rubina@DESKTOP-QRBPHG4:~$ fmriprep-docker /mnt/c/Users/rubin/BIDS /mnt/c/Users/rubin/derivatives1 participant --participant-label R0120062 --fs-license-file /mnt/c/Users/rubin/fs-license/license.txt --low-mem
Warning: <8GB of RAM is available within your Docker environment.
Some parts of fMRIPrep may fail to complete.
Continue anyway? [y/N]y
RUNNING: docker run --rm -e DOCKER_VERSION_8395080871=20.10.8 -it -v /mnt/c/Users/rubin/fs-license/license.txt:/opt/freesurfer/license.txt:ro -v /mnt/c/Users/rubin/BIDS:/data:ro -v /mnt/c/Users/rubin/derivatives1:/out nipreps/fmriprep:20.2.2 /data /out participant --participant-label R0120062 --low-mem
You are using fMRIPrep-20.2.2, and a newer version of fMRIPrep is available: 20.2.3.
Please check out our documentation about how and when to upgrade:
https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
bids-validator@1.4.0

        1: [WARN] The Authors field of dataset_description.json should contain an array of fields - with one author per field. This was triggered based on the presence of only one author field. Please ignore if all contributors are already properly listed. (code: 102 - TOO_FEW_AUTHORS)

        Please visit https://neurostars.org/search?q=TOO_FEW_AUTHORS for existing conversations about this issue.


        Summary:                 Available Tasks:        Available Modalities:
        276 Files, 6.06GB        motor                   T1w
        34 - Subjects                                    bold
        1 - Session


        If you have any questions, please post on https://neurostars.org/tags/bids.

210903-08:56:54,741 nipype.workflow WARNING:
         Previous output generated by version 0+unknown found.
210903-08:56:54,987 nipype.workflow IMPORTANT:

    Running fMRIPREP version 20.2.2:
      * BIDS dataset path: /data.
      * Participant list: ['R0120062'].
      * Run identifier: 20210903-085644_3817570b-8093-4a42-b7b8-ffc1c2a2149b.
      * Output spaces: MNI152NLin2009cAsym:res-native.
      * Pre-run FreeSurfer's SUBJECTS_DIR: /out/freesurfer.
210903-08:56:55,692 nipype.workflow INFO:
         No single-band-reference found for sub-R0120062_task-motor_run-1_bold.nii.
210903-08:56:56,36 nipype.workflow IMPORTANT:
         Slice-timing correction will be included.
210903-08:56:56,111 nipype.workflow INFO:
         No single-band-reference found for sub-R0120062_task-motor_run-2_bold.nii.
210903-08:56:56,280 nipype.workflow IMPORTANT:
         Slice-timing correction will be included.
210903-08:56:56,349 nipype.workflow INFO:
         No single-band-reference found for sub-R0120062_task-motor_run-3_bold.nii.
210903-08:56:56,514 nipype.workflow IMPORTANT:
         Slice-timing correction will be included.
210903-08:56:58,353 nipype.workflow INFO:
         fMRIPrep workflow graph with 781 nodes built successfully.
210903-08:57:06,296 nipype.workflow IMPORTANT:
         fMRIPrep started!
210903-08:57:07,276 nipype.workflow WARNING:
         Some nodes exceed the total amount of memory available (5.07GB).
210903-08:57:09,620 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.full_wm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/full_wm".
210903-08:57:09,626 nipype.workflow INFO:
         [Node] Running "full_wm" ("nipype.interfaces.utility.wrappers.Function")
210903-08:57:09,779 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl".
210903-08:57:09,784 nipype.workflow INFO:
         [Node] Running "lap_tmpl" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1
210903-08:57:10,462 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.full_wm".
210903-08:57:10,828 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl".
210903-08:57:10,830 nipype.workflow INFO:
         [Node] Running "res_tmpl" ("niworkflows.interfaces.images.RegridToZooms")
210903-08:57:11,57 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.bidssrc" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/bidssrc".
210903-08:57:11,87 nipype.workflow INFO:
         [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber")
210903-08:57:11,89 nipype.interface INFO:
         No "t2w" images found for sub-R0120062
210903-08:57:11,89 nipype.interface INFO:
         No "flair" images found for sub-R0120062
210903-08:57:11,89 nipype.interface INFO:
         No "fmap" images found for sub-R0120062
210903-08:57:11,89 nipype.interface INFO:
         No "sbref" images found for sub-R0120062
210903-08:57:11,89 nipype.interface INFO:
         No "roi" images found for sub-R0120062
210903-08:57:11,102 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.bidssrc".
210903-08:57:11,372 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.func_derivatives_wf.raw_sources" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/func_derivatives_wf/raw_sources".
210903-08:57:11,385 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.val_bold" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/val_bold".
210903-08:57:11,390 nipype.workflow INFO:
         [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210903-08:57:11,398 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.func_derivatives_wf.raw_sources".
210903-08:57:11,407 nipype.workflow INFO:
         [Node] Setting-up "_val_bold0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/val_bold/mapflow/_val_bold0".
210903-08:57:11,420 nipype.workflow INFO:
         [Node] Running "_val_bold0" ("niworkflows.interfaces.images.ValidateImage")
210903-08:57:11,478 nipype.workflow INFO:
         [Node] Finished "_val_bold0".
210903-08:57:11,480 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.val_bold".
210903-08:57:11,992 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl".
210903-08:57:13,364 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.func_derivatives_wf.raw_sources" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/func_derivatives_wf/raw_sources".
210903-08:57:13,372 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.val_bold" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/val_bold".
210903-08:57:13,372 nipype.workflow INFO:
         [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210903-08:57:13,372 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.func_derivatives_wf.raw_sources" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/func_derivatives_wf/raw_sources".
210903-08:57:13,376 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.func_derivatives_wf.raw_sources".
210903-08:57:13,383 nipype.workflow INFO:
         [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210903-08:57:13,386 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.func_derivatives_wf.raw_sources".
210903-08:57:13,390 nipype.workflow INFO:
         [Node] Setting-up "_val_bold0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/val_bold/mapflow/_val_bold0".
210903-08:57:13,403 nipype.workflow INFO:
         [Node] Running "_val_bold0" ("niworkflows.interfaces.images.ValidateImage")
210903-08:57:13,417 nipype.workflow INFO:
         [Node] Finished "_val_bold0".
210903-08:57:13,419 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.val_bold".
210903-08:57:16,334 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.val_bold" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/val_bold".
210903-08:57:16,357 nipype.workflow INFO:
         [Node] Setting-up "_val_bold0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/val_bold/mapflow/_val_bold0".
210903-08:57:16,372 nipype.workflow INFO:
         [Node] Running "_val_bold0" ("niworkflows.interfaces.images.ValidateImage")
210903-08:57:16,389 nipype.workflow INFO:
         [Node] Finished "_val_bold0".
210903-08:57:16,391 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.val_bold".
210903-08:57:16,393 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_template_wf/t1w_ref_dimensions".
210903-08:57:16,412 nipype.workflow INFO:
         [Node] Running "t1w_ref_dimensions" ("niworkflows.interfaces.images.TemplateDimensions")
210903-08:57:16,433 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions".
210903-08:57:16,661 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.bids_info" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/bids_info".
210903-08:57:16,667 nipype.workflow INFO:
         [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo")
210903-08:57:16,676 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.bids_info".
210903-08:57:17,480 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/gen_ref".
210903-08:57:17,497 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210903-08:57:17,693 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/gen_ref".
210903-08:57:17,702 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.gen_ref".
210903-08:57:17,715 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210903-08:57:17,873 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.gen_ref".
210903-08:57:17,917 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/gen_ref".
210903-08:57:17,938 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210903-08:57:18,77 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.gen_ref".
210903-08:57:18,215 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl".
210903-08:57:19,374 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl".
210903-08:57:19,378 nipype.workflow INFO:
         [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge")
210903-08:57:19,382 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl".
210903-08:57:19,883 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.fs_isrunning" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/fs_isrunning".
210903-08:57:19,890 nipype.workflow INFO:
         [Node] Running "fs_isrunning" ("nipype.interfaces.utility.wrappers.Function")
210903-08:57:19,893 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_template_wf.t1w_conform" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_template_wf/t1w_conform".
210903-08:57:19,899 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.fs_isrunning".
210903-08:57:19,919 nipype.workflow INFO:
         [Node] Setting-up "_t1w_conform0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_template_wf/t1w_conform/mapflow/_t1w_conform0".
210903-08:57:19,935 nipype.workflow INFO:
         [Node] Running "_t1w_conform0" ("niworkflows.interfaces.images.Conform")
210903-08:57:19,955 nipype.workflow INFO:
         [Node] Finished "_t1w_conform0".
210903-08:57:19,956 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_template_wf.t1w_conform".
210903-08:57:19,982 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources".
210903-08:57:20,631 nipype.workflow INFO:
         [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
210903-08:57:20,633 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources".
210903-08:57:21,433 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_hmc_wf.mcflirt" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_hmc_wf/mcflirt".210903-08:57:21,433 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff".

210903-08:57:21,438 nipype.workflow INFO:
         [Node] Running "init_aff" ("nipype.interfaces.ants.utils.AI"), a CommandLine Interface with command:
antsAI -c [10,1e-06,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.2] -o initialization.mat -p 0 -s [20,0.12] -g [40.0,0x40x40] -t Affine[0.1] -v 1
210903-08:57:21,455 nipype.workflow INFO:
         [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /data/sub-R0120062/func/sub-R0120062_task-motor_run-1_bold.nii -out /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_hmc_wf/mcflirt/sub-R0120062_task-motor_run-1_bold_mcf.nii.gz -reffile /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz -mats -plots -rmsabs -rmsrel
210903-08:58:15,648 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_hmc_wf.mcflirt".
210903-08:58:17,745 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_hmc_wf.mcflirt" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_hmc_wf/mcflirt".
210903-08:58:17,768 nipype.workflow INFO:
         [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /data/sub-R0120062/func/sub-R0120062_task-motor_run-2_bold.nii -out /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_hmc_wf/mcflirt/sub-R0120062_task-motor_run-2_bold_mcf.nii.gz -reffile /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz -mats -plots -rmsabs -rmsrel
210903-08:59:09,315 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_hmc_wf.mcflirt".
210903-08:59:09,833 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_hmc_wf.mcflirt" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_hmc_wf/mcflirt".
210903-08:59:09,856 nipype.workflow INFO:
         [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /data/sub-R0120062/func/sub-R0120062_task-motor_run-3_bold.nii -out /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_hmc_wf/mcflirt/sub-R0120062_task-motor_run-3_bold_mcf.nii.gz -reffile /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz -mats -plots -rmsabs -rmsrel
210903-08:59:14,23 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff".
210903-08:59:15,492 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff".
210903-08:59:15,497 nipype.workflow INFO:
         [Node] Running "init_aff" ("nipype.interfaces.ants.utils.AI"), a CommandLine Interface with command:
antsAI -c [10,1e-06,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.2] -o initialization.mat -p 0 -s [20,0.12] -g [40.0,0x40x40] -t Affine[0.1] -v 1
210903-08:59:57,306 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_hmc_wf.mcflirt".
210903-08:59:57,890 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_template_wf.get1st" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_template_wf/get1st".
210903-08:59:57,902 nipype.workflow INFO:
         [Node] Running "get1st" ("nipype.interfaces.utility.base.Select")
210903-08:59:57,910 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_template_wf.get1st".
210903-08:59:59,729 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_stc_wf.slice_timing_correction" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_stc_wf/slice_timing_correction".
210903-08:59:59,760 nipype.workflow INFO:
         [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 2 -prefix sub-R0120062_task-motor_run-1_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2s /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_stc_wf/slice_timing_correction/sub-R0120062_task-motor_run-1_bold.nii
210903-09:00:08,606 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_stc_wf.slice_timing_correction".
210903-09:00:09,554 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_hmc_wf.normalize_motion" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_hmc_wf/normalize_motion".
210903-09:00:09,570 nipype.workflow INFO:
         [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
210903-09:00:09,582 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_hmc_wf.normalize_motion".
210903-09:00:11,665 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_stc_wf.slice_timing_correction" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_stc_wf/slice_timing_correction".
210903-09:00:11,693 nipype.workflow INFO:
         [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 1 -prefix sub-R0120062_task-motor_run-2_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2s /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_stc_wf/slice_timing_correction/sub-R0120062_task-motor_run-2_bold.nii
210903-09:00:20,327 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_stc_wf.slice_timing_correction".
210903-09:00:21,570 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_hmc_wf.normalize_motion" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_hmc_wf/normalize_motion".
210903-09:00:21,588 nipype.workflow INFO:
         [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
210903-09:00:21,597 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_hmc_wf.normalize_motion".
210903-09:00:23,680 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_stc_wf.slice_timing_correction" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_stc_wf/slice_timing_correction".
210903-09:00:23,706 nipype.workflow INFO:
         [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -ignore 2 -prefix sub-R0120062_task-motor_run-3_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2s /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_stc_wf/slice_timing_correction/sub-R0120062_task-motor_run-3_bold.nii
210903-09:00:32,60 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_stc_wf.slice_timing_correction".
210903-09:00:33,594 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_hmc_wf.normalize_motion" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_hmc_wf/normalize_motion".
210903-09:00:33,613 nipype.workflow INFO:
         [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
210903-09:00:33,624 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_hmc_wf.normalize_motion".
210903-09:00:35,824 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_stc_wf.copy_xform" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_stc_wf/copy_xform".
210903-09:00:35,850 nipype.workflow INFO:
         [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:00:38,235 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_stc_wf.copy_xform".
210903-09:00:39,590 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.fdisp" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_confounds_wf/fdisp".
210903-09:00:39,596 nipype.workflow INFO:
         [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
210903-09:00:39,606 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.fdisp".
210903-09:00:41,693 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_stc_wf.copy_xform" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_stc_wf/copy_xform".
210903-09:00:41,721 nipype.workflow INFO:
         [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:00:44,882 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_stc_wf.copy_xform".
210903-09:00:45,596 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.fdisp" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_confounds_wf/fdisp".
210903-09:00:45,602 nipype.workflow INFO:
         [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
210903-09:00:45,610 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.fdisp".
210903-09:00:47,692 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_stc_wf.copy_xform" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_stc_wf/copy_xform".
210903-09:00:47,723 nipype.workflow INFO:
         [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:00:50,77 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_stc_wf.copy_xform".
210903-09:00:51,612 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.fdisp" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_confounds_wf/fdisp".
210903-09:00:51,616 nipype.workflow INFO:
         [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
210903-09:00:51,623 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.fdisp".
210903-09:00:53,714 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/truncate_images".
210903-09:00:53,755 nipype.workflow INFO:
         [Node] Setting-up "_truncate_images0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0".
210903-09:00:53,779 nipype.workflow INFO:
         [Node] Running "_truncate_images0" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_maths.nii TruncateImageIntensity /data/sub-R0120062/anat/sub-R0120062_T1w.nii 0.01 0.999 256
210903-09:00:54,683 nipype.workflow INFO:
         [Node] Finished "_truncate_images0".
210903-09:00:54,689 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.truncate_images".
210903-09:00:55,670 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/recon_config".
210903-09:00:55,993 nipype.workflow INFO:
         [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs")
210903-09:00:56,3 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.recon_config".
210903-09:00:57,606 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/fov_check".
210903-09:00:57,623 nipype.workflow INFO:
         [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function")
210903-09:00:58,19 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.fov_check".
210903-09:00:58,881 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff".
210903-09:00:59,585 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_split" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_split".
210903-09:00:59,585 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff".
210903-09:00:59,587 nipype.workflow INFO:
         [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_stc_wf/copy_xform/sub-R0120062_task-motor_run-1_bold_tshift_xform.nii.gz -t
210903-09:00:59,589 nipype.workflow INFO:
         [Node] Running "init_aff" ("nipype.interfaces.ants.utils.AI"), a CommandLine Interface with command:
antsAI -c [10,1e-06,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.2] -o initialization.mat -p 0 -s [20,0.12] -g [40.0,0x40x40] -t Affine[0.1] -v 1
210903-09:01:05,887 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_split".
210903-09:01:07,623 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_split" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_split".
210903-09:01:07,628 nipype.workflow INFO:
         [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_stc_wf/copy_xform/sub-R0120062_task-motor_run-2_bold_tshift_xform.nii.gz -t
210903-09:01:14,614 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_split".
210903-09:01:15,621 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_split" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_split".
210903-09:01:15,623 nipype.workflow INFO:
         [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
fslsplit /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_stc_wf/copy_xform/sub-R0120062_task-motor_run-3_bold_tshift_xform.nii.gz -t
210903-09:01:21,948 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_split".
210903-09:01:23,632 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_std_trans_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym.resnative/gen_ref".
210903-09:01:23,649 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
210903-09:01:23,746 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_std_trans_wf.gen_ref".
210903-09:01:25,639 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_std_trans_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym.resnative/gen_ref".
210903-09:01:25,655 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
210903-09:01:25,742 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_std_trans_wf.gen_ref".
210903-09:01:27,642 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_std_trans_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym.resnative/gen_ref".
210903-09:01:27,659 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
210903-09:01:27,744 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_std_trans_wf.gen_ref".
210903-09:02:32,80 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff".
210903-09:02:33,672 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/norm".
210903-09:02:33,679 nipype.workflow INFO:
         [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
210903-09:02:35,74 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.norm".
210903-09:02:35,674 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210903-09:02:35,676 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_hmc_wf.fsl2itk" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_hmc_wf/fsl2itk".
210903-09:02:35,679 nipype.workflow INFO:
         [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg.nii.gz --interpolation BSpline --output tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210903-09:02:35,708 nipype.workflow INFO:
         [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
210903-09:02:36,381 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210903-09:02:37,707 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask".
210903-09:02:37,710 nipype.workflow INFO:
         [Node] Running "binarize_mask" ("niworkflows.interfaces.nibabel.Binarize")
210903-09:02:37,729 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask".
210903-09:02:39,701 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210903-09:02:39,706 nipype.workflow INFO:
         [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil.nii.gz
210903-09:02:39,820 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210903-09:02:43,705 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210903-09:02:43,721 nipype.workflow INFO:
         [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210903-09:02:44,653 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210903-09:02:45,703 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210903-09:02:45,707 nipype.workflow INFO:
         [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet ref_bold_corrected.nii.gz ref_bold_corrected_brain.nii.gz -f 0.20 -m
210903-09:02:46,783 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
210903-09:02:47,701 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
210903-09:02:47,705 nipype.workflow INFO:
         [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
210903-09:02:47,918 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
210903-09:02:49,777 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
210903-09:02:49,783 nipype.workflow INFO:
         [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
210903-09:02:49,872 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
210903-09:02:50,475 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_hmc_wf.fsl2itk".
210903-09:02:51,698 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/norm".
210903-09:02:51,705 nipype.workflow INFO:
         [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
210903-09:02:51,790 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/unifize".
210903-09:02:51,793 nipype.workflow INFO:
         [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
210903-09:02:52,776 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.unifize".
210903-09:02:53,797 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
210903-09:02:53,807 nipype.workflow INFO:
         [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:02:53,864 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
210903-09:02:54,601 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.norm".
210903-09:02:55,702 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_hmc_wf.fsl2itk" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_hmc_wf/fsl2itk".
210903-09:02:55,702 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210903-09:02:55,707 nipype.workflow INFO:
         [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg.nii.gz --interpolation BSpline --output tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210903-09:02:55,739 nipype.workflow INFO:
         [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
210903-09:02:56,370 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210903-09:02:57,724 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask".
210903-09:02:57,729 nipype.workflow INFO:
         [Node] Running "binarize_mask" ("niworkflows.interfaces.nibabel.Binarize")
210903-09:02:57,746 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask".
210903-09:02:59,717 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210903-09:02:59,721 nipype.workflow INFO:
         [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil.nii.gz
210903-09:02:59,860 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210903-09:03:01,819 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
210903-09:03:01,824 nipype.workflow INFO:
         [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
210903-09:03:01,955 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
210903-09:03:03,721 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210903-09:03:03,738 nipype.workflow INFO:
         [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210903-09:03:04,584 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210903-09:03:05,732 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210903-09:03:05,736 nipype.workflow INFO:
         [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet ref_bold_corrected.nii.gz ref_bold_corrected_brain.nii.gz -f 0.20 -m
210903-09:03:06,822 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
210903-09:03:07,729 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
210903-09:03:07,732 nipype.workflow INFO:
         [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
210903-09:03:07,957 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
210903-09:03:09,731 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
210903-09:03:09,736 nipype.workflow INFO:
         [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
210903-09:03:09,813 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
210903-09:03:10,918 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_hmc_wf.fsl2itk".
210903-09:03:11,707 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/norm".
210903-09:03:11,713 nipype.workflow INFO:
         [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
210903-09:03:11,793 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/unifize".
210903-09:03:11,796 nipype.workflow INFO:
         [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
210903-09:03:12,653 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.unifize".
210903-09:03:13,114 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.norm".
210903-09:03:13,722 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210903-09:03:13,724 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_hmc_wf.fsl2itk" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_hmc_wf/fsl2itk".
210903-09:03:13,727 nipype.workflow INFO:
         [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg.nii.gz --interpolation BSpline --output tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210903-09:03:13,757 nipype.workflow INFO:
         [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
210903-09:03:14,417 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210903-09:03:15,783 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask".
210903-09:03:15,791 nipype.workflow INFO:
         [Node] Running "binarize_mask" ("niworkflows.interfaces.nibabel.Binarize")
210903-09:03:15,828 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask".
210903-09:03:17,734 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210903-09:03:17,737 nipype.workflow INFO:
         [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil.nii.gz
210903-09:03:17,844 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210903-09:03:19,852 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
210903-09:03:19,855 nipype.workflow INFO:
         [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:03:19,876 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
210903-09:03:21,735 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210903-09:03:21,751 nipype.workflow INFO:
         [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210903-09:03:22,608 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210903-09:03:23,750 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210903-09:03:23,756 nipype.workflow INFO:
         [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet ref_bold_corrected.nii.gz ref_bold_corrected_brain.nii.gz -f 0.20 -m
210903-09:03:24,855 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
210903-09:03:25,731 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
210903-09:03:25,736 nipype.workflow INFO:
         [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
210903-09:03:25,932 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
210903-09:03:27,734 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
210903-09:03:27,737 nipype.workflow INFO:
         [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
210903-09:03:27,818 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
210903-09:03:28,538 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_hmc_wf.fsl2itk".
210903-09:03:29,787 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/unifize".
210903-09:03:29,787 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4".
210903-09:03:29,790 nipype.workflow INFO:
         [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
210903-09:03:29,791 nipype.workflow INFO:
         [Node] Setting-up "_inu_n40" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40".
210903-09:03:29,793 nipype.workflow INFO:
         [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-R0120062_T1w_maths.nii --convergence [ 50x50x50x50, 1e-07 ] --output sub-R0120062_T1w_maths_corrected.nii --shrink-factor 4
210903-09:03:30,704 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.unifize".
210903-09:03:31,770 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
210903-09:03:31,773 nipype.workflow INFO:
         [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:03:31,800 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
210903-09:03:33,751 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
210903-09:03:33,755 nipype.workflow INFO:
         [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
210903-09:03:33,875 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
210903-09:03:35,752 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
210903-09:03:35,758 nipype.workflow INFO:
         [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
210903-09:03:35,894 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
210903-09:03:37,756 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
210903-09:03:37,759 nipype.workflow INFO:
         [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:03:37,773 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
210903-09:03:39,761 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
210903-09:03:39,766 nipype.workflow INFO:
         [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:03:39,783 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
210903-09:03:41,786 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
210903-09:03:41,790 nipype.workflow INFO:
         [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
210903-09:03:41,808 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
210903-09:03:43,764 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks".
210903-09:03:43,769 nipype.workflow INFO:
         [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
210903-09:03:43,852 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks".
210903-09:03:45,766 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks".
210903-09:03:45,769 nipype.workflow INFO:
         [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
210903-09:03:45,858 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks".
210903-09:03:47,769 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks".
210903-09:03:47,773 nipype.workflow INFO:
         [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
210903-09:03:47,854 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks".
210903-09:03:49,780 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask".
210903-09:03:49,783 nipype.workflow INFO:
         [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
210903-09:03:49,902 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask".
210903-09:03:51,776 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask".
210903-09:03:51,780 nipype.workflow INFO:
         [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
210903-09:03:51,871 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask".
210903-09:03:53,803 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask".
210903-09:03:53,807 nipype.workflow INFO:
         [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/initial_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
210903-09:03:53,900 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask".
210903-09:03:59,834 nipype.workflow INFO:
         [Node] Finished "_inu_n40".
210903-09:03:59,837 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.inu_n4".
210903-09:04:01,817 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon1".
210903-09:04:01,855 nipype.workflow INFO:
         [Node] Running "autorecon1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
recon-all -autorecon1 -i /data/sub-R0120062/anat/sub-R0120062_T1w.nii -noskullstrip -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-09:11:28,778 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon1".
210903-09:11:30,231 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/res_target".
210903-09:11:30,231 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_bold_trans_wf.bold_transform" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_bold_trans_wf/bold_transform".
210903-09:11:30,237 nipype.workflow INFO:
         [Node] Running "res_target" ("niworkflows.interfaces.images.RegridToZooms")
210903-09:11:30,296 nipype.workflow INFO:
         [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
210903-09:11:31,524 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.res_target".
210903-09:11:32,274 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/lap_target".
210903-09:11:32,279 nipype.workflow INFO:
         [Node] Running "lap_target" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_maths_corrected_maths.nii Laplacian /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-R0120062_T1w_maths_corrected.nii 1.5 1
210903-09:11:35,56 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.lap_target".
210903-09:11:36,306 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm".
210903-09:11:36,590 nipype.workflow INFO:
         [Node] Running "fsnative2t1w_xfm" ("niworkflows.interfaces.freesurfer.PatchedRobustRegister"), a CommandLine Interface with command:
mri_robust_register --satit --iscale --lta /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --mov /out/freesurfer/sub-R0120062/mri/T1.mgz --dst /data/sub-R0120062/anat/sub-R0120062_T1w.nii
210903-09:12:58,501 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_bold_trans_wf.bold_transform".
210903-09:13:00,361 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_bold_trans_wf.bold_transform" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_bold_trans_wf/bold_transform".
210903-09:13:00,398 nipype.workflow INFO:
         [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
210903-09:13:04,604 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm".
210903-09:13:06,523 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_bold_trans_wf.merge" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_bold_trans_wf/merge".
210903-09:13:06,578 nipype.workflow INFO:
         [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge")
210903-09:13:15,460 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_bold_trans_wf.merge".
210903-09:13:16,496 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/mrg_target".
210903-09:13:16,512 nipype.workflow INFO:
         [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge")
210903-09:13:16,516 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.mrg_target".
210903-09:13:18,381 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/t1w2fsnative_xfm".
210903-09:13:18,386 nipype.workflow INFO:
         [Node] Running "t1w2fsnative_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command:
lta_convert --inlta /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --invert --outlta /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/t1w2fsnative_xfm/out.lta
210903-09:13:18,477 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm".
210903-09:13:20,474 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.val_bold" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/val_bold".
210903-09:13:20,477 nipype.workflow INFO:
         [Node] Setting-up "_val_bold0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/val_bold/mapflow/_val_bold0".
210903-09:13:20,479 nipype.workflow INFO:
         [Node] Running "_val_bold0" ("niworkflows.interfaces.images.ValidateImage")
210903-09:13:20,484 nipype.workflow INFO:
         [Node] Finished "_val_bold0".
210903-09:13:20,487 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.val_bold".
210903-09:13:22,627 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/gen_ref".
210903-09:13:22,631 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210903-09:13:22,929 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.gen_ref".
210903-09:14:10,945 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_bold_trans_wf.bold_transform".
210903-09:14:12,394 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_bold_trans_wf.bold_transform" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_bold_trans_wf/bold_transform".
210903-09:14:12,400 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_bold_trans_wf.merge" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_bold_trans_wf/merge".
210903-09:14:12,427 nipype.workflow INFO:
         [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
210903-09:14:12,441 nipype.workflow INFO:
         [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge")
210903-09:14:21,716 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_bold_trans_wf.merge".
210903-09:14:22,465 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.val_bold" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/val_bold".
210903-09:14:22,470 nipype.workflow INFO:
         [Node] Setting-up "_val_bold0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/val_bold/mapflow/_val_bold0".
210903-09:14:22,473 nipype.workflow INFO:
         [Node] Running "_val_bold0" ("niworkflows.interfaces.images.ValidateImage")
210903-09:14:22,477 nipype.workflow INFO:
         [Node] Finished "_val_bold0".
210903-09:14:22,480 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.val_bold".
210903-09:14:24,505 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/gen_ref".
210903-09:14:24,509 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210903-09:14:24,717 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.gen_ref".
210903-09:15:22,697 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_bold_trans_wf.bold_transform".
210903-09:15:24,470 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/init_aff".
210903-09:15:24,472 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_bold_trans_wf.merge" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_bold_trans_wf/merge".
210903-09:15:24,475 nipype.workflow INFO:
         [Node] Running "init_aff" ("nipype.interfaces.ants.utils.AI"), a CommandLine Interface with command:
antsAI -c [10,1e-06,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_regrid.nii.gz,/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-R0120062_T1w_maths_corrected_regrid.nii,32,Regular,0.25] -o initialization.mat -p 0 -s [15,0.1] -g [40.0,0x40x40] -t Affine[0.1] -v 1
210903-09:15:24,513 nipype.workflow INFO:
         [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge")
210903-09:15:33,1 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_bold_trans_wf.merge".
210903-09:15:34,552 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.val_bold" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/val_bold".
210903-09:15:34,559 nipype.workflow INFO:
         [Node] Setting-up "_val_bold0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/val_bold/mapflow/_val_bold0".
210903-09:15:34,560 nipype.workflow INFO:
         [Node] Running "_val_bold0" ("niworkflows.interfaces.images.ValidateImage")
210903-09:15:34,566 nipype.workflow INFO:
         [Node] Finished "_val_bold0".
210903-09:15:34,568 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.val_bold".
210903-09:15:36,499 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/gen_ref".
210903-09:15:36,502 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
210903-09:15:36,705 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.gen_ref".
210903-09:16:22,900 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.init_aff".
210903-09:16:24,540 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/norm".
210903-09:16:24,549 nipype.workflow INFO:
         [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-R0120062_T1w_maths_corrected.nii, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform Affine[ 0.1 ] --metric MI[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-R0120062_T1w_maths_corrected.nii, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-R0120062_T1w_maths_corrected.nii, 0.5, 4, None, 1 ] --metric CC[ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-R0120062_T1w_maths_corrected_maths.nii, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] -v --winsorize-image-intensities [ 0.025, 0.975 ]  --write-composite-transform 0
210903-11:14:43,809 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.norm".
210903-11:14:45,617 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask".
210903-11:14:45,617 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.map_wmmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/map_wmmask".
210903-11:14:45,642 nipype.workflow INFO:
         [Node] Running "map_wmmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/full_wm/summap.nii.gz --interpolation Gaussian --output summap_trans.nii.gz --reference-image /data/sub-R0120062/anat/sub-R0120062_T1w.nii --transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz
210903-11:14:45,643 nipype.workflow INFO:
         [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz --interpolation Gaussian --output tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz --reference-image /data/sub-R0120062/anat/sub-R0120062_T1w.nii --transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz
210903-11:15:03,309 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask".
210903-11:15:03,450 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.map_wmmask".
210903-11:15:03,535 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff".
210903-11:15:03,545 nipype.workflow INFO:
         [Node] Running "init_aff" ("nipype.interfaces.ants.utils.AI"), a CommandLine Interface with command:
antsAI -c [10,1e-06,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.2] -o initialization.mat -p 0 -s [20,0.12] -g [40.0,0x40x40] -t Affine[0.1] -v 1
210903-11:15:05,586 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask".
210903-11:15:05,591 nipype.workflow INFO:
         [Node] Running "thr_brainmask" ("nipype.interfaces.ants.utils.ThresholdImage"), a CommandLine Interface with command:
ThresholdImage 3 /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000
210903-11:15:07,213 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask".
210903-11:15:07,650 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.dil_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/dil_brainmask".
210903-11:15:07,656 nipype.workflow INFO:
         [Node] Running "dil_brainmask" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz MD /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 2
210903-11:15:09,344 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.dil_brainmask".
210903-11:15:09,533 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask".
210903-11:15:09,538 nipype.workflow INFO:
         [Node] Running "03_pad_mask" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 10
210903-11:15:10,183 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask".
210903-11:15:11,539 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.get_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/get_brainmask".
210903-11:15:11,542 nipype.workflow INFO:
         [Node] Running "get_brainmask" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz GetLargestComponent /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/dil_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz
210903-11:15:12,655 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.get_brainmask".
210903-11:16:38,670 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff".
210903-11:16:39,593 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff".
210903-11:16:39,600 nipype.workflow INFO:
         [Node] Running "init_aff" ("nipype.interfaces.ants.utils.AI"), a CommandLine Interface with command:
antsAI -c [10,1e-06,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.2] -o initialization.mat -p 0 -s [20,0.12] -g [40.0,0x40x40] -t Affine[0.1] -v 1
210903-11:18:04,773 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff".
210903-11:18:05,676 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff".
210903-11:18:05,681 nipype.workflow INFO:
         [Node] Running "init_aff" ("nipype.interfaces.ants.utils.AI"), a CommandLine Interface with command:
antsAI -c [10,1e-06,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.2] -o initialization.mat -p 0 -s [20,0.12] -g [40.0,0x40x40] -t Affine[0.1] -v 1
210903-11:19:29,789 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff".
210903-11:19:31,792 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final".
210903-11:19:31,806 nipype.workflow INFO:
         [Node] Setting-up "_inu_n4_final0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0".
210903-11:19:31,816 nipype.workflow INFO:
         [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /data/sub-R0120062/anat/sub-R0120062_T1w.nii --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-R0120062_T1w_corrected.nii, sub-R0120062_T1w_bias.nii ] -r --shrink-factor 4 --weight-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/map_wmmask/summap_trans.nii.gz
210903-11:19:42,601 nipype.workflow INFO:
         [Node] Finished "_inu_n4_final0".
210903-11:19:42,604 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final".
210903-11:19:43,811 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/norm".
210903-11:19:43,818 nipype.workflow INFO:
         [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
210903-11:19:43,821 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/apply_mask".
210903-11:19:43,824 nipype.workflow INFO:
         [Node] Setting-up "_apply_mask0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0".
210903-11:19:43,826 nipype.workflow INFO:
         [Node] Running "_apply_mask0" ("niworkflows.interfaces.nibabel.ApplyMask")
210903-11:19:44,76 nipype.workflow INFO:
         [Node] Finished "_apply_mask0".
210903-11:19:44,78 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.apply_mask".
210903-11:19:50,94 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.norm".
210903-11:19:51,774 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210903-11:19:51,775 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/norm".
210903-11:19:51,779 nipype.workflow INFO:
         [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg.nii.gz --interpolation BSpline --output tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210903-11:19:51,781 nipype.workflow INFO:
         [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
210903-11:19:52,416 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210903-11:19:53,399 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.norm".
210903-11:19:53,784 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/norm".
210903-11:19:53,784 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210903-11:19:53,789 nipype.workflow INFO:
         [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg.nii.gz --interpolation BSpline --output tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210903-11:19:53,791 nipype.workflow INFO:
         [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
210903-11:19:54,407 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210903-11:19:54,787 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.norm".
210903-11:19:55,782 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask".
210903-11:19:55,782 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
210903-11:19:55,782 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask".
210903-11:19:55,785 nipype.workflow INFO:
         [Node] Running "binarize_mask" ("niworkflows.interfaces.nibabel.Binarize")
210903-11:19:55,785 nipype.workflow INFO:
         [Node] Running "binarize_mask" ("niworkflows.interfaces.nibabel.Binarize")
210903-11:19:55,786 nipype.workflow INFO:
         [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg.nii.gz --interpolation BSpline --output tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
210903-11:19:55,805 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask".
210903-11:19:55,810 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask".
210903-11:19:56,284 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
210903-11:19:57,784 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask".
210903-11:19:57,785 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos".
210903-11:19:57,787 nipype.workflow INFO:
         [Node] Running "binarize_mask" ("niworkflows.interfaces.nibabel.Binarize")
210903-11:19:57,791 nipype.workflow INFO:
         [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command:
Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-R0120062_T1w_corrected.nii --likelihood-model Gaussian --mask-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/get_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-R0120062_T1w_corrected_labeled.nii,POSTERIOR_%02d.nii.gz] --use-random-seed 1
210903-11:19:57,807 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.binarize_mask".
210903-11:19:59,794 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210903-11:19:59,797 nipype.workflow INFO:
         [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil.nii.gz
210903-11:19:59,914 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210903-11:20:01,792 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210903-11:20:01,796 nipype.workflow INFO:
         [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil.nii.gz
210903-11:20:01,889 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210903-11:20:03,795 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
210903-11:20:03,798 nipype.workflow INFO:
         [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/binarize_mask/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil.nii.gz
210903-11:20:03,895 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
210903-11:20:07,794 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210903-11:20:07,820 nipype.workflow INFO:
         [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210903-11:20:08,547 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210903-11:20:09,795 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210903-11:20:09,818 nipype.workflow INFO:
         [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210903-11:20:10,587 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210903-11:20:11,796 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct".
210903-11:20:11,822 nipype.workflow INFO:
         [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-01_label-brain_probseg_trans_mask_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
210903-11:20:12,610 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct".
210903-11:20:13,810 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210903-11:20:13,813 nipype.workflow INFO:
         [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet ref_bold_corrected.nii.gz ref_bold_corrected_brain.nii.gz -f 0.20 -m
210903-11:20:14,782 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
210903-11:20:15,808 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210903-11:20:15,812 nipype.workflow INFO:
         [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet ref_bold_corrected.nii.gz ref_bold_corrected_brain.nii.gz -f 0.20 -m
210903-11:20:16,620 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos".
210903-11:20:16,769 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
210903-11:20:17,804 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm".
210903-11:20:17,807 nipype.workflow INFO:
         [Node] Running "02_pad_segm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_corrected_labeled_maths.nii PadImage /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-R0120062_T1w_corrected_labeled.nii 10
210903-11:20:17,890 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
210903-11:20:17,891 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
210903-11:20:17,892 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
210903-11:20:17,895 nipype.workflow INFO:
         [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
210903-11:20:17,897 nipype.workflow INFO:
         [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet ref_bold_corrected.nii.gz ref_bold_corrected_brain.nii.gz -f 0.20 -m
210903-11:20:17,907 nipype.workflow INFO:
         [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
210903-11:20:18,32 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm".
210903-11:20:18,161 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
210903-11:20:18,165 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
210903-11:20:18,821 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
210903-11:20:19,807 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels".
210903-11:20:19,810 nipype.workflow INFO:
         [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function")
210903-11:20:19,858 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels".
210903-11:20:21,90 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".210903-11:20:21,90 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".210903-11:20:21,90 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".


210903-11:20:21,93 nipype.workflow INFO:
         [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz210903-11:20:21,93 nipype.workflow INFO:
         [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz

210903-11:20:21,93 nipype.workflow INFO:
         [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
210903-11:20:21,190 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
210903-11:20:21,194 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
210903-11:20:21,314 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
210903-11:20:21,851 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm".
210903-11:20:21,854 nipype.workflow INFO:
         [Node] Running "05_get_wm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_corrected_labeled_maths_class-03_maths.nii GetLargestComponent /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-R0120062_T1w_corrected_labeled_maths_class-03.nii
210903-11:20:21,861 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf".210903-11:20:21,862 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm".
210903-11:20:21,865 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf".
210903-11:20:21,869 nipype.workflow INFO:
         [Node] Running "06_get_gm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_corrected_labeled_maths_class-02_maths.nii GetLargestComponent /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-R0120062_T1w_corrected_labeled_maths_class-02.nii

210903-11:20:21,878 nipype.workflow INFO:
         [Node] Running "27_depad_csf" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_corrected_labeled_maths_class-01_maths.nii PadImage /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-R0120062_T1w_corrected_labeled_maths_class-01.nii -10
210903-11:20:21,879 nipype.workflow INFO:
         [Node] Running "10_me_csf" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_corrected_labeled_maths_class-01_maths.nii ME /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-R0120062_T1w_corrected_labeled_maths_class-01.nii 10
210903-11:20:22,194 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf".
210903-11:20:22,585 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm".
210903-11:20:22,592 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm".
210903-11:20:23,883 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm".
210903-11:20:23,885 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm".
210903-11:20:23,887 nipype.workflow INFO:
         [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-R0120062_T1w_corrected_labeled_maths_class-03_maths.nii 3.0 09_relabel_wm.nii.gz
210903-11:20:23,889 nipype.workflow INFO:
         [Node] Running "07_fill_gm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_corrected_labeled_maths_class-02_maths_maths.nii FillHoles /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-R0120062_T1w_corrected_labeled_maths_class-02_maths.nii 2
210903-11:20:23,892 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
210903-11:20:23,897 nipype.workflow INFO:
         [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
210903-11:20:24,3 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
210903-11:20:24,161 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf".
210903-11:20:24,403 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm".
210903-11:20:26,127 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm".
210903-11:20:26,128 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/unifize".
210903-11:20:26,129 nipype.workflow INFO:
         [Node] Running "26_depad_wm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10
210903-11:20:26,130 nipype.workflow INFO:
         [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
210903-11:20:26,132 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/unifize".
210903-11:20:26,139 nipype.workflow INFO:
         [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
210903-11:20:26,704 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm".
210903-11:20:27,110 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.unifize".
210903-11:20:27,112 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.unifize".
210903-11:20:27,811 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.apply_wm_prior" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/apply_wm_prior".
210903-11:20:27,811 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/unifize".
210903-11:20:27,814 nipype.workflow INFO:
         [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
210903-11:20:27,815 nipype.workflow INFO:
         [Node] Running "apply_wm_prior" ("nipype.interfaces.utility.wrappers.Function")
210903-11:20:27,820 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
210903-11:20:27,823 nipype.workflow INFO:
         [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
210903-11:20:27,853 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
210903-11:20:28,245 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.apply_wm_prior".
210903-11:20:28,587 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.unifize".
210903-11:20:28,860 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm".
210903-11:20:29,864 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm".
210903-11:20:29,868 nipype.workflow INFO:
         [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-R0120062_T1w_corrected_labeled_maths_class-02_maths.nii /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-R0120062_T1w_corrected_labeled_maths_class-02_maths_maths.nii 08_mult_gm.nii.gz
210903-11:20:29,876 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.inu_n4_final" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/inu_n4_final".
210903-11:20:29,905 nipype.workflow INFO:
         [Node] Setting-up "_inu_n4_final0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/inu_n4_final/mapflow/_inu_n4_final0".
210903-11:20:29,935 nipype.workflow INFO:
         [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /data/sub-R0120062/anat/sub-R0120062_T1w.nii --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-R0120062_T1w_corrected.nii, sub-R0120062_T1w_bias.nii ] -r --shrink-factor 4 --weight-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/apply_wm_prior/prodmap.nii.gz
210903-11:20:30,573 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm".
210903-11:20:31,832 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm".
210903-11:20:31,835 nipype.workflow INFO:
         [Node] Running "11_add_gm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 08_mult_gm_maths.nii.gz addtozero /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-R0120062_T1w_corrected_labeled_maths_class-01_maths.nii
210903-11:20:35,44 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm".
210903-11:20:35,873 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm".
210903-11:20:35,879 nipype.workflow INFO:
         [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz
210903-11:20:36,482 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm".
210903-11:20:37,846 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
210903-11:20:37,852 nipype.workflow INFO:
         [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
210903-11:20:37,886 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
210903-11:20:39,844 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
210903-11:20:39,849 nipype.workflow INFO:
         [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
210903-11:20:39,876 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
210903-11:20:41,883 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm".
210903-11:20:41,888 nipype.workflow INFO:
         [Node] Running "13_add_gm_wm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz
210903-11:20:42,561 nipype.workflow INFO:
         [Node] Finished "_inu_n4_final0".
210903-11:20:42,563 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.inu_n4_final".
210903-11:20:43,880 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm".
210903-11:20:43,881 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
210903-11:20:43,885 nipype.workflow INFO:
         [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
210903-11:20:43,886 nipype.workflow INFO:
         [Node] Running "25_depad_gm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10
210903-11:20:43,887 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
210903-11:20:43,890 nipype.workflow INFO:
         [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
210903-11:20:44,171 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
210903-11:20:44,192 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
210903-11:20:44,526 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm".
210903-11:20:44,765 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm".
210903-11:20:45,831 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
210903-11:20:45,831 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2".
210903-11:20:45,831 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms".
210903-11:20:45,833 nipype.workflow INFO:
         [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function")
210903-11:20:45,834 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm".
210903-11:20:45,834 nipype.workflow INFO:
         [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
210903-11:20:45,838 nipype.workflow INFO:
         [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge")
210903-11:20:45,841 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms".
210903-11:20:45,844 nipype.workflow INFO:
         [Node] Running "24_depad_segm" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10
210903-11:20:45,944 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2".
210903-11:20:45,950 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
210903-11:20:46,302 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm".
210903-11:20:47,835 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".210903-11:20:47,835 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".

210903-11:20:47,835 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
210903-11:20:47,836 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7".
210903-11:20:47,838 nipype.workflow INFO:
         [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
210903-11:20:47,839 nipype.workflow INFO:
         [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
210903-11:20:47,839 nipype.workflow INFO:
         [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
210903-11:20:47,845 nipype.workflow INFO:
         [Node] Running "15_add_7" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz
210903-11:20:47,856 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
210903-11:20:47,860 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
210903-11:20:47,861 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
210903-11:20:49,716 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7".
210903-11:20:49,835 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks".
210903-11:20:49,835 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks".
210903-11:20:49,835 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks".
210903-11:20:49,835 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7".
210903-11:20:49,838 nipype.workflow INFO:
         [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
210903-11:20:49,838 nipype.workflow INFO:
         [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz210903-11:20:49,838 nipype.workflow INFO:
         [Node] Running "16_me_7" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2

210903-11:20:49,838 nipype.workflow INFO:
         [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
210903-11:20:49,936 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks".
210903-11:20:49,938 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks".
210903-11:20:49,939 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks".
210903-11:20:51,162 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7".
210903-11:20:51,840 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask".
210903-11:20:51,843 nipype.workflow INFO:
         [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
210903-11:20:51,844 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.dvars" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_confounds_wf/dvars".
210903-11:20:51,845 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask".
210903-11:20:51,847 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.tcompcor" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_confounds_wf/tcompcor".
210903-11:20:51,850 nipype.workflow INFO:
         [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
210903-11:20:51,938 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask".
210903-11:20:51,939 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask".
210903-11:20:52,37 nipype.workflow INFO:
         [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
210903-11:20:52,40 nipype.workflow INFO:
         [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor")
210903-11:20:52,599 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.tcompcor".
210903-11:20:53,901 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.dvars" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_confounds_wf/dvars".
210903-11:20:53,906 nipype.workflow INFO:
         [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
210903-11:20:53,906 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.tcompcor" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_confounds_wf/tcompcor".
210903-11:20:53,908 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask".
210903-11:20:53,912 nipype.workflow INFO:
         [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/final_boldref_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
210903-11:20:53,929 nipype.workflow INFO:
         [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor")
210903-11:20:54,62 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask".
210903-11:20:54,633 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.tcompcor".
210903-11:20:55,942 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.dvars" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_confounds_wf/dvars".
210903-11:20:55,943 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.tcompcor" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_confounds_wf/tcompcor".
210903-11:20:55,949 nipype.workflow INFO:
         [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
210903-11:20:55,963 nipype.workflow INFO:
         [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor")
210903-11:20:56,815 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.tcompcor".
210903-11:20:57,947 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7".
210903-11:20:57,960 nipype.workflow INFO:
         [Node] Running "17_comp_7" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz
210903-11:21:00,45 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7".
210903-11:21:00,619 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.dvars".
210903-11:21:02,253 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_confounds_wf/tcc_metadata_fmt".
210903-11:21:02,255 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_confounds_wf/tcc_metadata_fmt".
210903-11:21:02,259 nipype.workflow INFO:
         [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON")
210903-11:21:02,267 nipype.workflow INFO:
         [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON")
210903-11:21:02,321 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.tcc_metadata_fmt".
210903-11:21:02,322 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.tcc_metadata_fmt".
210903-11:21:03,47 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.dvars".
210903-11:21:04,263 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7".
210903-11:21:04,263 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_confounds_wf/tcc_metadata_fmt".
210903-11:21:04,266 nipype.workflow INFO:
         [Node] Running "18_md_7" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4
210903-11:21:04,278 nipype.workflow INFO:
         [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON")
210903-11:21:04,315 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.tcc_metadata_fmt".
210903-11:21:04,566 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.dvars".
210903-11:21:05,165 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7".
210903-11:21:06,175 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7".
210903-11:21:06,179 nipype.workflow INFO:
         [Node] Running "19_fill_7" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2
210903-11:21:11,113 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7".
210903-11:21:11,952 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2".
210903-11:21:11,956 nipype.workflow INFO:
         [Node] Running "20_add_7_2" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz
210903-11:21:14,8 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2".
210903-11:21:15,919 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2".
210903-11:21:15,922 nipype.workflow INFO:
         [Node] Running "21_md_7_2" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5
210903-11:21:16,709 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2".
210903-11:21:17,921 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2".
210903-11:21:17,924 nipype.workflow INFO:
         [Node] Running "22_me_7_2" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5
210903-11:21:19,195 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2".
210903-11:21:19,921 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask".
210903-11:21:19,924 nipype.workflow INFO:
         [Node] Running "23_depad_mask" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10
210903-11:21:20,307 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask".
210903-11:21:21,921 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform".
210903-11:21:21,942 nipype.workflow INFO:
         [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function")
210903-11:21:22,37 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform".
210903-11:21:25,929 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/apply_mask".
210903-11:21:25,932 nipype.workflow INFO:
         [Node] Setting-up "_apply_mask0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/apply_mask/mapflow/_apply_mask0".
210903-11:21:25,933 nipype.workflow INFO:
         [Node] Running "_apply_mask0" ("niworkflows.interfaces.nibabel.ApplyMask")
210903-11:21:26,63 nipype.workflow INFO:
         [Node] Finished "_apply_mask0".
210903-11:21:26,64 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.apply_mask".
210903-11:21:26,751 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_derivatives_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref".
210903-11:21:26,753 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/trunc_mov".
210903-11:21:26,756 nipype.workflow INFO:
         [Node] Running "trunc_mov" ("nipype.interfaces.ants.utils.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-R0120062_T1w_corrected_xform_maths.nii TruncateImageIntensity /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/sub-R0120062_T1w_corrected_xform.nii 0.01 0.999 256
210903-11:21:26,761 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
210903-11:21:27,268 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_derivatives_wf.gen_ref".
210903-11:21:27,306 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_norm_wf.trunc_mov".
210903-11:21:27,937 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern".
210903-11:21:27,961 nipype.workflow INFO:
         [Node] Running "skull_strip_extern" ("niworkflows.interfaces.freesurfer.FSInjectBrainExtracted")
210903-11:21:29,287 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern".
210903-11:21:29,937 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol".
210903-11:21:29,967 nipype.interface INFO:
         resume recon-all : recon-all -autorecon2-volonly -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-11:21:29,968 nipype.workflow INFO:
         [Node] Running "autorecon2_vol" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
recon-all -autorecon2-volonly -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-11:21:29,984 nipype.interface INFO:
         resume recon-all : recon-all -autorecon2-volonly -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-14:02:54,61 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol".
210903-14:02:58,32 nipype.workflow INFO:
         [Node] Setting-up "_autorecon_surfs0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0".
210903-14:02:58,99 nipype.interface INFO:
         resume recon-all : recon-all -autorecon-hemi lh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-14:02:58,100 nipype.workflow INFO:
         [Node] Running "_autorecon_surfs0" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
recon-all -autorecon-hemi lh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-14:02:58,133 nipype.interface INFO:
         resume recon-all : recon-all -autorecon-hemi lh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-15:25:52,347 nipype.workflow INFO:
         [Node] Finished "_autorecon_surfs0".
210903-15:25:53,667 nipype.workflow INFO:
         [Node] Setting-up "_autorecon_surfs1" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1".
210903-15:25:53,722 nipype.interface INFO:
         resume recon-all : recon-all -autorecon-hemi rh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-15:25:53,723 nipype.workflow INFO:
         [Node] Running "_autorecon_surfs1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
recon-all -autorecon-hemi rh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-15:25:53,757 nipype.interface INFO:
         resume recon-all : recon-all -autorecon-hemi rh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer
210903-16:53:14,604 nipype.workflow INFO:
         [Node] Finished "_autorecon_surfs1".
210903-16:53:16,690 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs".
210903-16:53:16,750 nipype.workflow INFO:
         [Node] Setting-up "_autorecon_surfs0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0".
210903-16:53:16,867 nipype.interface INFO:
         recon-all complete : Not running
210903-16:53:16,868 nipype.workflow INFO:
         [Node] Running "_autorecon_surfs0" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
echo recon-all: nothing to do
210903-16:53:16,959 nipype.interface INFO:
         recon-all complete : Not running
210903-16:53:18,161 nipype.workflow INFO:
         [Node] Finished "_autorecon_surfs0".
210903-16:53:18,166 nipype.workflow INFO:
         [Node] Setting-up "_autorecon_surfs1" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1".
210903-16:53:18,274 nipype.interface INFO:
         recon-all complete : Not running
210903-16:53:18,275 nipype.workflow INFO:
         [Node] Running "_autorecon_surfs1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
echo recon-all: nothing to do
210903-16:53:18,395 nipype.interface INFO:
         recon-all complete : Not running
210903-16:53:18,657 nipype.workflow INFO:
         [Node] Finished "_autorecon_surfs1".
210903-16:53:18,660 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs".
210903-16:53:20,650 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.cortribbon" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/cortribbon".
210903-16:53:20,700 nipype.interface INFO:
         resume recon-all : recon-all -parallel -subjid sub-R0120062 -sd /out/freesurfer -cortribbon
210903-16:53:20,701 nipype.workflow INFO:
         [Node] Running "cortribbon" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
recon-all -parallel -subjid sub-R0120062 -sd /out/freesurfer -cortribbon
210903-16:53:20,709 nipype.interface INFO:
         resume recon-all : recon-all -parallel -subjid sub-R0120062 -sd /out/freesurfer -cortribbon
210903-16:57:38,54 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.cortribbon".
210903-16:57:40,927 nipype.workflow INFO:
         [Node] Setting-up "_parcstats0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats0".
210903-16:57:41,39 nipype.interface INFO:
         resume recon-all : recon-all -autorecon-hemi lh -nohyporelabel -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvHK -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon
210903-16:57:41,40 nipype.workflow INFO:
         [Node] Running "_parcstats0" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
recon-all -autorecon-hemi lh -nohyporelabel -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvHK -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon
210903-16:57:41,161 nipype.interface INFO:
         resume recon-all : recon-all -autorecon-hemi lh -nohyporelabel -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvHK -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon
210903-17:05:56,800 nipype.workflow INFO:
         [Node] Finished "_parcstats0".
210903-17:05:57,456 nipype.workflow INFO:
         [Node] Setting-up "_parcstats1" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats1".
210903-17:05:57,580 nipype.interface INFO:
         resume recon-all : recon-all -autorecon-hemi rh -nohyporelabel -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvHK -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon
210903-17:05:57,583 nipype.workflow INFO:
         [Node] Running "_parcstats1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
recon-all -autorecon-hemi rh -nohyporelabel -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvHK -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon
210903-17:05:57,732 nipype.interface INFO:
         resume recon-all : recon-all -autorecon-hemi rh -nohyporelabel -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvHK -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon
210903-17:14:40,900 nipype.workflow INFO:
         [Node] Finished "_parcstats1".
210903-17:14:41,967 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.parcstats" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats".
210903-17:14:41,985 nipype.workflow INFO:
         [Node] Setting-up "_parcstats0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats0".
210903-17:14:42,117 nipype.interface INFO:
         recon-all complete : Not running
210903-17:14:42,117 nipype.workflow INFO:
         [Node] Running "_parcstats0" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
echo recon-all: nothing to do
210903-17:14:42,245 nipype.interface INFO:
         recon-all complete : Not running
210903-17:14:42,815 nipype.workflow INFO:
         [Node] Finished "_parcstats0".
210903-17:14:42,820 nipype.workflow INFO:
         [Node] Setting-up "_parcstats1" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats1".
210903-17:14:42,948 nipype.interface INFO:
         recon-all complete : Not running
210903-17:14:42,949 nipype.workflow INFO:
         [Node] Running "_parcstats1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
echo recon-all: nothing to do
210903-17:14:43,79 nipype.interface INFO:
         recon-all complete : Not running
210903-17:14:43,485 nipype.workflow INFO:
         [Node] Finished "_parcstats1".
210903-17:14:43,489 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.parcstats".
210903-17:14:43,950 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3".
210903-17:14:44,71 nipype.interface INFO:
         resume recon-all : recon-all -autorecon3 -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nobalabels
210903-17:14:44,72 nipype.workflow INFO:
         [Node] Running "autorecon3" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command:
recon-all -autorecon3 -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nobalabels
210903-17:14:44,226 nipype.interface INFO:
         resume recon-all : recon-all -autorecon3 -openmp 3 -subjid sub-R0120062 -sd /out/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nobalabels
210903-17:32:18,545 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3".
210903-17:32:19,46 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/fs_datasource".
210903-17:32:19,47 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/get_surfaces".
210903-17:32:19,47 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/fs_datasource".
210903-17:32:19,52 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_reports_wf.recon_report" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_reports_wf/recon_report".
210903-17:32:19,64 nipype.workflow INFO:
         [Node] Running "recon_report" ("smriprep.interfaces.reports.FSSurfaceReport")
210903-17:32:19,68 nipype.workflow INFO:
         [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource")
210903-17:32:19,71 nipype.workflow INFO:
         [Node] Running "get_surfaces" ("nipype.interfaces.io.FreeSurferSource")
210903-17:32:19,75 nipype.workflow INFO:
         [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource")
210903-17:32:19,256 nipype.workflow WARNING:
         Storing result file without outputs
210903-17:32:19,258 nipype.workflow WARNING:
         [Node] Error on "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_reports_wf.recon_report" (/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_reports_wf/recon_report)
210903-17:32:19,416 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource".
210903-17:32:19,451 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces".
210903-17:32:19,460 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource".
210903-17:32:20,977 nipype.workflow ERROR:
         Node recon_report failed to run on host 6f76b670b165.
210903-17:32:21,11 nipype.workflow ERROR:
         Saving crash info to /out/fmriprep/sub-R0120062/log/20210903-085644_3817570b-8093-4a42-b7b8-ffc1c2a2149b/crash-20210903-173220-root-recon_report-441e8c7d-89b3-4b52-ac7b-03ddab502ffe.txt
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
    result["result"] = node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 428, in run
    runtime = self._run_interface(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/smriprep/interfaces/reports.py", line 151, in _run_interface
    anat = load(_anat_file)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/loadsave.py", line 52, in load
    img = image_klass.from_filename(filename, **kwargs)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/dataobj_images.py", line 489, in from_filename
    keep_file_open=keep_file_open)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 575, in from_file_map
    header = klass.header_class.from_fileobj(mghf)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 170, in from_fileobj
    np.prod(hdr_str_to_np['dims']))
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/openers.py", line 168, in seek
    return self.fobj.seek(*args, **kwargs)
  File "indexed_gzip/indexed_gzip.pyx", line 635, in indexed_gzip.indexed_gzip._IndexedGzipFile.seek
indexed_gzip.indexed_gzip.CrcError: CRC/size validation failed - the GZIP data might be corrupt

210903-17:32:21,98 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_reg_wf/bbreg_wf/mri_coreg".
210903-17:32:21,109 nipype.workflow INFO:
         [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command:
mri_coreg --s sub-R0120062 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 3 --lta /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /out/freesurfer
210903-17:32:51,125 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.125601:
210903-17:32:51,126 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.125601:Matrix from LTA:
210903-17:32:51,126 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.125601: 0.99969  -0.00550   0.02427   0.55893;
210903-17:32:51,126 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.125601:-0.02387  -0.48717   0.87298   3.51001;
210903-17:32:51,126 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.125601: 0.00702  -0.87329  -0.48715   0.10665;
210903-17:32:51,126 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.125601: 0.00000   0.00000   0.00000   1.00000;
210903-17:32:51,310 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:
210903-17:32:51,310 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /out/freesurfer/sub-R0120062/mri/brainmask.mgz
210903-17:32:51,310 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:movvol /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz
210903-17:32:51,310 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:targvol /out/freesurfer/sub-R0120062/mri/brainmask.mgz
210903-17:32:51,310 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:outvol /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz
210903-17:32:51,310 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:regfile /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta
210903-17:32:51,310 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:invert 0
210903-17:32:51,310 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:tal    0
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:talres 2
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:regheader 0
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:noresample 0
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:interp  nearest (0)
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:precision  float (3)
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:Gdiag_no  -1
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:Synth      0
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:SynthSeed  1630907945
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:Final tkRAS-to-tkRAS Matrix is:
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466: 0.99969  -0.00550   0.02427   0.55890;
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:-0.02387  -0.48717   0.87298   3.51003;
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466: 0.00702  -0.87329  -0.48715   0.10664;
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466: 0.00000   0.00000   0.00000   1.00000;
210903-17:32:51,311 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:
210903-17:32:51,312 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:
210903-17:32:51,312 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466:Vox2Vox Matrix is:
210903-17:32:51,312 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466: 0.29082   0.00706   0.00160  -6.49596;
210903-17:32:51,312 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466: 0.00204  -0.14172   0.25405   17.32923;
210903-17:32:51,312 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466: 0.00543  -0.19840  -0.11072   55.67126;
210903-17:32:51,312 nipype.interface INFO:
         stdout 2021-09-03T17:32:51.310466: 0.00000   0.00000   0.00000   1.00000;
210903-17:32:52,413 nipype.interface INFO:
         stdout 2021-09-03T17:32:52.413780:
210903-17:32:52,414 nipype.interface INFO:
         stdout 2021-09-03T17:32:52.413780:Resampling
210903-17:32:52,414 nipype.interface INFO:
         stdout 2021-09-03T17:32:52.413780:Output registration matrix is identity
210903-17:32:52,414 nipype.interface INFO:
         stdout 2021-09-03T17:32:52.413780:
210903-17:32:52,414 nipype.interface INFO:
         stdout 2021-09-03T17:32:52.413780:mri_vol2vol done
210903-17:32:52,860 nipype.workflow WARNING:
         Storing result file without outputs
210903-17:32:52,861 nipype.workflow WARNING:
         [Node] Error on "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_reg_wf.bbreg_wf.mri_coreg" (/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_reg_wf/bbreg_wf/mri_coreg)
210903-17:32:53,2 nipype.workflow ERROR:
         Node mri_coreg failed to run on host 6f76b670b165.
210903-17:32:53,14 nipype.workflow ERROR:
         Saving crash info to /out/fmriprep/sub-R0120062/log/20210903-085644_3817570b-8093-4a42-b7b8-ffc1c2a2149b/crash-20210903-173253-root-mri_coreg-2be95269-2ee8-4329-99c7-5968390ef75a.txt
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
    result["result"] = node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 149, in run
    return super(FSCommand, self).run(**inputs)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 429, in run
    runtime = self._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/freesurfer.py", line 230, in _post_run_hook
    runtime = super(TruncateLTA, self)._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/registration.py", line 331, in _post_run_hook
    return super(MRICoregRPT, self)._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/mixins/reporting.py", line 50, in _post_run_hook
    self._generate_report()
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/report_base.py", line 47, in _generate_report
    contour_nii = load_img(self._contour) if self._contour is not None else None
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/image.py", line 1063, in load_img
    return check_niimg(img, wildcards=wildcards, dtype=dtype)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/_utils/niimg_conversions.py", line 263, in check_niimg
    niimg = load_niimg(niimg, dtype=dtype)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/_utils/niimg.py", line 121, in load_niimg
    niimg = nibabel.load(niimg)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/loadsave.py", line 52, in load
    img = image_klass.from_filename(filename, **kwargs)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/dataobj_images.py", line 489, in from_filename
    keep_file_open=keep_file_open)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 575, in from_file_map
    header = klass.header_class.from_fileobj(mghf)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 170, in from_fileobj
    np.prod(hdr_str_to_np['dims']))
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/openers.py", line 168, in seek
    return self.fobj.seek(*args, **kwargs)
  File "indexed_gzip/indexed_gzip.pyx", line 635, in indexed_gzip.indexed_gzip._IndexedGzipFile.seek
indexed_gzip.indexed_gzip.CrcError: CRC/size validation failed - the GZIP data might be corrupt

210903-17:32:53,118 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_reg_wf/bbreg_wf/mri_coreg".
210903-17:32:53,133 nipype.workflow INFO:
         [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command:
mri_coreg --s sub-R0120062 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 3 --lta /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /out/freesurfer
210903-17:33:26,190 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.190529:
210903-17:33:26,191 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.190529:Matrix from LTA:
210903-17:33:26,191 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.190529: 0.99974   0.02092   0.00924   0.71899;
210903-17:33:26,191 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.190529: 0.00283  -0.51402   0.85777   2.56635;
210903-17:33:26,191 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.190529: 0.02269  -0.85752  -0.51394  -1.22783;
210903-17:33:26,191 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.190529: 0.00000   0.00000   0.00000   1.00000;
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /out/freesurfer/sub-R0120062/mri/brainmask.mgz
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:movvol /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:targvol /out/freesurfer/sub-R0120062/mri/brainmask.mgz
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:outvol /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:regfile /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:invert 0
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:tal    0
210903-17:33:26,401 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:talres 2
210903-17:33:26,402 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:regheader 0
210903-17:33:26,402 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:noresample 0
210903-17:33:26,404 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:interp  nearest (0)
210903-17:33:26,404 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:precision  float (3)
210903-17:33:26,404 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:Gdiag_no  -1
210903-17:33:26,404 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:Synth      0
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:SynthSeed  1630990352
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:Final tkRAS-to-tkRAS Matrix is:
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361: 0.99974   0.02092   0.00924   0.71897;
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361: 0.00283  -0.51402   0.85777   2.56635;
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361: 0.02269  -0.85752  -0.51394  -1.22783;
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361: 0.00000   0.00000   0.00000   1.00000;
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:Vox2Vox Matrix is:
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361: 0.29083   0.00269  -0.00609  -5.00076;
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361: 0.00660  -0.14951   0.24946   18.71849;
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361:-0.00064  -0.19495  -0.11682   56.57230;
210903-17:33:26,405 nipype.interface INFO:
         stdout 2021-09-03T17:33:26.401361: 0.00000   0.00000   0.00000   1.00000;
210903-17:33:27,587 nipype.interface INFO:
         stdout 2021-09-03T17:33:27.587034:
210903-17:33:27,587 nipype.interface INFO:
         stdout 2021-09-03T17:33:27.587034:Resampling
210903-17:33:27,587 nipype.interface INFO:
         stdout 2021-09-03T17:33:27.587034:Output registration matrix is identity
210903-17:33:27,587 nipype.interface INFO:
         stdout 2021-09-03T17:33:27.587034:
210903-17:33:27,587 nipype.interface INFO:
         stdout 2021-09-03T17:33:27.587034:mri_vol2vol done
210903-17:33:28,117 nipype.workflow WARNING:
         Storing result file without outputs
210903-17:33:28,118 nipype.workflow WARNING:
         [Node] Error on "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_reg_wf.bbreg_wf.mri_coreg" (/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_reg_wf/bbreg_wf/mri_coreg)
210903-17:33:29,39 nipype.workflow ERROR:
         Node mri_coreg failed to run on host 6f76b670b165.
210903-17:33:29,51 nipype.workflow ERROR:
         Saving crash info to /out/fmriprep/sub-R0120062/log/20210903-085644_3817570b-8093-4a42-b7b8-ffc1c2a2149b/crash-20210903-173329-root-mri_coreg-ccaee96a-2e4a-4350-bcf7-afc6bbc78e1b.txt
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
    result["result"] = node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 149, in run
    return super(FSCommand, self).run(**inputs)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 429, in run
    runtime = self._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/freesurfer.py", line 230, in _post_run_hook
    runtime = super(TruncateLTA, self)._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/registration.py", line 331, in _post_run_hook
    return super(MRICoregRPT, self)._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/mixins/reporting.py", line 50, in _post_run_hook
    self._generate_report()
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/report_base.py", line 47, in _generate_report
    contour_nii = load_img(self._contour) if self._contour is not None else None
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/image.py", line 1063, in load_img
    return check_niimg(img, wildcards=wildcards, dtype=dtype)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/_utils/niimg_conversions.py", line 263, in check_niimg
    niimg = load_niimg(niimg, dtype=dtype)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/_utils/niimg.py", line 121, in load_niimg
    niimg = nibabel.load(niimg)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/loadsave.py", line 52, in load
    img = image_klass.from_filename(filename, **kwargs)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/dataobj_images.py", line 489, in from_filename
    keep_file_open=keep_file_open)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 575, in from_file_map
    header = klass.header_class.from_fileobj(mghf)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 170, in from_fileobj
    np.prod(hdr_str_to_np['dims']))
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/openers.py", line 168, in seek
    return self.fobj.seek(*args, **kwargs)
  File "indexed_gzip/indexed_gzip.pyx", line 635, in indexed_gzip.indexed_gzip._IndexedGzipFile.seek
indexed_gzip.indexed_gzip.CrcError: CRC/size validation failed - the GZIP data might be corrupt

210903-17:33:29,134 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg".
210903-17:33:29,153 nipype.workflow INFO:
         [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command:
mri_coreg --s sub-R0120062 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 3 --lta /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /out/freesurfer
210903-17:34:00,582 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.582744:
210903-17:34:00,583 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.582744:Matrix from LTA:
210903-17:34:00,583 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.582744: 0.99996  -0.00678   0.00644   0.67874;
210903-17:34:00,583 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.582744:-0.00911  -0.55226   0.83362   3.07176;
210903-17:34:00,583 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.582744:-0.00210  -0.83365  -0.55230  -2.08403;
210903-17:34:00,583 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.582744: 0.00000   0.00000   0.00000   1.00000;
210903-17:34:00,803 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:
210903-17:34:00,803 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /out/freesurfer/sub-R0120062/mri/brainmask.mgz
210903-17:34:00,804 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:movvol /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz
210903-17:34:00,804 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:targvol /out/freesurfer/sub-R0120062/mri/brainmask.mgz
210903-17:34:00,804 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:outvol /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz
210903-17:34:00,804 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:regfile /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta
210903-17:34:00,804 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:invert 0
210903-17:34:00,805 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:tal    0
210903-17:34:00,805 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:talres 2
210903-17:34:00,805 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:regheader 0
210903-17:34:00,805 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:noresample 0
210903-17:34:00,805 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:interp  nearest (0)
210903-17:34:00,805 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:precision  float (3)
210903-17:34:00,805 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:Gdiag_no  -1
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:Synth      0
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:SynthSeed  1631369183
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:Final tkRAS-to-tkRAS Matrix is:
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345: 0.99996  -0.00678   0.00644   0.67873;
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:-0.00911  -0.55226   0.83362   3.07175;
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:-0.00210  -0.83365  -0.55230  -2.08402;
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345: 0.00000   0.00000   0.00000   1.00000;
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:Vox2Vox Matrix is:
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345: 0.29090   0.00187   0.00197  -5.92420;
210903-17:34:00,806 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345:-0.00061  -0.16067   0.24251   22.20788;
210903-17:34:00,807 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345: 0.00207  -0.18946  -0.12551   56.74971;
210903-17:34:00,807 nipype.interface INFO:
         stdout 2021-09-03T17:34:00.803345: 0.00000   0.00000   0.00000   1.00000;
210903-17:34:01,858 nipype.interface INFO:
         stdout 2021-09-03T17:34:01.858197:
210903-17:34:01,858 nipype.interface INFO:
         stdout 2021-09-03T17:34:01.858197:Resampling
210903-17:34:01,858 nipype.interface INFO:
         stdout 2021-09-03T17:34:01.858197:Output registration matrix is identity
210903-17:34:01,858 nipype.interface INFO:
         stdout 2021-09-03T17:34:01.858197:
210903-17:34:01,858 nipype.interface INFO:
         stdout 2021-09-03T17:34:01.858197:mri_vol2vol done
210903-17:34:02,362 nipype.workflow WARNING:
         Storing result file without outputs
210903-17:34:02,362 nipype.workflow WARNING:
         [Node] Error on "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_reg_wf.bbreg_wf.mri_coreg" (/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg)
210903-17:34:03,74 nipype.workflow ERROR:
         Node mri_coreg failed to run on host 6f76b670b165.
210903-17:34:03,87 nipype.workflow ERROR:
         Saving crash info to /out/fmriprep/sub-R0120062/log/20210903-085644_3817570b-8093-4a42-b7b8-ffc1c2a2149b/crash-20210903-173403-root-mri_coreg-7013bd45-2bf9-4dd5-93c1-cd5da16edc7c.txt
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
    result["result"] = node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 149, in run
    return super(FSCommand, self).run(**inputs)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 429, in run
    runtime = self._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/freesurfer.py", line 230, in _post_run_hook
    runtime = super(TruncateLTA, self)._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/registration.py", line 331, in _post_run_hook
    return super(MRICoregRPT, self)._post_run_hook(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/mixins/reporting.py", line 50, in _post_run_hook
    self._generate_report()
  File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/report_base.py", line 47, in _generate_report
    contour_nii = load_img(self._contour) if self._contour is not None else None
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/image.py", line 1063, in load_img
    return check_niimg(img, wildcards=wildcards, dtype=dtype)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/_utils/niimg_conversions.py", line 263, in check_niimg
    niimg = load_niimg(niimg, dtype=dtype)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/_utils/niimg.py", line 121, in load_niimg
    niimg = nibabel.load(niimg)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/loadsave.py", line 52, in load
    img = image_klass.from_filename(filename, **kwargs)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/dataobj_images.py", line 489, in from_filename
    keep_file_open=keep_file_open)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 575, in from_file_map
    header = klass.header_class.from_fileobj(mghf)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 170, in from_fileobj
    np.prod(hdr_str_to_np['dims']))
  File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/openers.py", line 168, in seek
    return self.fobj.seek(*args, **kwargs)
  File "indexed_gzip/indexed_gzip.pyx", line 635, in indexed_gzip.indexed_gzip._IndexedGzipFile.seek
indexed_gzip.indexed_gzip.CrcError: CRC/size validation failed - the GZIP data might be corrupt

210903-17:34:03,167 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.resample" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/resample".
210903-17:34:03,169 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.resample" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/resample".
210903-17:34:03,177 nipype.workflow INFO:
         [Node] Setting-up "_midthickness0" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0".
210903-17:34:03,181 nipype.workflow INFO:
         [Node] Setting-up "_midthickness1" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1".
210903-17:34:03,217 nipype.workflow INFO:
         [Node] Running "_midthickness1" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command:
mris_expand -pial /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.pial -thickness -thickness_name /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.thickness /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.smoothwm 0.5 midthickness
210903-17:34:03,218 nipype.workflow INFO:
         [Node] Running "_midthickness0" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command:
mris_expand -pial /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.pial -thickness -thickness_name /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.thickness /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.smoothwm 0.5 midthickness
210903-17:34:03,219 nipype.workflow INFO:
         [Node] Running "resample" ("nipype.interfaces.freesurfer.preprocess.ApplyVolTransform"), a CommandLine Interface with command:
mri_vol2vol --lta /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --mov /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/resample/aparc+aseg.mgz --targ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/sub-R0120062_T1w_corrected_xform.nii --o seg.nii.gz
210903-17:34:03,227 nipype.workflow INFO:
         [Node] Running "resample" ("nipype.interfaces.freesurfer.preprocess.ApplyVolTransform"), a CommandLine Interface with command:
mri_vol2vol --lta /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --mov /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/resample/aseg.mgz --targ /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/sub-R0120062_T1w_corrected_xform.nii --o seg.nii.gz
210903-17:34:06,766 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.resample".
210903-17:34:07,300 nipype.interface WARNING:
         Changing /out/fmriprep/sub-R0120062/anat/sub-R0120062_desc-aparcaseg_dseg.nii.gz dtype from float32 to int16
210903-17:34:08,118 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.resample".
210903-17:34:09,171 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.refine" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/refine".
210903-17:34:09,176 nipype.workflow INFO:
         [Node] Running "refine" ("niworkflows.interfaces.freesurfer.RefineBrainMask")
210903-17:34:09,179 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.lut_t1w_dseg" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/lut_t1w_dseg".
210903-17:34:09,195 nipype.workflow INFO:
         [Node] Running "lut_t1w_dseg" ("nipype.interfaces.utility.wrappers.Function")
210903-17:34:09,887 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.lut_t1w_dseg".
210903-17:34:11,234 nipype.interface WARNING:
         Changing /out/fmriprep/sub-R0120062/anat/sub-R0120062_desc-aseg_dseg.nii.gz dtype from float32 to int16
210903-17:34:12,303 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.split_seg" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/split_seg".
210903-17:34:12,310 nipype.workflow INFO:
         [Node] Running "split_seg" ("nipype.interfaces.utility.wrappers.Function")
210903-17:34:12,503 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.split_seg".
210903-17:34:14,470 nipype.interface WARNING:
         Changing /out/fmriprep/sub-R0120062/anat/sub-R0120062_label-GM_probseg.nii.gz dtype from uint8 to float32
210903-17:34:15,937 nipype.interface WARNING:
         Changing /out/fmriprep/sub-R0120062/anat/sub-R0120062_label-WM_probseg.nii.gz dtype from uint8 to float32
210903-17:34:17,763 nipype.interface WARNING:
         Changing /out/fmriprep/sub-R0120062/anat/sub-R0120062_label-CSF_probseg.nii.gz dtype from uint8 to float32
210903-17:34:18,701 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.acc_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_confounds_wf/acc_masks".
210903-17:34:18,715 nipype.workflow INFO:
         [Node] Running "acc_masks" ("fmriprep.interfaces.confounds.aCompCorMasks")
210903-17:34:22,167 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_confounds_wf.acc_masks".
210903-17:34:22,771 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.acc_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_confounds_wf/acc_masks".
210903-17:34:22,783 nipype.workflow INFO:
         [Node] Running "acc_masks" ("fmriprep.interfaces.confounds.aCompCorMasks")
210903-17:34:26,179 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_confounds_wf.acc_masks".
210903-17:34:26,773 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.acc_masks" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_confounds_wf/acc_masks".
210903-17:34:26,784 nipype.workflow INFO:
         [Node] Running "acc_masks" ("fmriprep.interfaces.confounds.aCompCorMasks")
210903-17:34:30,328 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_confounds_wf.acc_masks".
210903-17:34:41,352 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.surface_recon_wf.refine".
210903-17:34:42,786 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.applyrefined" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/applyrefined".
210903-17:34:42,793 nipype.workflow INFO:
         [Node] Running "applyrefined" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/sub-R0120062_T1w_corrected_xform.nii -mas /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/refine/sub-R0120062_T1w_corrected_xform_rbrainmask.nii /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/applyrefined/sub-R0120062_T1w_corrected_xform_masked.nii.gz
210903-17:34:43,293 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.t1w_brain" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/t1w_brain".
210903-17:34:43,302 nipype.workflow INFO:
         [Node] Running "t1w_brain" ("niworkflows.interfaces.nibabel.ApplyMask")
210903-17:34:43,469 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.t1w_brain".
210903-17:34:43,707 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.applyrefined".
210903-17:34:44,819 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.t1w_brain" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/t1w_brain".
210903-17:34:44,831 nipype.workflow INFO:
         [Node] Running "t1w_brain" ("niworkflows.interfaces.nibabel.ApplyMask")
210903-17:34:44,832 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.t1w_brain" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/t1w_brain".
210903-17:34:44,838 nipype.workflow INFO:
         [Node] Running "t1w_brain" ("niworkflows.interfaces.nibabel.ApplyMask")
210903-17:34:45,39 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.t1w_brain".
210903-17:34:45,52 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.t1w_brain".
210903-17:34:46,776 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_reports_wf.seg_rpt" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/anat_reports_wf/seg_rpt".
210903-17:34:46,777 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_t1_trans_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_t1_trans_wf/gen_ref".
210903-17:34:46,783 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
210903-17:34:46,785 nipype.workflow INFO:
         [Node] Running "seg_rpt" ("niworkflows.interfaces.masks.ROIsPlot")
210903-17:34:47,256 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_t1_trans_wf.gen_ref".
210903-17:34:48,886 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_t1_trans_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_t1_trans_wf/gen_ref".
210903-17:34:48,904 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
210903-17:34:49,262 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_t1_trans_wf.gen_ref".
210903-17:34:50,800 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_t1_trans_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_t1_trans_wf/gen_ref".
210903-17:34:50,807 nipype.workflow INFO:
         [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference")
210903-17:34:51,98 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_t1_trans_wf.gen_ref".
210903-17:34:52,812 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_t1_trans_wf/aseg_t1w_tfm".
210903-17:34:52,822 nipype.workflow INFO:
         [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/resample/seg.nii.gz --interpolation MultiLabel --output seg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_t1_trans_wf/gen_ref/sub-R0120062_T1w_corrected_xform_masked_reference.nii --transform identity
210903-17:34:54,668 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.anat_preproc_wf.anat_reports_wf.seg_rpt".
210903-17:34:55,384 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_t1_trans_wf/aparc_t1w_tfm".
210903-17:34:55,399 nipype.workflow INFO:
         [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/resample/seg.nii.gz --interpolation MultiLabel --output seg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_1_wf/bold_t1_trans_wf/gen_ref/sub-R0120062_T1w_corrected_xform_masked_reference.nii --transform identity
210903-17:34:57,448 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_t1_trans_wf.aseg_t1w_tfm".
210903-17:34:58,939 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_t1_trans_wf/aseg_t1w_tfm".
210903-17:34:58,955 nipype.workflow INFO:
         [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/resample/seg.nii.gz --interpolation MultiLabel --output seg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_t1_trans_wf/gen_ref/sub-R0120062_T1w_corrected_xform_masked_reference.nii --transform identity
210903-17:34:59,835 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_1_wf.bold_t1_trans_wf.aparc_t1w_tfm".
210903-17:35:00,822 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_t1_trans_wf/aparc_t1w_tfm".
210903-17:35:00,832 nipype.workflow INFO:
         [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/resample/seg.nii.gz --interpolation MultiLabel --output seg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_2_wf/bold_t1_trans_wf/gen_ref/sub-R0120062_T1w_corrected_xform_masked_reference.nii --transform identity
210903-17:35:02,550 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_t1_trans_wf.aseg_t1w_tfm".
210903-17:35:02,821 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_t1_trans_wf/aseg_t1w_tfm".
210903-17:35:02,827 nipype.workflow INFO:
         [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/resample/seg.nii.gz --interpolation MultiLabel --output seg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_t1_trans_wf/gen_ref/sub-R0120062_T1w_corrected_xform_masked_reference.nii --transform identity
210903-17:35:04,409 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_2_wf.bold_t1_trans_wf.aparc_t1w_tfm".
210903-17:35:04,818 nipype.workflow INFO:
         [Node] Setting-up "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_t1_trans_wf/aparc_t1w_tfm".
210903-17:35:04,846 nipype.workflow INFO:
         [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /tmp/work/fmriprep_wf/single_subject_R0120062_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/resample/seg.nii.gz --interpolation MultiLabel --output seg_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_R0120062_wf/func_preproc_task_motor_run_3_wf/bold_t1_trans_wf/gen_ref/sub-R0120062_T1w_corrected_xform_masked_reference.nii --transform identity
210903-17:35:06,414 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_t1_trans_wf.aseg_t1w_tfm".
210903-17:35:08,583 nipype.workflow INFO:
         [Node] Finished "fmriprep_wf.single_subject_R0120062_wf.func_preproc_task_motor_run_3_wf.bold_t1_trans_wf.aparc_t1w_tfm".