Loading singularity... creating temp directory in /scratch/brainimage/kraft/rest/fmriprep_temp/sub-aam063 Starting fmriprep. subject: sub-aam063 INFO:  Convert SIF file to sandbox... 200822-13:57:03,176 cli INFO: Making sure the input data is BIDS compliant (warnings can be ignored in most cases). bids-validator@1.4.0 1: [WARN] The recommended file /README is missing. See Section 03 (Modality agnostic files) of the BIDS specification. (code: 101 - README_FILE_MISSING)  Please visit https://neurostars.org/search?q=README_FILE_MISSING for existing conversations about this issue. 2: [WARN] The Authors field of dataset_description.json should contain an array of fields - with one author per field. This was triggered based on the presence of only one author field. Please ignore if all contributors are already properly listed. (code: 102 - TOO_FEW_AUTHORS)  Please visit https://neurostars.org/search?q=TOO_FEW_AUTHORS for existing conversations about this issue. Summary: Available Tasks: Available Modalities: 12 Files, 217.94MB rest T1w 1 - Subject bold 1 - Session fieldmap  If you have any questions, please post on https://neurostars.org/tags/bids. 200822-13:57:28,347 nipype.workflow IMPORTANT: Running fMRIPREP version 20.1.1: * BIDS dataset path: /data. * Participant list: ['aam063']. * Run identifier: 20200822-135701_b4940dfa-5083-42a0-832e-1f05540e9b62. * Output spaces: T1w MNI152NLin2009cAsym:res-native fsnative fsaverage:den-164k. * Pre-run FreeSurfer's SUBJECTS_DIR: /output/freesurfer. 200822-13:57:32,99 nipype.workflow INFO: No single-band-reference found for sub-aam063_task-rest_bold.nii.gz. 200822-13:57:33,827 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will open access to more function 200822-13:57:33,844 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will open access to more function 200822-13:57:33,848 nipype.interface INFO: We advise you to upgrade DIPY version. This upgrade will open access to more models 200822-13:57:39,564 nipype.workflow INFO: fMRIPrep workflow graph with 425 nodes built successfully. 200822-13:57:56,29 nipype.workflow VERBOSE: fMRIPrep config: [environment] cpu_count = 80 exec_env = "singularity" free_mem = 182.1 overcommit_policy = "heuristic" overcommit_limit = "50%" nipype_version = "1.5.0" templateflow_version = "0.6.2" version = "20.1.1" [execution] bids_dir = "/data" bids_description_hash = "a7a2b23db6604519a0e5ec12d3ebcf22b5e7ccfc6014eda611f8dea713518223" boilerplate_only = false debug = false fs_license_file = "/lic/license.txt" fs_subjects_dir = "/output/freesurfer" layout = "BIDS Layout: .../data | Subjects: 1 | Sessions: 0 | Runs: 1" log_dir = "/output/fmriprep/logs" log_level = 15 low_mem = false md_only_boilerplate = false notrack = true output_dir = "/output" output_spaces = "T1w MNI152NLin2009cAsym:res-native fsnative fsaverage:den-164k" reports_only = false run_uuid = "20200822-135701_b4940dfa-5083-42a0-832e-1f05540e9b62" participant_label = [ "aam063",] templateflow_home = "/templateflow" work_dir = "/working_dir" write_graph = false [workflow] anat_only = false aroma_err_on_warn = false aroma_melodic_dim = -200 bold2t1w_dof = 6 bold2t1w_init = "register" cifti_output = false fmap_bspline = false force_syn = false hires = true ignore = [ "slicetiming",] longitudinal = false medial_surface_nan = false regressors_all_comps = false regressors_dvars_th = 1.5 regressors_fd_th = 0.5 run_reconall = true skull_strip_fixed_seed = false skull_strip_template = "OASIS30ANTs" skull_strip_t1w = "force" spaces = "T1w MNI152NLin2009cAsym:res-native fsnative fsaverage:den-164k" use_aroma = false use_syn_sdc = false [nipype] crashfile_format = "txt" get_linked_libs = false nprocs = 80 omp_nthreads = 8 plugin = "MultiProc" resource_monitor = true stop_on_first_crash = false [seeds] master = 30354 ants = 29299 [nipype.plugin_args] maxtasksperchild = 1 raise_insufficient = false 200822-13:57:56,29 nipype.workflow IMPORTANT: fMRIPrep started! 200822-13:58:00,657 nipype.workflow INFO: Workflow fmriprep_wf settings: ['check', 'execution', 'logging', 'monitoring'] 200822-13:58:00,921 nipype.workflow INFO: Running in parallel. 200822-13:58:00,942 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-13:58:01,35 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.func_derivatives_wf.spacesource" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource". 200822-13:58:01,64 nipype.workflow INFO: [Node] Running "spacesource" ("niworkflows.interfaces.space.SpaceDataSource") 200822-13:58:01,369 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.func_derivatives_wf.spacesource". 200822-13:58:01,370 nipype.workflow INFO: [Job 0] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.func_derivatives_wf.spacesource). 200822-13:58:01,466 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym.resnative/select_tpl". 200822-13:58:01,474 nipype.workflow INFO: [Node] Running "select_tpl" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:01,771 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl". 200822-13:58:01,771 nipype.workflow INFO: [Job 1] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.select_tpl). 200822-13:58:01,858 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.split_target" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym.resnative/split_target". 200822-13:58:01,863 nipype.workflow INFO: [Node] Running "split_target" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:02,159 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.split_target". 200822-13:58:02,159 nipype.workflow INFO: [Job 2] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.split_target). 200822-13:58:02,248 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.tf_select" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_reports_wf/_template_MNI152NLin2009cAsym/tf_select". 200822-13:58:02,287 nipype.workflow INFO: [Node] Running "tf_select" ("smriprep.interfaces.templateflow.TemplateFlowSelect") 200822-13:58:02,595 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.tf_select". 200822-13:58:02,595 nipype.workflow INFO: [Job 3] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.tf_select). 200822-13:58:02,680 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.split_desc" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/split_desc". 200822-13:58:02,685 nipype.workflow INFO: [Node] Running "split_desc" ("smriprep.interfaces.templateflow.TemplateDesc") 200822-13:58:02,982 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.split_desc". 200822-13:58:02,982 nipype.workflow INFO: [Job 4] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.split_desc). 200822-13:58:03,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.split" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/split". 200822-13:58:03,261 nipype.workflow INFO: [Node] Setting-up "_split0" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/split/mapflow/_split0". 200822-13:58:03,290 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:03,943 nipype.workflow INFO: [Node] Finished "_split0". 200822-13:58:03,954 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.split". 200822-13:58:03,954 nipype.workflow INFO: [Job 12] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.split). 200822-13:58:04,103 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.about" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/about". 200822-13:58:04,128 nipype.workflow INFO: [Node] Running "about" ("fmriprep.interfaces.reports.AboutSummary") 200822-13:58:04,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.about". 200822-13:58:04,526 nipype.workflow INFO: [Job 101] Completed (fmriprep_wf.single_subject_aam063_wf.about). 200822-13:58:04,642 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.fsdir_run_20200822_135701_b4940dfa_5083_42a0_832e_1f05540e9b62" in "/working_dir/fmriprep_wf/fsdir_run_20200822_135701_b4940dfa_5083_42a0_832e_1f05540e9b62". 200822-13:58:04,653 nipype.workflow INFO: [Node] Running "fsdir_run_20200822_135701_b4940dfa_5083_42a0_832e_1f05540e9b62" ("niworkflows.interfaces.bids.BIDSFreeSurferDir") 200822-13:58:04,971 nipype.workflow INFO: [Node] Finished "fmriprep_wf.fsdir_run_20200822_135701_b4940dfa_5083_42a0_832e_1f05540e9b62". 200822-13:58:04,971 nipype.workflow INFO: [Job 162] Completed (fmriprep_wf.fsdir_run_20200822_135701_b4940dfa_5083_42a0_832e_1f05540e9b62). 200822-13:58:05,98 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 167.83/168.84, Free processors: 74/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.bidssrc * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources 200822-13:58:05,204 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.tf_select" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tf_select". 200822-13:58:05,211 nipype.workflow INFO: [Node] Running "tf_select" ("smriprep.interfaces.templateflow.TemplateFlowSelect") 200822-13:58:05,607 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.tf_select". 200822-13:58:05,607 nipype.workflow INFO: [Job 5] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.tf_select). 200822-13:58:05,725 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.phmap2rads" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/phmap2rads". 200822-13:58:05,742 nipype.workflow INFO: [Node] Setting-up "_phmap2rads0" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/phmap2rads/mapflow/_phmap2rads0". 200822-13:58:05,750 nipype.workflow INFO: [Node] Running "_phmap2rads0" ("sdcflows.interfaces.fmap.PhaseMap2rads") 200822-13:58:06,190 nipype.workflow INFO: [Node] Finished "_phmap2rads0". 200822-13:58:06,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.phmap2rads". 200822-13:58:06,193 nipype.workflow INFO: [Job 13] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.phmap2rads). 200822-13:58:07,115 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 1 jobs ready. Free memory (GB): 167.83/168.84, Free processors: 74/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.bidssrc * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources 200822-13:58:07,309 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.calc_phdiff" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/calc_phdiff". 200822-13:58:07,337 nipype.workflow INFO: [Node] Running "calc_phdiff" ("sdcflows.interfaces.fmap.SubtractPhases") 200822-13:58:07,759 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.calc_phdiff". 200822-13:58:07,760 nipype.workflow INFO: [Job 14] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.calc_phdiff). 200822-13:58:08,450 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/func_derivatives_wf/raw_sources". 200822-13:58:08,466 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:08,489 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources". 200822-13:58:09,93 nipype.workflow INFO: [Job 6] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.func_derivatives_wf.raw_sources). 200822-13:58:09,98 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 168.03/168.84, Free processors: 75/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.bidssrc * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg 200822-13:58:11,346 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg". 200822-13:58:11,354 nipype.workflow INFO: [Node] Running "magmrg" ("niworkflows.interfaces.images.IntraModalMerge") 200822-13:58:11,371 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.validate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/validate". 200822-13:58:11,378 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200822-13:58:11,432 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.validate". 200822-13:58:11,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg". 200822-13:58:11,604 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl". 200822-13:58:11,610 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl". 200822-13:58:11,613 nipype.workflow INFO: [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1 200822-13:58:11,617 nipype.workflow INFO: [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1 200822-13:58:11,826 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.bidssrc" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/bidssrc". 200822-13:58:11,841 nipype.workflow INFO: [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber") 200822-13:58:11,847 nipype.interface INFO: No "t2w" images found for sub-aam063 200822-13:58:11,847 nipype.interface INFO: No "flair" images found for sub-aam063 200822-13:58:11,847 nipype.interface INFO: No "sbref" images found for sub-aam063 200822-13:58:11,847 nipype.interface INFO: No "roi" images found for sub-aam063 200822-13:58:11,858 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.bidssrc". 200822-13:58:13,96 nipype.workflow INFO: [Job 7] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.magmrg). 200822-13:58:13,99 nipype.workflow INFO: [Job 24] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.validate). 200822-13:58:13,102 nipype.workflow INFO: [Job 102] Completed (fmriprep_wf.single_subject_aam063_wf.bidssrc). 200822-13:58:13,108 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 168.44/168.84, Free processors: 78/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl 200822-13:58:13,215 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.ds_report_validation" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/ds_report_validation". 200822-13:58:13,234 nipype.workflow INFO: [Node] Running "ds_report_validation" ("fmriprep.interfaces.DerivativesDataSink") 200822-13:58:13,397 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct". 200822-13:58:13,441 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_split". 200822-13:58:13,543 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.ds_report_validation". 200822-13:58:13,543 nipype.workflow INFO: [Job 27] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.ds_report_validation). 200822-13:58:13,666 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.ds_report_about" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/ds_report_about". 200822-13:58:13,680 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl". 200822-13:58:13,684 nipype.workflow INFO: [Node] Running "ds_report_about" ("fmriprep.interfaces.DerivativesDataSink") 200822-13:58:14,107 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.ds_report_about". 200822-13:58:14,107 nipype.workflow INFO: [Job 160] Completed (fmriprep_wf.single_subject_aam063_wf.ds_report_about). 200822-13:58:15,99 nipype.workflow INFO: [Job 100] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl). 200822-13:58:15,106 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 0 jobs ready. Free memory (GB): 166.47/168.84, Free processors: 67/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.bids_info * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl 200822-13:58:15,581 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /data/sub-aam063/func/sub-aam063_task-rest_bold.nii.gz -t 200822-13:58:15,619 nipype.workflow INFO: [Node] Running "n4_correct" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection -d 3 --input-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/magmrg/sub-aam063_run-04_magnitude1_avg.nii.gz --output sub-aam063_run-04_magnitude1_avg_corrected.nii.gz 200822-13:58:15,958 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref". 200822-13:58:15,982 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200822-13:58:15,990 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_template_wf/t1w_ref_dimensions". 200822-13:58:16,158 nipype.workflow INFO: [Node] Running "t1w_ref_dimensions" ("niworkflows.interfaces.images.TemplateDimensions") 200822-13:58:16,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions". 200822-13:58:16,600 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.bids_info" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/bids_info". 200822-13:58:16,608 nipype.workflow INFO: [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo") 200822-13:58:16,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.bids_info". 200822-13:58:17,102 nipype.workflow INFO: [Job 103] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions). 200822-13:58:17,105 nipype.workflow INFO: [Job 161] Completed (fmriprep_wf.single_subject_aam063_wf.bids_info). 200822-13:58:17,111 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 5 jobs ready. Free memory (GB): 166.87/168.84, Free processors: 69/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl 200822-13:58:17,216 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.t1w_name" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_derivatives_wf/t1w_name". 200822-13:58:17,220 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources". 200822-13:58:17,226 nipype.workflow INFO: [Node] Running "t1w_name" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:17,551 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.t1w_name". 200822-13:58:17,551 nipype.workflow INFO: [Job 105] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.t1w_name). 200822-13:58:17,662 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.t1w_conform_check" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_reports_wf/t1w_conform_check". 200822-13:58:17,672 nipype.workflow INFO: [Node] Running "t1w_conform_check" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:17,989 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.t1w_conform_check". 200822-13:58:17,989 nipype.workflow INFO: [Job 106] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.t1w_conform_check). 200822-13:58:18,98 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.summary" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/summary". 200822-13:58:18,110 nipype.workflow INFO: [Node] Running "summary" ("fmriprep.interfaces.reports.SubjectSummary") 200822-13:58:18,471 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.summary". 200822-13:58:18,471 nipype.workflow INFO: [Job 350] Completed (fmriprep_wf.single_subject_aam063_wf.summary). 200822-13:58:18,990 nipype.interface INFO: stderr 2020-08-22T13:58:18.990357:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200822-13:58:18,991 nipype.interface INFO: stderr 2020-08-22T13:58:18.990357:++ Authored by: RW Cox 200822-13:58:19,18 nipype.interface INFO: stderr 2020-08-22T13:58:19.018843:++ Coarse del was 10, replaced with 4 200822-13:58:19,106 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 2 jobs ready. Free memory (GB): 166.47/168.84, Free processors: 67/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.t1w_conform * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl 200822-13:58:19,220 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.ds_t1w_conform_report" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_reports_wf/ds_t1w_conform_report". 200822-13:58:19,256 nipype.workflow INFO: [Node] Running "ds_t1w_conform_report" ("smriprep.interfaces.DerivativesDataSink") 200822-13:58:19,559 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.ds_t1w_conform_report". 200822-13:58:19,559 nipype.workflow INFO: [Job 107] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_reports_wf.ds_t1w_conform_report). 200822-13:58:19,592 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct". 200822-13:58:19,679 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.ds_report_summary" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/ds_report_summary". 200822-13:58:19,697 nipype.workflow INFO: [Node] Running "ds_report_summary" ("fmriprep.interfaces.DerivativesDataSink") 200822-13:58:20,17 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.ds_report_summary". 200822-13:58:20,17 nipype.workflow INFO: [Job 351] Completed (fmriprep_wf.single_subject_aam063_wf.ds_report_summary). 200822-13:58:20,158 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:20,165 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources". 200822-13:58:20,573 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.t1w_conform" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_template_wf/t1w_conform". 200822-13:58:20,581 nipype.workflow INFO: [Node] Setting-up "_t1w_conform0" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_template_wf/t1w_conform/mapflow/_t1w_conform0". 200822-13:58:20,586 nipype.workflow INFO: [Node] Running "_t1w_conform0" ("niworkflows.interfaces.images.Conform") 200822-13:58:20,697 nipype.workflow INFO: [Node] Finished "_t1w_conform0". 200822-13:58:20,701 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.t1w_conform". 200822-13:58:21,102 nipype.workflow INFO: [Job 8] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.n4_correct). 200822-13:58:21,105 nipype.workflow INFO: [Job 104] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources). 200822-13:58:21,107 nipype.workflow INFO: [Job 108] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.t1w_conform). 200822-13:58:21,113 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 167.07/168.84, Free processors: 77/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl 200822-13:58:21,219 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.get1st" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_template_wf/get1st". 200822-13:58:21,978 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl". 200822-13:58:23,105 nipype.workflow INFO: [Job 98] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl). 200822-13:58:23,111 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 166.87/168.84, Free processors: 76/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.get1st * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:23,223 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl". 200822-13:58:23,232 nipype.workflow INFO: [Node] Running "get1st" ("nipype.interfaces.utility.base.Select") 200822-13:58:23,238 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.get1st". 200822-13:58:23,258 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet". 200822-13:58:23,276 nipype.workflow INFO: [Node] Running "bet" ("niworkflows.interfaces.masks.BETRPT"), a CommandLine Interface with command: bet /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/n4_correct/sub-aam063_run-04_magnitude1_avg_corrected.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain.nii.gz -f 0.60 -m 200822-13:58:25,107 nipype.workflow INFO: [Job 109] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_template_wf.get1st). 200822-13:58:25,114 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 166.87/168.84, Free processors: 76/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:25,220 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_validate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_validate". 200822-13:58:25,226 nipype.workflow INFO: [Node] Running "anat_validate" ("niworkflows.interfaces.images.ValidateImage") 200822-13:58:25,269 nipype.workflow INFO: [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge") 200822-13:58:25,276 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl". 200822-13:58:25,548 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_validate". 200822-13:58:25,548 nipype.workflow INFO: [Job 110] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_validate). 200822-13:58:27,109 nipype.workflow INFO: [Job 99] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl). 200822-13:58:27,115 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 167.07/168.84, Free processors: 77/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:27,219 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/fov_check". 200822-13:58:28,745 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet". 200822-13:58:29,107 nipype.workflow INFO: [Job 9] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.magnitude_wf.bet). 200822-13:58:29,109 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 166.67/168.84, Free processors: 75/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.truncate_images * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.recon_config * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fov_check * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:29,399 nipype.workflow INFO: [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:29,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/truncate_images". 200822-13:58:29,409 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode". 200822-13:58:29,412 nipype.workflow INFO: [Node] Setting-up "_truncate_images0" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0". 200822-13:58:29,418 nipype.workflow INFO: [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_maths.nii TruncateImageIntensity /data/sub-aam063/anat/sub-aam063_T1w.nii 0.01 0.999 256 200822-13:58:29,422 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.prelude" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/prelude". 200822-13:58:29,771 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/recon_config". 200822-13:58:30,147 nipype.workflow INFO: [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs") 200822-13:58:30,156 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.recon_config". 200822-13:58:30,940 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fov_check". 200822-13:58:31,109 nipype.workflow INFO: [Job 111] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fov_check). 200822-13:58:31,110 nipype.workflow INFO: [Job 112] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.recon_config). 200822-13:58:31,112 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 166.67/168.84, Free processors: 75/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.prelude * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.truncate_images * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:31,351 nipype.workflow INFO: [Node] Running "MskErode" ("nipype.interfaces.fsl.maths.MathsCommand"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask.nii.gz -nan -kernel 2D -ero /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask_maths.nii.gz 200822-13:58:31,459 nipype.workflow INFO: [Node] Running "prelude" ("nipype.interfaces.fsl.preprocess.PRELUDE"), a CommandLine Interface with command: prelude --abs=/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain.nii.gz --mask=/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask.nii.gz --phase=/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/phmap2rads/mapflow/_phmap2rads0/sub-aam063_run-04_phasediff_rads.nii.gz --unwrap=/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/prelude/sub-aam063_run-04_phasediff_rads_unwrapped.nii.gz 200822-13:58:31,557 nipype.workflow INFO: [Node] Finished "_truncate_images0". 200822-13:58:31,561 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.truncate_images". 200822-13:58:31,723 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode". 200822-13:58:31,828 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.prelude". 200822-13:58:33,114 nipype.workflow INFO: [Job 113] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.truncate_images). 200822-13:58:33,117 nipype.workflow INFO: [Job 10] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.MskErode). 200822-13:58:33,119 nipype.workflow INFO: [Job 15] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.prelude). 200822-13:58:33,124 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 162.27/168.84, Free processors: 70/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:33,228 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.recenter" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/recenter". 200822-13:58:33,236 nipype.workflow INFO: [Node] Running "recenter" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:33,324 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/autorecon1". 200822-13:58:33,405 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask". 200822-13:58:33,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.recenter". 200822-13:58:33,562 nipype.workflow INFO: [Job 16] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.recenter). 200822-13:58:33,755 nipype.workflow INFO: [Node] Running "autorecon1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: recon-all -autorecon1 -i /data/sub-aam063/anat/sub-aam063_T1w.nii -noskullstrip -openmp 8 -subjid sub-aam063 -sd /output/freesurfer 200822-13:58:33,846 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4". 200822-13:58:33,855 nipype.workflow INFO: [Node] Setting-up "_inu_n40" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40". 200822-13:58:33,861 nipype.workflow INFO: [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-aam063_T1w_maths.nii --convergence [ 50x50x50x50, 1e-07 ] --output sub-aam063_T1w_maths_corrected.nii --shrink-factor 4 200822-13:58:35,120 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 161.87/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:35,736 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise". 200822-13:58:35,747 nipype.workflow INFO: [Node] Running "denoise" ("nipype.interfaces.fsl.maths.SpatialFilter"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/recenter/sub-aam063_run-04_phasediff_rads_unwrapped_recentered.nii.gz -kernel sphere 5.0000 -fmedian /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/denoise/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt.nii.gz 200822-13:58:36,158 nipype.workflow INFO: [Node] Running "NewMask" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask.nii.gz -sub /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask_maths.nii.gz -thr 0.5 -bin /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask_maths.nii.gz 200822-13:58:36,398 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask". 200822-13:58:36,449 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise". 200822-13:58:37,118 nipype.workflow INFO: [Job 11] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.NewMask). 200822-13:58:37,121 nipype.workflow INFO: [Job 17] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.denoise). 200822-13:58:37,127 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 162.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:37,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean". 200822-13:58:37,425 nipype.workflow INFO: [Node] Running "demean" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:38,426 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean". 200822-13:58:39,120 nipype.workflow INFO: [Job 18] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.demean). 200822-13:58:39,127 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 162.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:39,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike". 200822-13:58:41,128 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 161.87/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:41,632 nipype.workflow INFO: [Node] Running "Despike" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command: fugue --despike --despikethreshold=2.1 --loadfmap=/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz --savefmap=sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz --mask=/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask.nii.gz 200822-13:58:42,67 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike". 200822-13:58:43,124 nipype.workflow INFO: [Job 19] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Despike). 200822-13:58:43,129 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 162.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:43,430 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask". 200822-13:58:43,440 nipype.workflow INFO: [Node] Running "ApplyMask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Despike/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap.nii.gz -nan -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/NewMask/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask_maths.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz 200822-13:58:43,604 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask". 200822-13:58:44,262 nipype.interface INFO: stderr 2020-08-22T13:58:44.262023:++ Max displacement in automask = 0.21 (mm) at sub-brick 8 200822-13:58:44,262 nipype.interface INFO: stderr 2020-08-22T13:58:44.262023:++ Max delta displ in automask = 0.16 (mm) at sub-brick 18 200822-13:58:45,127 nipype.workflow INFO: [Job 20] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.ApplyMask). 200822-13:58:45,134 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 162.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:45,242 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/Merge". 200822-13:58:45,471 nipype.workflow INFO: [Node] Running "Merge" ("nipype.interfaces.utility.base.Merge") 200822-13:58:45,478 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge". 200822-13:58:45,754 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref". 200822-13:58:47,131 nipype.workflow INFO: [Job 28] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.gen_ref). 200822-13:58:47,133 nipype.workflow INFO: [Job 21] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.Merge). 200822-13:58:47,140 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 4 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:47,244 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/calc_dummy_scans". 200822-13:58:47,252 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 200822-13:58:47,445 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_hmc_wf/mcflirt". 200822-13:58:47,494 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge". 200822-13:58:47,504 nipype.workflow INFO: [Node] Running "AddEdge" ("nipype.interfaces.fsl.maths.MultiImageMaths"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/demean/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean.nii.gz -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/MskErode/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask_maths.nii.gz -add /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/ApplyMask/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_fieldmap_masked.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/fmap_postproc_wf/cleanup_wf/AddEdge/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_maths.nii.gz 200822-13:58:47,611 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans". 200822-13:58:47,611 nipype.workflow INFO: [Job 97] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.calc_dummy_scans). 200822-13:58:47,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge". 200822-13:58:49,131 nipype.workflow INFO: [Job 22] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.fmap_postproc_wf.cleanup_wf.AddEdge). 200822-13:58:49,135 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 162.31/168.84, Free processors: 54/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:49,386 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.compfmap" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/compfmap". 200822-13:58:49,421 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /data/sub-aam063/func/sub-aam063_task-rest_bold.nii.gz -out /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_hmc_wf/mcflirt/sub-aam063_task-rest_bold_mcf.nii.gz -reffile /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots -rmsabs -rmsrel 200822-13:58:49,446 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 200822-13:58:49,489 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 200822-13:58:49,546 nipype.workflow INFO: [Node] Running "compfmap" ("sdcflows.interfaces.fmap.Phasediff2Fieldmap") 200822-13:58:49,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.compfmap". 200822-13:58:51,132 nipype.workflow INFO: [Job 23] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.phdiff_wf.compfmap). 200822-13:58:51,135 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 162.31/168.84, Free processors: 54/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:55,842 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 200822-13:58:57,141 nipype.workflow INFO: [Job 35] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff). 200822-13:58:57,147 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 162.51/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:59,148 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 162.31/168.84, Free processors: 54/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split 200822-13:58:59,477 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split". 200822-13:58:59,530 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 200822-13:58:59,558 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 200822-13:59:01,145 nipype.workflow INFO: [Job 25] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_split). 200822-13:59:01,152 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 162.87/168.84, Free processors: 55/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:02,778 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 200822-13:59:03,148 nipype.workflow INFO: [Job 36] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm). 200822-13:59:03,155 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 162.77/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:03,612 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym.resnative/gen_ref". 200822-13:59:03,831 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200822-13:59:04,122 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref". 200822-13:59:05,150 nipype.workflow INFO: [Job 26] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_std_trans_wf.gen_ref). 200822-13:59:05,156 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 162.87/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:05,332 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 200822-13:59:05,342 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 0 --input /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 200822-13:59:09,482 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 200822-13:59:11,156 nipype.workflow INFO: [Job 37] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask). 200822-13:59:11,163 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:11,469 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200822-13:59:13,164 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 162.87/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:13,581 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 200822-13:59:14,15 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200822-13:59:15,158 nipype.workflow INFO: [Job 38] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 200822-13:59:15,161 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:15,266 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr". 200822-13:59:15,279 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 200822-13:59:15,697 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 200822-13:59:15,698 nipype.workflow INFO: [Job 39] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 200822-13:59:17,166 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:19,170 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 162.87/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:19,562 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200822-13:59:19,715 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200822-13:59:24,20 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200822-13:59:25,170 nipype.workflow INFO: [Job 40] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 200822-13:59:25,177 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:25,290 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.get_ees" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/get_ees". 200822-13:59:25,495 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200822-13:59:27,177 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 162.67/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.get_ees * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:27,507 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200822-13:59:28,29 nipype.workflow INFO: [Node] Running "get_ees" ("nipype.interfaces.utility.wrappers.Function") 200822-13:59:28,58 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.get_ees". 200822-13:59:29,174 nipype.workflow INFO: [Job 41] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.get_ees). 200822-13:59:29,181 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 162.87/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:29,366 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200822-13:59:31,177 nipype.workflow INFO: [Job 42] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 200822-13:59:31,183 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:31,525 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200822-13:59:31,534 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200822-13:59:32,265 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200822-13:59:33,180 nipype.workflow INFO: [Job 43] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 200822-13:59:33,187 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:33,570 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200822-13:59:33,582 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200822-13:59:33,745 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200822-13:59:35,183 nipype.workflow INFO: [Job 44] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 200822-13:59:35,190 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:35,391 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200822-13:59:35,554 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200822-13:59:37,186 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 162.87/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:37,487 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200822-13:59:39,185 nipype.workflow INFO: [Job 45] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 200822-13:59:39,191 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:41,192 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 162.97/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:41,223 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200822-13:59:41,232 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200822-13:59:41,396 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200822-13:59:43,191 nipype.workflow INFO: [Job 46] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 200822-13:59:43,197 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:43,401 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200822-13:59:44,557 nipype.workflow INFO: [Node] Finished "_inu_n40". 200822-13:59:44,561 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4". 200822-13:59:45,192 nipype.workflow INFO: [Job 114] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4). 200822-13:59:45,199 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 70/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:45,532 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200822-13:59:46,275 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200822-13:59:47,195 nipype.workflow INFO: [Job 47] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 200822-13:59:47,201 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 162.87/168.84, Free processors: 69/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_target * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:47,741 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/lap_target". 200822-13:59:47,749 nipype.workflow INFO: [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_maths_corrected_maths.nii Laplacian /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-aam063_T1w_maths_corrected.nii 1.5 1 200822-13:59:47,837 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/res_target". 200822-13:59:47,852 nipype.workflow INFO: [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-aam063_T1w_maths_corrected.nii sub-aam063_T1w_maths_corrected_resampled.nii 4 4 4 1 200822-13:59:49,202 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 162.77/168.84, Free processors: 68/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_target * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:50,535 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200822-13:59:50,545 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200822-13:59:50,678 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200822-13:59:50,686 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_target". 200822-13:59:51,201 nipype.workflow INFO: [Job 117] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.res_target). 200822-13:59:51,203 nipype.workflow INFO: [Job 48] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 200822-13:59:51,209 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 70/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:51,573 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200822-13:59:53,202 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 162.67/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.init_aff * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_target * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:53,468 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/init_aff". 200822-13:59:53,486 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz,/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-aam063_T1w_maths_corrected_resampled.nii,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1 200822-13:59:53,559 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200822-13:59:53,754 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200822-13:59:53,898 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_target". 200822-13:59:55,205 nipype.workflow INFO: [Job 115] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.lap_target). 200822-13:59:55,206 nipype.workflow INFO: [Job 49] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 200822-13:59:55,209 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 163.07/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.init_aff * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:55,352 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/mrg_target". 200822-13:59:55,559 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200822-13:59:56,822 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.init_aff". 200822-13:59:57,208 nipype.workflow INFO: [Job 118] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.init_aff). 200822-13:59:57,214 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 162.87/168.84, Free processors: 69/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.mrg_target * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-13:59:57,381 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200822-13:59:57,487 nipype.workflow INFO: [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge") 200822-13:59:57,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.mrg_target". 200822-13:59:57,588 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200822-13:59:59,212 nipype.workflow INFO: [Job 50] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 200822-13:59:59,215 nipype.workflow INFO: [Job 116] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.mrg_target). 200822-13:59:59,221 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 163.27/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:01,219 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 55/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap2ref_reg * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:01,469 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/norm". 200822-14:00:01,481 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap2ref_reg" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/fmap2ref_reg". 200822-14:00:01,497 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("niworkflows.interfaces.registration.ANTSRegistrationRPT"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz, transform_InverseWarped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Affine[ 0.01 ] --metric Mattes[ /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 200822-14:00:01,501 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-aam063_T1w_maths_corrected.nii, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform Affine[ 0.1 ] --metric MI[ /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-aam063_T1w_maths_corrected.nii, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-aam063_T1w_maths_corrected.nii, 0.5, 4, None, 1 ] --metric CC[ /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-aam063_T1w_maths_corrected_maths.nii, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0 200822-14:00:25,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap2ref_reg". 200822-14:00:27,260 nipype.workflow INFO: [Job 51] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap2ref_reg). 200822-14:00:27,265 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:29,267 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 159.87/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap2ref_apply * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_mask2ref_apply * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:29,681 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap2ref_apply" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/fmap2ref_apply". 200822-14:00:29,688 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_mask2ref_apply" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/fmap_mask2ref_apply". 200822-14:00:29,713 nipype.workflow INFO: [Node] Running "fmap2ref_apply" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/compfmap/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_maths_fmap.nii.gz --interpolation BSpline --output sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_maths_fmap_trans.nii.gz --reference-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/fmap2ref_reg/transformComposite.h5 200822-14:00:29,716 nipype.workflow INFO: [Node] Running "fmap_mask2ref_apply" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/phdiff_wf/magnitude_wf/bet/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask.nii.gz --interpolation MultiLabel --output sub-aam063_run-04_magnitude1_avg_corrected_brain_mask_trans.nii.gz --reference-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/fmap2ref_reg/transformComposite.h5 200822-14:00:30,824 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap2ref_apply". 200822-14:00:31,263 nipype.workflow INFO: [Job 53] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap2ref_apply). 200822-14:00:31,269 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_mask2ref_apply * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:31,525 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.torads" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/torads". 200822-14:00:33,268 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 159.87/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.torads * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_mask2ref_apply * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:33,321 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_mask2ref_apply". 200822-14:00:33,622 nipype.workflow INFO: [Node] Running "torads" ("sdcflows.interfaces.fmap.FieldToRadS") 200822-14:00:33,779 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.torads". 200822-14:00:35,268 nipype.workflow INFO: [Job 52] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_mask2ref_apply). 200822-14:00:35,271 nipype.workflow INFO: [Job 54] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.torads). 200822-14:00:35,277 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:35,620 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.gen_vsm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/gen_vsm". 200822-14:00:37,275 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.gen_vsm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:37,800 nipype.workflow INFO: [Node] Running "gen_vsm" ("nipype.interfaces.fsl.preprocess.FUGUE"), a CommandLine Interface with command: fugue --dwell=0.0005100000 --loadfmap=/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/torads/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_maths_fmap_trans_rad.nii.gz --mask=/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/fmap_mask2ref_apply/sub-aam063_run-04_magnitude1_avg_corrected_brain_mask_trans.nii.gz --unmaskshift --saveshift=sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_maths_fmap_trans_rad_vsm_unmasked.nii.gz --unwarpdir=y- 200822-14:00:38,216 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.gen_vsm". 200822-14:00:39,274 nipype.workflow INFO: [Job 55] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.gen_vsm). 200822-14:00:39,281 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:39,528 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.vsm2dfm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/vsm2dfm". 200822-14:00:39,602 nipype.workflow INFO: [Node] Running "vsm2dfm" ("sdcflows.interfaces.fmap.FUGUEvsm2ANTSwarp") 200822-14:00:39,773 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.vsm2dfm". 200822-14:00:41,276 nipype.workflow INFO: [Job 56] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.vsm2dfm). 200822-14:00:41,283 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:43,282 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 0 jobs ready. Free memory (GB): 159.67/168.84, Free processors: 60/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_reference * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_mask * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:43,416 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/fmap_rpt". 200822-14:00:43,788 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_reference" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/unwarp_reference". 200822-14:00:43,809 nipype.workflow INFO: [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/vsm2dfm/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_maths_fmap_trans_rad_vsm_unmasked_desc-field_sdcwarp.nii.gz 200822-14:00:43,830 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/unwarp_mask". 200822-14:00:43,856 nipype.workflow INFO: [Node] Running "unwarp_mask" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation NearestNeighbor --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/vsm2dfm/sub-aam063_run-04_phasediff_rads_unwrapped_recentered_filt_demean_maths_fmap_trans_rad_vsm_unmasked_desc-field_sdcwarp.nii.gz 200822-14:00:43,934 nipype.workflow INFO: [Node] Running "fmap_rpt" ("sdcflows.interfaces.reportlets.FieldmapReportlet") 200822-14:00:44,692 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_mask". 200822-14:00:45,280 nipype.workflow INFO: [Job 81] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_mask). 200822-14:00:45,287 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 159.87/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_reference * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:45,623 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200822-14:00:46,282 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_reference". 200822-14:00:47,281 nipype.workflow INFO: [Job 83] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.unwarp_reference). 200822-14:00:47,288 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 159.87/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:47,728 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/unwarp_mask/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200822-14:00:48,139 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200822-14:00:49,285 nipype.workflow INFO: [Job 82] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 200822-14:00:49,291 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:49,401 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr". 200822-14:00:49,415 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 200822-14:00:49,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr". 200822-14:00:49,797 nipype.workflow INFO: [Job 84] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.check_hdr). 200822-14:00:51,288 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:53,291 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 159.87/168.84, Free processors: 61/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:53,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200822-14:00:54,90 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_scaled.nii.gz --mask-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz -r 200822-14:00:54,675 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt". 200822-14:00:55,289 nipype.workflow INFO: [Job 95] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.fmap_rpt). 200822-14:00:55,295 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:55,408 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.ds_report_fmap" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/fmap2field_wf/ds_report_fmap". 200822-14:00:55,422 nipype.workflow INFO: [Node] Running "ds_report_fmap" ("niworkflows.interfaces.bids.DerivativesDataSink") 200822-14:00:55,784 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.ds_report_fmap". 200822-14:00:55,784 nipype.workflow INFO: [Job 96] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.fmap2field_wf.ds_report_fmap). 200822-14:00:57,295 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:58,564 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200822-14:00:59,293 nipype.workflow INFO: [Job 85] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct). 200822-14:00:59,299 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:00:59,600 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200822-14:01:01,300 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:01,433 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m 200822-14:01:02,948 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200822-14:01:03,299 nipype.workflow INFO: [Job 86] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 200822-14:01:03,305 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:03,589 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200822-14:01:03,599 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz 200822-14:01:04,126 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200822-14:01:05,300 nipype.workflow INFO: [Job 87] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 200822-14:01:05,307 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:05,658 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200822-14:01:05,668 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 200822-14:01:05,866 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200822-14:01:07,302 nipype.workflow INFO: [Job 88] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 200822-14:01:07,309 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:07,526 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize". 200822-14:01:07,701 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 200822-14:01:09,309 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:09,575 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize". 200822-14:01:11,307 nipype.workflow INFO: [Job 89] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize). 200822-14:01:11,313 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:13,314 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.17/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:13,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200822-14:01:13,838 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200822-14:01:13,991 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200822-14:01:15,311 nipype.workflow INFO: [Job 90] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 200822-14:01:15,317 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:15,548 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200822-14:01:17,314 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:17,646 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200822-14:01:18,49 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200822-14:01:19,315 nipype.workflow INFO: [Job 91] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 200822-14:01:19,321 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:21,323 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.17/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:21,784 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200822-14:01:21,798 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200822-14:01:21,904 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200822-14:01:23,320 nipype.workflow INFO: [Job 92] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 200822-14:01:23,327 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:23,691 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200822-14:01:25,322 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:25,842 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz 200822-14:01:26,52 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200822-14:01:27,325 nipype.workflow INFO: [Job 93] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks). 200822-14:01:27,331 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:27,686 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200822-14:01:29,331 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.07/168.84, Free processors: 62/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:01:29,830 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/sdc_estimate_wf/sdc_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200822-14:01:30,54 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200822-14:01:31,333 nipype.workflow INFO: [Job 94] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.sdc_estimate_wf.sdc_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask). 200822-14:01:31,336 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 160.27/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:02:00,140 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt". 200822-14:02:01,389 nipype.workflow INFO: [Job 29] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.mcflirt). 200822-14:02:01,395 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 160.84/168.84, Free processors: 64/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:02:01,508 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_rmsd_header" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_rmsd_header". 200822-14:02:01,692 nipype.workflow INFO: [Node] Running "add_rmsd_header" ("niworkflows.interfaces.utils.AddTSVHeader") 200822-14:02:02,12 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_rmsd_header". 200822-14:02:02,13 nipype.workflow INFO: [Job 30] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_rmsd_header). 200822-14:02:03,394 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 160.78/168.84, Free processors: 55/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:02:04,217 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_hmc_wf/normalize_motion". 200822-14:02:04,256 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_hmc_wf/fsl2itk". 200822-14:02:04,425 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 200822-14:02:04,460 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion". 200822-14:02:04,939 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 200822-14:02:05,391 nipype.workflow INFO: [Job 31] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.normalize_motion). 200822-14:02:05,398 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 160.79/168.84, Free processors: 56/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:02:05,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_motion_headers". 200822-14:02:05,511 nipype.workflow INFO: [Node] Running "add_motion_headers" ("niworkflows.interfaces.utils.AddTSVHeader") 200822-14:02:05,951 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers". 200822-14:02:05,951 nipype.workflow INFO: [Job 32] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_motion_headers). 200822-14:02:06,263 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_confounds_wf/fdisp". 200822-14:02:07,402 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 0 jobs ready. Free memory (GB): 158.34/168.84, Free processors: 55/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:02:08,466 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 200822-14:02:08,523 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp". 200822-14:02:09,394 nipype.workflow INFO: [Job 33] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.fdisp). 200822-14:02:09,401 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 160.79/168.84, Free processors: 56/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1 200822-14:03:48,997 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1". 200822-14:03:49,509 nipype.workflow INFO: [Job 163] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon1). 200822-14:03:49,515 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 165.79/168.84, Free processors: 64/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:03:51,513 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 165.59/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:03:52,735 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm". 200822-14:03:52,976 nipype.workflow INFO: [Node] Running "fsnative2t1w_xfm" ("niworkflows.interfaces.freesurfer.PatchedRobustRegister"), a CommandLine Interface with command: mri_robust_register --satit --iscale --lta /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --mov /output/freesurfer/sub-aam063/mri/T1.mgz --dst /data/sub-aam063/anat/sub-aam063_T1w.nii 200822-14:04:35,799 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk". 200822-14:04:37,558 nipype.workflow INFO: [Job 34] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_hmc_wf.fsl2itk). 200822-14:04:37,561 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 165.64/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:04:37,685 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/merge_xforms". 200822-14:04:37,728 nipype.workflow INFO: [Node] Running "merge_xforms" ("nipype.interfaces.utility.base.Merge") 200822-14:04:38,53 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms". 200822-14:04:38,53 nipype.workflow INFO: [Job 57] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge_xforms). 200822-14:04:39,565 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 165.64/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:04:41,564 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 147.53/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:04:41,903 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_transform". 200822-14:04:42,479 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200822-14:04:52,395 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm". 200822-14:04:53,577 nipype.workflow INFO: [Job 164] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm). 200822-14:04:53,583 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 147.73/168.84, Free processors: 64/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:04:53,696 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_inv" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_derivatives_wf/lta2itk_inv". 200822-14:04:53,707 nipype.workflow INFO: [Node] Running "lta2itk_inv" ("niworkflows.interfaces.nitransforms.ConcatenateXFMs") 200822-14:04:54,236 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_inv". 200822-14:04:54,236 nipype.workflow INFO: [Job 165] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_inv). 200822-14:04:55,581 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 147.53/168.84, Free processors: 63/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:04:55,695 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_fsnative_t1w" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_derivatives_wf/ds_fsnative_t1w". 200822-14:04:55,709 nipype.workflow INFO: [Node] Running "ds_fsnative_t1w" ("smriprep.interfaces.DerivativesDataSink") 200822-14:04:56,72 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_fsnative_t1w". 200822-14:04:56,72 nipype.workflow INFO: [Job 166] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_fsnative_t1w). 200822-14:04:57,67 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/t1w2fsnative_xfm". 200822-14:04:57,94 nipype.workflow INFO: [Node] Running "t1w2fsnative_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --invert --outlta /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/t1w2fsnative_xfm/out.lta 200822-14:04:57,397 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm". 200822-14:04:57,580 nipype.workflow INFO: [Job 167] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm). 200822-14:04:57,586 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 147.73/168.84, Free processors: 64/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:04:57,686 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_fwd" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_derivatives_wf/lta2itk_fwd". 200822-14:04:57,697 nipype.workflow INFO: [Node] Running "lta2itk_fwd" ("niworkflows.interfaces.nitransforms.ConcatenateXFMs") 200822-14:04:58,11 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_fwd". 200822-14:04:58,11 nipype.workflow INFO: [Job 168] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_fwd). 200822-14:04:59,585 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 147.73/168.84, Free processors: 64/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:04:59,687 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsnative" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_fsnative". 200822-14:04:59,696 nipype.workflow INFO: [Node] Running "ds_t1w_fsnative" ("smriprep.interfaces.DerivativesDataSink") 200822-14:05:00,41 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsnative". 200822-14:05:00,41 nipype.workflow INFO: [Job 169] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsnative). 200822-14:05:01,586 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 147.73/168.84, Free processors: 64/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:09:10,913 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform". 200822-14:09:11,890 nipype.workflow INFO: [Job 58] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_transform). 200822-14:09:11,897 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:09:13,894 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 163.57/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:09:14,522 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/merge". 200822-14:09:14,994 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200822-14:10:30,160 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge". 200822-14:10:32,49 nipype.workflow INFO: [Job 59] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.merge). 200822-14:10:32,55 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:10:34,56 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.83/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:10:34,106 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/validate". 200822-14:10:34,477 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200822-14:10:34,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate". 200822-14:10:36,53 nipype.workflow INFO: [Job 60] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.validate). 200822-14:10:36,59 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:10:36,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 200822-14:10:36,209 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200822-14:10:37,690 nipype.interface INFO: stderr 2020-08-22T14:10:37.689777:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200822-14:10:37,690 nipype.interface INFO: stderr 2020-08-22T14:10:37.689777:++ Authored by: RW Cox 200822-14:10:37,693 nipype.interface INFO: stderr 2020-08-22T14:10:37.693702:** AFNI converts NIFTI_datatype=4 (INT16) in file /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 200822-14:10:37,693 nipype.interface INFO: stderr 2020-08-22T14:10:37.693702: Warnings of this type will be muted for this session. 200822-14:10:37,694 nipype.interface INFO: stderr 2020-08-22T14:10:37.693702: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200822-14:10:37,699 nipype.interface INFO: stderr 2020-08-22T14:10:37.698974:++ Coarse del was 10, replaced with 4 200822-14:10:38,56 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 164.84/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:10:59,514 nipype.interface INFO: stderr 2020-08-22T14:10:59.514740:++ Max displacement in automask = 0.07 (mm) at sub-brick 5 200822-14:10:59,515 nipype.interface INFO: stderr 2020-08-22T14:10:59.514740:++ Max delta displ in automask = 0.07 (mm) at sub-brick 12 200822-14:11:00,909 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 200822-14:11:02,88 nipype.workflow INFO: [Job 61] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref). 200822-14:11:02,92 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:02,217 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/calc_dummy_scans". 200822-14:11:02,228 nipype.workflow INFO: [Node] Running "calc_dummy_scans" ("nipype.interfaces.utility.wrappers.Function") 200822-14:11:02,236 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 200822-14:11:02,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans". 200822-14:11:02,573 nipype.workflow INFO: [Job 80] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.calc_dummy_scans). 200822-14:11:02,581 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 200822-14:11:04,96 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.64/168.84, Free processors: 64/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:08,422 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 200822-14:11:10,100 nipype.workflow INFO: [Job 62] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff). 200822-14:11:10,104 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:10,211 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 200822-14:11:10,244 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 200822-14:11:12,108 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.64/168.84, Free processors: 64/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:13,90 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 200822-14:11:14,105 nipype.workflow INFO: [Job 63] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm). 200822-14:11:14,109 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:14,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 200822-14:11:14,251 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 0 --input /templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 200822-14:11:16,113 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.64/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:16,588 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 200822-14:11:18,112 nipype.workflow INFO: [Job 64] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask). 200822-14:11:18,119 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:18,221 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200822-14:11:18,254 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 200822-14:11:18,642 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200822-14:11:20,115 nipype.workflow INFO: [Job 65] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate). 200822-14:11:20,121 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:20,220 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr". 200822-14:11:20,228 nipype.workflow INFO: [Node] Running "check_hdr" ("niworkflows.interfaces.images.MatchHeader") 200822-14:11:20,565 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr". 200822-14:11:20,565 nipype.workflow INFO: [Job 66] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.check_hdr). 200822-14:11:22,115 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:22,213 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200822-14:11:22,376 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200822-14:11:24,123 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 165.64/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:25,671 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200822-14:11:26,121 nipype.workflow INFO: [Job 67] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct). 200822-14:11:26,128 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:26,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200822-14:11:26,245 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200822-14:11:27,794 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200822-14:11:28,124 nipype.workflow INFO: [Job 68] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass). 200822-14:11:28,130 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:28,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200822-14:11:28,248 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200822-14:11:28,835 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200822-14:11:30,125 nipype.workflow INFO: [Job 69] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate). 200822-14:11:30,131 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:30,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200822-14:11:30,276 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200822-14:11:30,500 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200822-14:11:32,127 nipype.workflow INFO: [Job 70] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask). 200822-14:11:32,134 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:32,237 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200822-14:11:32,248 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200822-14:11:34,90 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200822-14:11:34,130 nipype.workflow INFO: [Job 71] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize). 200822-14:11:34,136 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:34,239 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200822-14:11:34,252 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200822-14:11:34,443 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200822-14:11:36,132 nipype.workflow INFO: [Job 72] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize). 200822-14:11:36,138 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:36,240 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200822-14:11:36,251 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200822-14:11:36,710 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200822-14:11:38,136 nipype.workflow INFO: [Job 73] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass). 200822-14:11:38,142 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:38,246 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200822-14:11:38,257 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200822-14:11:38,285 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200822-14:11:40,138 nipype.workflow INFO: [Job 74] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2). 200822-14:11:40,144 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:40,247 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200822-14:11:40,264 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200822-14:11:40,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200822-14:11:42,141 nipype.workflow INFO: [Job 75] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks). 200822-14:11:42,147 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:11:42,250 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200822-14:11:42,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_confounds_wf/dvars". 200822-14:11:42,261 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200822-14:11:42,475 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200822-14:11:42,609 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 200822-14:11:44,143 nipype.workflow INFO: [Job 79] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask). 200822-14:11:44,150 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 163.39/168.84, Free processors: 71/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:12:02,382 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars". 200822-14:12:04,183 nipype.workflow INFO: [Job 76] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.dvars). 200822-14:12:04,189 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:12:04,289 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_std_dvars_header". 200822-14:12:04,297 nipype.workflow INFO: [Node] Running "add_std_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader") 200822-14:12:04,630 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header". 200822-14:12:04,630 nipype.workflow INFO: [Job 77] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_std_dvars_header). 200822-14:12:04,718 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/func_preproc_task_rest_wf/bold_confounds_wf/add_dvars_header". 200822-14:12:04,741 nipype.workflow INFO: [Node] Running "add_dvars_header" ("niworkflows.interfaces.utils.AddTSVHeader") 200822-14:12:05,96 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header". 200822-14:12:05,96 nipype.workflow INFO: [Job 78] Completed (fmriprep_wf.single_subject_aam063_wf.func_preproc_task_rest_wf.bold_confounds_wf.add_dvars_header). 200822-14:12:06,186 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm 200822-14:17:41,150 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm". 200822-14:17:42,791 nipype.workflow INFO: [Job 119] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.norm). 200822-14:17:42,797 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:17:42,902 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask". 200822-14:17:43,55 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz --interpolation Gaussian --output tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz --reference-image /data/sub-aam063/anat/sub-aam063_T1w.nii --transform [ /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ] 200822-14:17:44,797 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 167.84/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask 200822-14:18:13,361 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask". 200822-14:18:14,870 nipype.workflow INFO: [Job 120] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask). 200822-14:18:14,876 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:18:15,1 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask". 200822-14:18:15,85 nipype.workflow INFO: [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command: ThresholdImage 3 /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000 200822-14:18:16,443 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask". 200822-14:18:16,873 nipype.workflow INFO: [Job 121] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask). 200822-14:18:16,879 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:18:16,995 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask". 200822-14:18:17,5 nipype.workflow INFO: [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz PadImage /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 10 200822-14:18:18,701 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask". 200822-14:18:18,875 nipype.workflow INFO: [Job 122] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask). 200822-14:18:18,880 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask 200822-14:18:19,157 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask". 200822-14:18:19,166 nipype.workflow INFO: [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz MD /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 2 200822-14:18:21,34 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask". 200822-14:18:22,882 nipype.workflow INFO: [Job 123] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask). 200822-14:18:22,888 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:18:24,657 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask". 200822-14:18:24,700 nipype.workflow INFO: [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz GetLargestComponent /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 200822-14:18:24,892 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask 200822-14:18:26,577 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask". 200822-14:18:26,891 nipype.workflow INFO: [Job 124] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask). 200822-14:18:26,897 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:18:27,9 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos". 200822-14:18:27,37 nipype.workflow INFO: [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command: Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-aam063_T1w_maths_corrected.nii --likelihood-model Gaussian --mask-image /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-aam063_T1w_maths_corrected_labeled.nii] --use-random-seed 1 200822-14:18:28,898 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 165.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos 200822-14:19:18,710 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos". 200822-14:19:19,24 nipype.workflow INFO: [Job 125] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos). 200822-14:19:19,27 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:21,33 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm 200822-14:19:21,227 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm". 200822-14:19:21,286 nipype.workflow INFO: [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_maths_corrected_labeled_maths.nii PadImage /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-aam063_T1w_maths_corrected_labeled.nii 10 200822-14:19:22,455 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm". 200822-14:19:23,32 nipype.workflow INFO: [Job 126] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm). 200822-14:19:23,38 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:23,149 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels". 200822-14:19:25,38 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels 200822-14:19:25,183 nipype.workflow INFO: [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function") 200822-14:19:25,557 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels". 200822-14:19:27,39 nipype.workflow INFO: [Job 127] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels). 200822-14:19:27,45 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:27,161 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm". 200822-14:19:27,172 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf". 200822-14:19:27,175 nipype.workflow INFO: [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_maths_corrected_labeled_maths_class-03_maths.nii GetLargestComponent /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-aam063_T1w_maths_corrected_labeled_maths_class-03.nii 200822-14:19:27,182 nipype.workflow INFO: [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_maths_corrected_labeled_maths_class-01_maths.nii PadImage /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-aam063_T1w_maths_corrected_labeled_maths_class-01.nii -10 200822-14:19:28,154 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf". 200822-14:19:28,496 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm". 200822-14:19:29,41 nipype.workflow INFO: [Job 128] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf). 200822-14:19:29,44 nipype.workflow INFO: [Job 136] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm). 200822-14:19:29,49 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.44/168.84, Free processors: 78/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf 200822-14:19:29,69 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm". 200822-14:19:29,84 nipype.workflow INFO: [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_maths_corrected_labeled_maths_class-02_maths.nii GetLargestComponent /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-aam063_T1w_maths_corrected_labeled_maths_class-02.nii 200822-14:19:29,159 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm". 200822-14:19:29,178 nipype.workflow INFO: [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-aam063_T1w_maths_corrected_labeled_maths_class-03_maths.nii 3.0 09_relabel_wm.nii.gz 200822-14:19:29,368 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf". 200822-14:19:29,378 nipype.workflow INFO: [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_maths_corrected_labeled_maths_class-01_maths.nii ME /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-aam063_T1w_maths_corrected_labeled_maths_class-01.nii 10 200822-14:19:30,948 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm". 200822-14:19:31,43 nipype.workflow INFO: [Job 130] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm). 200822-14:19:31,49 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.44/168.84, Free processors: 78/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf 200822-14:19:31,155 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm". 200822-14:19:31,163 nipype.workflow INFO: [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii FillHoles /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-aam063_T1w_maths_corrected_labeled_maths_class-02_maths.nii 2 200822-14:19:31,436 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm". 200822-14:19:33,47 nipype.workflow INFO: [Job 137] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm). 200822-14:19:33,53 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 168.44/168.84, Free processors: 78/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf 200822-14:19:33,164 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm". 200822-14:19:33,172 nipype.workflow INFO: [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10 200822-14:19:34,795 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf". 200822-14:19:34,852 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm". 200822-14:19:35,49 nipype.workflow INFO: [Job 129] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf). 200822-14:19:35,52 nipype.workflow INFO: [Job 138] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm). 200822-14:19:35,57 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm 200822-14:19:37,814 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm". 200822-14:19:39,57 nipype.workflow INFO: [Job 131] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm). 200822-14:19:39,63 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:39,198 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm". 200822-14:19:39,249 nipype.workflow INFO: [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-aam063_T1w_maths_corrected_labeled_maths_class-02_maths.nii /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-aam063_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii 08_mult_gm.nii.gz 200822-14:19:40,326 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm". 200822-14:19:41,60 nipype.workflow INFO: [Job 132] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm). 200822-14:19:41,66 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:41,202 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm". 200822-14:19:41,212 nipype.workflow INFO: [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 08_mult_gm_maths.nii.gz addtozero /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-aam063_T1w_maths_corrected_labeled_maths_class-01_maths.nii 200822-14:19:43,67 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm 200822-14:19:45,715 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm". 200822-14:19:47,72 nipype.workflow INFO: [Job 133] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm). 200822-14:19:47,78 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:47,187 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm". 200822-14:19:47,228 nipype.workflow INFO: [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz 200822-14:19:48,102 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm". 200822-14:19:49,75 nipype.workflow INFO: [Job 134] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm). 200822-14:19:49,81 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:49,197 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm". 200822-14:19:49,204 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm". 200822-14:19:49,205 nipype.workflow INFO: [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10 200822-14:19:49,216 nipype.workflow INFO: [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz 200822-14:19:50,854 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm". 200822-14:19:51,76 nipype.workflow INFO: [Job 135] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm). 200822-14:19:51,82 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm 200822-14:19:51,182 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms". 200822-14:19:53,82 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.44/168.84, Free processors: 78/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm 200822-14:19:53,317 nipype.workflow INFO: [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge") 200822-14:19:53,322 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms". 200822-14:19:53,896 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm". 200822-14:19:55,83 nipype.workflow INFO: [Job 140] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm). 200822-14:19:55,86 nipype.workflow INFO: [Job 139] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms). 200822-14:19:55,92 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:55,201 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2". 200822-14:19:57,71 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm". 200822-14:19:57,84 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 168.44/168.84, Free processors: 78/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2 * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm 200822-14:19:57,89 nipype.workflow INFO: [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function") 200822-14:19:57,91 nipype.workflow INFO: [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10 200822-14:19:57,410 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2". 200822-14:19:58,684 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm". 200822-14:19:59,88 nipype.workflow INFO: [Job 141] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm). 200822-14:19:59,91 nipype.workflow INFO: [Job 142] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2). 200822-14:19:59,96 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:19:59,208 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7". 200822-14:19:59,216 nipype.workflow INFO: [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz 200822-14:20:01,96 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7 200822-14:20:03,394 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7". 200822-14:20:05,98 nipype.workflow INFO: [Job 143] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7). 200822-14:20:05,104 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:07,105 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7 200822-14:20:07,163 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7". 200822-14:20:07,172 nipype.workflow INFO: [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2 200822-14:20:10,330 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7". 200822-14:20:11,111 nipype.workflow INFO: [Job 144] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7). 200822-14:20:11,117 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:11,239 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7". 200822-14:20:11,251 nipype.workflow INFO: [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz 200822-14:20:13,114 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7 200822-14:20:13,406 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7". 200822-14:20:15,119 nipype.workflow INFO: [Job 145] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7). 200822-14:20:15,125 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:15,230 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7". 200822-14:20:15,241 nipype.workflow INFO: [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4 200822-14:20:17,125 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7 200822-14:20:17,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7". 200822-14:20:19,127 nipype.workflow INFO: [Job 146] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7). 200822-14:20:19,133 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:19,244 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7". 200822-14:20:19,259 nipype.workflow INFO: [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2 200822-14:20:21,135 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7 200822-14:20:26,84 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7". 200822-14:20:27,146 nipype.workflow INFO: [Job 147] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7). 200822-14:20:27,153 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:27,272 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2". 200822-14:20:27,301 nipype.workflow INFO: [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 200822-14:20:29,155 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2 200822-14:20:31,590 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2". 200822-14:20:33,162 nipype.workflow INFO: [Job 148] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2). 200822-14:20:33,168 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:33,272 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2". 200822-14:20:33,310 nipype.workflow INFO: [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5 200822-14:20:35,139 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2". 200822-14:20:35,164 nipype.workflow INFO: [Job 149] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2). 200822-14:20:35,170 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:35,268 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2". 200822-14:20:35,277 nipype.workflow INFO: [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5 200822-14:20:37,172 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2 200822-14:20:38,583 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2". 200822-14:20:39,171 nipype.workflow INFO: [Job 150] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2). 200822-14:20:39,177 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:39,281 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask". 200822-14:20:39,296 nipype.workflow INFO: [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10 200822-14:20:40,858 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask". 200822-14:20:41,174 nipype.workflow INFO: [Job 151] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask). 200822-14:20:41,180 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:41,287 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform". 200822-14:20:41,308 nipype.workflow INFO: [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function") 200822-14:20:41,539 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform". 200822-14:20:43,177 nipype.workflow INFO: [Job 152] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform). 200822-14:20:43,183 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:43,292 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform". 200822-14:20:43,321 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 200822-14:20:44,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform". 200822-14:20:44,532 nipype.workflow INFO: [Job 153] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform). 200822-14:20:45,182 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:45,276 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.sel_wm" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/sel_wm". 200822-14:20:45,286 nipype.workflow INFO: [Node] Running "sel_wm" ("nipype.interfaces.utility.base.Select") 200822-14:20:45,634 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.sel_wm". 200822-14:20:45,634 nipype.workflow INFO: [Job 154] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.sel_wm). 200822-14:20:47,187 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:20:47,287 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final". 200822-14:20:47,323 nipype.workflow INFO: [Node] Setting-up "_inu_n4_final0" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0". 200822-14:20:47,335 nipype.workflow INFO: [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /data/sub-aam063/anat/sub-aam063_T1w.nii --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-aam063_T1w_corrected.nii, sub-aam063_T1w_bias.nii ] -r --shrink-factor 4 --weight-image /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz 200822-14:20:49,186 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final 200822-14:21:18,104 nipype.workflow INFO: [Node] Finished "_inu_n4_final0". 200822-14:21:18,108 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final". 200822-14:21:19,250 nipype.workflow INFO: [Job 155] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final). 200822-14:21:19,257 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:21:19,383 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/apply_mask". 200822-14:21:19,428 nipype.workflow INFO: [Node] Setting-up "_apply_mask0" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0". 200822-14:21:19,439 nipype.workflow INFO: [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-aam063_T1w_corrected.nii -mas /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-aam063_T1w_corrected_masked.nii.gz 200822-14:21:20,639 nipype.workflow INFO: [Node] Finished "_apply_mask0". 200822-14:21:20,644 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.apply_mask". 200822-14:21:21,254 nipype.workflow INFO: [Job 156] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.apply_mask). 200822-14:21:21,260 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:21:21,366 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.copy_xform" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/copy_xform". 200822-14:21:21,380 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 200822-14:21:22,804 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.copy_xform". 200822-14:21:22,804 nipype.workflow INFO: [Job 157] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.brain_extraction_wf.copy_xform). 200822-14:21:23,259 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:21:23,351 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_preproc" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_preproc". 200822-14:21:23,360 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/trunc_mov". 200822-14:21:23,366 nipype.workflow INFO: [Node] Running "ds_t1w_preproc" ("smriprep.interfaces.DerivativesDataSink") 200822-14:21:23,378 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-aam063_T1w_corrected_xform_maths.nii TruncateImageIntensity /working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-aam063_T1w_corrected_xform.nii 0.01 0.999 256 200822-14:21:24,949 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 200822-14:21:30,582 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_preproc". 200822-14:21:30,583 nipype.workflow INFO: [Job 159] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_preproc). 200822-14:21:30,713 nipype.workflow INFO: [Job 158] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.anat_norm_wf.trunc_mov). 200822-14:21:30,715 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 168.64/168.84, Free processors: 79/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern 200822-14:21:31,91 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern". 200822-14:21:31,295 nipype.workflow INFO: [Node] Running "skull_strip_extern" ("niworkflows.interfaces.freesurfer.FSInjectBrainExtracted") 200822-14:21:32,708 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern". 200822-14:21:32,715 nipype.workflow INFO: [Job 170] Completed (fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern). 200822-14:21:32,717 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 168.84/168.84, Free processors: 80/80. 200822-14:21:32,940 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/working_dir/fmriprep_wf/single_subject_aam063_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol". 200822-14:21:33,260 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-aam063 -sd /output/freesurfer 200822-14:21:33,262 nipype.workflow INFO: [Node] Running "autorecon2_vol" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: recon-all -autorecon2-volonly -openmp 8 -subjid sub-aam063 -sd /output/freesurfer 200822-14:21:33,264 nipype.interface INFO: resume recon-all : recon-all -autorecon2-volonly -openmp 8 -subjid sub-aam063 -sd /output/freesurfer 200822-14:21:34,725 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 163.84/168.84, Free processors: 72/80. Currently running: * fmriprep_wf.single_subject_aam063_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol slurmstepd: error: *** JOB 382551 ON node45-001 CANCELLED AT 2020-08-22T15:51:52 ***