220516-03:51:02,703 nipype.utils WARNING: A newer version (1.7.1) of nipy/nipype is available. You are using 1.7.0 220516-03:51:02,919 nipype.workflow IMPORTANT: Running qsirecon version 0.15.3: * BIDS dataset path: /data. * Participant list: ['02']. * Run identifier: 20220516-035102_e3a6a662-f160-4e36-9929-58de60304641. 220516-03:51:02,984 nipype.workflow INFO: found ['/qsiprep-output/sub-02/dwi/sub-02_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output 220516-03:51:02,985 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 220516-03:51:02,986 nipype.workflow INFO: Missing T1w QSIPrep outputs found: /qsiprep-output/sub-02/anat/sub-02_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5 /qsiprep-output/sub-02/anat/sub-02_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5 220516-03:51:02,987 nipype.workflow INFO: No FreeSurfer inputs available for 02 220516-03:51:02,987 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_fast': False, 'has_qsiprep_5tt_hsvs': False, 'has_freesurfer_5tt_hsvs': False, 'has_freesurfer': False, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': False} 220516-03:51:02,991 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. 220516-03:51:05,346 nipype.workflow IMPORTANT: Works derived from this qsiprep execution should include the following boilerplate: Reconstruction was performed using *QSIprep* 0.15.3, which is based on *Nipype* 1.7.0 (@nipype1; @nipype2; RRID:SCR_002502). QSIPrep-preprocessed T1w images and brain masks were used. DSI Studio Reconstruction : Diffusion orientation distribution functions (ODFs) were reconstructed using generalized q-sampling imaging (GQI, @yeh2010gqi) with a ratio of mean diffusion distance of 1.250000. Many internal operations of *qsiprep* use *Nilearn* 0.9.0 [@nilearn, RRID:SCR_001362] and *Dipy* 1.4.1[@dipy]. For more details of the pipeline, see [the section corresponding to workflows in *qsiprep*'s documentation](https://qsiprep.readthedocs.io/en/latest/workflows.html "qsiprep's documentation"). ### References [WARNING] This document format requires a nonempty element. Please specify either 'title' or 'pagetitle' in the metadata. Falling back to 'CITATION' 220516-03:51:11,576 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 220516-03:51:11,578 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 220516-03:51:11,587 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.anat_ingress_wf.anat_ingress" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/anat_ingress_wf/anat_ingress". 220516-03:51:11,589 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 220516-03:51:11,601 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.004561s. 220516-03:51:11,613 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.0057s. 220516-03:51:13,224 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 220516-03:51:13,225 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 220516-03:51:13,234 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 220516-03:51:13,234 nipype.workflow WARNING: [Node] Error on "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" (/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois) 220516-03:51:13,237 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> exception calling callback for <Future at 0x7f95f95d93d0 state=finished raised FileNotFoundError> concurrent.futures.process._RemoteTraceback: """ Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node result["result"] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 715, in _run_command result = self._interface.run(cwd=outdir, ignore_exception=True) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 388, in run self._check_mandatory_inputs() File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 275, in _check_mandatory_inputs raise ValueError(msg) ValueError: ApplyTransforms requires a value for input 'transforms'. For a list of required inputs, see ApplyTransforms.help() During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/concurrent/futures/process.py", line 239, in _process_worker r = call_item.fn(*call_item.args, **call_item.kwargs) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 70, in run_node result["result"] = node.result File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 220, in result return _load_resultfile( File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/utils.py", line 291, in load_resultfile raise FileNotFoundError(results_file) FileNotFoundError: /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois/result_odf_rois.pklz """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/concurrent/futures/_base.py", line 328, in _invoke_callbacks callback(self) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 159, in _async_callback result = args.result() File "/usr/local/miniconda/lib/python3.8/concurrent/futures/_base.py", line 437, in result return self.__get_result() File "/usr/local/miniconda/lib/python3.8/concurrent/futures/_base.py", line 389, in __get_result raise self._exception FileNotFoundError: /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois/result_odf_rois.pklz 220516-03:51:13,437 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.19852s. 220516-03:51:16,217 nipype.utils WARNING: A newer version (1.7.1) of nipy/nipype is available. 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uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/power264MNI_lps_mni_to_dwi.nii.gz"...[?7h[?7l labelconvert: [100%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/power264MNI_lps_mni_to_dwi.nii.gz"...[?7h labelconvert: [100%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/power264MNI_lps_mni_to_dwi.nii.gz" labelconvert: Image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer100x17MNI_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values [?7l labelconvert: [ 9%] uncompressing image 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"/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer100x17MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [100%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer100x17MNI_lps_to_dwi.nii.gz"...[?7h labelconvert: [100%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer100x17MNI_lps_to_dwi.nii.gz" labelconvert: Image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/gordon333MNI_lps_mni_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values [?7l labelconvert: [ 9%] uncompressing image 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or negative values [?7l labelconvert: [ 9%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer200x17MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 18%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer200x17MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 27%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer200x17MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 36%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer200x17MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 45%] uncompressing image 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labelconvert: [ 92%] Verifying parcellation image...[?7h[?7l labelconvert: [ 93%] Verifying parcellation image...[?7h[?7l labelconvert: [ 94%] Verifying parcellation image...[?7h[?7l labelconvert: [ 95%] Verifying parcellation image...[?7h[?7l labelconvert: [ 96%] Verifying parcellation image...[?7h[?7l labelconvert: [ 97%] Verifying parcellation image...[?7h[?7l labelconvert: [ 98%] Verifying parcellation image...[?7h[?7l labelconvert: [ 99%] Verifying parcellation image...[?7h[?7l labelconvert: [100%] Verifying parcellation image...[?7h labelconvert: [100%] Verifying parcellation image [?7l labelconvert: [ 9%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 18%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 27%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 36%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 45%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 55%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 64%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 73%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 82%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [ 91%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h[?7l labelconvert: [100%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz"...[?7h labelconvert: [100%] uncompressing image "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz" 220516-03:51:26,392 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.dsistudio_gqi.create_src" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/dsistudio_gqi/create_src". 220516-03:51:26,396 nipype.workflow INFO: [Node] Executing "create_src" <qsiprep.interfaces.dsi_studio.DSIStudioCreateSrc> 220516-03:51:42,259 nipype.workflow INFO: [Node] Finished "create_src", elapsed time 15.861998s. 220516-03:51:46,262 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.dsistudio_gqi.gqi_recon" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/dsistudio_gqi/gqi_recon". 220516-03:51:46,269 nipype.workflow INFO: [Node] Executing "gqi_recon" <qsiprep.interfaces.dsi_studio.DSIStudioGQIReconstruction> current dir /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/dsistudio_gqi/gqi_recon input src /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/dsistudio_gqi/gqi_recon/sub-02_space-T1w_desc-preproc_dwi.src.gz split src name sub-02_space-T1w_desc-preproc_dwi.src.gz search target /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/dsistudio_gqi/gqi_recon/sub-02_space-T1w_desc-preproc_dwi.src.gz*gqi*.fib.gz 220516-03:52:24,585 nipype.workflow INFO: [Node] Finished "gqi_recon", elapsed time 38.315507s. 220516-03:52:27,966 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.export" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/export". 220516-03:52:27,975 nipype.workflow INFO: [Node] Executing "export" <qsiprep.interfaces.dsi_studio.DSIStudioExport> 220516-03:52:29,847 nipype.workflow INFO: [Node] Finished "export", elapsed time 1.870292s. 220516-03:52:30,392 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.tractography.tracking" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking". 220516-03:52:30,401 nipype.workflow INFO: [Node] Executing "tracking" <qsiprep.interfaces.dsi_studio.DSIStudioTracking> 220516-03:58:17,131 nipype.workflow INFO: [Node] Finished "tracking", elapsed time 346.728655s. 220516-03:58:18,767 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_gfa" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_gfa". 220516-03:58:18,778 nipype.workflow INFO: [Node] Executing "fix_gfa" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:18,868 nipype.workflow INFO: [Node] Finished "fix_gfa", elapsed time 0.088322s. 220516-03:58:20,770 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_fa0" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_fa0". 220516-03:58:20,778 nipype.workflow INFO: [Node] Executing "fix_fa0" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:20,873 nipype.workflow INFO: [Node] Finished "fix_fa0", elapsed time 0.093854s. 220516-03:58:22,775 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_fa1" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_fa1". 220516-03:58:22,783 nipype.workflow INFO: [Node] Executing "fix_fa1" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:22,854 nipype.workflow INFO: [Node] Finished "fix_fa1", elapsed time 0.069312s. 220516-03:58:24,782 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_fa2" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_fa2". 220516-03:58:24,790 nipype.workflow INFO: [Node] Executing "fix_fa2" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:24,853 nipype.workflow INFO: [Node] Finished "fix_fa2", elapsed time 0.061389s. 220516-03:58:26,778 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_iso" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_iso". 220516-03:58:26,786 nipype.workflow INFO: [Node] Executing "fix_iso" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:26,872 nipype.workflow INFO: [Node] Finished "fix_iso", elapsed time 0.08434s. 220516-03:58:28,775 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_dti_fa" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_dti_fa". 220516-03:58:28,782 nipype.workflow INFO: [Node] Executing "fix_dti_fa" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:28,894 nipype.workflow INFO: [Node] Finished "fix_dti_fa", elapsed time 0.110209s. 220516-03:58:30,779 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_md" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_md". 220516-03:58:30,787 nipype.workflow INFO: [Node] Executing "fix_md" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:30,865 nipype.workflow INFO: [Node] Finished "fix_md", elapsed time 0.07602s. 220516-03:58:32,785 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_rd" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_rd". 220516-03:58:32,794 nipype.workflow INFO: [Node] Executing "fix_rd" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:32,875 nipype.workflow INFO: [Node] Finished "fix_rd", elapsed time 0.07953s. 220516-03:58:34,785 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.fix_ad" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/fix_ad". 220516-03:58:34,794 nipype.workflow INFO: [Node] Executing "fix_ad" <qsiprep.interfaces.dsi_studio.FixDSIStudioExportHeader> 220516-03:58:34,881 nipype.workflow INFO: [Node] Finished "fix_ad", elapsed time 0.085213s. 220516-03:58:36,791 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.streamline_connectivity.calc_connectivity" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity". 220516-03:58:36,892 nipype.workflow INFO: [Node] Executing "calc_connectivity" <qsiprep.interfaces.dsi_studio.DSIStudioAtlasGraph> 220516-03:58:36,911 nipype.workflow INFO: Workflow dsistudio_atlasgraph settings: ['check', 'execution', 'logging', 'monitoring'] 220516-03:58:36,917 nipype.workflow INFO: Running serially. 220516-03:58:36,917 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.power264" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264". 220516-03:58:36,925 nipype.workflow INFO: [Node] Executing "power264" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-03:58:37,10 nipype.interface INFO: stdout 2022-05-16T03:58:37.010491:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-03:58:37,12 nipype.interface INFO: stdout 2022-05-16T03:58:37.012142:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-03:58:37,12 nipype.interface INFO: stdout 2022-05-16T03:58:37.012142:action=ana 220516-03:58:37,12 nipype.interface INFO: stdout 2022-05-16T03:58:37.012142:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-03:58:38,366 nipype.interface INFO: stdout 2022-05-16T03:58:38.366092:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-03:58:38,366 nipype.interface INFO: stdout 2022-05-16T03:58:38.366092:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-03:58:38,366 nipype.interface INFO: stdout 2022-05-16T03:58:38.366092:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-03:58:56,609 nipype.interface INFO: stdout 2022-05-16T03:58:56.609635:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-03:58:56,775 nipype.interface INFO: stdout 2022-05-16T03:58:56.775628:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/power264MNI_lps_mni_to_dwi.nii.gz 220516-03:58:56,775 nipype.interface INFO: stdout 2022-05-16T03:58:56.775628:connectivity_type=pass,end 220516-03:58:56,776 nipype.interface INFO: stdout 2022-05-16T03:58:56.775628:connectivity_value=count,ncount,mean_length,gfa 220516-03:58:56,776 nipype.interface INFO: stdout 2022-05-16T03:58:56.775628:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/power264MNI_lps_mni_to_dwi.nii.gz 220516-03:58:56,793 nipype.interface INFO: stdout 2022-05-16T03:58:56.793775:DWI dimension=(104,104,72) 220516-03:58:56,794 nipype.interface INFO: stdout 2022-05-16T03:58:56.793775:NIFTI dimension=(104,104,72) 220516-03:58:56,795 nipype.interface INFO: stdout 2022-05-16T03:58:56.795393:nifti loaded as multiple ROI file 220516-03:58:56,795 nipype.interface INFO: stdout 2022-05-16T03:58:56.795393:looking for region label file 220516-03:58:56,795 nipype.interface INFO: stdout 2022-05-16T03:58:56.795661:no label file found. Use default ROI numbering. 220516-03:58:56,796 nipype.interface INFO: stdout 2022-05-16T03:58:56.796624:a total of 6 regions are loaded. 220516-03:58:56,821 nipype.interface INFO: stdout 2022-05-16T03:58:56.821210:connectivity_threshold=0.001 220516-03:58:56,821 nipype.interface INFO: stdout 2022-05-16T03:58:56.821210:count tracks by passing 220516-03:58:56,821 nipype.interface INFO: stdout 2022-05-16T03:58:56.821210:calculate matrix using count 220516-03:59:00,598 nipype.interface INFO: stdout 2022-05-16T03:59:00.598327:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.count.pass.connectivity.mat 220516-03:59:00,598 nipype.interface INFO: stdout 2022-05-16T03:59:00.598698:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.count.pass.connectogram.txt 220516-03:59:00,598 nipype.interface INFO: stdout 2022-05-16T03:59:00.598698:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.count.pass.network_measures.txt 220516-03:59:00,599 nipype.interface INFO: stdout 2022-05-16T03:59:00.598698:connectivity_threshold=0.001 220516-03:59:00,599 nipype.interface INFO: stdout 2022-05-16T03:59:00.598698:count tracks by passing 220516-03:59:00,599 nipype.interface INFO: stdout 2022-05-16T03:59:00.598698:calculate matrix using ncount 220516-03:59:04,376 nipype.interface INFO: stdout 2022-05-16T03:59:04.376456:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.ncount.pass.connectivity.mat 220516-03:59:04,376 nipype.interface INFO: stdout 2022-05-16T03:59:04.376810:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.ncount.pass.connectogram.txt 220516-03:59:04,377 nipype.interface INFO: stdout 2022-05-16T03:59:04.376810:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.ncount.pass.network_measures.txt 220516-03:59:04,377 nipype.interface INFO: stdout 2022-05-16T03:59:04.376810:connectivity_threshold=0.001 220516-03:59:04,377 nipype.interface INFO: stdout 2022-05-16T03:59:04.376810:count tracks by passing 220516-03:59:04,377 nipype.interface INFO: stdout 2022-05-16T03:59:04.376810:calculate matrix using mean_length 220516-03:59:08,156 nipype.interface INFO: stdout 2022-05-16T03:59:08.156085:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.mean_length.pass.connectivity.mat 220516-03:59:08,156 nipype.interface INFO: stdout 2022-05-16T03:59:08.156455:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.mean_length.pass.connectogram.txt 220516-03:59:08,156 nipype.interface INFO: stdout 2022-05-16T03:59:08.156455:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.mean_length.pass.network_measures.txt 220516-03:59:08,156 nipype.interface INFO: stdout 2022-05-16T03:59:08.156455:connectivity_threshold=0.001 220516-03:59:08,156 nipype.interface INFO: stdout 2022-05-16T03:59:08.156455:count tracks by passing 220516-03:59:08,156 nipype.interface INFO: stdout 2022-05-16T03:59:08.156455:calculate matrix using gfa 220516-03:59:19,705 nipype.interface INFO: stdout 2022-05-16T03:59:19.705846:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.gfa.pass.connectivity.mat 220516-03:59:19,707 nipype.interface INFO: stdout 2022-05-16T03:59:19.707674:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.gfa.pass.connectogram.txt 220516-03:59:19,709 nipype.interface INFO: stdout 2022-05-16T03:59:19.709548:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.gfa.pass.network_measures.txt 220516-03:59:19,715 nipype.interface INFO: stdout 2022-05-16T03:59:19.714972:connectivity_threshold=0.001 220516-03:59:19,715 nipype.interface INFO: stdout 2022-05-16T03:59:19.714972:count tracks by ending 220516-03:59:19,715 nipype.interface INFO: stdout 2022-05-16T03:59:19.714972:calculate matrix using count 220516-03:59:20,555 nipype.interface INFO: stdout 2022-05-16T03:59:20.555029:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.count.end.connectivity.mat 220516-03:59:20,556 nipype.interface INFO: stdout 2022-05-16T03:59:20.556457:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.count.end.connectogram.txt 220516-03:59:20,556 nipype.interface INFO: stdout 2022-05-16T03:59:20.556657:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.count.end.network_measures.txt 220516-03:59:20,556 nipype.interface INFO: stdout 2022-05-16T03:59:20.556657:connectivity_threshold=0.001 220516-03:59:20,556 nipype.interface INFO: stdout 2022-05-16T03:59:20.556657:count tracks by ending 220516-03:59:20,556 nipype.interface INFO: stdout 2022-05-16T03:59:20.556657:calculate matrix using ncount 220516-03:59:21,290 nipype.interface INFO: stdout 2022-05-16T03:59:21.290425:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.ncount.end.connectivity.mat 220516-03:59:21,290 nipype.interface INFO: stdout 2022-05-16T03:59:21.290425:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.ncount.end.connectogram.txt 220516-03:59:21,290 nipype.interface INFO: stdout 2022-05-16T03:59:21.290855:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.ncount.end.network_measures.txt 220516-03:59:21,291 nipype.interface INFO: stdout 2022-05-16T03:59:21.290855:connectivity_threshold=0.001 220516-03:59:21,291 nipype.interface INFO: stdout 2022-05-16T03:59:21.290855:count tracks by ending 220516-03:59:21,291 nipype.interface INFO: stdout 2022-05-16T03:59:21.290855:calculate matrix using mean_length 220516-03:59:22,18 nipype.interface INFO: stdout 2022-05-16T03:59:22.018370:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.mean_length.end.connectivity.mat 220516-03:59:22,18 nipype.interface INFO: stdout 2022-05-16T03:59:22.018708:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.mean_length.end.connectogram.txt 220516-03:59:22,18 nipype.interface INFO: stdout 2022-05-16T03:59:22.018708:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.mean_length.end.network_measures.txt 220516-03:59:22,18 nipype.interface INFO: stdout 2022-05-16T03:59:22.018708:connectivity_threshold=0.001 220516-03:59:22,19 nipype.interface INFO: stdout 2022-05-16T03:59:22.018708:count tracks by ending 220516-03:59:22,19 nipype.interface INFO: stdout 2022-05-16T03:59:22.018708:calculate matrix using gfa 220516-03:59:30,702 nipype.interface INFO: stdout 2022-05-16T03:59:30.701941:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.gfa.end.connectivity.mat 220516-03:59:30,705 nipype.interface INFO: stdout 2022-05-16T03:59:30.704948:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.gfa.end.connectogram.txt 220516-03:59:30,707 nipype.interface INFO: stdout 2022-05-16T03:59:30.707846:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/power264/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.power264MNI_lps_mni_to_dwi.gfa.end.network_measures.txt 220516-03:59:31,750 nipype.interface INFO: stdout 2022-05-16T03:59:31.750241:Warning: --method is not used. Please check command line syntax. 220516-03:59:31,750 nipype.interface INFO: stdout 2022-05-16T03:59:31.750241:Warning: --thread_count is not used. Please check command line syntax. 220516-03:59:31,750 nipype.interface INFO: stdout 2022-05-16T03:59:31.750241:Warning: --thread_count is not used. Please check command line syntax. 220516-03:59:32,206 nipype.workflow INFO: [Node] Finished "power264", elapsed time 55.280107s. 220516-03:59:32,211 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.schaefer100x17" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17". 220516-03:59:32,216 nipype.workflow INFO: [Node] Executing "schaefer100x17" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-03:59:32,299 nipype.interface INFO: stdout 2022-05-16T03:59:32.298851:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-03:59:32,300 nipype.interface INFO: stdout 2022-05-16T03:59:32.300187:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-03:59:32,300 nipype.interface INFO: stdout 2022-05-16T03:59:32.300187:action=ana 220516-03:59:32,300 nipype.interface INFO: stdout 2022-05-16T03:59:32.300187:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-03:59:33,617 nipype.interface INFO: stdout 2022-05-16T03:59:33.617226:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-03:59:33,617 nipype.interface INFO: stdout 2022-05-16T03:59:33.617226:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-03:59:33,617 nipype.interface INFO: stdout 2022-05-16T03:59:33.617226:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-03:59:52,10 nipype.interface INFO: stdout 2022-05-16T03:59:52.010372:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-03:59:52,187 nipype.interface INFO: stdout 2022-05-16T03:59:52.187273:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer100x17MNI_lps_to_dwi.nii.gz 220516-03:59:52,187 nipype.interface INFO: stdout 2022-05-16T03:59:52.187273:connectivity_type=pass,end 220516-03:59:52,187 nipype.interface INFO: stdout 2022-05-16T03:59:52.187273:connectivity_value=count,ncount,mean_length,gfa 220516-03:59:52,187 nipype.interface INFO: stdout 2022-05-16T03:59:52.187273:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer100x17MNI_lps_to_dwi.nii.gz 220516-03:59:52,205 nipype.interface INFO: stdout 2022-05-16T03:59:52.205930:DWI dimension=(104,104,72) 220516-03:59:52,206 nipype.interface INFO: stdout 2022-05-16T03:59:52.205930:NIFTI dimension=(104,104,72) 220516-03:59:52,207 nipype.interface INFO: stdout 2022-05-16T03:59:52.207630:nifti loaded as multiple ROI file 220516-03:59:52,207 nipype.interface INFO: stdout 2022-05-16T03:59:52.207630:looking for region label file 220516-03:59:52,207 nipype.interface INFO: stdout 2022-05-16T03:59:52.207630:no label file found. Use default ROI numbering. 220516-03:59:52,208 nipype.interface INFO: stdout 2022-05-16T03:59:52.208829:a total of 4 regions are loaded. 220516-03:59:52,235 nipype.interface INFO: stdout 2022-05-16T03:59:52.235244:connectivity_threshold=0.001 220516-03:59:52,235 nipype.interface INFO: stdout 2022-05-16T03:59:52.235244:count tracks by passing 220516-03:59:52,235 nipype.interface INFO: stdout 2022-05-16T03:59:52.235244:calculate matrix using count 220516-03:59:56,0 nipype.interface INFO: stdout 2022-05-16T03:59:56.000427:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.count.pass.connectivity.mat 220516-03:59:56,0 nipype.interface INFO: stdout 2022-05-16T03:59:56.000823:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.count.pass.connectogram.txt 220516-03:59:56,1 nipype.interface INFO: stdout 2022-05-16T03:59:56.000823:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.count.pass.network_measures.txt 220516-03:59:56,1 nipype.interface INFO: stdout 2022-05-16T03:59:56.000823:connectivity_threshold=0.001 220516-03:59:56,1 nipype.interface INFO: stdout 2022-05-16T03:59:56.000823:count tracks by passing 220516-03:59:56,1 nipype.interface INFO: stdout 2022-05-16T03:59:56.000823:calculate matrix using ncount 220516-03:59:59,973 nipype.interface INFO: stdout 2022-05-16T03:59:59.973369:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.ncount.pass.connectivity.mat 220516-03:59:59,973 nipype.interface INFO: stdout 2022-05-16T03:59:59.973763:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.ncount.pass.connectogram.txt 220516-03:59:59,973 nipype.interface INFO: stdout 2022-05-16T03:59:59.973763:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.ncount.pass.network_measures.txt 220516-03:59:59,974 nipype.interface INFO: stdout 2022-05-16T03:59:59.973763:connectivity_threshold=0.001 220516-03:59:59,974 nipype.interface INFO: stdout 2022-05-16T03:59:59.973763:count tracks by passing 220516-03:59:59,974 nipype.interface INFO: stdout 2022-05-16T03:59:59.973763:calculate matrix using mean_length 220516-04:00:04,279 nipype.interface INFO: stdout 2022-05-16T04:00:04.279054:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.mean_length.pass.connectivity.mat 220516-04:00:04,279 nipype.interface INFO: stdout 2022-05-16T04:00:04.279454:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.mean_length.pass.connectogram.txt 220516-04:00:04,279 nipype.interface INFO: stdout 2022-05-16T04:00:04.279454:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.mean_length.pass.network_measures.txt 220516-04:00:04,279 nipype.interface INFO: stdout 2022-05-16T04:00:04.279454:connectivity_threshold=0.001 220516-04:00:04,279 nipype.interface INFO: stdout 2022-05-16T04:00:04.279454:count tracks by passing 220516-04:00:04,279 nipype.interface INFO: stdout 2022-05-16T04:00:04.279454:calculate matrix using gfa 220516-04:00:17,459 nipype.interface INFO: stdout 2022-05-16T04:00:17.459549:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.gfa.pass.connectivity.mat 220516-04:00:17,461 nipype.interface INFO: stdout 2022-05-16T04:00:17.461652:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.gfa.pass.connectogram.txt 220516-04:00:17,464 nipype.interface INFO: stdout 2022-05-16T04:00:17.464040:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.gfa.pass.network_measures.txt 220516-04:00:17,471 nipype.interface INFO: stdout 2022-05-16T04:00:17.471044:connectivity_threshold=0.001 220516-04:00:17,471 nipype.interface INFO: stdout 2022-05-16T04:00:17.471044:count tracks by ending 220516-04:00:17,471 nipype.interface INFO: stdout 2022-05-16T04:00:17.471044:calculate matrix using count 220516-04:00:18,427 nipype.interface INFO: stdout 2022-05-16T04:00:18.427701:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.count.end.connectivity.mat 220516-04:00:18,429 nipype.interface INFO: stdout 2022-05-16T04:00:18.429775:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.count.end.connectogram.txt 220516-04:00:18,430 nipype.interface INFO: stdout 2022-05-16T04:00:18.429775:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.count.end.network_measures.txt 220516-04:00:18,430 nipype.interface INFO: stdout 2022-05-16T04:00:18.430182:connectivity_threshold=0.001 220516-04:00:18,430 nipype.interface INFO: stdout 2022-05-16T04:00:18.430182:count tracks by ending 220516-04:00:18,430 nipype.interface INFO: stdout 2022-05-16T04:00:18.430182:calculate matrix using ncount 220516-04:00:19,245 nipype.interface INFO: stdout 2022-05-16T04:00:19.245659:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.ncount.end.connectivity.mat 220516-04:00:19,246 nipype.interface INFO: stdout 2022-05-16T04:00:19.246314:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.ncount.end.connectogram.txt 220516-04:00:19,246 nipype.interface INFO: stdout 2022-05-16T04:00:19.246314:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.ncount.end.network_measures.txt 220516-04:00:19,246 nipype.interface INFO: stdout 2022-05-16T04:00:19.246314:connectivity_threshold=0.001 220516-04:00:19,246 nipype.interface INFO: stdout 2022-05-16T04:00:19.246314:count tracks by ending 220516-04:00:19,246 nipype.interface INFO: stdout 2022-05-16T04:00:19.246314:calculate matrix using mean_length 220516-04:00:19,988 nipype.interface INFO: stdout 2022-05-16T04:00:19.988835:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.mean_length.end.connectivity.mat 220516-04:00:19,989 nipype.interface INFO: stdout 2022-05-16T04:00:19.989219:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.mean_length.end.connectogram.txt 220516-04:00:19,989 nipype.interface INFO: stdout 2022-05-16T04:00:19.989219:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.mean_length.end.network_measures.txt 220516-04:00:19,989 nipype.interface INFO: stdout 2022-05-16T04:00:19.989219:connectivity_threshold=0.001 220516-04:00:19,989 nipype.interface INFO: stdout 2022-05-16T04:00:19.989219:count tracks by ending 220516-04:00:19,989 nipype.interface INFO: stdout 2022-05-16T04:00:19.989219:calculate matrix using gfa 220516-04:00:28,459 nipype.interface INFO: stdout 2022-05-16T04:00:28.458929:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.gfa.end.connectivity.mat 220516-04:00:28,461 nipype.interface INFO: stdout 2022-05-16T04:00:28.461245:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.gfa.end.connectogram.txt 220516-04:00:28,463 nipype.interface INFO: stdout 2022-05-16T04:00:28.463581:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x17MNI_lps_to_dwi.gfa.end.network_measures.txt 220516-04:00:29,74 nipype.interface INFO: stdout 2022-05-16T04:00:29.074554:Warning: --method is not used. Please check command line syntax. 220516-04:00:29,74 nipype.interface INFO: stdout 2022-05-16T04:00:29.074554:Warning: --thread_count is not used. Please check command line syntax. 220516-04:00:29,75 nipype.interface INFO: stdout 2022-05-16T04:00:29.074554:Warning: --thread_count is not used. Please check command line syntax. 220516-04:00:29,451 nipype.workflow INFO: [Node] Finished "schaefer100x17", elapsed time 57.234057s. 220516-04:00:29,454 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.gordon333" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333". 220516-04:00:29,464 nipype.workflow INFO: [Node] Executing "gordon333" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:00:29,549 nipype.interface INFO: stdout 2022-05-16T04:00:29.549240:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:00:29,550 nipype.interface INFO: stdout 2022-05-16T04:00:29.550761:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:00:29,550 nipype.interface INFO: stdout 2022-05-16T04:00:29.550761:action=ana 220516-04:00:29,551 nipype.interface INFO: stdout 2022-05-16T04:00:29.551094:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:00:30,878 nipype.interface INFO: stdout 2022-05-16T04:00:30.878582:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:00:30,878 nipype.interface INFO: stdout 2022-05-16T04:00:30.878582:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:00:30,879 nipype.interface INFO: stdout 2022-05-16T04:00:30.878582:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:00:49,86 nipype.interface INFO: stdout 2022-05-16T04:00:49.086009:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:00:49,448 nipype.interface INFO: stdout 2022-05-16T04:00:49.448669:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/gordon333MNI_lps_mni_to_dwi.nii.gz 220516-04:00:49,449 nipype.interface INFO: stdout 2022-05-16T04:00:49.448669:connectivity_type=pass,end 220516-04:00:49,449 nipype.interface INFO: stdout 2022-05-16T04:00:49.448669:connectivity_value=count,ncount,mean_length,gfa 220516-04:00:49,449 nipype.interface INFO: stdout 2022-05-16T04:00:49.448669:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/gordon333MNI_lps_mni_to_dwi.nii.gz 220516-04:00:49,467 nipype.interface INFO: stdout 2022-05-16T04:00:49.467022:DWI dimension=(104,104,72) 220516-04:00:49,467 nipype.interface INFO: stdout 2022-05-16T04:00:49.467022:NIFTI dimension=(104,104,72) 220516-04:00:49,468 nipype.interface INFO: stdout 2022-05-16T04:00:49.468758:nifti loaded as multiple ROI file 220516-04:00:49,468 nipype.interface INFO: stdout 2022-05-16T04:00:49.468758:looking for region label file 220516-04:00:49,469 nipype.interface INFO: stdout 2022-05-16T04:00:49.468758:no label file found. Use default ROI numbering. 220516-04:00:49,469 nipype.interface INFO: stdout 2022-05-16T04:00:49.469958:a total of 7 regions are loaded. 220516-04:00:49,495 nipype.interface INFO: stdout 2022-05-16T04:00:49.495892:connectivity_threshold=0.001 220516-04:00:49,496 nipype.interface INFO: stdout 2022-05-16T04:00:49.495892:count tracks by passing 220516-04:00:49,496 nipype.interface INFO: stdout 2022-05-16T04:00:49.495892:calculate matrix using count 220516-04:00:53,236 nipype.interface INFO: stdout 2022-05-16T04:00:53.236664:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.count.pass.connectivity.mat 220516-04:00:53,237 nipype.interface INFO: stdout 2022-05-16T04:00:53.237065:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.count.pass.connectogram.txt 220516-04:00:53,237 nipype.interface INFO: stdout 2022-05-16T04:00:53.237065:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.count.pass.network_measures.txt 220516-04:00:53,237 nipype.interface INFO: stdout 2022-05-16T04:00:53.237354:connectivity_threshold=0.001 220516-04:00:53,237 nipype.interface INFO: stdout 2022-05-16T04:00:53.237354:count tracks by passing 220516-04:00:53,237 nipype.interface INFO: stdout 2022-05-16T04:00:53.237354:calculate matrix using ncount 220516-04:00:57,643 nipype.interface INFO: stdout 2022-05-16T04:00:57.643678:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.ncount.pass.connectivity.mat 220516-04:00:57,644 nipype.interface INFO: stdout 2022-05-16T04:00:57.644053:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.ncount.pass.connectogram.txt 220516-04:00:57,644 nipype.interface INFO: stdout 2022-05-16T04:00:57.644053:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.ncount.pass.network_measures.txt 220516-04:00:57,644 nipype.interface INFO: stdout 2022-05-16T04:00:57.644053:connectivity_threshold=0.001 220516-04:00:57,644 nipype.interface INFO: stdout 2022-05-16T04:00:57.644053:count tracks by passing 220516-04:00:57,644 nipype.interface INFO: stdout 2022-05-16T04:00:57.644053:calculate matrix using mean_length 220516-04:01:01,810 nipype.interface INFO: stdout 2022-05-16T04:01:01.810352:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.mean_length.pass.connectivity.mat 220516-04:01:01,810 nipype.interface INFO: stdout 2022-05-16T04:01:01.810723:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.mean_length.pass.connectogram.txt 220516-04:01:01,810 nipype.interface INFO: stdout 2022-05-16T04:01:01.810723:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.mean_length.pass.network_measures.txt 220516-04:01:01,811 nipype.interface INFO: stdout 2022-05-16T04:01:01.810723:connectivity_threshold=0.001 220516-04:01:01,811 nipype.interface INFO: stdout 2022-05-16T04:01:01.810723:count tracks by passing 220516-04:01:01,811 nipype.interface INFO: stdout 2022-05-16T04:01:01.810723:calculate matrix using gfa 220516-04:01:13,989 nipype.interface INFO: stdout 2022-05-16T04:01:13.989098:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.gfa.pass.connectivity.mat 220516-04:01:13,991 nipype.interface INFO: stdout 2022-05-16T04:01:13.991593:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.gfa.pass.connectogram.txt 220516-04:01:13,994 nipype.interface INFO: stdout 2022-05-16T04:01:13.994144:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.gfa.pass.network_measures.txt 220516-04:01:14,1 nipype.interface INFO: stdout 2022-05-16T04:01:14.001029:connectivity_threshold=0.001 220516-04:01:14,1 nipype.interface INFO: stdout 2022-05-16T04:01:14.001029:count tracks by ending 220516-04:01:14,1 nipype.interface INFO: stdout 2022-05-16T04:01:14.001029:calculate matrix using count 220516-04:01:14,810 nipype.interface INFO: stdout 2022-05-16T04:01:14.810199:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.count.end.connectivity.mat 220516-04:01:14,812 nipype.interface INFO: stdout 2022-05-16T04:01:14.811959:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.count.end.connectogram.txt 220516-04:01:14,812 nipype.interface INFO: stdout 2022-05-16T04:01:14.811959:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.count.end.network_measures.txt 220516-04:01:14,812 nipype.interface INFO: stdout 2022-05-16T04:01:14.812347:connectivity_threshold=0.001 220516-04:01:14,812 nipype.interface INFO: stdout 2022-05-16T04:01:14.812347:count tracks by ending 220516-04:01:14,812 nipype.interface INFO: stdout 2022-05-16T04:01:14.812347:calculate matrix using ncount 220516-04:01:15,587 nipype.interface INFO: stdout 2022-05-16T04:01:15.587191:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.ncount.end.connectivity.mat 220516-04:01:15,587 nipype.interface INFO: stdout 2022-05-16T04:01:15.587557:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.ncount.end.connectogram.txt 220516-04:01:15,587 nipype.interface INFO: stdout 2022-05-16T04:01:15.587557:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.ncount.end.network_measures.txt 220516-04:01:15,587 nipype.interface INFO: stdout 2022-05-16T04:01:15.587557:connectivity_threshold=0.001 220516-04:01:15,587 nipype.interface INFO: stdout 2022-05-16T04:01:15.587557:count tracks by ending 220516-04:01:15,587 nipype.interface INFO: stdout 2022-05-16T04:01:15.587557:calculate matrix using mean_length 220516-04:01:16,342 nipype.interface INFO: stdout 2022-05-16T04:01:16.342014:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.mean_length.end.connectivity.mat 220516-04:01:16,343 nipype.interface INFO: stdout 2022-05-16T04:01:16.342014:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.mean_length.end.connectogram.txt 220516-04:01:16,343 nipype.interface INFO: stdout 2022-05-16T04:01:16.342014:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.mean_length.end.network_measures.txt 220516-04:01:16,343 nipype.interface INFO: stdout 2022-05-16T04:01:16.342014:connectivity_threshold=0.001 220516-04:01:16,343 nipype.interface INFO: stdout 2022-05-16T04:01:16.342014:count tracks by ending 220516-04:01:16,343 nipype.interface INFO: stdout 2022-05-16T04:01:16.342014:calculate matrix using gfa 220516-04:01:24,548 nipype.interface INFO: stdout 2022-05-16T04:01:24.548832:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.gfa.end.connectivity.mat 220516-04:01:24,551 nipype.interface INFO: stdout 2022-05-16T04:01:24.550925:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.gfa.end.connectogram.txt 220516-04:01:24,553 nipype.interface INFO: stdout 2022-05-16T04:01:24.553207:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/gordon333/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.gordon333MNI_lps_mni_to_dwi.gfa.end.network_measures.txt 220516-04:01:25,127 nipype.interface INFO: stdout 2022-05-16T04:01:25.127232:Warning: --method is not used. Please check command line syntax. 220516-04:01:25,127 nipype.interface INFO: stdout 2022-05-16T04:01:25.127232:Warning: --thread_count is not used. Please check command line syntax. 220516-04:01:25,127 nipype.interface INFO: stdout 2022-05-16T04:01:25.127232:Warning: --thread_count is not used. Please check command line syntax. 220516-04:01:25,523 nipype.workflow INFO: [Node] Finished "gordon333", elapsed time 56.05794s. 220516-04:01:25,529 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.aicha384" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384". 220516-04:01:25,541 nipype.workflow INFO: [Node] Executing "aicha384" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:01:25,623 nipype.interface INFO: stdout 2022-05-16T04:01:25.623652:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:01:25,624 nipype.interface INFO: stdout 2022-05-16T04:01:25.624822:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:01:25,625 nipype.interface INFO: stdout 2022-05-16T04:01:25.624822:action=ana 220516-04:01:25,625 nipype.interface INFO: stdout 2022-05-16T04:01:25.625158:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:01:26,971 nipype.interface INFO: stdout 2022-05-16T04:01:26.971473:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:01:26,971 nipype.interface INFO: stdout 2022-05-16T04:01:26.971473:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:01:26,971 nipype.interface INFO: stdout 2022-05-16T04:01:26.971473:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:01:45,323 nipype.interface INFO: stdout 2022-05-16T04:01:45.323634:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:01:45,490 nipype.interface INFO: stdout 2022-05-16T04:01:45.490289:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/aicha384MNI_lps_to_dwi.nii.gz 220516-04:01:45,490 nipype.interface INFO: stdout 2022-05-16T04:01:45.490289:connectivity_type=pass,end 220516-04:01:45,490 nipype.interface INFO: stdout 2022-05-16T04:01:45.490289:connectivity_value=count,ncount,mean_length,gfa 220516-04:01:45,490 nipype.interface INFO: stdout 2022-05-16T04:01:45.490289:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/aicha384MNI_lps_to_dwi.nii.gz 220516-04:01:45,509 nipype.interface INFO: stdout 2022-05-16T04:01:45.509418:DWI dimension=(104,104,72) 220516-04:01:45,509 nipype.interface INFO: stdout 2022-05-16T04:01:45.509418:NIFTI dimension=(104,104,72) 220516-04:01:45,511 nipype.interface INFO: stdout 2022-05-16T04:01:45.511124:nifti loaded as multiple ROI file 220516-04:01:45,511 nipype.interface INFO: stdout 2022-05-16T04:01:45.511124:looking for region label file 220516-04:01:45,511 nipype.interface INFO: stdout 2022-05-16T04:01:45.511124:no label file found. Use default ROI numbering. 220516-04:01:45,512 nipype.interface INFO: stdout 2022-05-16T04:01:45.512294:a total of 10 regions are loaded. 220516-04:01:45,541 nipype.interface INFO: stdout 2022-05-16T04:01:45.541269:connectivity_threshold=0.001 220516-04:01:45,541 nipype.interface INFO: stdout 2022-05-16T04:01:45.541269:count tracks by passing 220516-04:01:45,541 nipype.interface INFO: stdout 2022-05-16T04:01:45.541269:calculate matrix using count 220516-04:01:49,330 nipype.interface INFO: stdout 2022-05-16T04:01:49.330611:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.count.pass.connectivity.mat 220516-04:01:49,331 nipype.interface INFO: stdout 2022-05-16T04:01:49.330968:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.count.pass.connectogram.txt 220516-04:01:49,331 nipype.interface INFO: stdout 2022-05-16T04:01:49.330968:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.count.pass.network_measures.txt 220516-04:01:49,331 nipype.interface INFO: stdout 2022-05-16T04:01:49.330968:connectivity_threshold=0.001 220516-04:01:49,331 nipype.interface INFO: stdout 2022-05-16T04:01:49.330968:count tracks by passing 220516-04:01:49,331 nipype.interface INFO: stdout 2022-05-16T04:01:49.330968:calculate matrix using ncount 220516-04:01:53,146 nipype.interface INFO: stdout 2022-05-16T04:01:53.146398:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.ncount.pass.connectivity.mat 220516-04:01:53,146 nipype.interface INFO: stdout 2022-05-16T04:01:53.146748:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.ncount.pass.connectogram.txt 220516-04:01:53,146 nipype.interface INFO: stdout 2022-05-16T04:01:53.146748:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.ncount.pass.network_measures.txt 220516-04:01:53,147 nipype.interface INFO: stdout 2022-05-16T04:01:53.146748:connectivity_threshold=0.001 220516-04:01:53,147 nipype.interface INFO: stdout 2022-05-16T04:01:53.146748:count tracks by passing 220516-04:01:53,147 nipype.interface INFO: stdout 2022-05-16T04:01:53.146748:calculate matrix using mean_length 220516-04:01:56,931 nipype.interface INFO: stdout 2022-05-16T04:01:56.931304:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.mean_length.pass.connectivity.mat 220516-04:01:56,931 nipype.interface INFO: stdout 2022-05-16T04:01:56.931645:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.mean_length.pass.connectogram.txt 220516-04:01:56,931 nipype.interface INFO: stdout 2022-05-16T04:01:56.931645:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.mean_length.pass.network_measures.txt 220516-04:01:56,931 nipype.interface INFO: stdout 2022-05-16T04:01:56.931645:connectivity_threshold=0.001 220516-04:01:56,932 nipype.interface INFO: stdout 2022-05-16T04:01:56.931645:count tracks by passing 220516-04:01:56,932 nipype.interface INFO: stdout 2022-05-16T04:01:56.931645:calculate matrix using gfa 220516-04:02:08,395 nipype.interface INFO: stdout 2022-05-16T04:02:08.395157:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.gfa.pass.connectivity.mat 220516-04:02:08,397 nipype.interface INFO: stdout 2022-05-16T04:02:08.397163:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.gfa.pass.connectogram.txt 220516-04:02:08,401 nipype.interface INFO: stdout 2022-05-16T04:02:08.400990:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.gfa.pass.network_measures.txt 220516-04:02:08,406 nipype.interface INFO: stdout 2022-05-16T04:02:08.406321:connectivity_threshold=0.001 220516-04:02:08,406 nipype.interface INFO: stdout 2022-05-16T04:02:08.406321:count tracks by ending 220516-04:02:08,406 nipype.interface INFO: stdout 2022-05-16T04:02:08.406321:calculate matrix using count 220516-04:02:09,197 nipype.interface INFO: stdout 2022-05-16T04:02:09.197708:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.count.end.connectivity.mat 220516-04:02:09,198 nipype.interface INFO: stdout 2022-05-16T04:02:09.198051:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.count.end.connectogram.txt 220516-04:02:09,198 nipype.interface INFO: stdout 2022-05-16T04:02:09.198051:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.count.end.network_measures.txt 220516-04:02:09,198 nipype.interface INFO: stdout 2022-05-16T04:02:09.198051:connectivity_threshold=0.001 220516-04:02:09,198 nipype.interface INFO: stdout 2022-05-16T04:02:09.198051:count tracks by ending 220516-04:02:09,198 nipype.interface INFO: stdout 2022-05-16T04:02:09.198051:calculate matrix using ncount 220516-04:02:09,945 nipype.interface INFO: stdout 2022-05-16T04:02:09.945445:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.ncount.end.connectivity.mat 220516-04:02:09,945 nipype.interface INFO: stdout 2022-05-16T04:02:09.945782:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.ncount.end.connectogram.txt 220516-04:02:09,945 nipype.interface INFO: stdout 2022-05-16T04:02:09.945782:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.ncount.end.network_measures.txt 220516-04:02:09,946 nipype.interface INFO: stdout 2022-05-16T04:02:09.945782:connectivity_threshold=0.001 220516-04:02:09,946 nipype.interface INFO: stdout 2022-05-16T04:02:09.945782:count tracks by ending 220516-04:02:09,946 nipype.interface INFO: stdout 2022-05-16T04:02:09.945782:calculate matrix using mean_length 220516-04:02:10,697 nipype.interface INFO: stdout 2022-05-16T04:02:10.697693:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.mean_length.end.connectivity.mat 220516-04:02:10,698 nipype.interface INFO: stdout 2022-05-16T04:02:10.698034:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.mean_length.end.connectogram.txt 220516-04:02:10,698 nipype.interface INFO: stdout 2022-05-16T04:02:10.698034:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.mean_length.end.network_measures.txt 220516-04:02:10,698 nipype.interface INFO: stdout 2022-05-16T04:02:10.698034:connectivity_threshold=0.001 220516-04:02:10,698 nipype.interface INFO: stdout 2022-05-16T04:02:10.698034:count tracks by ending 220516-04:02:10,698 nipype.interface INFO: stdout 2022-05-16T04:02:10.698034:calculate matrix using gfa 220516-04:02:18,932 nipype.interface INFO: stdout 2022-05-16T04:02:18.932815:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.gfa.end.connectivity.mat 220516-04:02:18,934 nipype.interface INFO: stdout 2022-05-16T04:02:18.934592:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.gfa.end.connectogram.txt 220516-04:02:18,936 nipype.interface INFO: stdout 2022-05-16T04:02:18.936389:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aicha384/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aicha384MNI_lps_to_dwi.gfa.end.network_measures.txt 220516-04:02:19,387 nipype.interface INFO: stdout 2022-05-16T04:02:19.387586:Warning: --method is not used. Please check command line syntax. 220516-04:02:19,387 nipype.interface INFO: stdout 2022-05-16T04:02:19.387586:Warning: --thread_count is not used. Please check command line syntax. 220516-04:02:19,387 nipype.interface INFO: stdout 2022-05-16T04:02:19.387586:Warning: --thread_count is not used. Please check command line syntax. 220516-04:02:19,761 nipype.workflow INFO: [Node] Finished "aicha384", elapsed time 54.219883s. 220516-04:02:19,769 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.schaefer200x17" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17". 220516-04:02:19,775 nipype.workflow INFO: [Node] Executing "schaefer200x17" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:02:19,857 nipype.interface INFO: stdout 2022-05-16T04:02:19.857130:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:02:19,859 nipype.interface INFO: stdout 2022-05-16T04:02:19.859032:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:02:19,859 nipype.interface INFO: stdout 2022-05-16T04:02:19.859032:action=ana 220516-04:02:19,859 nipype.interface INFO: stdout 2022-05-16T04:02:19.859032:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:02:21,174 nipype.interface INFO: stdout 2022-05-16T04:02:21.174299:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:02:21,174 nipype.interface INFO: stdout 2022-05-16T04:02:21.174299:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:02:21,174 nipype.interface INFO: stdout 2022-05-16T04:02:21.174299:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:02:39,365 nipype.interface INFO: stdout 2022-05-16T04:02:39.365693:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:02:39,836 nipype.interface INFO: stdout 2022-05-16T04:02:39.836175:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer200x17MNI_lps_to_dwi.nii.gz 220516-04:02:39,836 nipype.interface INFO: stdout 2022-05-16T04:02:39.836175:connectivity_type=pass,end 220516-04:02:39,836 nipype.interface INFO: stdout 2022-05-16T04:02:39.836175:connectivity_value=count,ncount,mean_length,gfa 220516-04:02:39,836 nipype.interface INFO: stdout 2022-05-16T04:02:39.836175:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer200x17MNI_lps_to_dwi.nii.gz 220516-04:02:39,854 nipype.interface INFO: stdout 2022-05-16T04:02:39.854579:DWI dimension=(104,104,72) 220516-04:02:39,854 nipype.interface INFO: stdout 2022-05-16T04:02:39.854579:NIFTI dimension=(104,104,72) 220516-04:02:39,856 nipype.interface INFO: stdout 2022-05-16T04:02:39.856189:nifti loaded as multiple ROI file 220516-04:02:39,856 nipype.interface INFO: stdout 2022-05-16T04:02:39.856189:looking for region label file 220516-04:02:39,856 nipype.interface INFO: stdout 2022-05-16T04:02:39.856455:no label file found. Use default ROI numbering. 220516-04:02:39,857 nipype.interface INFO: stdout 2022-05-16T04:02:39.857469:a total of 5 regions are loaded. 220516-04:02:39,884 nipype.interface INFO: stdout 2022-05-16T04:02:39.884023:connectivity_threshold=0.001 220516-04:02:39,884 nipype.interface INFO: stdout 2022-05-16T04:02:39.884023:count tracks by passing 220516-04:02:39,884 nipype.interface INFO: stdout 2022-05-16T04:02:39.884023:calculate matrix using count 220516-04:02:43,829 nipype.interface INFO: stdout 2022-05-16T04:02:43.829799:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.count.pass.connectivity.mat 220516-04:02:43,830 nipype.interface INFO: stdout 2022-05-16T04:02:43.830184:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.count.pass.connectogram.txt 220516-04:02:43,830 nipype.interface INFO: stdout 2022-05-16T04:02:43.830184:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.count.pass.network_measures.txt 220516-04:02:43,830 nipype.interface INFO: stdout 2022-05-16T04:02:43.830184:connectivity_threshold=0.001 220516-04:02:43,830 nipype.interface INFO: stdout 2022-05-16T04:02:43.830184:count tracks by passing 220516-04:02:43,830 nipype.interface INFO: stdout 2022-05-16T04:02:43.830184:calculate matrix using ncount 220516-04:02:47,781 nipype.interface INFO: stdout 2022-05-16T04:02:47.781825:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.ncount.pass.connectivity.mat 220516-04:02:47,782 nipype.interface INFO: stdout 2022-05-16T04:02:47.782214:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.ncount.pass.connectogram.txt 220516-04:02:47,782 nipype.interface INFO: stdout 2022-05-16T04:02:47.782214:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.ncount.pass.network_measures.txt 220516-04:02:47,782 nipype.interface INFO: stdout 2022-05-16T04:02:47.782214:connectivity_threshold=0.001 220516-04:02:47,782 nipype.interface INFO: stdout 2022-05-16T04:02:47.782214:count tracks by passing 220516-04:02:47,782 nipype.interface INFO: stdout 2022-05-16T04:02:47.782214:calculate matrix using mean_length 220516-04:02:51,612 nipype.interface INFO: stdout 2022-05-16T04:02:51.612815:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.mean_length.pass.connectivity.mat 220516-04:02:51,613 nipype.interface INFO: stdout 2022-05-16T04:02:51.613205:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.mean_length.pass.connectogram.txt 220516-04:02:51,613 nipype.interface INFO: stdout 2022-05-16T04:02:51.613205:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.mean_length.pass.network_measures.txt 220516-04:02:51,613 nipype.interface INFO: stdout 2022-05-16T04:02:51.613205:connectivity_threshold=0.001 220516-04:02:51,613 nipype.interface INFO: stdout 2022-05-16T04:02:51.613205:count tracks by passing 220516-04:02:51,613 nipype.interface INFO: stdout 2022-05-16T04:02:51.613205:calculate matrix using gfa 220516-04:03:03,451 nipype.interface INFO: stdout 2022-05-16T04:03:03.451354:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.gfa.pass.connectivity.mat 220516-04:03:03,453 nipype.interface INFO: stdout 2022-05-16T04:03:03.453864:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.gfa.pass.connectogram.txt 220516-04:03:03,456 nipype.interface INFO: stdout 2022-05-16T04:03:03.456366:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.gfa.pass.network_measures.txt 220516-04:03:03,464 nipype.interface INFO: stdout 2022-05-16T04:03:03.464352:connectivity_threshold=0.001 220516-04:03:03,464 nipype.interface INFO: stdout 2022-05-16T04:03:03.464352:count tracks by ending 220516-04:03:03,464 nipype.interface INFO: stdout 2022-05-16T04:03:03.464352:calculate matrix using count 220516-04:03:04,817 nipype.interface INFO: stdout 2022-05-16T04:03:04.817313:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.count.end.connectivity.mat 220516-04:03:04,819 nipype.interface INFO: stdout 2022-05-16T04:03:04.819525:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.count.end.connectogram.txt 220516-04:03:04,819 nipype.interface INFO: stdout 2022-05-16T04:03:04.819778:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.count.end.network_measures.txt 220516-04:03:04,819 nipype.interface INFO: stdout 2022-05-16T04:03:04.819778:connectivity_threshold=0.001 220516-04:03:04,820 nipype.interface INFO: stdout 2022-05-16T04:03:04.819778:count tracks by ending 220516-04:03:04,820 nipype.interface INFO: stdout 2022-05-16T04:03:04.819778:calculate matrix using ncount 220516-04:03:05,747 nipype.interface INFO: stdout 2022-05-16T04:03:05.747104:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.ncount.end.connectivity.mat 220516-04:03:05,747 nipype.interface INFO: stdout 2022-05-16T04:03:05.747104:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.ncount.end.connectogram.txt 220516-04:03:05,747 nipype.interface INFO: stdout 2022-05-16T04:03:05.747600:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.ncount.end.network_measures.txt 220516-04:03:05,747 nipype.interface INFO: stdout 2022-05-16T04:03:05.747600:connectivity_threshold=0.001 220516-04:03:05,747 nipype.interface INFO: stdout 2022-05-16T04:03:05.747600:count tracks by ending 220516-04:03:05,747 nipype.interface INFO: stdout 2022-05-16T04:03:05.747600:calculate matrix using mean_length 220516-04:03:06,669 nipype.interface INFO: stdout 2022-05-16T04:03:06.669557:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.mean_length.end.connectivity.mat 220516-04:03:06,670 nipype.interface INFO: stdout 2022-05-16T04:03:06.669952:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.mean_length.end.connectogram.txt 220516-04:03:06,670 nipype.interface INFO: stdout 2022-05-16T04:03:06.669952:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.mean_length.end.network_measures.txt 220516-04:03:06,670 nipype.interface INFO: stdout 2022-05-16T04:03:06.669952:connectivity_threshold=0.001 220516-04:03:06,670 nipype.interface INFO: stdout 2022-05-16T04:03:06.669952:count tracks by ending 220516-04:03:06,670 nipype.interface INFO: stdout 2022-05-16T04:03:06.669952:calculate matrix using gfa 220516-04:03:15,367 nipype.interface INFO: stdout 2022-05-16T04:03:15.367628:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.gfa.end.connectivity.mat 220516-04:03:15,370 nipype.interface INFO: stdout 2022-05-16T04:03:15.370135:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.gfa.end.connectogram.txt 220516-04:03:15,372 nipype.interface INFO: stdout 2022-05-16T04:03:15.372484:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x17MNI_lps_to_dwi.gfa.end.network_measures.txt 220516-04:03:16,195 nipype.interface INFO: stdout 2022-05-16T04:03:16.195028:Warning: --method is not used. Please check command line syntax. 220516-04:03:16,195 nipype.interface INFO: stdout 2022-05-16T04:03:16.195028:Warning: --thread_count is not used. Please check command line syntax. 220516-04:03:16,195 nipype.interface INFO: stdout 2022-05-16T04:03:16.195028:Warning: --thread_count is not used. Please check command line syntax. 220516-04:03:16,566 nipype.workflow INFO: [Node] Finished "schaefer200x17", elapsed time 56.790325s. 220516-04:03:16,571 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.schaefer400x17" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17". 220516-04:03:16,582 nipype.workflow INFO: [Node] Executing "schaefer400x17" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:03:16,667 nipype.interface INFO: stdout 2022-05-16T04:03:16.667478:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:03:16,668 nipype.interface INFO: stdout 2022-05-16T04:03:16.668702:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:03:16,668 nipype.interface INFO: stdout 2022-05-16T04:03:16.668702:action=ana 220516-04:03:16,669 nipype.interface INFO: stdout 2022-05-16T04:03:16.669013:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:03:17,982 nipype.interface INFO: stdout 2022-05-16T04:03:17.982849:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:03:17,983 nipype.interface INFO: stdout 2022-05-16T04:03:17.982849:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:03:17,983 nipype.interface INFO: stdout 2022-05-16T04:03:17.982849:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:03:36,226 nipype.interface INFO: stdout 2022-05-16T04:03:36.226312:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:03:36,582 nipype.interface INFO: stdout 2022-05-16T04:03:36.582841:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer400x17MNI_lps_to_dwi.nii.gz 220516-04:03:36,583 nipype.interface INFO: stdout 2022-05-16T04:03:36.582841:connectivity_type=pass,end 220516-04:03:36,583 nipype.interface INFO: stdout 2022-05-16T04:03:36.582841:connectivity_value=count,ncount,mean_length,gfa 220516-04:03:36,583 nipype.interface INFO: stdout 2022-05-16T04:03:36.583440:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer400x17MNI_lps_to_dwi.nii.gz 220516-04:03:36,601 nipype.interface INFO: stdout 2022-05-16T04:03:36.601321:DWI dimension=(104,104,72) 220516-04:03:36,601 nipype.interface INFO: stdout 2022-05-16T04:03:36.601321:NIFTI dimension=(104,104,72) 220516-04:03:36,603 nipype.interface INFO: stdout 2022-05-16T04:03:36.603046:nifti loaded as multiple ROI file 220516-04:03:36,603 nipype.interface INFO: stdout 2022-05-16T04:03:36.603046:looking for region label file 220516-04:03:36,603 nipype.interface INFO: stdout 2022-05-16T04:03:36.603046:no label file found. Use default ROI numbering. 220516-04:03:36,604 nipype.interface INFO: stdout 2022-05-16T04:03:36.604282:a total of 10 regions are loaded. 220516-04:03:36,630 nipype.interface INFO: stdout 2022-05-16T04:03:36.630517:connectivity_threshold=0.001 220516-04:03:36,630 nipype.interface INFO: stdout 2022-05-16T04:03:36.630517:count tracks by passing 220516-04:03:36,630 nipype.interface INFO: stdout 2022-05-16T04:03:36.630517:calculate matrix using count 220516-04:03:40,264 nipype.interface INFO: stdout 2022-05-16T04:03:40.264414:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.count.pass.connectivity.mat 220516-04:03:40,264 nipype.interface INFO: stdout 2022-05-16T04:03:40.264818:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.count.pass.connectogram.txt 220516-04:03:40,265 nipype.interface INFO: stdout 2022-05-16T04:03:40.264818:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.count.pass.network_measures.txt 220516-04:03:40,265 nipype.interface INFO: stdout 2022-05-16T04:03:40.264818:connectivity_threshold=0.001 220516-04:03:40,265 nipype.interface INFO: stdout 2022-05-16T04:03:40.264818:count tracks by passing 220516-04:03:40,265 nipype.interface INFO: stdout 2022-05-16T04:03:40.264818:calculate matrix using ncount 220516-04:03:43,925 nipype.interface INFO: stdout 2022-05-16T04:03:43.925489:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.ncount.pass.connectivity.mat 220516-04:03:43,925 nipype.interface INFO: stdout 2022-05-16T04:03:43.925870:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.ncount.pass.connectogram.txt 220516-04:03:43,926 nipype.interface INFO: stdout 2022-05-16T04:03:43.925870:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.ncount.pass.network_measures.txt 220516-04:03:43,926 nipype.interface INFO: stdout 2022-05-16T04:03:43.925870:connectivity_threshold=0.001 220516-04:03:43,926 nipype.interface INFO: stdout 2022-05-16T04:03:43.925870:count tracks by passing 220516-04:03:43,926 nipype.interface INFO: stdout 2022-05-16T04:03:43.925870:calculate matrix using mean_length 220516-04:03:47,619 nipype.interface INFO: stdout 2022-05-16T04:03:47.619150:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.mean_length.pass.connectivity.mat 220516-04:03:47,619 nipype.interface INFO: stdout 2022-05-16T04:03:47.619532:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.mean_length.pass.connectogram.txt 220516-04:03:47,619 nipype.interface INFO: stdout 2022-05-16T04:03:47.619532:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.mean_length.pass.network_measures.txt 220516-04:03:47,619 nipype.interface INFO: stdout 2022-05-16T04:03:47.619532:connectivity_threshold=0.001 220516-04:03:47,619 nipype.interface INFO: stdout 2022-05-16T04:03:47.619532:count tracks by passing 220516-04:03:47,619 nipype.interface INFO: stdout 2022-05-16T04:03:47.619532:calculate matrix using gfa 220516-04:03:58,832 nipype.interface INFO: stdout 2022-05-16T04:03:58.832424:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.gfa.pass.connectivity.mat 220516-04:03:58,834 nipype.interface INFO: stdout 2022-05-16T04:03:58.834533:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.gfa.pass.connectogram.txt 220516-04:03:58,836 nipype.interface INFO: stdout 2022-05-16T04:03:58.836393:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.gfa.pass.network_measures.txt 220516-04:03:58,841 nipype.interface INFO: stdout 2022-05-16T04:03:58.841553:connectivity_threshold=0.001 220516-04:03:58,841 nipype.interface INFO: stdout 2022-05-16T04:03:58.841553:count tracks by ending 220516-04:03:58,841 nipype.interface INFO: stdout 2022-05-16T04:03:58.841553:calculate matrix using count 220516-04:03:59,649 nipype.interface INFO: stdout 2022-05-16T04:03:59.649275:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.count.end.connectivity.mat 220516-04:03:59,650 nipype.interface INFO: stdout 2022-05-16T04:03:59.650726:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.count.end.connectogram.txt 220516-04:03:59,650 nipype.interface INFO: stdout 2022-05-16T04:03:59.650919:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.count.end.network_measures.txt 220516-04:03:59,651 nipype.interface INFO: stdout 2022-05-16T04:03:59.650919:connectivity_threshold=0.001 220516-04:03:59,651 nipype.interface INFO: stdout 2022-05-16T04:03:59.650919:count tracks by ending 220516-04:03:59,651 nipype.interface INFO: stdout 2022-05-16T04:03:59.650919:calculate matrix using ncount 220516-04:04:00,414 nipype.interface INFO: stdout 2022-05-16T04:04:00.414066:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.ncount.end.connectivity.mat 220516-04:04:00,414 nipype.interface INFO: stdout 2022-05-16T04:04:00.414447:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.ncount.end.connectogram.txt 220516-04:04:00,414 nipype.interface INFO: stdout 2022-05-16T04:04:00.414447:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.ncount.end.network_measures.txt 220516-04:04:00,414 nipype.interface INFO: stdout 2022-05-16T04:04:00.414447:connectivity_threshold=0.001 220516-04:04:00,414 nipype.interface INFO: stdout 2022-05-16T04:04:00.414447:count tracks by ending 220516-04:04:00,414 nipype.interface INFO: stdout 2022-05-16T04:04:00.414447:calculate matrix using mean_length 220516-04:04:01,148 nipype.interface INFO: stdout 2022-05-16T04:04:01.148321:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.mean_length.end.connectivity.mat 220516-04:04:01,148 nipype.interface INFO: stdout 2022-05-16T04:04:01.148636:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.mean_length.end.connectogram.txt 220516-04:04:01,148 nipype.interface INFO: stdout 2022-05-16T04:04:01.148636:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.mean_length.end.network_measures.txt 220516-04:04:01,148 nipype.interface INFO: stdout 2022-05-16T04:04:01.148636:connectivity_threshold=0.001 220516-04:04:01,148 nipype.interface INFO: stdout 2022-05-16T04:04:01.148636:count tracks by ending 220516-04:04:01,149 nipype.interface INFO: stdout 2022-05-16T04:04:01.148636:calculate matrix using gfa 220516-04:04:09,316 nipype.interface INFO: stdout 2022-05-16T04:04:09.316637:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.gfa.end.connectivity.mat 220516-04:04:09,318 nipype.interface INFO: stdout 2022-05-16T04:04:09.318726:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.gfa.end.connectogram.txt 220516-04:04:09,320 nipype.interface INFO: stdout 2022-05-16T04:04:09.320570:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x17/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x17MNI_lps_to_dwi.gfa.end.network_measures.txt 220516-04:04:09,799 nipype.interface INFO: stdout 2022-05-16T04:04:09.799422:Warning: --method is not used. Please check command line syntax. 220516-04:04:09,799 nipype.interface INFO: stdout 2022-05-16T04:04:09.799422:Warning: --thread_count is not used. Please check command line syntax. 220516-04:04:09,799 nipype.interface INFO: stdout 2022-05-16T04:04:09.799422:Warning: --thread_count is not used. Please check command line syntax. 220516-04:04:10,270 nipype.workflow INFO: [Node] Finished "schaefer400x17", elapsed time 53.687177s. 220516-04:04:10,277 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.aal116" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116". 220516-04:04:10,282 nipype.workflow INFO: [Node] Executing "aal116" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:04:10,365 nipype.interface INFO: stdout 2022-05-16T04:04:10.365201:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:04:10,366 nipype.interface INFO: stdout 2022-05-16T04:04:10.366865:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:04:10,367 nipype.interface INFO: stdout 2022-05-16T04:04:10.366865:action=ana 220516-04:04:10,367 nipype.interface INFO: stdout 2022-05-16T04:04:10.367185:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:04:11,686 nipype.interface INFO: stdout 2022-05-16T04:04:11.686437:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:04:11,686 nipype.interface INFO: stdout 2022-05-16T04:04:11.686437:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:04:11,686 nipype.interface INFO: stdout 2022-05-16T04:04:11.686437:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:04:30,88 nipype.interface INFO: stdout 2022-05-16T04:04:30.088411:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:04:30,255 nipype.interface INFO: stdout 2022-05-16T04:04:30.255004:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/aal116MNI_lps_mni_to_dwi.nii.gz 220516-04:04:30,255 nipype.interface INFO: stdout 2022-05-16T04:04:30.255004:connectivity_type=pass,end 220516-04:04:30,255 nipype.interface INFO: stdout 2022-05-16T04:04:30.255004:connectivity_value=count,ncount,mean_length,gfa 220516-04:04:30,255 nipype.interface INFO: stdout 2022-05-16T04:04:30.255004:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/aal116MNI_lps_mni_to_dwi.nii.gz 220516-04:04:30,273 nipype.interface INFO: stdout 2022-05-16T04:04:30.273557:DWI dimension=(104,104,72) 220516-04:04:30,273 nipype.interface INFO: stdout 2022-05-16T04:04:30.273557:NIFTI dimension=(104,104,72) 220516-04:04:30,275 nipype.interface INFO: stdout 2022-05-16T04:04:30.275314:nifti loaded as multiple ROI file 220516-04:04:30,275 nipype.interface INFO: stdout 2022-05-16T04:04:30.275314:looking for region label file 220516-04:04:30,275 nipype.interface INFO: stdout 2022-05-16T04:04:30.275314:no label file found. Use default ROI numbering. 220516-04:04:30,276 nipype.interface INFO: stdout 2022-05-16T04:04:30.276485:a total of 11 regions are loaded. 220516-04:04:30,302 nipype.interface INFO: stdout 2022-05-16T04:04:30.302096:connectivity_threshold=0.001 220516-04:04:30,302 nipype.interface INFO: stdout 2022-05-16T04:04:30.302096:count tracks by passing 220516-04:04:30,302 nipype.interface INFO: stdout 2022-05-16T04:04:30.302096:calculate matrix using count 220516-04:04:33,979 nipype.interface INFO: stdout 2022-05-16T04:04:33.979636:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.count.pass.connectivity.mat 220516-04:04:33,980 nipype.interface INFO: stdout 2022-05-16T04:04:33.980000:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.count.pass.connectogram.txt 220516-04:04:33,980 nipype.interface INFO: stdout 2022-05-16T04:04:33.980000:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.count.pass.network_measures.txt 220516-04:04:33,980 nipype.interface INFO: stdout 2022-05-16T04:04:33.980000:connectivity_threshold=0.001 220516-04:04:33,980 nipype.interface INFO: stdout 2022-05-16T04:04:33.980000:count tracks by passing 220516-04:04:33,980 nipype.interface INFO: stdout 2022-05-16T04:04:33.980000:calculate matrix using ncount 220516-04:04:37,678 nipype.interface INFO: stdout 2022-05-16T04:04:37.678844:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.ncount.pass.connectivity.mat 220516-04:04:37,679 nipype.interface INFO: stdout 2022-05-16T04:04:37.679195:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.ncount.pass.connectogram.txt 220516-04:04:37,679 nipype.interface INFO: stdout 2022-05-16T04:04:37.679195:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.ncount.pass.network_measures.txt 220516-04:04:37,679 nipype.interface INFO: stdout 2022-05-16T04:04:37.679195:connectivity_threshold=0.001 220516-04:04:37,679 nipype.interface INFO: stdout 2022-05-16T04:04:37.679195:count tracks by passing 220516-04:04:37,679 nipype.interface INFO: stdout 2022-05-16T04:04:37.679195:calculate matrix using mean_length 220516-04:04:41,354 nipype.interface INFO: stdout 2022-05-16T04:04:41.354522:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.mean_length.pass.connectivity.mat 220516-04:04:41,354 nipype.interface INFO: stdout 2022-05-16T04:04:41.354871:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.mean_length.pass.connectogram.txt 220516-04:04:41,355 nipype.interface INFO: stdout 2022-05-16T04:04:41.354871:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.mean_length.pass.network_measures.txt 220516-04:04:41,355 nipype.interface INFO: stdout 2022-05-16T04:04:41.354871:connectivity_threshold=0.001 220516-04:04:41,355 nipype.interface INFO: stdout 2022-05-16T04:04:41.354871:count tracks by passing 220516-04:04:41,355 nipype.interface INFO: stdout 2022-05-16T04:04:41.354871:calculate matrix using gfa 220516-04:04:52,779 nipype.interface INFO: stdout 2022-05-16T04:04:52.779742:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.gfa.pass.connectivity.mat 220516-04:04:52,781 nipype.interface INFO: stdout 2022-05-16T04:04:52.781561:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.gfa.pass.connectogram.txt 220516-04:04:52,785 nipype.interface INFO: stdout 2022-05-16T04:04:52.785259:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.gfa.pass.network_measures.txt 220516-04:04:52,790 nipype.interface INFO: stdout 2022-05-16T04:04:52.790637:connectivity_threshold=0.001 220516-04:04:52,790 nipype.interface INFO: stdout 2022-05-16T04:04:52.790637:count tracks by ending 220516-04:04:52,790 nipype.interface INFO: stdout 2022-05-16T04:04:52.790637:calculate matrix using count 220516-04:04:53,545 nipype.interface INFO: stdout 2022-05-16T04:04:53.544944:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.count.end.connectivity.mat 220516-04:04:53,545 nipype.interface INFO: stdout 2022-05-16T04:04:53.545285:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.count.end.connectogram.txt 220516-04:04:53,545 nipype.interface INFO: stdout 2022-05-16T04:04:53.545285:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.count.end.network_measures.txt 220516-04:04:53,545 nipype.interface INFO: stdout 2022-05-16T04:04:53.545285:connectivity_threshold=0.001 220516-04:04:53,545 nipype.interface INFO: stdout 2022-05-16T04:04:53.545285:count tracks by ending 220516-04:04:53,545 nipype.interface INFO: stdout 2022-05-16T04:04:53.545285:calculate matrix using ncount 220516-04:04:54,285 nipype.interface INFO: stdout 2022-05-16T04:04:54.285239:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.ncount.end.connectivity.mat 220516-04:04:54,285 nipype.interface INFO: stdout 2022-05-16T04:04:54.285583:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.ncount.end.connectogram.txt 220516-04:04:54,285 nipype.interface INFO: stdout 2022-05-16T04:04:54.285583:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.ncount.end.network_measures.txt 220516-04:04:54,285 nipype.interface INFO: stdout 2022-05-16T04:04:54.285583:connectivity_threshold=0.001 220516-04:04:54,285 nipype.interface INFO: stdout 2022-05-16T04:04:54.285583:count tracks by ending 220516-04:04:54,286 nipype.interface INFO: stdout 2022-05-16T04:04:54.285583:calculate matrix using mean_length 220516-04:04:55,16 nipype.interface INFO: stdout 2022-05-16T04:04:55.016365:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.mean_length.end.connectivity.mat 220516-04:04:55,16 nipype.interface INFO: stdout 2022-05-16T04:04:55.016704:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.mean_length.end.connectogram.txt 220516-04:04:55,16 nipype.interface INFO: stdout 2022-05-16T04:04:55.016704:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.mean_length.end.network_measures.txt 220516-04:04:55,16 nipype.interface INFO: stdout 2022-05-16T04:04:55.016704:connectivity_threshold=0.001 220516-04:04:55,17 nipype.interface INFO: stdout 2022-05-16T04:04:55.016704:count tracks by ending 220516-04:04:55,17 nipype.interface INFO: stdout 2022-05-16T04:04:55.016704:calculate matrix using gfa 220516-04:05:03,206 nipype.interface INFO: stdout 2022-05-16T04:05:03.206484:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.gfa.end.connectivity.mat 220516-04:05:03,208 nipype.interface INFO: stdout 2022-05-16T04:05:03.208119:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.gfa.end.connectogram.txt 220516-04:05:03,209 nipype.interface INFO: stdout 2022-05-16T04:05:03.209782:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/aal116/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.aal116MNI_lps_mni_to_dwi.gfa.end.network_measures.txt 220516-04:05:03,670 nipype.interface INFO: stdout 2022-05-16T04:05:03.670755:Warning: --method is not used. Please check command line syntax. 220516-04:05:03,671 nipype.interface INFO: stdout 2022-05-16T04:05:03.670755:Warning: --thread_count is not used. Please check command line syntax. 220516-04:05:03,671 nipype.interface INFO: stdout 2022-05-16T04:05:03.670755:Warning: --thread_count is not used. Please check command line syntax. 220516-04:05:04,35 nipype.workflow INFO: [Node] Finished "aal116", elapsed time 53.752759s. 220516-04:05:04,39 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.schaefer200x7" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7". 220516-04:05:04,46 nipype.workflow INFO: [Node] Executing "schaefer200x7" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:05:04,128 nipype.interface INFO: stdout 2022-05-16T04:05:04.128194:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:05:04,129 nipype.interface INFO: stdout 2022-05-16T04:05:04.129821:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:05:04,130 nipype.interface INFO: stdout 2022-05-16T04:05:04.129821:action=ana 220516-04:05:04,130 nipype.interface INFO: stdout 2022-05-16T04:05:04.129821:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:05:05,493 nipype.interface INFO: stdout 2022-05-16T04:05:05.493648:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:05:05,493 nipype.interface INFO: stdout 2022-05-16T04:05:05.493648:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:05:05,494 nipype.interface INFO: stdout 2022-05-16T04:05:05.493648:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:05:23,664 nipype.interface INFO: stdout 2022-05-16T04:05:23.664521:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:05:23,833 nipype.interface INFO: stdout 2022-05-16T04:05:23.833148:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer200x7MNI_lps_to_dwi.nii.gz 220516-04:05:23,833 nipype.interface INFO: stdout 2022-05-16T04:05:23.833148:connectivity_type=pass,end 220516-04:05:23,833 nipype.interface INFO: stdout 2022-05-16T04:05:23.833148:connectivity_value=count,ncount,mean_length,gfa 220516-04:05:23,833 nipype.interface INFO: stdout 2022-05-16T04:05:23.833148:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer200x7MNI_lps_to_dwi.nii.gz 220516-04:05:23,851 nipype.interface INFO: stdout 2022-05-16T04:05:23.851317:DWI dimension=(104,104,72) 220516-04:05:23,851 nipype.interface INFO: stdout 2022-05-16T04:05:23.851317:NIFTI dimension=(104,104,72) 220516-04:05:23,853 nipype.interface INFO: stdout 2022-05-16T04:05:23.853031:nifti loaded as multiple ROI file 220516-04:05:23,853 nipype.interface INFO: stdout 2022-05-16T04:05:23.853031:looking for region label file 220516-04:05:23,853 nipype.interface INFO: stdout 2022-05-16T04:05:23.853031:no label file found. Use default ROI numbering. 220516-04:05:23,854 nipype.interface INFO: stdout 2022-05-16T04:05:23.854216:a total of 5 regions are loaded. 220516-04:05:23,880 nipype.interface INFO: stdout 2022-05-16T04:05:23.879982:connectivity_threshold=0.001 220516-04:05:23,880 nipype.interface INFO: stdout 2022-05-16T04:05:23.879982:count tracks by passing 220516-04:05:23,880 nipype.interface INFO: stdout 2022-05-16T04:05:23.879982:calculate matrix using count 220516-04:05:27,600 nipype.interface INFO: stdout 2022-05-16T04:05:27.600585:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.count.pass.connectivity.mat 220516-04:05:27,601 nipype.interface INFO: stdout 2022-05-16T04:05:27.600947:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.count.pass.connectogram.txt 220516-04:05:27,601 nipype.interface INFO: stdout 2022-05-16T04:05:27.600947:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.count.pass.network_measures.txt 220516-04:05:27,601 nipype.interface INFO: stdout 2022-05-16T04:05:27.600947:connectivity_threshold=0.001 220516-04:05:27,601 nipype.interface INFO: stdout 2022-05-16T04:05:27.600947:count tracks by passing 220516-04:05:27,601 nipype.interface INFO: stdout 2022-05-16T04:05:27.600947:calculate matrix using ncount 220516-04:05:31,318 nipype.interface INFO: stdout 2022-05-16T04:05:31.318157:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.ncount.pass.connectivity.mat 220516-04:05:31,318 nipype.interface INFO: stdout 2022-05-16T04:05:31.318524:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.ncount.pass.connectogram.txt 220516-04:05:31,318 nipype.interface INFO: stdout 2022-05-16T04:05:31.318524:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.ncount.pass.network_measures.txt 220516-04:05:31,318 nipype.interface INFO: stdout 2022-05-16T04:05:31.318524:connectivity_threshold=0.001 220516-04:05:31,318 nipype.interface INFO: stdout 2022-05-16T04:05:31.318524:count tracks by passing 220516-04:05:31,318 nipype.interface INFO: stdout 2022-05-16T04:05:31.318524:calculate matrix using mean_length 220516-04:05:35,37 nipype.interface INFO: stdout 2022-05-16T04:05:35.037283:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.mean_length.pass.connectivity.mat 220516-04:05:35,37 nipype.interface INFO: stdout 2022-05-16T04:05:35.037628:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.mean_length.pass.connectogram.txt 220516-04:05:35,37 nipype.interface INFO: stdout 2022-05-16T04:05:35.037628:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.mean_length.pass.network_measures.txt 220516-04:05:35,37 nipype.interface INFO: stdout 2022-05-16T04:05:35.037628:connectivity_threshold=0.001 220516-04:05:35,37 nipype.interface INFO: stdout 2022-05-16T04:05:35.037628:count tracks by passing 220516-04:05:35,38 nipype.interface INFO: stdout 2022-05-16T04:05:35.037628:calculate matrix using gfa 220516-04:05:46,677 nipype.interface INFO: stdout 2022-05-16T04:05:46.677236:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.gfa.pass.connectivity.mat 220516-04:05:46,679 nipype.interface INFO: stdout 2022-05-16T04:05:46.679071:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.gfa.pass.connectogram.txt 220516-04:05:46,681 nipype.interface INFO: stdout 2022-05-16T04:05:46.681001:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.gfa.pass.network_measures.txt 220516-04:05:46,686 nipype.interface INFO: stdout 2022-05-16T04:05:46.686491:connectivity_threshold=0.001 220516-04:05:46,686 nipype.interface INFO: stdout 2022-05-16T04:05:46.686491:count tracks by ending 220516-04:05:46,686 nipype.interface INFO: stdout 2022-05-16T04:05:46.686491:calculate matrix using count 220516-04:05:47,491 nipype.interface INFO: stdout 2022-05-16T04:05:47.491665:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.count.end.connectivity.mat 220516-04:05:47,493 nipype.interface INFO: stdout 2022-05-16T04:05:47.493057:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.count.end.connectogram.txt 220516-04:05:47,493 nipype.interface INFO: stdout 2022-05-16T04:05:47.493237:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.count.end.network_measures.txt 220516-04:05:47,493 nipype.interface INFO: stdout 2022-05-16T04:05:47.493237:connectivity_threshold=0.001 220516-04:05:47,493 nipype.interface INFO: stdout 2022-05-16T04:05:47.493237:count tracks by ending 220516-04:05:47,493 nipype.interface INFO: stdout 2022-05-16T04:05:47.493237:calculate matrix using ncount 220516-04:05:48,222 nipype.interface INFO: stdout 2022-05-16T04:05:48.222370:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.ncount.end.connectivity.mat 220516-04:05:48,222 nipype.interface INFO: stdout 2022-05-16T04:05:48.222710:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.ncount.end.connectogram.txt 220516-04:05:48,222 nipype.interface INFO: stdout 2022-05-16T04:05:48.222710:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.ncount.end.network_measures.txt 220516-04:05:48,222 nipype.interface INFO: stdout 2022-05-16T04:05:48.222710:connectivity_threshold=0.001 220516-04:05:48,223 nipype.interface INFO: stdout 2022-05-16T04:05:48.222710:count tracks by ending 220516-04:05:48,223 nipype.interface INFO: stdout 2022-05-16T04:05:48.222710:calculate matrix using mean_length 220516-04:05:48,968 nipype.interface INFO: stdout 2022-05-16T04:05:48.968193:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.mean_length.end.connectivity.mat 220516-04:05:48,968 nipype.interface INFO: stdout 2022-05-16T04:05:48.968537:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.mean_length.end.connectogram.txt 220516-04:05:48,968 nipype.interface INFO: stdout 2022-05-16T04:05:48.968537:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.mean_length.end.network_measures.txt 220516-04:05:48,968 nipype.interface INFO: stdout 2022-05-16T04:05:48.968537:connectivity_threshold=0.001 220516-04:05:48,968 nipype.interface INFO: stdout 2022-05-16T04:05:48.968537:count tracks by ending 220516-04:05:48,968 nipype.interface INFO: stdout 2022-05-16T04:05:48.968537:calculate matrix using gfa 220516-04:05:57,512 nipype.interface INFO: stdout 2022-05-16T04:05:57.512454:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.gfa.end.connectivity.mat 220516-04:05:57,514 nipype.interface INFO: stdout 2022-05-16T04:05:57.514296:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.gfa.end.connectogram.txt 220516-04:05:57,516 nipype.interface INFO: stdout 2022-05-16T04:05:57.516042:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer200x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer200x7MNI_lps_to_dwi.gfa.end.network_measures.txt 220516-04:05:57,986 nipype.interface INFO: stdout 2022-05-16T04:05:57.986225:Warning: --method is not used. Please check command line syntax. 220516-04:05:57,986 nipype.interface INFO: stdout 2022-05-16T04:05:57.986225:Warning: --thread_count is not used. Please check command line syntax. 220516-04:05:57,986 nipype.interface INFO: stdout 2022-05-16T04:05:57.986225:Warning: --thread_count is not used. Please check command line syntax. 220516-04:05:58,307 nipype.workflow INFO: [Node] Finished "schaefer200x7", elapsed time 54.260474s. 220516-04:05:58,312 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.schaefer100x7" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7". 220516-04:05:58,316 nipype.workflow INFO: [Node] Executing "schaefer100x7" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:05:58,395 nipype.interface INFO: stdout 2022-05-16T04:05:58.395738:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:05:58,397 nipype.interface INFO: stdout 2022-05-16T04:05:58.397020:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:05:58,397 nipype.interface INFO: stdout 2022-05-16T04:05:58.397020:action=ana 220516-04:05:58,397 nipype.interface INFO: stdout 2022-05-16T04:05:58.397020:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:05:59,716 nipype.interface INFO: stdout 2022-05-16T04:05:59.716456:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:05:59,716 nipype.interface INFO: stdout 2022-05-16T04:05:59.716456:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:05:59,716 nipype.interface INFO: stdout 2022-05-16T04:05:59.716456:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:06:17,815 nipype.interface INFO: stdout 2022-05-16T04:06:17.815266:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:06:17,982 nipype.interface INFO: stdout 2022-05-16T04:06:17.982605:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer100x7MNI_lps_to_dwi.nii.gz 220516-04:06:17,982 nipype.interface INFO: stdout 2022-05-16T04:06:17.982605:connectivity_type=pass,end 220516-04:06:17,983 nipype.interface INFO: stdout 2022-05-16T04:06:17.982605:connectivity_value=count,ncount,mean_length,gfa 220516-04:06:17,983 nipype.interface INFO: stdout 2022-05-16T04:06:17.982605:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer100x7MNI_lps_to_dwi.nii.gz 220516-04:06:18,1 nipype.interface INFO: stdout 2022-05-16T04:06:18.000945:DWI dimension=(104,104,72) 220516-04:06:18,1 nipype.interface INFO: stdout 2022-05-16T04:06:18.000945:NIFTI dimension=(104,104,72) 220516-04:06:18,2 nipype.interface INFO: stdout 2022-05-16T04:06:18.002673:nifti loaded as multiple ROI file 220516-04:06:18,2 nipype.interface INFO: stdout 2022-05-16T04:06:18.002673:looking for region label file 220516-04:06:18,2 nipype.interface INFO: stdout 2022-05-16T04:06:18.002673:no label file found. Use default ROI numbering. 220516-04:06:18,3 nipype.interface INFO: stdout 2022-05-16T04:06:18.003829:a total of 4 regions are loaded. 220516-04:06:18,29 nipype.interface INFO: stdout 2022-05-16T04:06:18.029267:connectivity_threshold=0.001 220516-04:06:18,29 nipype.interface INFO: stdout 2022-05-16T04:06:18.029267:count tracks by passing 220516-04:06:18,29 nipype.interface INFO: stdout 2022-05-16T04:06:18.029267:calculate matrix using count 220516-04:06:21,687 nipype.interface INFO: stdout 2022-05-16T04:06:21.687784:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.count.pass.connectivity.mat 220516-04:06:21,688 nipype.interface INFO: stdout 2022-05-16T04:06:21.688147:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.count.pass.connectogram.txt 220516-04:06:21,688 nipype.interface INFO: stdout 2022-05-16T04:06:21.688147:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.count.pass.network_measures.txt 220516-04:06:21,688 nipype.interface INFO: stdout 2022-05-16T04:06:21.688147:connectivity_threshold=0.001 220516-04:06:21,688 nipype.interface INFO: stdout 2022-05-16T04:06:21.688147:count tracks by passing 220516-04:06:21,688 nipype.interface INFO: stdout 2022-05-16T04:06:21.688147:calculate matrix using ncount 220516-04:06:25,386 nipype.interface INFO: stdout 2022-05-16T04:06:25.386337:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.ncount.pass.connectivity.mat 220516-04:06:25,386 nipype.interface INFO: stdout 2022-05-16T04:06:25.386677:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.ncount.pass.connectogram.txt 220516-04:06:25,386 nipype.interface INFO: stdout 2022-05-16T04:06:25.386677:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.ncount.pass.network_measures.txt 220516-04:06:25,386 nipype.interface INFO: stdout 2022-05-16T04:06:25.386677:connectivity_threshold=0.001 220516-04:06:25,387 nipype.interface INFO: stdout 2022-05-16T04:06:25.386677:count tracks by passing 220516-04:06:25,387 nipype.interface INFO: stdout 2022-05-16T04:06:25.386677:calculate matrix using mean_length 220516-04:06:29,111 nipype.interface INFO: stdout 2022-05-16T04:06:29.111484:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.mean_length.pass.connectivity.mat 220516-04:06:29,111 nipype.interface INFO: stdout 2022-05-16T04:06:29.111833:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.mean_length.pass.connectogram.txt 220516-04:06:29,112 nipype.interface INFO: stdout 2022-05-16T04:06:29.111833:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.mean_length.pass.network_measures.txt 220516-04:06:29,112 nipype.interface INFO: stdout 2022-05-16T04:06:29.111833:connectivity_threshold=0.001 220516-04:06:29,112 nipype.interface INFO: stdout 2022-05-16T04:06:29.111833:count tracks by passing 220516-04:06:29,112 nipype.interface INFO: stdout 2022-05-16T04:06:29.111833:calculate matrix using gfa 220516-04:06:40,502 nipype.interface INFO: stdout 2022-05-16T04:06:40.502084:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.gfa.pass.connectivity.mat 220516-04:06:40,503 nipype.interface INFO: stdout 2022-05-16T04:06:40.503853:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.gfa.pass.connectogram.txt 220516-04:06:40,505 nipype.interface INFO: stdout 2022-05-16T04:06:40.505602:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.gfa.pass.network_measures.txt 220516-04:06:40,510 nipype.interface INFO: stdout 2022-05-16T04:06:40.510855:connectivity_threshold=0.001 220516-04:06:40,511 nipype.interface INFO: stdout 2022-05-16T04:06:40.510855:count tracks by ending 220516-04:06:40,511 nipype.interface INFO: stdout 2022-05-16T04:06:40.510855:calculate matrix using count 220516-04:06:41,313 nipype.interface INFO: stdout 2022-05-16T04:06:41.313872:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.count.end.connectivity.mat 220516-04:06:41,315 nipype.interface INFO: stdout 2022-05-16T04:06:41.315281:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.count.end.connectogram.txt 220516-04:06:41,315 nipype.interface INFO: stdout 2022-05-16T04:06:41.315469:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.count.end.network_measures.txt 220516-04:06:41,315 nipype.interface INFO: stdout 2022-05-16T04:06:41.315469:connectivity_threshold=0.001 220516-04:06:41,315 nipype.interface INFO: stdout 2022-05-16T04:06:41.315469:count tracks by ending 220516-04:06:41,315 nipype.interface INFO: stdout 2022-05-16T04:06:41.315469:calculate matrix using ncount 220516-04:06:42,36 nipype.interface INFO: stdout 2022-05-16T04:06:42.036488:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.ncount.end.connectivity.mat 220516-04:06:42,36 nipype.interface INFO: stdout 2022-05-16T04:06:42.036835:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.ncount.end.connectogram.txt 220516-04:06:42,37 nipype.interface INFO: stdout 2022-05-16T04:06:42.036835:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.ncount.end.network_measures.txt 220516-04:06:42,37 nipype.interface INFO: stdout 2022-05-16T04:06:42.036835:connectivity_threshold=0.001 220516-04:06:42,37 nipype.interface INFO: stdout 2022-05-16T04:06:42.036835:count tracks by ending 220516-04:06:42,37 nipype.interface INFO: stdout 2022-05-16T04:06:42.036835:calculate matrix using mean_length 220516-04:06:42,765 nipype.interface INFO: stdout 2022-05-16T04:06:42.765653:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.mean_length.end.connectivity.mat 220516-04:06:42,765 nipype.interface INFO: stdout 2022-05-16T04:06:42.765653:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.mean_length.end.connectogram.txt 220516-04:06:42,766 nipype.interface INFO: stdout 2022-05-16T04:06:42.766109:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.mean_length.end.network_measures.txt 220516-04:06:42,766 nipype.interface INFO: stdout 2022-05-16T04:06:42.766109:connectivity_threshold=0.001 220516-04:06:42,766 nipype.interface INFO: stdout 2022-05-16T04:06:42.766109:count tracks by ending 220516-04:06:42,766 nipype.interface INFO: stdout 2022-05-16T04:06:42.766109:calculate matrix using gfa 220516-04:06:51,347 nipype.interface INFO: stdout 2022-05-16T04:06:51.347019:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.gfa.end.connectivity.mat 220516-04:06:51,349 nipype.interface INFO: stdout 2022-05-16T04:06:51.349458:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.gfa.end.connectogram.txt 220516-04:06:51,352 nipype.interface INFO: stdout 2022-05-16T04:06:51.352287:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer100x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer100x7MNI_lps_to_dwi.gfa.end.network_measures.txt 220516-04:06:52,333 nipype.interface INFO: stdout 2022-05-16T04:06:52.332714:Warning: --method is not used. Please check command line syntax. 220516-04:06:52,333 nipype.interface INFO: stdout 2022-05-16T04:06:52.332714:Warning: --thread_count is not used. Please check command line syntax. 220516-04:06:52,333 nipype.interface INFO: stdout 2022-05-16T04:06:52.332714:Warning: --thread_count is not used. Please check command line syntax. 220516-04:06:52,744 nipype.workflow INFO: [Node] Finished "schaefer100x7", elapsed time 54.42714s. 220516-04:06:52,747 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.schaefer400x7" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7". 220516-04:06:52,758 nipype.workflow INFO: [Node] Executing "schaefer400x7" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:06:52,844 nipype.interface INFO: stdout 2022-05-16T04:06:52.844092:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:06:52,845 nipype.interface INFO: stdout 2022-05-16T04:06:52.845330:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:06:52,845 nipype.interface INFO: stdout 2022-05-16T04:06:52.845330:action=ana 220516-04:06:52,845 nipype.interface INFO: stdout 2022-05-16T04:06:52.845641:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:06:54,157 nipype.interface INFO: stdout 2022-05-16T04:06:54.157052:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:06:54,157 nipype.interface INFO: stdout 2022-05-16T04:06:54.157052:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:06:54,157 nipype.interface INFO: stdout 2022-05-16T04:06:54.157052:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:07:12,367 nipype.interface INFO: stdout 2022-05-16T04:07:12.367464:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:07:12,535 nipype.interface INFO: stdout 2022-05-16T04:07:12.535660:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer400x7MNI_lps_to_dwi.nii.gz 220516-04:07:12,535 nipype.interface INFO: stdout 2022-05-16T04:07:12.535660:connectivity_type=pass,end 220516-04:07:12,536 nipype.interface INFO: stdout 2022-05-16T04:07:12.535660:connectivity_value=count,ncount,mean_length,gfa 220516-04:07:12,536 nipype.interface INFO: stdout 2022-05-16T04:07:12.535660:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/schaefer400x7MNI_lps_to_dwi.nii.gz 220516-04:07:12,555 nipype.interface INFO: stdout 2022-05-16T04:07:12.554984:DWI dimension=(104,104,72) 220516-04:07:12,555 nipype.interface INFO: stdout 2022-05-16T04:07:12.554984:NIFTI dimension=(104,104,72) 220516-04:07:12,556 nipype.interface INFO: stdout 2022-05-16T04:07:12.556715:nifti loaded as multiple ROI file 220516-04:07:12,556 nipype.interface INFO: stdout 2022-05-16T04:07:12.556715:looking for region label file 220516-04:07:12,557 nipype.interface INFO: stdout 2022-05-16T04:07:12.556715:no label file found. Use default ROI numbering. 220516-04:07:12,557 nipype.interface INFO: stdout 2022-05-16T04:07:12.557864:a total of 10 regions are loaded. 220516-04:07:12,585 nipype.interface INFO: stdout 2022-05-16T04:07:12.585803:connectivity_threshold=0.001 220516-04:07:12,586 nipype.interface INFO: stdout 2022-05-16T04:07:12.585803:count tracks by passing 220516-04:07:12,586 nipype.interface INFO: stdout 2022-05-16T04:07:12.585803:calculate matrix using count 220516-04:07:16,272 nipype.interface INFO: stdout 2022-05-16T04:07:16.272856:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.count.pass.connectivity.mat 220516-04:07:16,273 nipype.interface INFO: stdout 2022-05-16T04:07:16.273237:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.count.pass.connectogram.txt 220516-04:07:16,273 nipype.interface INFO: stdout 2022-05-16T04:07:16.273237:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.count.pass.network_measures.txt 220516-04:07:16,273 nipype.interface INFO: stdout 2022-05-16T04:07:16.273237:connectivity_threshold=0.001 220516-04:07:16,273 nipype.interface INFO: stdout 2022-05-16T04:07:16.273237:count tracks by passing 220516-04:07:16,273 nipype.interface INFO: stdout 2022-05-16T04:07:16.273237:calculate matrix using ncount 220516-04:07:19,952 nipype.interface INFO: stdout 2022-05-16T04:07:19.952799:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.ncount.pass.connectivity.mat 220516-04:07:19,953 nipype.interface INFO: stdout 2022-05-16T04:07:19.953155:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.ncount.pass.connectogram.txt 220516-04:07:19,953 nipype.interface INFO: stdout 2022-05-16T04:07:19.953155:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.ncount.pass.network_measures.txt 220516-04:07:19,953 nipype.interface INFO: stdout 2022-05-16T04:07:19.953155:connectivity_threshold=0.001 220516-04:07:19,953 nipype.interface INFO: stdout 2022-05-16T04:07:19.953155:count tracks by passing 220516-04:07:19,953 nipype.interface INFO: stdout 2022-05-16T04:07:19.953155:calculate matrix using mean_length 220516-04:07:23,650 nipype.interface INFO: stdout 2022-05-16T04:07:23.650067:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.mean_length.pass.connectivity.mat 220516-04:07:23,650 nipype.interface INFO: stdout 2022-05-16T04:07:23.650428:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.mean_length.pass.connectogram.txt 220516-04:07:23,650 nipype.interface INFO: stdout 2022-05-16T04:07:23.650428:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.mean_length.pass.network_measures.txt 220516-04:07:23,650 nipype.interface INFO: stdout 2022-05-16T04:07:23.650428:connectivity_threshold=0.001 220516-04:07:23,650 nipype.interface INFO: stdout 2022-05-16T04:07:23.650428:count tracks by passing 220516-04:07:23,650 nipype.interface INFO: stdout 2022-05-16T04:07:23.650428:calculate matrix using gfa 220516-04:07:35,229 nipype.interface INFO: stdout 2022-05-16T04:07:35.228960:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.gfa.pass.connectivity.mat 220516-04:07:35,230 nipype.interface INFO: stdout 2022-05-16T04:07:35.230775:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.gfa.pass.connectogram.txt 220516-04:07:35,232 nipype.interface INFO: stdout 2022-05-16T04:07:35.232640:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.gfa.pass.network_measures.txt 220516-04:07:35,237 nipype.interface INFO: stdout 2022-05-16T04:07:35.237905:connectivity_threshold=0.001 220516-04:07:35,238 nipype.interface INFO: stdout 2022-05-16T04:07:35.237905:count tracks by ending 220516-04:07:35,238 nipype.interface INFO: stdout 2022-05-16T04:07:35.237905:calculate matrix using count 220516-04:07:36,35 nipype.interface INFO: stdout 2022-05-16T04:07:36.035905:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.count.end.connectivity.mat 220516-04:07:36,37 nipype.interface INFO: stdout 2022-05-16T04:07:36.037354:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.count.end.connectogram.txt 220516-04:07:36,37 nipype.interface INFO: stdout 2022-05-16T04:07:36.037541:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.count.end.network_measures.txt 220516-04:07:36,37 nipype.interface INFO: stdout 2022-05-16T04:07:36.037541:connectivity_threshold=0.001 220516-04:07:36,37 nipype.interface INFO: stdout 2022-05-16T04:07:36.037541:count tracks by ending 220516-04:07:36,37 nipype.interface INFO: stdout 2022-05-16T04:07:36.037541:calculate matrix using ncount 220516-04:07:36,791 nipype.interface INFO: stdout 2022-05-16T04:07:36.791689:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.ncount.end.connectivity.mat 220516-04:07:36,792 nipype.interface INFO: stdout 2022-05-16T04:07:36.792034:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.ncount.end.connectogram.txt 220516-04:07:36,792 nipype.interface INFO: stdout 2022-05-16T04:07:36.792034:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.ncount.end.network_measures.txt 220516-04:07:36,792 nipype.interface INFO: stdout 2022-05-16T04:07:36.792034:connectivity_threshold=0.001 220516-04:07:36,792 nipype.interface INFO: stdout 2022-05-16T04:07:36.792034:count tracks by ending 220516-04:07:36,792 nipype.interface INFO: stdout 2022-05-16T04:07:36.792034:calculate matrix using mean_length 220516-04:07:37,525 nipype.interface INFO: stdout 2022-05-16T04:07:37.525380:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.mean_length.end.connectivity.mat 220516-04:07:37,525 nipype.interface INFO: stdout 2022-05-16T04:07:37.525702:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.mean_length.end.connectogram.txt 220516-04:07:37,525 nipype.interface INFO: stdout 2022-05-16T04:07:37.525702:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.mean_length.end.network_measures.txt 220516-04:07:37,525 nipype.interface INFO: stdout 2022-05-16T04:07:37.525702:connectivity_threshold=0.001 220516-04:07:37,526 nipype.interface INFO: stdout 2022-05-16T04:07:37.525702:count tracks by ending 220516-04:07:37,526 nipype.interface INFO: stdout 2022-05-16T04:07:37.525702:calculate matrix using gfa 220516-04:07:46,61 nipype.interface INFO: stdout 2022-05-16T04:07:46.061831:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.gfa.end.connectivity.mat 220516-04:07:46,63 nipype.interface INFO: stdout 2022-05-16T04:07:46.063618:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.gfa.end.connectogram.txt 220516-04:07:46,65 nipype.interface INFO: stdout 2022-05-16T04:07:46.065594:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/schaefer400x7/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.schaefer400x7MNI_lps_to_dwi.gfa.end.network_measures.txt 220516-04:07:46,517 nipype.interface INFO: stdout 2022-05-16T04:07:46.517906:Warning: --method is not used. Please check command line syntax. 220516-04:07:46,518 nipype.interface INFO: stdout 2022-05-16T04:07:46.517906:Warning: --thread_count is not used. Please check command line syntax. 220516-04:07:46,518 nipype.interface INFO: stdout 2022-05-16T04:07:46.517906:Warning: --thread_count is not used. Please check command line syntax. 220516-04:07:46,892 nipype.workflow INFO: [Node] Finished "schaefer400x7", elapsed time 54.133752s. 220516-04:07:46,900 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.brainnetome246" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246". 220516-04:07:46,908 nipype.workflow INFO: [Node] Executing "brainnetome246" <qsiprep.interfaces.dsi_studio.DSIStudioConnectivityMatrix> 220516-04:07:46,992 nipype.interface INFO: stdout 2022-05-16T04:07:46.992316:DSI Studio Feb 22 2022, Fang-Cheng Yeh 220516-04:07:46,993 nipype.interface INFO: stdout 2022-05-16T04:07:46.993552:source=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz 220516-04:07:46,993 nipype.interface INFO: stdout 2022-05-16T04:07:46.993552:action=ana 220516-04:07:46,993 nipype.interface INFO: stdout 2022-05-16T04:07:46.993861:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz... 220516-04:07:48,300 nipype.interface INFO: stdout 2022-05-16T04:07:48.300455:tract=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:07:48,300 nipype.interface INFO: stdout 2022-05-16T04:07:48.300455:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz... 220516-04:07:48,300 nipype.interface INFO: stdout 2022-05-16T04:07:48.300455:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz 220516-04:08:06,578 nipype.interface INFO: stdout 2022-05-16T04:08:06.578869:/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/tractography/tracking/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.trk.gz loaded 220516-04:08:06,874 nipype.interface INFO: stdout 2022-05-16T04:08:06.874856:connectivity=/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz 220516-04:08:06,875 nipype.interface INFO: stdout 2022-05-16T04:08:06.874856:connectivity_type=pass,end 220516-04:08:06,875 nipype.interface INFO: stdout 2022-05-16T04:08:06.874856:connectivity_value=count,ncount,mean_length,gfa 220516-04:08:06,875 nipype.interface INFO: stdout 2022-05-16T04:08:06.874856:loading /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/brainnetome246MNI_lps_to_dwi.nii.gz 220516-04:08:06,893 nipype.interface INFO: stdout 2022-05-16T04:08:06.893516:DWI dimension=(104,104,72) 220516-04:08:06,893 nipype.interface INFO: stdout 2022-05-16T04:08:06.893516:NIFTI dimension=(104,104,72) 220516-04:08:06,895 nipype.interface INFO: stdout 2022-05-16T04:08:06.895259:nifti loaded as multiple ROI file 220516-04:08:06,895 nipype.interface INFO: stdout 2022-05-16T04:08:06.895259:looking for region label file 220516-04:08:06,895 nipype.interface INFO: stdout 2022-05-16T04:08:06.895259:no label file found. Use default ROI numbering. 220516-04:08:06,896 nipype.interface INFO: stdout 2022-05-16T04:08:06.896450:a total of 7 regions are loaded. 220516-04:08:06,923 nipype.interface INFO: stdout 2022-05-16T04:08:06.923225:connectivity_threshold=0.001 220516-04:08:06,923 nipype.interface INFO: stdout 2022-05-16T04:08:06.923225:count tracks by passing 220516-04:08:06,923 nipype.interface INFO: stdout 2022-05-16T04:08:06.923225:calculate matrix using count 220516-04:08:10,594 nipype.interface INFO: stdout 2022-05-16T04:08:10.594113:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.count.pass.connectivity.mat 220516-04:08:10,594 nipype.interface INFO: stdout 2022-05-16T04:08:10.594533:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.count.pass.connectogram.txt 220516-04:08:10,594 nipype.interface INFO: stdout 2022-05-16T04:08:10.594533:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.count.pass.network_measures.txt 220516-04:08:10,594 nipype.interface INFO: stdout 2022-05-16T04:08:10.594533:connectivity_threshold=0.001 220516-04:08:10,594 nipype.interface INFO: stdout 2022-05-16T04:08:10.594533:count tracks by passing 220516-04:08:10,595 nipype.interface INFO: stdout 2022-05-16T04:08:10.594533:calculate matrix using ncount 220516-04:08:14,274 nipype.interface INFO: stdout 2022-05-16T04:08:14.274446:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.ncount.pass.connectivity.mat 220516-04:08:14,274 nipype.interface INFO: stdout 2022-05-16T04:08:14.274822:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.ncount.pass.connectogram.txt 220516-04:08:14,275 nipype.interface INFO: stdout 2022-05-16T04:08:14.274822:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.ncount.pass.network_measures.txt 220516-04:08:14,275 nipype.interface INFO: stdout 2022-05-16T04:08:14.274822:connectivity_threshold=0.001 220516-04:08:14,275 nipype.interface INFO: stdout 2022-05-16T04:08:14.274822:count tracks by passing 220516-04:08:14,275 nipype.interface INFO: stdout 2022-05-16T04:08:14.274822:calculate matrix using mean_length 220516-04:08:17,958 nipype.interface INFO: stdout 2022-05-16T04:08:17.958340:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.mean_length.pass.connectivity.mat 220516-04:08:17,958 nipype.interface INFO: stdout 2022-05-16T04:08:17.958726:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.mean_length.pass.connectogram.txt 220516-04:08:17,958 nipype.interface INFO: stdout 2022-05-16T04:08:17.958726:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.mean_length.pass.network_measures.txt 220516-04:08:17,959 nipype.interface INFO: stdout 2022-05-16T04:08:17.958726:connectivity_threshold=0.001 220516-04:08:17,959 nipype.interface INFO: stdout 2022-05-16T04:08:17.958726:count tracks by passing 220516-04:08:17,959 nipype.interface INFO: stdout 2022-05-16T04:08:17.958726:calculate matrix using gfa 220516-04:08:29,214 nipype.interface INFO: stdout 2022-05-16T04:08:29.214405:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.gfa.pass.connectivity.mat 220516-04:08:29,216 nipype.interface INFO: stdout 2022-05-16T04:08:29.216400:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.gfa.pass.connectogram.txt 220516-04:08:29,218 nipype.interface INFO: stdout 2022-05-16T04:08:29.218220:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.gfa.pass.network_measures.txt 220516-04:08:29,223 nipype.interface INFO: stdout 2022-05-16T04:08:29.223520:connectivity_threshold=0.001 220516-04:08:29,223 nipype.interface INFO: stdout 2022-05-16T04:08:29.223520:count tracks by ending 220516-04:08:29,223 nipype.interface INFO: stdout 2022-05-16T04:08:29.223520:calculate matrix using count 220516-04:08:30,31 nipype.interface INFO: stdout 2022-05-16T04:08:30.031162:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.count.end.connectivity.mat 220516-04:08:30,32 nipype.interface INFO: stdout 2022-05-16T04:08:30.032593:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.count.end.connectogram.txt 220516-04:08:30,32 nipype.interface INFO: stdout 2022-05-16T04:08:30.032797:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.count.end.network_measures.txt 220516-04:08:30,32 nipype.interface INFO: stdout 2022-05-16T04:08:30.032797:connectivity_threshold=0.001 220516-04:08:30,33 nipype.interface INFO: stdout 2022-05-16T04:08:30.032797:count tracks by ending 220516-04:08:30,33 nipype.interface INFO: stdout 2022-05-16T04:08:30.032797:calculate matrix using ncount 220516-04:08:30,804 nipype.interface INFO: stdout 2022-05-16T04:08:30.804546:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.ncount.end.connectivity.mat 220516-04:08:30,805 nipype.interface INFO: stdout 2022-05-16T04:08:30.804934:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.ncount.end.connectogram.txt 220516-04:08:30,805 nipype.interface INFO: stdout 2022-05-16T04:08:30.804934:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.ncount.end.network_measures.txt 220516-04:08:30,805 nipype.interface INFO: stdout 2022-05-16T04:08:30.804934:connectivity_threshold=0.001 220516-04:08:30,805 nipype.interface INFO: stdout 2022-05-16T04:08:30.804934:count tracks by ending 220516-04:08:30,805 nipype.interface INFO: stdout 2022-05-16T04:08:30.804934:calculate matrix using mean_length 220516-04:08:31,547 nipype.interface INFO: stdout 2022-05-16T04:08:31.546983:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.mean_length.end.connectivity.mat 220516-04:08:31,547 nipype.interface INFO: stdout 2022-05-16T04:08:31.546983:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.mean_length.end.connectogram.txt 220516-04:08:31,547 nipype.interface INFO: stdout 2022-05-16T04:08:31.547442:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.mean_length.end.network_measures.txt 220516-04:08:31,547 nipype.interface INFO: stdout 2022-05-16T04:08:31.547442:connectivity_threshold=0.001 220516-04:08:31,547 nipype.interface INFO: stdout 2022-05-16T04:08:31.547442:count tracks by ending 220516-04:08:31,547 nipype.interface INFO: stdout 2022-05-16T04:08:31.547442:calculate matrix using gfa 220516-04:08:39,724 nipype.interface INFO: stdout 2022-05-16T04:08:39.723959:export connectivity matrix to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.gfa.end.connectivity.mat 220516-04:08:39,725 nipype.interface INFO: stdout 2022-05-16T04:08:39.725690:export connectogram to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.gfa.end.connectogram.txt 220516-04:08:39,727 nipype.interface INFO: stdout 2022-05-16T04:08:39.727429:export network measures to /tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/brainnetome246/sub-02_space-T1w_desc-preproc_dwi.src.gz.odf.gqi.1.25.fib.gz.brainnetome246MNI_lps_to_dwi.gfa.end.network_measures.txt 220516-04:08:40,205 nipype.interface INFO: stdout 2022-05-16T04:08:40.205700:Warning: --method is not used. Please check command line syntax. 220516-04:08:40,206 nipype.interface INFO: stdout 2022-05-16T04:08:40.205700:Warning: --thread_count is not used. Please check command line syntax. 220516-04:08:40,206 nipype.interface INFO: stdout 2022-05-16T04:08:40.205700:Warning: --thread_count is not used. Please check command line syntax. 220516-04:08:40,588 nipype.workflow INFO: [Node] Finished "brainnetome246", elapsed time 53.679688s. 220516-04:08:40,594 nipype.workflow INFO: [Node] Setting-up "dsistudio_atlasgraph.merge_mats" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/calc_connectivity/dsistudio_atlasgraph/merge_mats". 220516-04:08:40,600 nipype.workflow INFO: [Node] Executing "merge_mats" <nipype.interfaces.utility.base.Merge> 220516-04:08:40,601 nipype.workflow INFO: [Node] Finished "merge_mats", elapsed time 0.000221s. 220516-04:08:40,801 nipype.workflow INFO: [Node] Finished "calc_connectivity", elapsed time 603.908695s. 220516-04:08:41,447 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_gfa" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_gfa". 220516-04:08:41,462 nipype.workflow INFO: [Node] Executing "ds_scalar_export_gfa" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:41,495 nipype.workflow INFO: [Node] Finished "ds_scalar_export_gfa", elapsed time 0.03171s. 220516-04:08:43,449 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_fa0" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_fa0". 220516-04:08:43,458 nipype.workflow INFO: [Node] Executing "ds_scalar_export_fa0" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:43,487 nipype.workflow INFO: [Node] Finished "ds_scalar_export_fa0", elapsed time 0.027366s. 220516-04:08:45,448 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_fa1" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_fa1". 220516-04:08:45,456 nipype.workflow INFO: [Node] Executing "ds_scalar_export_fa1" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:45,484 nipype.workflow INFO: [Node] Finished "ds_scalar_export_fa1", elapsed time 0.025165s. 220516-04:08:47,451 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_fa2" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_fa2". 220516-04:08:47,459 nipype.workflow INFO: [Node] Executing "ds_scalar_export_fa2" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:47,483 nipype.workflow INFO: [Node] Finished "ds_scalar_export_fa2", elapsed time 0.021719s. 220516-04:08:49,453 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_iso" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_iso". 220516-04:08:49,461 nipype.workflow INFO: [Node] Executing "ds_scalar_export_iso" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:49,491 nipype.workflow INFO: [Node] Finished "ds_scalar_export_iso", elapsed time 0.028098s. 220516-04:08:51,450 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_dti_fa" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_dti_fa". 220516-04:08:51,458 nipype.workflow INFO: [Node] Executing "ds_scalar_export_dti_fa" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:51,487 nipype.workflow INFO: [Node] Finished "ds_scalar_export_dti_fa", elapsed time 0.027278s. 220516-04:08:53,455 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_md" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_md". 220516-04:08:53,464 nipype.workflow INFO: [Node] Executing "ds_scalar_export_md" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:53,490 nipype.workflow INFO: [Node] Finished "ds_scalar_export_md", elapsed time 0.024958s. 220516-04:08:55,457 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_rd" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_rd". 220516-04:08:55,465 nipype.workflow INFO: [Node] Executing "ds_scalar_export_rd" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:55,495 nipype.workflow INFO: [Node] Finished "ds_scalar_export_rd", elapsed time 0.027632s. 220516-04:08:57,457 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.scalar_export.ds_scalar_export_ad" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/scalar_export/ds_scalar_export_ad". 220516-04:08:57,466 nipype.workflow INFO: [Node] Executing "ds_scalar_export_ad" <qsiprep.interfaces.bids.ReconDerivativesDataSink> 220516-04:08:57,494 nipype.workflow INFO: [Node] Finished "ds_scalar_export_ad", elapsed time 0.026806s. 220516-04:08:59,461 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-02_dsistudio_pipeline.sub_02_space_T1w_desc_preproc_recon_wf.streamline_connectivity.plot_connectivity" in "/tmp/work/qsirecon_wf/sub-02_dsistudio_pipeline/sub_02_space_T1w_desc_preproc_recon_wf/streamline_connectivity/plot_connectivity". 220516-04:08:59,468 nipype.workflow INFO: [Node] Executing "plot_connectivity" <qsiprep.interfaces.reports.ConnectivityReport> 220516-04:09:01,113 nipype.workflow INFO: [Node] Finished "plot_connectivity", elapsed time 1.643957s.