/home/dell/Software/anaconda3/bin/python /mnt/workdir/DCM/code/analysis/mri/preprocess/dwi_preprocess.py 1 sub-017 2.061210298143187 2 sub-018 0.8061078845378625 3 sub-022 0.9154916578926169 4 sub-024 0.8315623884790672 5 sub-025 1.5251046743850698 6 sub-036 0.6926173083808477 7 sub-037 0.8596949114453702 8 sub-050 0.7608641414179204 9 sub-055 0.7587088961921173 10 sub-075 0.5689259457440488 11 sub-082 0.6674602336865961 12 sub-084 0.5588678257358916 13 sub-086 0.5592701997706109 14 sub-089 0.5696511020890582 15 sub-092 0.5449246149216418 16 sub-103 0.8810423379838607 17 sub-123 0.8135927685902786 18 sub-151 0.5657690018999502 19 sub-167 0.5350066325975372 20 sub-172 0.9352627168620348 21 sub-183 0.5275461866908644 22 sub-185 0.5089529434549327 23 sub-196 0.6804028584691244 24 sub-206 1.026166402074443 25 sub-207 0.9338305133949453 26 sub-208 0.8512391477483702 27 sub-210 0.8560897632740285 28 sub-211 0.9518862467901256 29 sub-212 0.986666123669874 30 sub-213 0.8771234208878529 31 sub-221 0.8137766245134764 32 sub-228 1.110164288123965 33 sub-231 0.961118642878181 34 sub-238 0.7602688539166924 35 sub-239 0.7961455789644328 36 sub-240 0.7246116339098148 sub-060 connectome file does not exist. sub-065 connectome file does not exist. sub-076 connectome file does not exist. sub-095 connectome file does not exist. sub-110 connectome file does not exist. sub-119 connectome file does not exist. sub-126 connectome file does not exist. sub-165 connectome file does not exist. sub-173 connectome file does not exist. sub-174 connectome file does not exist. sub-175 connectome file does not exist. sub-176 connectome file does not exist. sub-177 connectome file does not exist. sub-178 connectome file does not exist. sub-179 connectome file does not exist. sub-180 connectome file does not exist. sub-181 connectome file does not exist. sub-182 connectome file does not exist. sub-184 connectome file does not exist. sub-186 connectome file does not exist. sub-187 connectome file does not exist. sub-188 connectome file does not exist. sub-189 connectome file does not exist. sub-190 connectome file does not exist. sub-191 connectome file does not exist. sub-192 connectome file does not exist. sub-193 connectome file does not exist. sub-194 connectome file does not exist. sub-195 connectome file does not exist. sub-197 connectome file does not exist. sub-198 connectome file does not exist. sub-199 connectome file does not exist. sub-200 connectome file does not exist. sub-201 connectome file does not exist. Command: qsiprep-docker /mnt/workdir/DCM/BIDS /mnt/workdir/DCM/BIDS/derivatives/qsiprep participant --participant_label sub-060 sub-065 sub-076 sub-095 sub-110 sub-119 sub-126 sub-165 sub-173 sub-174 sub-175 --output-resolution 2 --recon-only --recon_input /mnt/workdir/DCM/BIDS/derivatives/qsiprep --recon_spec /mnt/workdir/DCM/Docs/Reference/qsiprep/mrtrix_multishell_msmt_ACT-hsvs.json --fs-license-file /mnt/data/license.txt --freesurfer-input /mnt/workdir/DCM/BIDS/derivatives/freesurfer -w /mnt/workdir/DCM/working --custom_atlases /mnt/workdir/DCM/Docs/Reference/qsiprep/qsirecon_atlases --nthreads 88 --gpus all --stop-on-first-crash ['/home/dell/.local/bin/qsiprep-docker', '/mnt/workdir/DCM/BIDS', '/mnt/workdir/DCM/BIDS/derivatives/qsiprep', 'participant', '--participant_label', 'sub-060', 'sub-065', 'sub-076', 'sub-095', 'sub-110', 'sub-119', 'sub-126', 'sub-165', 'sub-173', 'sub-174', 'sub-175', '--output-resolution', '2', '--recon-only', '--recon_input', '/mnt/workdir/DCM/BIDS/derivatives/qsiprep', '--recon_spec', '/mnt/workdir/DCM/Docs/Reference/qsiprep/mrtrix_multishell_msmt_ACT-hsvs.json', '--fs-license-file', '/mnt/data/license.txt', '--freesurfer-input', '/mnt/workdir/DCM/BIDS/derivatives/freesurfer', '-w', '/mnt/workdir/DCM/working', '--custom_atlases', '/mnt/workdir/DCM/Docs/Reference/qsiprep/qsirecon_atlases', '--nthreads', '88', '--gpus', 'all', '--stop-on-first-crash'] RUNNING: docker run --rm -v /mnt/data/license.txt:/opt/freesurfer/license.txt:ro -v /mnt/workdir/DCM/BIDS:/data:ro -v /mnt/workdir/DCM/BIDS/derivatives/qsiprep:/qsiprep-output:ro -v /mnt/workdir/DCM/BIDS/derivatives/freesurfer:/sngl/freesurfer-input:ro --gpus all -v /mnt/workdir/DCM/Docs/Reference/qsiprep/mrtrix_multishell_msmt_ACT-hsvs.json:/sngl/spec/spec.json:ro -v /mnt/workdir/DCM/Docs/Reference/qsiprep/qsirecon_atlases:/atlas/qsirecon_atlases -v /mnt/workdir/DCM/BIDS/derivatives/qsiprep:/out -v /mnt/workdir/DCM/working:/scratch pennbbl/qsiprep:0.19.0 /data /out participant --recon-input /qsiprep-output --freesurfer-input /sngl/freesurfer-input --recon-spec /sngl/spec/spec.json --participant_label sub-060 sub-065 sub-076 sub-095 sub-110 sub-119 sub-126 sub-165 sub-173 sub-174 sub-175 --output-resolution 2 --recon-only --nthreads 88 --stop-on-first-crash -w /scratch WARNING:py.warnings:TemplateFlow: repository not found at . Populating a new TemplateFlow stub. If the path reported above is not the desired location for TemplateFlow, please set the TEMPLATEFLOW_HOME environment variable. WARNING:py.warnings:TemplateFlow: repository not found at . Populating a new TemplateFlow stub. If the path reported above is not the desired location for TemplateFlow, please set the TEMPLATEFLOW_HOME environment variable. 230925-11:42:07,292 nipype.workflow IMPORTANT: Running qsirecon version 0.19.0: * BIDS dataset path: /data. * Participant list: ['060', '065', '076', '095', '110', '119', '126', '165', '173', '174', '175']. * Run identifier: 20230925-114117_db0d9153-1891-4599-828e-2ccfe32b9585. 230925-11:42:07,293 nipype.workflow INFO: sub-060 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep IMPORTANT:nipype.workflow: Running qsirecon version 0.19.0: * BIDS dataset path: /data. * Participant list: ['060', '065', '076', '095', '110', '119', '126', '165', '173', '174', '175']. * Run identifier: 20230925-114117_db0d9153-1891-4599-828e-2ccfe32b9585. INFO:nipype.workflow:sub-060 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-060/dwi/sub-060_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-060 exists for 060 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:42:42,519 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-060/dwi/sub-060_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:42:42,520 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:42:42,521 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:42:42,521 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-060 exists for 060 230925-11:42:42,522 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:42:42,522 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:42:43,27 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:42:43,31 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:42:43,66 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:42:43,66 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.workflow:sub-065 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:42:43,92 nipype.workflow INFO: sub-065 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-065/dwi/sub-065_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-065 exists for 065 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:43:16,962 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-065/dwi/sub-065_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:43:16,963 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:43:16,964 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:43:16,964 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-065 exists for 065 230925-11:43:16,964 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:43:16,965 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:43:16,970 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:43:16,974 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:43:17,9 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:43:17,9 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.workflow:sub-076 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:43:17,34 nipype.workflow INFO: sub-076 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep valid_subjects 230925-11:43:51,182 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-076/dwi/sub-076_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:43:51,183 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:43:51,184 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:43:51,184 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-076 exists for 076 230925-11:43:51,184 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:43:51,185 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:43:51,190 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:43:51,193 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-076/dwi/sub-076_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-076 exists for 076 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:43:51,229 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:43:51,229 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:43:51,253 nipype.workflow INFO: sub-095 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep INFO:nipype.workflow:sub-095 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-095/dwi/sub-095_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-095 exists for 095 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:44:25,493 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-095/dwi/sub-095_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:44:25,494 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:44:25,495 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:44:25,495 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-095 exists for 095 230925-11:44:25,496 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:44:25,496 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:44:25,501 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:44:25,505 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:44:25,540 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:44:25,540 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.workflow:sub-110 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:44:25,565 nipype.workflow INFO: sub-110 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:45:00,46 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-110/dwi/sub-110_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:45:00,47 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:45:00,48 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:45:00,48 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-110 exists for 110 230925-11:45:00,48 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:45:00,49 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:45:00,54 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:45:00,57 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-110/dwi/sub-110_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-110 exists for 110 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:45:00,92 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:45:00,93 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:45:00,117 nipype.workflow INFO: sub-119 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep INFO:nipype.workflow:sub-119 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:45:34,496 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-119/dwi/sub-119_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:45:34,497 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:45:34,498 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:45:34,499 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-119 exists for 119 230925-11:45:34,499 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:45:34,500 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:45:34,505 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-119/dwi/sub-119_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-119 exists for 119 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:45:34,508 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:45:34,543 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:45:34,543 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.workflow:sub-126 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:45:34,568 nipype.workflow INFO: sub-126 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-126/dwi/sub-126_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-126 exists for 126 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:46:09,24 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-126/dwi/sub-126_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:46:09,25 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:46:09,26 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:46:09,26 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-126 exists for 126 230925-11:46:09,26 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:46:09,27 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:46:09,32 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:46:09,36 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:46:09,71 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:46:09,71 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.workflow:sub-165 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:46:09,95 nipype.workflow INFO: sub-165 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:46:43,593 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-165/dwi/sub-165_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:46:43,594 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:46:43,595 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:46:43,595 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-165 exists for 165 230925-11:46:43,596 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:46:43,597 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:46:43,602 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:46:43,605 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-165/dwi/sub-165_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-165 exists for 165 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:46:43,640 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:46:43,640 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:46:43,665 nipype.workflow INFO: sub-173 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep INFO:nipype.workflow:sub-173 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-173/dwi/sub-173_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-173 exists for 173 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:47:18,138 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-173/dwi/sub-173_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:47:18,139 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:47:18,140 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:47:18,140 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-173 exists for 173 230925-11:47:18,140 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:47:18,141 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:47:18,146 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:47:18,149 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:47:18,185 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:47:18,185 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.workflow:sub-174 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:47:18,210 nipype.workflow INFO: sub-174 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:47:52,457 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-174/dwi/sub-174_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:47:52,458 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:47:52,459 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:47:52,459 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-174 exists for 174 230925-11:47:52,459 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:47:52,460 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:47:52,465 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-174/dwi/sub-174_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-174 exists for 174 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:47:52,468 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 230925-11:47:52,503 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:47:52,503 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.workflow:sub-175 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:47:52,528 nipype.workflow INFO: sub-175 not in /qsiprep-output, trying recon_input=/qsiprep-output/qsiprep 230925-11:48:26,913 nipype.workflow INFO: found ['/qsiprep-output/qsiprep/sub-175/dwi/sub-175_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep 230925-11:48:26,914 nipype.workflow INFO: Found usable QSIPrep-preprocessed T1w image and mask. 230925-11:48:26,915 nipype.workflow INFO: Found T1w-to-template transforms 230925-11:48:26,915 nipype.workflow INFO: Freesurfer directory /sngl/freesurfer-input/sub-175 exists for 175 230925-11:48:26,916 nipype.workflow INFO: FreeSurfer data will be used to create a HSVS 5tt image. 230925-11:48:26,916 nipype.workflow INFO: HSVS 5tt imaged will be registered to the QSIPrep T1w image. 230925-11:48:26,921 nipype.workflow INFO: Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} 230925-11:48:26,925 nipype.workflow INFO: Transforming ODF ROIs into DWI space for visual report. INFO:nipype.workflow:found ['/qsiprep-output/qsiprep/sub-175/dwi/sub-175_dir-PA_space-T1w_desc-preproc_dwi.nii.gz'] in /qsiprep-output/qsiprep INFO:nipype.workflow:Found usable QSIPrep-preprocessed T1w image and mask. INFO:nipype.workflow:Found T1w-to-template transforms INFO:nipype.workflow:Freesurfer directory /sngl/freesurfer-input/sub-175 exists for 175 INFO:nipype.workflow:FreeSurfer data will be used to create a HSVS 5tt image. INFO:nipype.workflow:HSVS 5tt imaged will be registered to the QSIPrep T1w image. INFO:nipype.workflow:Anatomical (T1w) available for recon: {'has_qsiprep_5tt_hsvs': True, 'has_freesurfer_5tt_hsvs': True, 'has_freesurfer': True, 'has_qsiprep_t1w': True, 'has_qsiprep_t1w_transforms': True} INFO:nipype.workflow:Transforming ODF ROIs into DWI space for visual report. 230925-11:48:26,960 nipype.interface INFO: Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} 230925-11:48:26,960 nipype.interface INFO: Using 8 threads in MRtrix3 INFO:nipype.interface:Response configuration: {'algorithm': 'dhollander', 'nthreads': 8} INFO:nipype.interface:Using 8 threads in MRtrix3 IMPORTANT:nipype.workflow:Works derived from this qsiprep execution should include the following boilerplate: Reconstruction was performed using *QSIprep* 0.19.0, which is based on *Nipype* 1.8.6 (@nipype1; @nipype2; RRID:SCR_002502). QSIPrep-preprocessed T1w images and brain masks were used. A hybrid surface/volume segmentation was created [Smith 2020].FreeSurfer outputs were registered to the QSIPrep outputs.MRtrix3 Reconstruction : Multi-tissue fiber response functions were estimated using the dhollander algorithm. FODs were estimated via constrained spherical deconvolution (CSD, @originalcsd, @tournier2008csd) using an unsupervised multi-tissue method (@dhollander2019response, @dhollander2016unsupervised). Reconstruction was done using MRtrix3 (@mrtrix3). FODs were intensity-normalized using mtnormalize (@mtnormalize). Many internal operations of *qsiprep* use *Nilearn* 0.10.1 [@nilearn, RRID:SCR_001362] and *Dipy* 1.5.0[@dipy]. For more details of the pipeline, see [the section corresponding to workflows in *qsiprep*'s documentation](https://qsiprep.readthedocs.io/en/latest/workflows.html "qsiprep's documentation"). ### References 230925-11:48:29,468 nipype.workflow IMPORTANT: Works derived from this qsiprep execution should include the following boilerplate: Reconstruction was performed using *QSIprep* 0.19.0, which is based on *Nipype* 1.8.6 (@nipype1; @nipype2; RRID:SCR_002502). QSIPrep-preprocessed T1w images and brain masks were used. A hybrid surface/volume segmentation was created [Smith 2020].FreeSurfer outputs were registered to the QSIPrep outputs.MRtrix3 Reconstruction : Multi-tissue fiber response functions were estimated using the dhollander algorithm. FODs were estimated via constrained spherical deconvolution (CSD, @originalcsd, @tournier2008csd) using an unsupervised multi-tissue method (@dhollander2019response, @dhollander2016unsupervised). Reconstruction was done using MRtrix3 (@mrtrix3). FODs were intensity-normalized using mtnormalize (@mtnormalize). Many internal operations of *qsiprep* use *Nilearn* 0.10.1 [@nilearn, RRID:SCR_001362] and *Dipy* 1.5.0[@dipy]. For more details of the pipeline, see [the section corresponding to workflows in *qsiprep*'s documentation](https://qsiprep.readthedocs.io/en/latest/workflows.html "qsiprep's documentation"). ### References [WARNING] This document format requires a nonempty element. Please specify either 'title' or 'pagetitle' in the metadata. Falling back to 'CITATION' 230925-11:48:35,992 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:35,994 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,12 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,14 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,32 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,36 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,47 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,51 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,51 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.024718s. 230925-11:48:36,68 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,68 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.024158s. 230925-11:48:36,71 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,92 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,95 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,100 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.02851s. 230925-11:48:36,113 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.027999s. 230925-11:48:36,114 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,117 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,133 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.025771s. 230925-11:48:36,135 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,138 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,155 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.023933s. 230925-11:48:36,169 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,171 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,175 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,177 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,179 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.024045s. 230925-11:48:36,188 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.fs_source" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/fs_source". 230925-11:48:36,190 nipype.workflow INFO: [Node] Executing "fs_source" <nipype.interfaces.io.FreeSurferSource> 230925-11:48:36,191 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.017982s. 230925-11:48:36,202 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.026081s. 230925-11:48:36,230 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.020527s. 230925-11:48:36,236 nipype.workflow INFO: [Node] Finished "fs_source", elapsed time 0.019134s. 230925-11:48:37,623 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,626 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,626 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,627 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,627 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,628 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,628 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,628 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,629 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,630 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,631 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_fs_brain" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_fs_brain". 230925-11:48:37,639 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,641 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,641 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,642 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,645 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,645 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,646 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,647 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,648 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,649 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:37,650 nipype.workflow INFO: [Node] Executing "convert_fs_brain" <nipype.interfaces.mrtrix3.utils.MRConvert> 230925-11:48:38,615 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.855904s. 230925-11:48:38,619 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.886726s. 230925-11:48:38,624 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.891512s. 230925-11:48:38,632 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.901261s. 230925-11:48:38,640 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.889855s. 230925-11:48:38,641 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.890353s. 230925-11:48:38,643 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.890767s. 230925-11:48:38,649 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.912398s. 230925-11:48:38,650 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.901852s. 230925-11:48:38,651 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.895228s. 230925-11:48:38,675 nipype.workflow INFO: [Node] Finished "convert_fs_brain", elapsed time 0.93994s. 230925-11:48:38,980 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:38,982 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,5 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,7 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,8 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.002966s. 230925-11:48:39,24 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,26 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,37 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,38 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,44 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,52 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.002916s. 230925-11:48:39,53 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,55 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,58 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,60 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,63 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,73 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,74 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,75 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,76 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,80 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002815s. 230925-11:48:39,83 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,84 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,84 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,85 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.003201s. 230925-11:48:39,86 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,92 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.003996s. 230925-11:48:39,101 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.00292s. 230925-11:48:39,105 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,105 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,105 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,107 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,107 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,108 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,110 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002893s. 230925-11:48:39,112 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.003045s. 230925-11:48:39,112 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002984s. 230925-11:48:39,122 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,124 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,132 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002561s. 230925-11:48:39,133 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002556s. 230925-11:48:39,141 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,143 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,156 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,158 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,159 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,162 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,162 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,164 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,164 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,166 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,166 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,168 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,169 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002951s. 230925-11:48:39,171 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.00273s. 230925-11:48:39,187 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,187 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,189 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,189 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,190 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.003043s. 230925-11:48:39,192 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,193 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,193 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,195 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,202 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,204 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,214 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,216 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,219 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.002866s. 230925-11:48:39,219 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.002953s. 230925-11:48:39,220 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,222 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,234 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.003317s. 230925-11:48:39,241 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002825s. 230925-11:48:39,243 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,245 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,263 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.anat_ingress" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/anat_ingress". 230925-11:48:39,265 nipype.workflow INFO: [Node] Executing "anat_ingress" <qsiprep.interfaces.anatomical.QsiprepAnatomicalIngress> 230925-11:48:39,270 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.002719s. 230925-11:48:39,271 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.create_5tt_hsvs" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/create_5tt_hsvs". 230925-11:48:39,273 nipype.workflow INFO: [Node] Executing "create_5tt_hsvs" <qsiprep.interfaces.mrtrix.GenerateMasked5tt> 230925-11:48:39,277 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,278 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,289 nipype.workflow INFO: [Node] Finished "anat_ingress", elapsed time 0.002661s. 230925-11:48:39,302 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002429s. 230925-11:48:39,342 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.qsiprep_preprocessed_dwi_data" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/qsiprep_preprocessed_dwi_data". 230925-11:48:39,344 nipype.workflow INFO: [Node] Executing "qsiprep_preprocessed_dwi_data" <qsiprep.interfaces.bids.QsiReconIngress> 230925-11:48:39,347 nipype.workflow INFO: [Node] Finished "qsiprep_preprocessed_dwi_data", elapsed time 0.002526s. 230925-11:48:39,662 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:48:39,693 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:48:42,160 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:48:42,183 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:48:42,696 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.515485s. labelconvert: Image "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:48:50,214 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:48:50,248 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:48:50,830 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 8.2823s. 230925-11:48:52,796 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:48:52,818 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:48:52,849 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:48:52,853 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:48:53,343 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.503796s. 230925-11:48:56,736 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-060/dwi/sub-060_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:48:59,505 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:48:59,547 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:49:01,742 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 8.479861s. 230925-11:49:01,937 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:49:02,68 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:49:02,201 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:49:02,205 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:49:02,226 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 9.349307s. 230925-11:49:02,241 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:49:02,572 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.50307s. 230925-11:49:05,882 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-065/dwi/sub-065_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:49:09,662 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:49:09,694 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:49:10,798 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:49:11,80 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 8.873795s. 230925-11:49:12,19 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 9.395941s. 230925-11:49:12,282 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:49:12,291 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:49:12,295 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:49:12,301 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:49:12,824 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.52035s. 230925-11:49:17,125 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-076/dwi/sub-076_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:49:18,943 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:49:18,981 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:49:21,581 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:49:21,585 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:49:21,589 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:49:21,601 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:49:22,126 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 9.446714s. 230925-11:49:22,267 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.649066s. 230925-11:49:22,512 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:49:22,804 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 10.48751s. 230925-11:49:25,541 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-095/dwi/sub-095_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:49:27,596 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:49:27,630 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:49:29,782 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 7.81107s. 230925-11:49:30,96 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:49:30,245 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:49:30,249 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:49:30,251 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:49:30,830 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.556362s. 230925-11:49:31,93 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:49:31,345 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 9.716169s. 230925-11:49:34,11 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-110/dwi/sub-110_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:49:36,843 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:49:36,903 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:49:39,2 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 8.562595s. 230925-11:49:39,498 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:49:39,504 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:49:39,530 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:49:39,562 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:49:39,924 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:49:40,151 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.599439s. 230925-11:49:40,198 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 9.926086s. 230925-11:49:43,265 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-119/dwi/sub-119_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:49:46,144 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:49:46,176 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:49:48,261 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:49:48,504 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 8.97798s. 230925-11:49:48,786 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:49:48,793 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:49:48,800 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:49:48,805 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:49:49,186 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 9.241718s. 230925-11:49:49,514 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.691535s. 230925-11:49:53,436 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-126/dwi/sub-126_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:49:55,239 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:49:55,273 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:49:57,895 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:49:57,902 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:49:57,902 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:49:57,906 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:49:58,463 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.536631s. 230925-11:49:58,566 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 9.409668s. 230925-11:49:58,658 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:49:58,927 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 10.106491s. 230925-11:50:02,569 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-165/dwi/sub-165_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:50:04,389 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:50:04,417 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:50:07,27 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:50:07,39 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:50:07,42 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:50:07,48 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:50:07,560 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:50:07,658 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 9.371043s. 230925-11:50:07,698 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.645423s. 230925-11:50:07,794 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 9.870193s. 230925-11:50:11,157 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-173/dwi/sub-173_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:50:13,394 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.resample_mask" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/resample_mask". 230925-11:50:13,428 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.qsirecon_anat_wf.odf_rois" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/odf_rois". 230925-11:50:16,44 nipype.workflow INFO: [Node] Executing "resample_mask" <nipype.interfaces.afni.utils.Resample> 230925-11:50:16,54 nipype.workflow INFO: [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms> 230925-11:50:16,57 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:50:16,62 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:50:16,381 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:50:16,622 nipype.workflow INFO: [Node] Finished "resample_mask", elapsed time 0.555752s. 230925-11:50:16,652 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 9.582965s. 230925-11:50:16,838 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 9.33454s. 230925-11:50:19,927 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-174/dwi/sub-174_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" labelconvert: Image "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" stored with floating-point type; need to check for non-integer or negative values labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" labelconvert: [100%] Verifying parcellation image labelconvert: [100%] uncompressing image "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/qsirecon_anat_wf/get_atlases/DMN_atlas_lps_to_dwi.nii.gz" 230925-11:50:24,187 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,188 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,191 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,199 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,200 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,203 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,209 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,240 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,250 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,420 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:24,444 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.register_to_qsiprep" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/register_to_qsiprep". 230925-11:50:25,193 nipype.workflow INFO: [Node] Finished "odf_rois", elapsed time 8.654982s. 230925-11:50:25,804 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:50:26,74 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 9.990905s. 230925-11:50:26,943 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:26,946 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:26,954 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:26,973 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:26,979 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:26,994 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.create_mif" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/create_mif". 230925-11:50:26,999 nipype.workflow INFO: [Node] Executing "create_mif" <qsiprep.interfaces.mrtrix.MRTrixIngress> 230925-11:50:27,0 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:27,16 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:27,34 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:27,41 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:27,66 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:27,289 nipype.workflow INFO: [Node] Executing "register_to_qsiprep" <nipype.interfaces.ants.registration.Registration> 230925-11:50:28,147 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:28,150 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:28,961 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:28,964 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:29,904 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:29,907 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:30,829 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:30,833 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:31,367 nipype.interface INFO: mrconvert: [100%] uncompressing image "/qsiprep-output/qsiprep/sub-175/dwi/sub-175_dir-PA_space-T1w_desc-preproc_dwi.nii.gz" 230925-11:50:31,744 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:31,747 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:32,583 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:32,587 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:33,671 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:33,675 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:37,663 nipype.interface INFO: mrconvert: [100%] copying from "/qsiprep-o...T1w_desc-preproc_dwi.nii.gz" to "/scratch/q...ce-T1w_desc-preproc_dwi.mif" 230925-11:50:37,708 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:37,712 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:38,76 nipype.workflow INFO: [Node] Finished "create_mif", elapsed time 11.053491s. 230925-11:50:42,80 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 13.928982s. 230925-11:50:42,316 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 13.350496s. 230925-11:50:43,819 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 13.910639s. 230925-11:50:45,89 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 14.254991s. 230925-11:50:45,881 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 14.13263s. 230925-11:50:45,995 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:50:46,0 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:50:46,807 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 14.21905s. 230925-11:50:47,223 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:47,226 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:47,231 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:47,234 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:47,820 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 14.144426s. 230925-11:50:48,13 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:50:48,15 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:50:48,19 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:50:48,19 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:50:49,340 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_response". 230925-11:50:49,344 nipype.workflow INFO: [Node] Executing "estimate_response" <qsiprep.interfaces.mrtrix.SS3TDwi2Response> 230925-11:50:50,20 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:50:50,27 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:50:52,22 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 14.308334s. 230925-11:50:54,19 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:50:54,26 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:51:04,312 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 17.075979s. 230925-11:51:04,621 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 17.393254s. 230925-11:51:06,0 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:51:06,1 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:51:06,6 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:51:06,7 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:51:06,188 nipype.workflow INFO: [Node] Finished "estimate_response", elapsed time 16.842678s. 230925-11:51:08,44 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:51:08,52 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:52:55,901 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 148.390518s. 230925-11:52:58,116 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:52:58,121 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:52:58,293 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 150.947271s. 230925-11:52:58,572 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.449816s. 230925-11:53:00,112 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:00,117 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:00,122 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:00,124 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:00,376 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.250871s. 230925-11:53:00,585 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.461247s. 230925-11:53:02,110 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:02,111 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:02,111 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:02,123 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:02,132 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:02,133 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:02,426 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.301123s. 230925-11:53:03,966 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 156.608983s. 230925-11:53:03,981 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 156.616424s. 230925-11:53:04,116 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:04,117 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:04,139 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:04,139 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:04,508 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 157.117011s. 230925-11:53:04,909 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 2.7748429999999997s. 230925-11:53:05,235 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 157.787816s. 230925-11:53:05,256 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 157.888591s. 230925-11:53:05,313 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 3.179081s. 230925-11:53:06,152 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:06,156 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:06,158 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:06,158 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:06,159 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:06,165 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:06,166 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:06,166 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:06,168 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:06,169 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:06,620 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.453231s. 230925-11:53:06,662 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.495713s. 230925-11:53:06,666 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.498717s. 230925-11:53:06,684 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.514811s. 230925-11:53:06,689 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.518032s. 230925-11:53:07,20 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 2.879171s. 230925-11:53:07,190 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 3.048452s. 230925-11:53:08,130 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-11:53:08,132 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:08,144 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-11:53:08,145 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:08,408 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.261448s. 230925-11:53:10,145 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:10,159 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:10,424 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.262225s. 230925-11:53:10,471 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 162.982767s. 230925-11:53:12,135 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:12,142 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:12,149 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:12,152 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:12,424 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.26989s. 230925-11:53:12,606 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.455245s. 230925-11:53:14,133 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:14,133 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:14,145 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:14,157 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:14,414 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.267451s. 230925-11:53:14,454 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.295642s. 230925-11:53:16,134 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:16,135 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:16,147 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:16,161 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:16,445 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.296808s. 230925-11:53:16,493 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 168.818239s. 230925-11:53:17,839 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 170.312355s. 230925-11:53:18,140 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:18,146 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:18,147 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:18,151 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:18,152 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:18,169 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:18,620 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.466537s. 230925-11:53:18,624 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.471175s. 230925-11:53:19,539 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 3.3764089999999998s. 230925-11:53:20,137 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:20,139 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:20,143 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:20,151 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:20,153 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:20,166 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:20,441 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.286279s. 230925-11:53:20,465 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.311575s. 230925-11:53:20,717 nipype.workflow INFO: [Node] Finished "register_to_qsiprep", elapsed time 173.382803s. 230925-11:53:21,327 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 3.156124s. 230925-11:53:22,141 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:22,143 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:22,144 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:22,149 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_transform" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_transform". 230925-11:53:22,155 nipype.workflow INFO: [Node] Executing "convert_ants_transform" <qsiprep.interfaces.ants.ConvertTransformFile> 230925-11:53:22,165 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:22,168 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:22,170 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:22,631 nipype.workflow INFO: [Node] Finished "convert_ants_transform", elapsed time 0.474894s. 230925-11:53:23,533 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 3.365194s. 230925-11:53:24,142 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.convert_ants_to_mrtrix_transform" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/convert_ants_to_mrtrix_transform". 230925-11:53:24,142 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:24,161 nipype.workflow INFO: [Node] Executing "convert_ants_to_mrtrix_transform" <qsiprep.interfaces.mrtrix.ITKTransformConvert> 230925-11:53:24,165 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:24,382 nipype.workflow INFO: [Node] Finished "convert_ants_to_mrtrix_transform", elapsed time 0.219868s. 230925-11:53:25,32 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 2.86442s. 230925-11:53:25,189 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 3.017921s. 230925-11:53:25,191 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 3.020881s. 230925-11:53:26,143 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:26,144 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:26,147 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:26,147 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:26,170 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:26,170 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:26,170 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:26,170 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:27,579 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 3.4117129999999998s. 230925-11:53:28,141 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:28,163 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:28,970 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 2.7976900000000002s. 230925-11:53:29,91 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 2.9193160000000002s. 230925-11:53:29,157 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 2.985219s. 230925-11:53:29,605 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 3.432587s. 230925-11:53:30,150 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:30,151 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:30,154 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:30,156 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:30,173 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:30,176 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:30,176 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:30,183 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:30,988 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 2.823161s. 230925-11:53:32,210 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_brain" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_brain". 230925-11:53:32,231 nipype.workflow INFO: [Node] Executing "transform_brain" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:32,960 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 2.785888s. 230925-11:53:33,80 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 2.895415s. 230925-11:53:33,224 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 3.046699s. 230925-11:53:33,622 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 3.444839s. 230925-11:53:34,166 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.register_fs_to_qsiprep_wf.transform_aseg" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/register_fs_to_qsiprep_wf/transform_aseg". 230925-11:53:34,191 nipype.workflow INFO: [Node] Executing "transform_aseg" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-11:53:35,538 nipype.workflow INFO: [Node] Finished "transform_brain", elapsed time 3.30619s. 230925-11:53:37,251 nipype.workflow INFO: [Node] Finished "transform_aseg", elapsed time 3.057905s. 230925-12:11:21,497 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1235.180142s. 230925-12:11:22,910 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-12:11:22,917 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-12:14:06,96 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1377.560981s. 230925-12:14:07,22 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/estimate_fod". 230925-12:14:07,30 nipype.workflow INFO: [Node] Executing "estimate_fod" <qsiprep.interfaces.mrtrix.EstimateFOD> 230925-12:14:30,451 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1422.182152s. 230925-12:14:31,59 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:14:31,65 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:14:36,987 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 5.919975s. 230925-12:14:39,70 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:14:39,77 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:14:45,359 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 6.280047s. 230925-12:14:49,810 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:14:49,817 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:14:55,263 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1444.778857s. 230925-12:14:55,787 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 5.968361s. 230925-12:15:01,261 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:15:01,261 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:15:01,271 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:15:01,289 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:15:08,666 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 7.372597s. 230925-12:15:13,546 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:15:13,558 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:15:48,653 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1482.341813s. 230925-12:15:49,461 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:15:49,468 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:15:56,18 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 6.548036s. 230925-12:15:57,462 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:15:57,472 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:16:21,931 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1533.594125s. 230925-12:16:23,364 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:16:23,391 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:16:29,134 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 5.740748s. 230925-12:16:29,977 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 88.565518s. 230925-12:16:31,374 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:16:31,382 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:16:35,65 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 81.377037s. 230925-12:16:39,250 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1544.751019s. 230925-12:16:42,491 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:16:42,500 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:16:43,112 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:16:43,112 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:16:43,118 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:16:43,121 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:16:48,674 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 5.264209s. 230925-12:16:49,173 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:16:49,181 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:17:07,921 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1561.561935s. 230925-12:17:08,690 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:17:08,696 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:17:12,588 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 74.985193s. 230925-12:17:13,890 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 4.860174s. 230925-12:17:14,707 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:17:14,715 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:17:39,808 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 68.283954s. 230925-12:17:49,629 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 60.312136s. 230925-12:17:51,721 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 68.464117s. 230925-12:17:52,714 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 70.079841s. 230925-12:18:24,868 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 70.01327s. 230925-12:19:26,656 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1578.204364s. 230925-12:19:27,540 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:19:27,546 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:19:32,148 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 4.281969s. 230925-12:19:33,509 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:19:33,522 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:20:32,476 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 58.819245s. 230925-12:22:09,698 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2010.105616s. 230925-12:22:11,201 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:22:11,205 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:22:11,404 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 0.19814s. 230925-12:22:13,212 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-126_mrtrix_multishell_msmt_hsvs.sub_126_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-126_mrtrix_multishell_msmt_hsvs/sub_126_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:22:13,225 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:23:06,336 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2066.868665s. 230925-12:23:07,281 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:23:07,288 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:23:07,535 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 0.245867s. 230925-12:23:08,841 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2069.428417s. 230925-12:23:09,349 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:23:09,356 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:23:09,442 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2069.990044s. 230925-12:23:09,531 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-060_mrtrix_multishell_msmt_hsvs.sub_060_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-060_mrtrix_multishell_msmt_hsvs/sub_060_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:23:09,560 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:23:09,620 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 0.263002s. 230925-12:23:11,434 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:23:11,440 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:23:11,605 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-065_mrtrix_multishell_msmt_hsvs.sub_065_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-065_mrtrix_multishell_msmt_hsvs/sub_065_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:23:11,634 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:23:12,942 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 1.49949s. 230925-12:23:16,985 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2077.695067s. 230925-12:23:17,441 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2077.920218s. 230925-12:23:19,550 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:23:19,550 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:23:19,553 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:23:19,555 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:23:19,760 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 0.206138s. 230925-12:23:19,794 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 0.23847s. 230925-12:23:21,391 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-110_mrtrix_multishell_msmt_hsvs.sub_110_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-110_mrtrix_multishell_msmt_hsvs/sub_110_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:23:21,397 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:23:21,622 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-119_mrtrix_multishell_msmt_hsvs.sub_119_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-119_mrtrix_multishell_msmt_hsvs/sub_119_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:23:21,629 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:23:25,42 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2085.607762s. 230925-12:23:27,404 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:23:27,407 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:23:27,576 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 0.167639s. 230925-12:23:29,428 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-076_mrtrix_multishell_msmt_hsvs.sub_076_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-076_mrtrix_multishell_msmt_hsvs/sub_076_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:23:29,435 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:23:53,700 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2114.275791s. 230925-12:23:55,405 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:23:55,411 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:23:55,705 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 0.292858s. 230925-12:23:57,414 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-165_mrtrix_multishell_msmt_hsvs.sub_165_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-165_mrtrix_multishell_msmt_hsvs/sub_165_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:23:57,420 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:24:01,982 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2122.686362s. 230925-12:24:03,629 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:24:03,632 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:24:05,356 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 1.723214s. 230925-12:24:24,753 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2145.217682s. 230925-12:24:25,669 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:24:25,673 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:24:28,5 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 2.331096s. 230925-12:24:29,436 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:24:29,443 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:27:41,772 nipype.workflow INFO: [Node] Finished "create_5tt_hsvs", elapsed time 2342.349066s. 230925-12:27:43,549 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.anat_ingress_wf.apply_header_to_5tt" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/anat_ingress_wf/apply_header_to_5tt". 230925-12:27:43,553 nipype.workflow INFO: [Node] Executing "apply_header_to_5tt" <qsiprep.interfaces.mrtrix.TransformHeader> 230925-12:27:43,792 nipype.workflow INFO: [Node] Finished "apply_header_to_5tt", elapsed time 0.237558s. 230925-12:27:45,554 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-095_mrtrix_multishell_msmt_hsvs.sub_095_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-095_mrtrix_multishell_msmt_hsvs/sub_095_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:27:45,560 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:28:36,331 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 869.299397s. 230925-12:28:37,396 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:28:37,402 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:28:41,761 nipype.workflow INFO: [Node] Finished "estimate_fod", elapsed time 1038.842539s. 230925-12:28:42,823 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 5.420591s. 230925-12:28:43,377 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/intensity_norm". 230925-12:28:43,377 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:28:43,383 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:28:43,387 nipype.workflow INFO: [Node] Executing "intensity_norm" <qsiprep.interfaces.mrtrix.MTNormalize> 230925-12:28:48,31 nipype.workflow INFO: [Node] Finished "intensity_norm", elapsed time 4.408325s. 230925-12:28:49,386 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.msmt_csd.plot_peaks" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/msmt_csd/plot_peaks". 230925-12:28:49,396 nipype.workflow INFO: [Node] Executing "plot_peaks" <qsiprep.interfaces.reports.CLIReconPeaksReport> 230925-12:29:48,828 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 65.319607s. 230925-12:29:53,626 nipype.workflow INFO: [Node] Finished "plot_peaks", elapsed time 64.106739s. 230925-12:30:06,255 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:30:06,260 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-12:30:06,801 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tractography" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tractography". 230925-12:30:06,808 nipype.workflow INFO: [Node] Executing "tractography" <qsiprep.interfaces.mrtrix.TckGen> 230925-17:18:08,375 nipype.workflow INFO: [Node] Finished "tractography", elapsed time 17281.284378s. 230925-17:18:09,145 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tck_sift2" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tck_sift2". 230925-17:18:09,150 nipype.workflow INFO: [Node] Executing "tck_sift2" <qsiprep.interfaces.mrtrix.SIFT2> 230925-17:32:21,336 nipype.workflow INFO: [Node] Finished "tck_sift2", elapsed time 851.917249s. 230925-17:32:46,980 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.mrtrix_conn.calc_connectivity" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity". 230925-17:32:46,988 nipype.workflow INFO: [Node] Executing "calc_connectivity" <qsiprep.interfaces.mrtrix.MRTrixAtlasGraph> 230925-17:32:47,10 nipype.workflow INFO: Workflow mrtrix_atlasgraph settings: ['check', 'execution', 'logging', 'monitoring'] 230925-17:32:47,22 nipype.workflow INFO: Running in parallel. 230925-17:32:47,26 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:32:49,28 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count 230925-17:32:51,25 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_invnodevol_radius2_count". 230925-17:32:51,29 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_invnodevol_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-17:33:31,987 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_invnodevol_radius2_count", elapsed time 40.66603s. 230925-17:33:33,69 nipype.workflow INFO: [Job 0] Completed (mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count). 230925-17:33:33,71 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:33:35,71 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_meanlength 230925-17:33:37,336 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_meanlength" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_meanlength". 230925-17:33:37,341 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_meanlength" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-17:34:22,520 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_meanlength", elapsed time 44.926671s. 230925-17:34:23,119 nipype.workflow INFO: [Job 1] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_meanlength). 230925-17:34:23,121 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:34:25,121 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_count 230925-17:34:26,963 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_count" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_count". 230925-17:34:26,967 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-17:35:07,107 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_count", elapsed time 39.891143s. 230925-17:35:07,161 nipype.workflow INFO: [Job 2] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_count). 230925-17:35:07,164 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:35:09,163 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_radius2_count 230925-17:35:11,144 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_radius2_count" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_radius2_count". 230925-17:35:11,148 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-17:35:59,491 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_radius2_count", elapsed time 48.058344s. 230925-17:36:01,208 nipype.workflow INFO: [Job 3] Completed (mrtrix_atlasgraph.DMN_atlas_sift_radius2_count). 230925-17:36:01,212 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:36:03,210 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t 230925-17:36:05,330 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_invnodevol_radius2_count_c2t". 230925-17:36:05,334 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_invnodevol_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-17:36:58,872 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_invnodevol_radius2_count_c2t", elapsed time 53.28639s. 230925-17:36:59,257 nipype.workflow INFO: [Job 4] Completed (mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t). 230925-17:36:59,259 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:37:01,260 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t 230925-17:37:03,453 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_meanlength_c2t". 230925-17:37:03,458 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_meanlength_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-17:37:53,441 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_meanlength_c2t", elapsed time 49.724036s. 230925-17:37:55,306 nipype.workflow INFO: [Job 5] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t). 230925-17:37:55,309 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:37:57,309 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t 230925-17:37:59,285 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_count_c2t". 230925-17:37:59,289 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-17:38:51,225 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_count_c2t", elapsed time 51.69695s. 230925-17:38:51,356 nipype.workflow INFO: [Job 6] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t). 230925-17:38:51,358 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:38:53,359 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t 230925-17:38:55,605 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_radius2_count_c2t". 230925-17:38:55,609 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-17:39:44,930 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_radius2_count_c2t", elapsed time 49.075188s. 230925-17:39:45,405 nipype.workflow INFO: [Job 7] Completed (mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t). 230925-17:39:45,407 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:39:45,554 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_mats" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_mats". 230925-17:39:45,556 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_csvs" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_csvs". 230925-17:39:45,558 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_tcks" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_tcks". 230925-17:39:45,558 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_weights" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_weights". 230925-17:39:45,562 nipype.workflow INFO: [Node] Executing "merge_mats" <nipype.interfaces.utility.base.Merge> 230925-17:39:45,562 nipype.workflow INFO: [Node] Executing "merge_csvs" <nipype.interfaces.utility.base.Merge> 230925-17:39:45,563 nipype.workflow INFO: [Node] Finished "merge_mats", elapsed time 0.000351s. 230925-17:39:45,564 nipype.workflow INFO: [Node] Finished "merge_csvs", elapsed time 0.000306s. 230925-17:39:45,564 nipype.workflow INFO: [Node] Executing "merge_weights" <nipype.interfaces.utility.base.Merge> 230925-17:39:45,565 nipype.workflow INFO: [Node] Executing "merge_tcks" <nipype.interfaces.utility.base.Merge> 230925-17:39:45,566 nipype.workflow INFO: [Node] Finished "merge_weights", elapsed time 0.000382s. 230925-17:39:45,567 nipype.workflow INFO: [Node] Finished "merge_tcks", elapsed time 0.000503s. 230925-17:39:47,406 nipype.workflow INFO: [Job 8] Completed (mrtrix_atlasgraph.merge_mats). 230925-17:39:47,408 nipype.workflow INFO: [Job 9] Completed (mrtrix_atlasgraph.merge_csvs). 230925-17:39:47,409 nipype.workflow INFO: [Job 10] Completed (mrtrix_atlasgraph.merge_tcks). 230925-17:39:47,410 nipype.workflow INFO: [Job 11] Completed (mrtrix_atlasgraph.merge_weights). 230925-17:39:47,412 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:39:47,557 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_exemplars" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_exemplars". 230925-17:39:47,562 nipype.workflow INFO: [Node] Executing "merge_exemplars" <nipype.interfaces.utility.base.Merge> 230925-17:39:47,563 nipype.workflow INFO: [Node] Finished "merge_exemplars", elapsed time 0.000317s. 230925-17:39:49,408 nipype.workflow INFO: [Job 12] Completed (mrtrix_atlasgraph.merge_exemplars). 230925-17:39:49,411 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:39:49,612 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.compress_exemplars" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/compress_exemplars". 230925-17:39:49,617 nipype.workflow INFO: [Node] Executing "compress_exemplars" <qsiprep.interfaces.mrtrix.CompressConnectome2Tck> 230925-17:39:49,621 nipype.workflow INFO: [Node] Finished "compress_exemplars", elapsed time 0.003616s. 230925-17:39:51,411 nipype.workflow INFO: [Job 13] Completed (mrtrix_atlasgraph.compress_exemplars). 230925-17:39:51,413 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-17:39:53,470 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.compress_exemplars" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/compress_exemplars". 230925-17:39:53,473 nipype.workflow INFO: [Node] Cached "mrtrix_atlasgraph.compress_exemplars" - collecting precomputed outputs 230925-17:39:53,474 nipype.workflow INFO: [Node] "mrtrix_atlasgraph.compress_exemplars" found cached. 230925-17:39:53,475 nipype.workflow INFO: [Node] Finished "calc_connectivity", elapsed time 426.486096s. 230925-17:39:55,630 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-175_mrtrix_multishell_msmt_hsvs.sub_175_dir_PA_space_T1w_desc_preproc_recon_wf.mrtrix_conn.plot_connectivity" in "/scratch/qsirecon_wf/sub-175_mrtrix_multishell_msmt_hsvs/sub_175_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/plot_connectivity". 230925-17:39:55,634 nipype.workflow INFO: [Node] Executing "plot_connectivity" <qsiprep.interfaces.reports.ConnectivityReport> 230925-17:39:55,804 nipype.workflow INFO: [Node] Finished "plot_connectivity", elapsed time 0.168661s. 230925-17:51:36,507 nipype.workflow INFO: [Node] Finished "tractography", elapsed time 19626.816865s. 230925-17:51:38,221 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tck_sift2" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tck_sift2". 230925-17:51:38,226 nipype.workflow INFO: [Node] Executing "tck_sift2" <qsiprep.interfaces.mrtrix.SIFT2> 230925-18:05:34,87 nipype.workflow INFO: [Node] Finished "tck_sift2", elapsed time 835.557859s. 230925-18:05:35,871 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.mrtrix_conn.calc_connectivity" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity". 230925-18:05:35,879 nipype.workflow INFO: [Node] Executing "calc_connectivity" <qsiprep.interfaces.mrtrix.MRTrixAtlasGraph> 230925-18:05:35,897 nipype.workflow INFO: Workflow mrtrix_atlasgraph settings: ['check', 'execution', 'logging', 'monitoring'] 230925-18:05:35,908 nipype.workflow INFO: Running in parallel. 230925-18:05:35,911 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:05:37,912 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count 230925-18:05:39,944 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_invnodevol_radius2_count". 230925-18:05:39,947 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_invnodevol_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-18:06:28,652 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_invnodevol_radius2_count", elapsed time 48.381845s. 230925-18:06:29,962 nipype.workflow INFO: [Job 0] Completed (mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count). 230925-18:06:29,964 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:06:31,965 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_meanlength 230925-18:06:33,779 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_meanlength" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_meanlength". 230925-18:06:33,783 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_meanlength" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-18:07:21,649 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_meanlength", elapsed time 47.628787s. 230925-18:07:22,10 nipype.workflow INFO: [Job 1] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_meanlength). 230925-18:07:22,12 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:07:24,13 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_count 230925-18:07:25,808 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_count" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_count". 230925-18:07:25,812 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-18:08:05,513 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_count", elapsed time 39.454662s. 230925-18:08:06,49 nipype.workflow INFO: [Job 2] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_count). 230925-18:08:06,51 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:08:08,51 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_radius2_count 230925-18:08:10,261 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_radius2_count" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_radius2_count". 230925-18:08:10,265 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-18:08:57,487 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_radius2_count", elapsed time 46.953051s. 230925-18:08:58,95 nipype.workflow INFO: [Job 3] Completed (mrtrix_atlasgraph.DMN_atlas_sift_radius2_count). 230925-18:08:58,96 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:09:00,97 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t 230925-18:09:01,862 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_invnodevol_radius2_count_c2t". 230925-18:09:01,866 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_invnodevol_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-18:09:50,899 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_invnodevol_radius2_count_c2t", elapsed time 48.787178s. 230925-18:09:52,146 nipype.workflow INFO: [Job 4] Completed (mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t). 230925-18:09:52,149 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:09:54,149 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t 230925-18:09:56,29 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_meanlength_c2t". 230925-18:09:56,33 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_meanlength_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-18:10:36,659 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_meanlength_c2t", elapsed time 40.355579s. 230925-18:10:38,190 nipype.workflow INFO: [Job 5] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t). 230925-18:10:38,192 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:10:40,193 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t 230925-18:10:41,902 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_count_c2t". 230925-18:10:41,905 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-18:11:31,144 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_count_c2t", elapsed time 48.969967s. 230925-18:11:32,237 nipype.workflow INFO: [Job 6] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t). 230925-18:11:32,239 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:11:34,239 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t 230925-18:11:35,942 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_radius2_count_c2t". 230925-18:11:35,946 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-18:12:24,208 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_radius2_count_c2t", elapsed time 48.003733s. 230925-18:12:24,285 nipype.workflow INFO: [Job 7] Completed (mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t). 230925-18:12:24,286 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:12:24,424 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_mats" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_mats". 230925-18:12:24,424 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_csvs" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_csvs". 230925-18:12:24,425 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_tcks" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_tcks". 230925-18:12:24,426 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_weights" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_weights". 230925-18:12:24,430 nipype.workflow INFO: [Node] Executing "merge_tcks" <nipype.interfaces.utility.base.Merge> 230925-18:12:24,430 nipype.workflow INFO: [Node] Executing "merge_csvs" <nipype.interfaces.utility.base.Merge> 230925-18:12:24,431 nipype.workflow INFO: [Node] Executing "merge_mats" <nipype.interfaces.utility.base.Merge> 230925-18:12:24,431 nipype.workflow INFO: [Node] Finished "merge_tcks", elapsed time 0.000314s. 230925-18:12:24,432 nipype.workflow INFO: [Node] Finished "merge_csvs", elapsed time 0.0003s. 230925-18:12:24,432 nipype.workflow INFO: [Node] Executing "merge_weights" <nipype.interfaces.utility.base.Merge> 230925-18:12:24,433 nipype.workflow INFO: [Node] Finished "merge_mats", elapsed time 0.0003s. 230925-18:12:24,433 nipype.workflow INFO: [Node] Finished "merge_weights", elapsed time 0.000315s. 230925-18:12:26,286 nipype.workflow INFO: [Job 8] Completed (mrtrix_atlasgraph.merge_mats). 230925-18:12:26,287 nipype.workflow INFO: [Job 9] Completed (mrtrix_atlasgraph.merge_csvs). 230925-18:12:26,288 nipype.workflow INFO: [Job 10] Completed (mrtrix_atlasgraph.merge_tcks). 230925-18:12:26,289 nipype.workflow INFO: [Job 11] Completed (mrtrix_atlasgraph.merge_weights). 230925-18:12:26,290 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:12:26,428 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_exemplars" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_exemplars". 230925-18:12:26,438 nipype.workflow INFO: [Node] Executing "merge_exemplars" <nipype.interfaces.utility.base.Merge> 230925-18:12:26,439 nipype.workflow INFO: [Node] Finished "merge_exemplars", elapsed time 0.000361s. 230925-18:12:28,288 nipype.workflow INFO: [Job 12] Completed (mrtrix_atlasgraph.merge_exemplars). 230925-18:12:28,290 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:12:28,465 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.compress_exemplars" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/compress_exemplars". 230925-18:12:28,471 nipype.workflow INFO: [Node] Executing "compress_exemplars" <qsiprep.interfaces.mrtrix.CompressConnectome2Tck> 230925-18:12:28,476 nipype.workflow INFO: [Node] Finished "compress_exemplars", elapsed time 0.00404s. 230925-18:12:30,291 nipype.workflow INFO: [Job 13] Completed (mrtrix_atlasgraph.compress_exemplars). 230925-18:12:30,292 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:12:32,358 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.compress_exemplars" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/compress_exemplars". 230925-18:12:32,361 nipype.workflow INFO: [Node] Cached "mrtrix_atlasgraph.compress_exemplars" - collecting precomputed outputs 230925-18:12:32,361 nipype.workflow INFO: [Node] "mrtrix_atlasgraph.compress_exemplars" found cached. 230925-18:12:32,362 nipype.workflow INFO: [Node] Finished "calc_connectivity", elapsed time 416.482609s. 230925-18:12:33,790 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-173_mrtrix_multishell_msmt_hsvs.sub_173_dir_PA_space_T1w_desc_preproc_recon_wf.mrtrix_conn.plot_connectivity" in "/scratch/qsirecon_wf/sub-173_mrtrix_multishell_msmt_hsvs/sub_173_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/plot_connectivity". 230925-18:12:33,794 nipype.workflow INFO: [Node] Executing "plot_connectivity" <qsiprep.interfaces.reports.ConnectivityReport> 230925-18:12:33,952 nipype.workflow INFO: [Node] Finished "plot_connectivity", elapsed time 0.157007s. 230925-18:13:19,38 nipype.workflow INFO: [Node] Finished "tractography", elapsed time 20592.480284s. 230925-18:13:19,773 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.track_ifod2.tck_sift2" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/track_ifod2/tck_sift2". 230925-18:13:19,778 nipype.workflow INFO: [Node] Executing "tck_sift2" <qsiprep.interfaces.mrtrix.SIFT2> 230925-18:28:06,590 nipype.workflow INFO: [Node] Finished "tck_sift2", elapsed time 886.810586s. 230925-18:28:09,182 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.mrtrix_conn.calc_connectivity" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity". 230925-18:28:09,190 nipype.workflow INFO: [Node] Executing "calc_connectivity" <qsiprep.interfaces.mrtrix.MRTrixAtlasGraph> 230925-18:28:09,212 nipype.workflow INFO: Workflow mrtrix_atlasgraph settings: ['check', 'execution', 'logging', 'monitoring'] 230925-18:28:09,223 nipype.workflow INFO: Running in parallel. 230925-18:28:09,229 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:28:11,230 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count 230925-18:28:13,225 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_invnodevol_radius2_count". 230925-18:28:13,228 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_invnodevol_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-18:28:59,127 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_invnodevol_radius2_count", elapsed time 45.642716s. 230925-18:28:59,277 nipype.workflow INFO: [Job 0] Completed (mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count). 230925-18:28:59,278 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:29:01,279 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_meanlength 230925-18:29:02,855 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_meanlength" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_meanlength". 230925-18:29:02,859 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_meanlength" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-18:29:42,264 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_meanlength", elapsed time 39.129385s. 230925-18:29:43,320 nipype.workflow INFO: [Job 1] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_meanlength). 230925-18:29:43,322 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:29:45,322 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_count 230925-18:29:46,773 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_count" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_count". 230925-18:29:46,782 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-18:30:25,244 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_count", elapsed time 38.163786s. 230925-18:30:25,358 nipype.workflow INFO: [Job 2] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_count). 230925-18:30:25,360 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:30:27,361 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_radius2_count 230925-18:30:28,946 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_radius2_count" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_radius2_count". 230925-18:30:28,950 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_radius2_count" <qsiprep.interfaces.mrtrix.BuildConnectome> 230925-18:31:14,267 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_radius2_count", elapsed time 45.076858s. 230925-18:31:15,409 nipype.workflow INFO: [Job 3] Completed (mrtrix_atlasgraph.DMN_atlas_sift_radius2_count). 230925-18:31:15,410 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:31:17,411 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t 230925-18:31:18,846 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_invnodevol_radius2_count_c2t". 230925-18:31:18,853 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_invnodevol_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-18:32:05,989 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_invnodevol_radius2_count_c2t", elapsed time 46.83464s. 230925-18:32:07,460 nipype.workflow INFO: [Job 4] Completed (mrtrix_atlasgraph.DMN_atlas_sift_invnodevol_radius2_count_c2t). 230925-18:32:07,462 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:32:09,463 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t 230925-18:32:10,972 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_meanlength_c2t". 230925-18:32:10,979 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_meanlength_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-18:32:56,866 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_meanlength_c2t", elapsed time 45.662735s. 230925-18:32:57,510 nipype.workflow INFO: [Job 5] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_meanlength_c2t). 230925-18:32:57,512 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:32:59,511 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t 230925-18:33:01,6 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_radius2_count_c2t". 230925-18:33:01,10 nipype.workflow INFO: [Node] Executing "DMN_atlas_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-18:33:47,892 nipype.workflow INFO: [Node] Finished "DMN_atlas_radius2_count_c2t", elapsed time 46.588806s. 230925-18:33:49,555 nipype.workflow INFO: [Job 6] Completed (mrtrix_atlasgraph.DMN_atlas_radius2_count_c2t). 230925-18:33:49,556 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:33:51,557 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 905.68/905.88, Free processors: 0/8. Currently running: * mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t 230925-18:33:53,121 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/DMN_atlas_sift_radius2_count_c2t". 230925-18:33:53,125 nipype.workflow INFO: [Node] Executing "DMN_atlas_sift_radius2_count_c2t" <qsiprep.interfaces.mrtrix.Connectome2Tck> 230925-18:34:41,870 nipype.workflow INFO: [Node] Finished "DMN_atlas_sift_radius2_count_c2t", elapsed time 48.45208s. 230925-18:34:43,605 nipype.workflow INFO: [Job 7] Completed (mrtrix_atlasgraph.DMN_atlas_sift_radius2_count_c2t). 230925-18:34:43,607 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:34:43,748 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_mats" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_mats". 230925-18:34:43,748 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_csvs" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_csvs". 230925-18:34:43,748 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_tcks" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_tcks". 230925-18:34:43,749 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_weights" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_weights". 230925-18:34:43,754 nipype.workflow INFO: [Node] Executing "merge_tcks" <nipype.interfaces.utility.base.Merge> 230925-18:34:43,754 nipype.workflow INFO: [Node] Executing "merge_mats" <nipype.interfaces.utility.base.Merge> 230925-18:34:43,754 nipype.workflow INFO: [Node] Executing "merge_weights" <nipype.interfaces.utility.base.Merge> 230925-18:34:43,755 nipype.workflow INFO: [Node] Finished "merge_tcks", elapsed time 0.000313s. 230925-18:34:43,755 nipype.workflow INFO: [Node] Finished "merge_weights", elapsed time 0.000292s. 230925-18:34:43,755 nipype.workflow INFO: [Node] Finished "merge_mats", elapsed time 0.000325s. 230925-18:34:43,763 nipype.workflow INFO: [Node] Executing "merge_csvs" <nipype.interfaces.utility.base.Merge> 230925-18:34:43,765 nipype.workflow INFO: [Node] Finished "merge_csvs", elapsed time 0.000381s. 230925-18:34:45,607 nipype.workflow INFO: [Job 8] Completed (mrtrix_atlasgraph.merge_mats). 230925-18:34:45,608 nipype.workflow INFO: [Job 9] Completed (mrtrix_atlasgraph.merge_csvs). 230925-18:34:45,609 nipype.workflow INFO: [Job 10] Completed (mrtrix_atlasgraph.merge_tcks). 230925-18:34:45,610 nipype.workflow INFO: [Job 11] Completed (mrtrix_atlasgraph.merge_weights). 230925-18:34:45,611 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:34:45,751 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.merge_exemplars" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/merge_exemplars". 230925-18:34:45,756 nipype.workflow INFO: [Node] Executing "merge_exemplars" <nipype.interfaces.utility.base.Merge> 230925-18:34:45,758 nipype.workflow INFO: [Node] Finished "merge_exemplars", elapsed time 0.000321s. 230925-18:34:47,608 nipype.workflow INFO: [Job 12] Completed (mrtrix_atlasgraph.merge_exemplars). 230925-18:34:47,610 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:34:47,750 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.compress_exemplars" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/compress_exemplars". 230925-18:34:47,771 nipype.workflow INFO: [Node] Executing "compress_exemplars" <qsiprep.interfaces.mrtrix.CompressConnectome2Tck> 230925-18:34:47,779 nipype.workflow INFO: [Node] Finished "compress_exemplars", elapsed time 0.004574s. 230925-18:34:49,610 nipype.workflow INFO: [Job 13] Completed (mrtrix_atlasgraph.compress_exemplars). 230925-18:34:49,612 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 905.88/905.88, Free processors: 8/8. 230925-18:34:51,669 nipype.workflow INFO: [Node] Setting-up "mrtrix_atlasgraph.compress_exemplars" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/calc_connectivity/mrtrix_atlasgraph/compress_exemplars". 230925-18:34:51,671 nipype.workflow INFO: [Node] Cached "mrtrix_atlasgraph.compress_exemplars" - collecting precomputed outputs 230925-18:34:51,672 nipype.workflow INFO: [Node] "mrtrix_atlasgraph.compress_exemplars" found cached. 230925-18:34:51,673 nipype.workflow INFO: [Node] Finished "calc_connectivity", elapsed time 402.481193s. 230925-18:34:53,47 nipype.workflow INFO: [Node] Setting-up "qsirecon_wf.sub-174_mrtrix_multishell_msmt_hsvs.sub_174_dir_PA_space_T1w_desc_preproc_recon_wf.mrtrix_conn.plot_connectivity" in "/scratch/qsirecon_wf/sub-174_mrtrix_multishell_msmt_hsvs/sub_174_dir_PA_space_T1w_desc_preproc_recon_wf/mrtrix_conn/plot_connectivity". 230925-18:34:53,53 nipype.workflow INFO: [Node] Executing "plot_connectivity" <qsiprep.interfaces.reports.ConnectivityReport> 230925-18:34:53,195 nipype.workflow INFO: [Node] Finished "plot_connectivity", elapsed time 0.141533s.