func/sub-05_task-flanker_run-2_bold.nii.gz ... and 42 more files having this issue (Use --verbose to see them all). Please visit https://neurostars.org/search?q=SLICE_TIMING_NOT_DEFINED for existing conversations about this issue. Summary: Available Tasks: Available Modalities: 137 Files, 1.65GB Flanker MRI 26 - Subjects 1 - Session If you have any questions, please post on https://neurostars.org/tags/bids. Traceback (most recent call last): File "/opt/conda/envs/fmriprep/bin/fmriprep", line 8, in sys.exit(main()) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/cli/run.py", line 40, in main parse_args() File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/cli/parser.py", line 828, in parse_args validate_input_dir(config.environment.exec_env, opts.bids_dir, opts.participant_label) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/fmriprep/utils/bids.py", line 237, in validate_input_dir subprocess.check_call(['bids-validator', str(bids_dir), '-c', temp.name]) File "/opt/conda/envs/fmriprep/lib/python3.10/subprocess.py", line 369, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['bids-validator', '/data', '-c', '/tmp/tmpkpslh4ts.json']' returned non-zero exit status 1. fMRIPrep: Please report errors to https://github.com/nipreps/fmriprep/issues