Node: fmriprep_wf.single_subject_J1121053_wf.func_preproc_task_motor_run_3_wf.bold_reg_wf.bbreg_wf.mri_coreg Working directory: /tmp/work/fmriprep_wf/single_subject_J1121053_wf/func_preproc_task_motor_run_3_wf/bold_reg_wf/bbreg_wf/mri_coreg Node inputs: args = brute_force_limit = brute_force_samples = compress_report = auto conform_reference = dof = 6 environ = {'SUBJECTS_DIR': '/opt/freesurfer/subjects'} ftol = 0.0001 initial_rotation = initial_scale = initial_shear = initial_translation = linmintol = 0.01 max_iters = no_brute_force = no_coord_dithering = no_cras0 = no_intensity_dithering = no_smooth = num_threads = 3 out_lta_file = True out_params_file = out_reg_file = out_report = report.svg ref_fwhm = reference_file = reference_mask = saturation_threshold = sep = [4] source_file = source_mask = source_oob = subject_id = subjects_dir = /opt/freesurfer/subjects Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node result["result"] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/freesurfer/base.py", line 149, in run return super(FSCommand, self).run(**inputs) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 429, in run runtime = self._post_run_hook(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/freesurfer.py", line 230, in _post_run_hook runtime = super(TruncateLTA, self)._post_run_hook(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/registration.py", line 331, in _post_run_hook return super(MRICoregRPT, self)._post_run_hook(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/mixins/reporting.py", line 50, in _post_run_hook self._generate_report() File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/report_base.py", line 47, in _generate_report contour_nii = load_img(self._contour) if self._contour is not None else None File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/image.py", line 1063, in load_img return check_niimg(img, wildcards=wildcards, dtype=dtype) File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/_utils/niimg_conversions.py", line 263, in check_niimg niimg = load_niimg(niimg, dtype=dtype) File "/usr/local/miniconda/lib/python3.7/site-packages/nilearn/_utils/niimg.py", line 121, in load_niimg niimg = nibabel.load(niimg) File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/loadsave.py", line 52, in load img = image_klass.from_filename(filename, **kwargs) File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/dataobj_images.py", line 489, in from_filename keep_file_open=keep_file_open) File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 575, in from_file_map header = klass.header_class.from_fileobj(mghf) File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/freesurfer/mghformat.py", line 170, in from_fileobj np.prod(hdr_str_to_np['dims'])) File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/openers.py", line 168, in seek return self.fobj.seek(*args, **kwargs) File "indexed_gzip/indexed_gzip.pyx", line 635, in indexed_gzip.indexed_gzip._IndexedGzipFile.seek indexed_gzip.indexed_gzip.CrcError: CRC/size validation failed - the GZIP data might be corrupt