RUNNING: applywarp -i /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/standard-dseg-1.5mm.nii.gz -r /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func_brainmask.nii.gz -w /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/reg/func-mcdc_to_standard/func-mcdc_to_standard_invwarp.nii.gz -o /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_dseg.nii.gz --interp=nn RUNNING: fslmaths /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func.nii.gz -Tmean /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_tmean.nii.gz RUNNING: fslmaths /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func.nii.gz -Tstd /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_tstd.nii.gz RUNNING: fslmaths /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_tmean.nii.gz -div /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_tstd.nii.gz -nan /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_tsnr.nii.gz RUNNING: fslstats /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_tsnr.nii.gz -k /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func_brainmask.nii.gz -M -S -P 1 -P 5 -P 50 -P 95 -P 99 RUNNING: applywarp -i /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_tsnr.nii.gz -o /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_standard_tsnr.nii.gz -r /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/standard-1.5mm.nii.gz -w /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/reg/func-mcdc_to_standard/func-mcdc_to_standard_warp.nii.gz --interp=spline RUNNING: applywarp -i /home/johann.drayne/dhcpfmri/data/group_maps.nii.gz -o /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/tmpkmepy1sl/template_native.nii.gz -r /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func_brainmask.nii.gz -w /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/reg/func-mcdc_to_standard/func-mcdc_to_standard_invwarp.nii.gz --interp=spline RUNNING: fsl_glm -i /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func.nii.gz -d /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/tmpkmepy1sl/template_native.nii.gz -o /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_dr1.txt --demean -m /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func_brainmask.nii.gz --out_res=/home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/tmpkmepy1sl/dr_stage1_noise.nii.gz RUNNING: fsl_glm -i /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func.nii.gz -d /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_dr1.txt -o /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_dr2.nii.gz --demean -m /home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/import/func_brainmask.nii.gz --des_norm Error during MISCMATHS::pinv using dc, attempting once more with std. pinv(): svd failed Traceback (most recent call last): File "/home/johann.drayne/.local/lib/python3.8/site-packages/nibabel/loadsave.py", line 42, in load stat_result = os.stat(filename) FileNotFoundError: [Errno 2] No such file or directory: '/home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_dr2.nii.gz' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "solo-fix.py", line 452, in p.qc() File "/home/johann.drayne/.local/lib/python3.8/site-packages/dhcp/func/pipeline.py", line 716, in qc qc.add_func( File "/home/johann.drayne/.local/lib/python3.8/site-packages/dhcp/func/qc.py", line 332, in add_func dr, dr_stats = metrics.dr( File "/home/johann.drayne/.local/lib/python3.8/site-packages/dhcp/util/qc/metrics.py", line 119, in dr dr2 = nb.load(ft.get('dr2')) File "/home/johann.drayne/.local/lib/python3.8/site-packages/nibabel/loadsave.py", line 44, in load raise FileNotFoundError(f"No such file or no access: '{filename}'") FileNotFoundError: No such file or no access: '/home/johann.drayne/fmridhcpnew/output/sub-MS040053/ses-session1/qc/raw_dr2.nii.gz'