Node: qsiprep_wf.single_subject_100206_wf.dwi_preproc_wf.hmc_sdc_wf.eddy
Working directory: /tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/hmc_sdc_wf/eddy

Node inputs:

args = 
cnr_maps = True
dont_peas = False
dont_sep_offs_move = False
environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ', 'OMP_NUM_THREADS': '8'}
estimate_move_by_susceptibility = <undefined>
fep = False
field = <undefined>
field_mat = <undefined>
flm = linear
fudge_factor = 10.0
fwhm = <undefined>
in_acqp = <undefined>
in_bval = <undefined>
in_bvec = <undefined>
in_file = <undefined>
in_index = <undefined>
in_mask = <undefined>
in_topup_fieldcoef = <undefined>
in_topup_movpar = <undefined>
initrand = <undefined>
interp = spline
is_shelled = True
json = <undefined>
mbs_ksp = <undefined>
mbs_lambda = <undefined>
mbs_niter = <undefined>
method = jac
mporder = <undefined>
multiband_factor = <undefined>
multiband_offset = <undefined>
niter = 5
num_threads = 8
nvoxhp = 1000
out_base = eddy_corrected
outlier_nstd = <undefined>
outlier_nvox = <undefined>
outlier_pos = <undefined>
outlier_sqr = <undefined>
outlier_type = <undefined>
output_type = NIFTI_GZ
repol = True
residuals = False
session = <undefined>
slice2vol_interp = <undefined>
slice2vol_lambda = <undefined>
slice2vol_niter = <undefined>
slice_order = <undefined>
slm = linear
use_cuda = False

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
    result["result"] = node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 434, in run
    runtime = self._run_interface(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/fsl/epi.py", line 996, in _run_interface
    runtime = super(Eddy, self)._run_interface(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 829, in _run_interface
    self.raise_exception(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 760, in raise_exception
    ).format(**runtime.dictcopy())
RuntimeError: Command:
eddy_openmp  --cnr_maps --field=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/hmc_sdc_wf/topup/fieldmap_HZ --field_mat=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/hmc_sdc_wf/topup_to_eddy_reg/topup_reg_image_flirt.mat --flm=linear --ff=10.0 --acqp=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/hmc_sdc_wf/gather_inputs/eddy_acqp.txt --bvals=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/pre_hmc_wf/rpe_concat/merge__merged.bval --bvecs=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/pre_hmc_wf/rpe_concat/merge__merged.bvec --imain=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/pre_hmc_wf/rpe_concat/merge__merged.nii.gz --index=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/hmc_sdc_wf/gather_inputs/eddy_index.txt --mask=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0/topup_imain_corrected_avg_mask.nii.gz --interp=spline --data_is_shelled --resamp=jac --niter=5 --nvoxhp=1000 --out=/tmp/work/qsiprep_wf/single_subject_100206_wf/dwi_preproc_wf/hmc_sdc_wf/eddy/eddy_corrected --repol --slm=linear
Standard output:
p6�     AcqPara::AcqPara: Unrealistic read-out time
EDDY:::  EddyHelperClasses.cpp:::  EDDY::AcqPara::AcqPara(const ColumnVector&, double):  Exception throw�
EDDY::: Eddy failed with message EDDY:::  ECScanClasses.cpp:::  EDDY::ECScanManager::ECScanManager(const string&, const string&, const string&, const string&, const string&, const string&, const string&, const string&, EDDY::ECModel, EDDY::ECModel, const std::vector<unsigned int>&, const EDDY::PolationPara&, EDDY::MultiBandGroups, bool):  Exception thrown
Standard error:

Return code: 1