Errors Node Name: fmriprep_23_2_wf.sub_ADNI002S0413_wf.anat_fit_wf.anat_template_wf.anat_merge File: /data/derivatives/fmriprep/sub-ADNI002S0413/log/20240117-185138_35bcf3be-da65-485c-a6b4-fb456cf9e865/crash-20240117-201746-root-anat_merge-b67922a0-fe47-4606-bd80-2ff14f427aa1.txt Working Directory: /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge Inputs: args: auto_detect_sensitivity: True average_metric: environ: {'SUBJECTS_DIR': '/opt/freesurfer/subjects', 'OMP_NUM_THREADS': '1'} fixed_timepoint: True in_files: in_intensity_scales: initial_timepoint: 1 initial_transforms: intensity_scaling: True no_iteration: True num_threads: 1 out_file: mri_robust_template_out.mgz outlier_sensitivity: scaled_intensity_outputs: subjects_dir: /opt/freesurfer/subjects subsample_threshold: 200 transform_outputs: True Traceback (most recent call last): File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node result["result"] = node.run(updatehash=updatehash) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run result = self._run_interface(execute=True) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface return self._run_command(execute) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command raise NodeExecutionError(msg) nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node anat_merge. Cmdline: mri_robust_template --satit --fixtp --mov /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1/sub-ADNI002S0413_ses-M006_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2/sub-ADNI002S0413_ses-M012_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct3/sub-ADNI002S0413_ses-M024_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct4/sub-ADNI002S0413_ses-M036_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct5/sub-ADNI002S0413_ses-M048_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct6/sub-ADNI002S0413_ses-M060_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct7/sub-ADNI002S0413_ses-M072_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct8/sub-ADNI002S0413_ses-M084_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct9/sub-ADNI002S0413_ses-M096_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct10/sub-ADNI002S0413_ses-M108_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct11/sub-ADNI002S0413_ses-M132_T1w_noise_corrected_ras_corrected.nii.gz /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct12/sub-ADNI002S0413_ses-M162_T1w_noise_corrected_ras_corrected.nii.gz --inittp 1 --iscale --noit --template sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_template.nii.gz --subsample 200 --lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp01.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp02.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp03.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp04.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp05.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp06.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp07.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp08.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp09.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp10.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp11.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp12.lta /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/tp13.lta Stdout: 7.3.2 --satit: Will estimate SAT iteratively! --fixtp: Will map everything to init TP! --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1/sub-ADNI002S0413_ses-M006_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2/sub-ADNI002S0413_ses-M012_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct3/sub-ADNI002S0413_ses-M024_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct4/sub-ADNI002S0413_ses-M036_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct5/sub-ADNI002S0413_ses-M048_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct6/sub-ADNI002S0413_ses-M060_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct7/sub-ADNI002S0413_ses-M072_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct8/sub-ADNI002S0413_ses-M084_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct9/sub-ADNI002S0413_ses-M096_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct10/sub-ADNI002S0413_ses-M108_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct11/sub-ADNI002S0413_ses-M132_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. --mov: Using /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct12/sub-ADNI002S0413_ses-M162_T1w_noise_corrected_ras_corrected.nii.gz as movable/source volume. Total: 13 input volumes --inittp: Using TP 1 as target for initialization --iscale: Enabling intensity scaling! --noit: Will output only first template (no iterations)! --template: Using sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_template.nii.gz as template output volume. --subsample: Will subsample if size is larger than 200 on all axes! --lta: Will output LTA transforms Setting iscale ... reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1/sub-ADNI002S0413_ses-M006_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1/sub-ADNI002S0413_ses-M006_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2/sub-ADNI002S0413_ses-M012_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2/sub-ADNI002S0413_ses-M012_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct3/sub-ADNI002S0413_ses-M024_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct3/sub-ADNI002S0413_ses-M024_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct4/sub-ADNI002S0413_ses-M036_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct4/sub-ADNI002S0413_ses-M036_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct5/sub-ADNI002S0413_ses-M048_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct5/sub-ADNI002S0413_ses-M048_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct6/sub-ADNI002S0413_ses-M060_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct6/sub-ADNI002S0413_ses-M060_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct7/sub-ADNI002S0413_ses-M072_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct7/sub-ADNI002S0413_ses-M072_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct8/sub-ADNI002S0413_ses-M084_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct8/sub-ADNI002S0413_ses-M084_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct9/sub-ADNI002S0413_ses-M096_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct9/sub-ADNI002S0413_ses-M096_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct10/sub-ADNI002S0413_ses-M108_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct10/sub-ADNI002S0413_ses-M108_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct11/sub-ADNI002S0413_ses-M132_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct11/sub-ADNI002S0413_ses-M132_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 reading source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct12/sub-ADNI002S0413_ses-M162_T1w_noise_corrected_ras_corrected.nii.gz'... converting source '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct12/sub-ADNI002S0413_ses-M162_T1w_noise_corrected_ras_corrected.nii.gz' to bspline ... MRItoBSpline degree 3 MultiRegistration::initializing Xforms (init 1 , maxres 0 , iterate 5 , epsit 0.01 ) : [init] ========================= TP 5 to TP 1 ============================== Register TP 5 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct4/sub-ADNI002S0413_ses-M036_T1w_noise_corrected_ras_corrected.nii.gz ) to TP 1 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz ) [init] ========================= TP 2 to TP 1 ============================== Register TP 2 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1/sub-ADNI002S0413_ses-M006_T1w_noise_corrected_ras_corrected.nii.gz ) to TP 1 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz ) [init] ========================= TP 4 to TP 1 ============================== Register TP 4 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct3/sub-ADNI002S0413_ses-M024_T1w_noise_corrected_ras_corrected.nii.gz ) to TP 1 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz ) [init] ========================= TP 3 to TP 1 ============================== Register TP 3 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2/sub-ADNI002S0413_ses-M012_T1w_noise_corrected_ras_corrected.nii.gz ) to TP 1 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz ) [init] ========================= TP 9 to TP 1 ============================== Register TP 9 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct8/sub-ADNI002S0413_ses-M084_T1w_noise_corrected_ras_corrected.nii.gz ) to TP 1 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz ) [init] ========================= TP 6 to TP 1 ============================== Register TP 6 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct5/sub-ADNI002S0413_ses-M048_T1w_noise_corrected_ras_corrected.nii.gz ) to TP 1 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz ) [init] ========================= TP 8 to TP 1 ============================== Register TP 8 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct7/sub-ADNI002S0413_ses-M072_T1w_noise_corrected_ras_corrected.nii.gz ) to TP 1 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz ) [init] ========================= TP 7 to TP 1 ============================== Register TP 7 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct6/sub-ADNI002S0413_ses-M060_T1w_noise_corrected_ras_corrected.nii.gz ) to TP 1 ( /work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_corrected.nii.gz ) -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline -- Original : (1, 0.9375, 0.9375)mm and (208, 256, 256) voxels. -- Resampled: (0.9375, 0.9375, 0.9375)mm and (222, 256, 256) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 MRItoBSpline degree 3 - WARNING: trg mri outside_val = 0 but suspected background: -94.4415 If background is black or darkgray, ignore this. If white, pass --whitebgdst - WARNING: src mri outside_val = 0 but suspected background: -88.5927 If background is black or darkgray, ignore this. If white, pass --whitebgmov - WARNING: trg mri outside_val = 0 but suspected background: -94.4415 If background is black or darkgray, ignore this. If white, pass --whitebgdst - WARNING: src mri outside_val = 0 but suspected background: 2308.49 If background is black or darkgray, ignore this. If white, pass --whitebgmov - WARNING: trg mri outside_val = 0 but suspected background: -94.4415 If background is black or darkgray, ignore this. If white, pass --whitebgdst - WARNING: src mri outside_val = 0 but suspected background: -85.1662 If background is black or darkgray, ignore this. If white, pass --whitebgmov - WARNING: trg mri outside_val = 0 but suspected background: -94.4415 If background is black or darkgray, ignore this. If white, pass --whitebgdst - WARNING: trg mri outside_val = 0 but suspected background: -94.4415 If background is black or darkgray, ignore this. If white, pass --whitebgdst - WARNING: trg mri outside_val = 0 but suspected background: -94.4415 If background is black or darkgray, ignore this. If white, pass --whitebgdst - WARNING: trg mri outside_val = 0 but suspected background: -94.4415 If background is black or darkgray, ignore this. If white, pass --whitebgdst - WARNING: src mri outside_val = 0 but suspected background: -90.2766 If background is black or darkgray, ignore this. If white, pass --whitebgmov - WARNING: trg mri outside_val = 0 but suspected background: -94.4415 If background is black or darkgray, ignore this. If white, pass --whitebgdst - Max Resolution used: 2 -- gpS ( 55 , 64 , 64 ) -- gpT ( 55 , 64 , 64 ) - running loop to estimate saturation parameter: - Max Resolution used: 2 -- gpS ( 55 , 64 , 64 ) -- gpT ( 55 , 64 , 64 ) - running loop to estimate saturation parameter: - Max Resolution used: 2 -- gpS ( 55 , 64 , 64 ) -- gpT ( 55 , 64 , 64 ) - running loop to estimate saturation parameter: - Max Resolution used: 2 -- gpS ( 55 , 64 , 64 ) -- gpT ( 55 , 64 , 64 ) - running loop to estimate saturation parameter: - Max Resolution used: 2 -- gpS ( 55 , 64 , 64 ) -- gpT ( 55 , 64 , 64 ) - running loop to estimate saturation parameter: - Max Resolution used: 2 -- gpS ( 55 , 64 , 64 ) -- gpT ( 55 , 64 , 64 ) - running loop to estimate saturation parameter: - Max Resolution used: 2 -- gpS ( 55 , 64 , 64 ) -- gpT ( 55 , 64 , 64 ) - running loop to estimate saturation parameter: - Max Resolution used: 2 -- gpS ( 55 , 64 , 64 ) -- gpT ( 55 , 64 , 64 ) Stderr: Killed Traceback: Traceback (most recent call last): File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 453, in aggregate_outputs setattr(outputs, key, val) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate value = super(File, self).validate(objekt, name, value, return_pathlike=True) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate self.error(objekt, name, str(value)) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/traits/base_trait_handler.py", line 74, in error raise TraitError( traits.trait_errors.TraitError: The 'out_file' trait of a RobustTemplateOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_template.nii.gz' was specified. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 400, in run outputs = self.aggregate_outputs(runtime) File "/opt/conda/envs/fmriprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 460, in aggregate_outputs raise FileNotFoundError(msg) FileNotFoundError: No such file or directory '/work/fmriprep_23_2_wf/sub_ADNI002S0413_wf/anat_fit_wf/anat_template_wf/anat_merge/sub-ADNI002S0413_ses-M000_T1w_noise_corrected_ras_template.nii.gz' for output 'out_file' of a StructuralReference interface