Feat main script
/bin/cp /project/oathes_analysis2/R61/fsl_feat/P896_feat.fsf design.fsf
/appl/fsl-6.0.3/bin/feat_model design
mkdir .files;cp /appl/fsl-6.0.3/doc/fsl.css .files;cp -r /appl/fsl-6.0.3/doc/images .files/images
/appl/fsl-6.0.3/bin/fsl_sub -T 10 -l logs -N feat0_init /appl/fsl-6.0.3/bin/feat /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat/design.fsf -D /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat -I 1 -init
262671
/appl/fsl-6.0.3/bin/fsl_sub -T 30 -l logs -N feat2_pre -j 262671 /appl/fsl-6.0.3/bin/feat /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat/design.fsf -D /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat -I 1 -prestats
266848
/appl/fsl-6.0.3/bin/fsl_sub -T 95563 -l logs -N feat3_film -j 266848 /appl/fsl-6.0.3/bin/feat /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat/design.fsf -D /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat -I 1 -stats
274744
/appl/fsl-6.0.3/bin/fsl_sub -T 119 -l logs -N feat4_post -j 274744 /appl/fsl-6.0.3/bin/feat /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat/design.fsf -D /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat -poststats 0
child process exited abnormally
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr arginde..."
(file "/appl/fsl-6.0.3/bin/feat" line 312)
FATAL ERROR ENCOUNTERED:
COMMAND:
/appl/fsl-6.0.3/bin/fsl_sub -T 119 -l logs -N feat4_post -j 274744 /appl/fsl-6.0.3/bin/feat /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat/design.fsf -D /project/oathes_analysis2/R61/fsl_feat/P896++++++.feat -poststats 0
ERROR MESSAGE:
child process exited abnormally
END OF ERROR MESSAGE
/appl/fsl-6.0.3/bin/fslmaths /project/oathes_analysis2/R61/xcp_d/xcp_d/sub-P896/ses-baseline/func/sub-P896_ses-baseline_task-rest_dir-AP_space-T1w_desc-denoised_bold prefiltered_func_data -odt float Total original volumes = 621 /appl/fsl-6.0.3/bin/fslroi prefiltered_func_data example_func 310 1
/appl/fsl-6.0.3/bin/fslmaths prefiltered_func_data filtered_func_data
/appl/fsl-6.0.3/bin/fslmaths filtered_func_data -Tmin -bin mask -odt char
/appl/fsl-6.0.3/bin/fslstats filtered_func_data -k mask -R | awk '{ print }' -
calculateExtrema: mask is empty
calculateExtrema: mask is empty
0.000000
/appl/fsl-6.0.3/bin/fslmaths filtered_func_data -Tmean mean_func
/bin/rm -rf prefiltered_func_data*
Error: FILM did not complete - it probably ran out of memory
mkdir -p custom_timing_files ; /appl/fsl-6.0.3/bin/fslFixText /project/oathes_analysis2/R61/xcp_d/xcp_d/sub-P896/ses-baseline/func/sub-P896_sgACC_fsl.txt custom_timing_files/ev1.txt /appl/fsl-6.0.3/bin/film_gls --in=filtered_func_data --rn=stats --pd=design.mat --thr=0.000000 --noest --con=design.con Log directory is: stats paradigm.getDesignMatrix().Nrows()=621 paradigm.getDesignMatrix().Ncols()=1 sizeTS=621 numTS=0 Completed Prewhitening and Computing PEs... Percentage done: Completed Saving results... Completed
/appl/fsl-6.0.3/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
/appl/fsl-6.0.3/bin/smoothest -m mask -z stats/zstat1 > stats/zstat1.smoothness
WARNING: Extreme smoothness detected in X - possibly biased global estimate.
WARNING: Extreme smoothness detected in Y - possibly biased global estimate.
WARNING: Extreme smoothness detected in Z - possibly biased global estimate.
echo 0 > thresh_zstat1.vol
zstat1: DLH=nan VOLUME=0 RESELS=nan
/appl/fsl-6.0.3/bin/cluster -i thresh_zstat1 -t 3.1 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --olmax=lmax_zstat1.txt --scalarname=Z -p 0.05 -d nan --volume=0 > cluster_zstat1.txt
/appl/fsl-6.0.3/bin/cluster2html . cluster_zstat1
/appl/fsl-6.0.3/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
0.000000 0.000000
Rendering using zmin=2.3 zmax=8
/appl/fsl-6.0.3/bin/overlay 1 0 example_func -a thresh_zstat1 2.3 8 rendered_thresh_zstat1
/appl/fsl-6.0.3/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
/bin/cp /appl/fsl-6.0.3/etc/luts/ramp.gif .ramp.gif
mkdir -p tsplot ; /appl/fsl-6.0.3/bin/tsplot . -f filtered_func_data -o tsplot
Image Exception : #63 :: No image files match: ./stats/pe1
Image Exception : #22 :: Failed to read volume ./stats/pe1
Error : No image files match: ./stats/pe1
terminate called after throwing an instance of 'std::runtime_error'
what(): Failed to read volume ./stats/pe1
Error : No image files match: ./stats/pe1
sh: line 1: 277942 Aborted (core dumped) /appl/fsl-6.0.3/bin/tsplot . -f filtered_func_data -o tsplot
FATAL ERROR ENCOUNTERED:
COMMAND:
mkdir -p tsplot ; /appl/fsl-6.0.3/bin/tsplot . -f filtered_func_data -o tsplot
ERROR MESSAGE:
child process exited abnormally
END OF ERROR MESSAGE
child process exited abnormally
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr arginde..."
(file "/appl/fsl-6.0.3/bin/feat" line 312)
Error encountered while running in main feat script, halting.
child process exited abnormally