Progress Report / Log Started at Sun Apr 3 10:25:23 CEST 2022 Feat main script /bin/cp /tmp/feat_p26cz86n.fsf design.fsf /usr/local/fsl/bin/feat_model design mkdir .files;cp /usr/local/fsl/doc/fsl.css .files;cp -r /usr/local/fsl/doc/images .files/images /usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat2_pre /usr/local/fsl/bin/feat /mnt/c/Users/rubin/output_A0123061/higher-level.gfeat/design.fsf -D /mnt/c/Users/rubin/output_A0123061/higher-level.gfeat -gfeatprep 29224 /usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 29224 /usr/local/fsl/bin/feat /mnt/c/Users/rubin/output_A0123061/higher-level.gfeat/cope1.feat/design.fsf -D /mnt/c/Users/rubin/output_A0123061/higher-level.gfeat/cope1.feat -I 1 -flame1 3541 /usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 3541 -t ./.flame 3758 /usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 3758 /usr/local/fsl/bin/feat /mnt/c/Users/rubin/output_A0123061/higher-level.gfeat/cope1.feat/design.fsf -D 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-datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope7 -out /mnt/c/Users/rubin/output_A0123061/run-2.feat/frgrot_ngct6fzb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope8 -out /mnt/c/Users/rubin/output_A0123061/run-2.feat/frgrot_ek8s56so -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in mask -out /mnt/c/Users/rubin/output_A0123061/run-2.feat/frgrot_ccoveg0f -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char /usr/local/fsl/bin/featregapply /mnt/c/Users/rubin/output_A0123061/run-3.feat /usr/local/fsl/bin/flirt -ref reg/standard -in example_func -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_7e7kjhsj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in mean_func -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_y_b_cvkm -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/cope1 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_15htmjg4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/cope2 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_6ztrrlfn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/cope3 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_r34s2aum -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/cope4 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_0ir16fu4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/cope5 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_o2btndo1 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/cope6 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_l4_mafqq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/cope7 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_d8qqc3h2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/cope8 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_h2d75zxd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope1 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_ahjcehlr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope2 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_yj5f5cge -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope3 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_h5jhwaoc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope4 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_0askujo9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope5 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_d0s1txm9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope6 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_0zy5f8tc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope7 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_68khnyhy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in stats/varcope8 -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_hm1y1nsd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float /usr/local/fsl/bin/flirt -ref reg/standard -in mask -out /mnt/c/Users/rubin/output_A0123061/run-3.feat/frgrot_mnthsj4l -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char /usr/local/fsl/bin/fslmaths /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg/standard bg_image /usr/local/fsl/bin/fslmerge -t mask /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/mask /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/mask /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/mask mkdir -p inputreg /usr/local/fsl/bin/fslmaths ../mask -mul 3 -Tmean masksum -odt short /usr/local/fsl/bin/fslmaths masksum -thr 3 -add masksum masksum /usr/local/fsl/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 6 masksum_overlay /usr/local/fsl/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png /usr/local/fsl/bin/fslmaths masksum -mul 0 maskunique /usr/local/fsl/bin/fslmaths /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique /usr/local/fsl/bin/fslmaths /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique /usr/local/fsl/bin/fslmaths /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique /usr/local/fsl/bin/fslmaths masksum -thr 2 -uthr 2 -bin -mul maskunique maskunique /usr/local/fsl/bin/overlay 0 0 ../bg_image -a maskunique 0.9 3 maskunique_overlay /usr/local/fsl/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png /bin/cp /usr/local/fsl/etc/luts/ramp.gif .ramp.gif /usr/local/fsl/bin/fslmaths mask -Tmin mask /usr/local/fsl/bin/fslmerge -t mean_func /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/mean_func /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/mean_func /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/mean_func /usr/local/fsl/bin/fslmaths mean_func -Tmean mean_func /usr/local/fsl/bin/fslmerge -t cope1 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/cope1 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/cope1 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/cope1 /usr/local/fsl/bin/fslmaths cope1 -mas mask cope1 printf '1.396631 ' >> design.lcon /usr/local/fsl/bin/fslmerge -t varcope1 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/varcope1 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/varcope1 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/varcope1 /usr/local/fsl/bin/fslmaths varcope1 -mas mask varcope1 /usr/local/fsl/bin/fslmerge -t cope2 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/cope2 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/cope2 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/cope2 /usr/local/fsl/bin/fslmaths cope2 -mas mask cope2 printf '1.396631 ' >> design.lcon /usr/local/fsl/bin/fslmerge -t varcope2 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/varcope2 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/varcope2 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/varcope2 /usr/local/fsl/bin/fslmaths varcope2 -mas mask varcope2 /usr/local/fsl/bin/fslmerge -t cope3 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/cope3 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/cope3 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/cope3 /usr/local/fsl/bin/fslmaths cope3 -mas mask cope3 printf '1.30285566667 ' >> design.lcon /usr/local/fsl/bin/fslmerge -t varcope3 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/varcope3 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/varcope3 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/varcope3 /usr/local/fsl/bin/fslmaths varcope3 -mas mask varcope3 /usr/local/fsl/bin/fslmerge -t cope4 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/cope4 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/cope4 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/cope4 /usr/local/fsl/bin/fslmaths cope4 -mas mask cope4 printf '1.423957 ' >> design.lcon /usr/local/fsl/bin/fslmerge -t varcope4 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/varcope4 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/varcope4 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/varcope4 /usr/local/fsl/bin/fslmaths varcope4 -mas mask varcope4 /usr/local/fsl/bin/fslmerge -t cope5 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/cope5 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/cope5 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/cope5 /usr/local/fsl/bin/fslmaths cope5 -mas mask cope5 printf '1.338594 ' >> design.lcon /usr/local/fsl/bin/fslmerge -t varcope5 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/varcope5 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/varcope5 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/varcope5 /usr/local/fsl/bin/fslmaths varcope5 -mas mask varcope5 /usr/local/fsl/bin/fslmerge -t cope6 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/cope6 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/cope6 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/cope6 /usr/local/fsl/bin/fslmaths cope6 -mas mask cope6 printf '1.299924 ' >> design.lcon /usr/local/fsl/bin/fslmerge -t varcope6 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/varcope6 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/varcope6 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/varcope6 /usr/local/fsl/bin/fslmaths varcope6 -mas mask varcope6 /usr/local/fsl/bin/fslmerge -t cope7 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/cope7 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/cope7 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/cope7 /usr/local/fsl/bin/fslmaths cope7 -mas mask cope7 printf '1.26301066667 ' >> design.lcon /usr/local/fsl/bin/fslmerge -t varcope7 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/varcope7 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/varcope7 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/varcope7 /usr/local/fsl/bin/fslmaths varcope7 -mas mask varcope7 /usr/local/fsl/bin/fslmerge -t cope8 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/cope8 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/cope8 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/cope8 /usr/local/fsl/bin/fslmaths cope8 -mas mask cope8 printf '1.26301066667 ' >> design.lcon /usr/local/fsl/bin/fslmerge -t varcope8 /mnt/c/Users/rubin/output_A0123061/run-1.feat/reg_standard/stats/varcope8 /mnt/c/Users/rubin/output_A0123061/run-2.feat/reg_standard/stats/varcope8 /mnt/c/Users/rubin/output_A0123061/run-3.feat/reg_standard/stats/varcope8 /usr/local/fsl/bin/fslmaths varcope8 -mas mask varcope8