-------- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /share/apps/freesurfer/6.0.0-make-fix FSFAST_HOME /share/apps/freesurfer/6.0.0-make-fix/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /share/apps/freesurfer/6.0.0-make-fix/subjects MNI_DIR /share/apps/freesurfer/6.0.0-make-fix/mni FSL_DIR /share/apps/fsl/5.0.11/source/fsl /data/picsl/mackey_group/tools/CBIG/setup/CBIG_generic_setup.sh: line 164: wb_command: command not found ~~~~~~~~~~~~~ ~~~~ Run MRIQC ~~~~~~ ~~~~~~~~~~~~~ Running MRIQC with 1 mm FD threshold for CBPD0201 session 01 MRIQC already run with 1 mm threshold for CBPD0201 session 01 Finished MRIQC with 1 mm FD threshold for CBPD0201 session 01 ~~~~~~~~~~~~~ ~~~~ Collate MRIQC group output ~~~~~~ ~~~~~~~~~~~~~ Adding CBPD0201 session 01 to MRIQC group files 2020-03-10 17:36:10,753 mriqc:IMPORTANT Running MRIQC version 0.15.1: * BIDS dataset path: /mnt. * Output folder: /mnt/derivatives/mriqc_fd_1_mm. * Analysis levels: group. Finished adding CBPD0201 session 01 to MRIQC group files ~~~~~~~~~~~~~ ~~~~ Freesurfer with hippocampal subfields, selected T1 ~~~~~~ ~~~~~~~~~~~~~ Running Freesurfer with hipp subfields for CBPD0201 session 01 Freesurfer is already run for CBPD0201 session 01 Finished running Freesurfer with hipp subfields for CBPD0201 session 01 ~~~~~~~~~~~~~ ~~~~ Freesurfer on experimental T1s ~~~~~~ ~~~~~~~~~~~~~ No CSMPRAGE_1mm_acc42 for CBPD0201 session 01 exists There is a CSMPRAGE_1mm_acc5 for CBPD0201 session 01 Freesurfer was already started for CSMPRAGE_1mm_acc5 for CBPD0201 session 01 ~~~~~~~~~~~~~ ~~~~ Run fMRIprep ~~~~~~ ~~~~~~~~~~~~~ Running fMRIprep for CBPD0201 session 01 CBPD0201 /data/picsl/mackey_group/CBPD/CBPD_bids bids-validator@1.4.0 This dataset appears to be BIDS compatible. Summary: Available Tasks: Available Modalities: 3556 Files, 88.41GB rest T1w 151 - Subjects piper T2w 3 - Sessions nback dwi number bold TODO: full task name for nback events TODO: full task name for number sbref TODO: full task name for piper fieldmap TODO: full task name for rest  If you have any questions, please post on https://neurostars.org/tags/bids. Making sure the input data is BIDS compliant (warnings can be ignored in most cases). 200310-17:38:56,841 nipype.workflow IMPORTANT: Running fMRIPREP version 20.0.2: * BIDS dataset path: /mnt. * Participant list: ['CBPD0201']. * Run identifier: 20200310-173634_0e05bcfc-5673-4522-9858-d73dced05e3d. Spatial References: - Reference(space='MNI152NLin6Asym', spec={}) - Reference(space='T1w', spec={}) - Reference(space='MNIPediatricAsym', spec={'res': '1', 'cohort': '2'}) 200310-17:38:57,487 nipype.utils INFO: No new version available. 200310-17:39:03,898 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-CBPD0201/ses-01/func/sub-CBPD0201_ses-01_task-piper_run-01_bold.nii.gz" (0.15 GB / 152 TRs). Memory resampled/largemem=0.62/0.85 GB. 200310-17:39:04,177 nipype.workflow INFO: Single-band reference files ignored. 200310-17:39:07,279 nipype.workflow IMPORTANT: Slice-timing correction will be included. 200310-17:39:11,749 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-CBPD0201/ses-01/func/sub-CBPD0201_ses-01_task-rest_run-01_bold.nii.gz" (0.16 GB / 156 TRs). Memory resampled/largemem=0.63/0.88 GB. 200310-17:39:12,29 nipype.workflow INFO: Single-band reference files ignored. 200310-17:39:14,801 nipype.workflow IMPORTANT: Slice-timing correction will be included. 200310-17:39:19,293 nipype.workflow IMPORTANT: Creating bold processing workflow for "/mnt/sub-CBPD0201/ses-01/func/sub-CBPD0201_ses-01_task-rest_run-02_bold.nii.gz" (0.22 GB / 213 TRs). Memory resampled/largemem=0.87/1.33 GB. 200310-17:39:19,566 nipype.workflow INFO: Single-band reference files ignored. 200310-17:39:22,338 nipype.workflow IMPORTANT: Slice-timing correction will be included. 200310-17:39:30,763 nipype.workflow IMPORTANT: Works derived from this fMRIPrep execution should include the following boilerplate: Results included in this manuscript come from preprocessing performed using *fMRIPrep* 20.0.2 (@fmriprep1; @fmriprep2; RRID:SCR_016216), which is based on *Nipype* 1.4.2 (@nipype1; @nipype2; RRID:SCR_002502). Anatomical data preprocessing : The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU) with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.2.0 [@ants, RRID:SCR_004757], and used as T1w-reference throughout the workflow. The T1w-reference was then skull-stripped with a *Nipype* implementation of the `antsBrainExtraction.sh` workflow (from ANTs), using OASIS30ANTs as target template. Brain tissue segmentation of cerebrospinal fluid (CSF), white-matter (WM) and gray-matter (GM) was performed on the brain-extracted T1w using `fast` [FSL 5.0.9, RRID:SCR_002823, @fsl_fast]. Brain surfaces were reconstructed using `recon-all` [FreeSurfer 6.0.1, RRID:SCR_001847, @fs_reconall], and the brain mask estimated previously was refined with a custom variation of the method to reconcile ANTs-derived and FreeSurfer-derived segmentations of the cortical gray-matter of Mindboggle [RRID:SCR_002438, @mindboggle]. Volume-based spatial normalization to three standard spaces (MNI152NLin6Asym, MNIPediatricAsym:cohort-2, MNI152NLin2009cAsym) was performed through nonlinear registration with `antsRegistration` (ANTs 2.2.0), using brain-extracted versions of both T1w reference and the T1w template. The following templates were selected for spatial normalization: *FSL's MNI ICBM 152 non-linear 6th Generation Asymmetric Average Brain Stereotaxic Registration Model* [@mni152nlin6asym, RRID:SCR_002823; TemplateFlow ID: MNI152NLin6Asym], *MNI's unbiased standard MRI template for pediatric data from the 4.5 to 18.5y age range* [@mnipediatricasym, RRID:SCR_008796; TemplateFlow ID: MNIPediatricAsym:cohort-2], *ICBM 152 Nonlinear Asymmetrical template version 2009c* [@mni152nlin2009casym, RRID:SCR_008796; TemplateFlow ID: MNI152NLin2009cAsym], Functional data preprocessing : For each of the 3 BOLD runs found per subject (across all tasks and sessions), the following preprocessing was performed. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. Susceptibility distortion correction (SDC) was omitted. The BOLD reference was then co-registered to the T1w reference using `bbregister` (FreeSurfer) which implements boundary-based registration [@bbr]. Co-registration was configured with six degrees of freedom. Head-motion parameters with respect to the BOLD reference (transformation matrices, and six corresponding rotation and translation parameters) are estimated before any spatiotemporal filtering using `mcflirt` [FSL 5.0.9, @mcflirt]. BOLD runs were slice-time corrected using `3dTshift` from AFNI 20160207 [@afni, RRID:SCR_005927]. The BOLD time-series (including slice-timing correction when applied) were resampled onto their original, native space by applying the transforms to correct for head-motion. These resampled BOLD time-series will be referred to as *preprocessed BOLD in original space*, or just *preprocessed BOLD*. The BOLD time-series were resampled into several standard spaces, correspondingly generating the following *spatially-normalized, preprocessed BOLD runs*: MNI152NLin6Asym, MNIPediatricAsym:cohort-2. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. Several confounding time-series were calculated based on the *preprocessed BOLD*: framewise displacement (FD), DVARS and three region-wise global signals. FD and DVARS are calculated for each functional run, both using their implementations in *Nipype* [following the definitions by @power_fd_dvars]. The three global signals are extracted within the CSF, the WM, and the whole-brain masks. Additionally, a set of physiological regressors were extracted to allow for component-based noise correction [*CompCor*, @compcor]. Principal components are estimated after high-pass filtering the *preprocessed BOLD* time-series (using a discrete cosine filter with 128s cut-off) for the two *CompCor* variants: temporal (tCompCor) and anatomical (aCompCor). tCompCor components are then calculated from the top 5% variable voxels within a mask covering the subcortical regions. This subcortical mask is obtained by heavily eroding the brain mask, which ensures it does not include cortical GM regions. For aCompCor, components are calculated within the intersection of the aforementioned mask and the union of CSF and WM masks calculated in T1w space, after their projection to the native space of each functional run (using the inverse BOLD-to-T1w transformation). Components are also calculated separately within the WM and CSF masks. For each CompCor decomposition, the *k* components with the largest singular values are retained, such that the retained components' time series are sufficient to explain 50 percent of variance across the nuisance mask (CSF, WM, combined, or temporal). The remaining components are dropped from consideration. The head-motion estimates calculated in the correction step were also placed within the corresponding confounds file. The confound time series derived from head motion estimates and global signals were expanded with the inclusion of temporal derivatives and quadratic terms for each [@confounds_satterthwaite_2013]. Frames that exceeded a threshold of 0.5 mm FD or 1.5 standardised DVARS were annotated as motion outliers. All resamplings can be performed with *a single interpolation step* by composing all the pertinent transformations (i.e. head-motion transform matrices, susceptibility distortion correction when available, and co-registrations to anatomical and output spaces). Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs), configured with Lanczos interpolation to minimize the smoothing effects of other kernels [@lanczos]. Non-gridded (surface) resamplings were performed using `mri_vol2surf` (FreeSurfer). Many internal operations of *fMRIPrep* use *Nilearn* 0.6.2 [@nilearn, RRID:SCR_001362], mostly within the functional processing workflow. For more details of the pipeline, see [the section corresponding to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation"). ### Copyright Waiver The above boilerplate text was automatically generated by fMRIPrep with the express intention that users should copy and paste this text into their manuscripts *unchanged*. It is released under the [CC0](https://creativecommons.org/publicdomain/zero/1.0/) license. ### References 200310-17:40:08,914 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.func_derivatives_wf.raw_sources" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/func_derivatives_wf/raw_sources". 200310-17:40:08,944 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.func_derivatives_wf.raw_sources" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/func_derivatives_wf/raw_sources". 200310-17:40:08,981 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 200310-17:40:08,985 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 200310-17:40:08,930 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.func_derivatives_wf.raw_sources" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/func_derivatives_wf/raw_sources". 200310-17:40:08,989 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 200310-17:40:09,24 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.func_derivatives_wf.raw_sources". 200310-17:40:09,27 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.func_derivatives_wf.raw_sources". 200310-17:40:09,37 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.func_derivatives_wf.raw_sources". 200310-17:40:25,454 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/validate". 200310-17:40:25,466 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200310-17:40:25,456 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/validate". 200310-17:40:25,469 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200310-17:40:25,458 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl". 200310-17:40:25,474 nipype.workflow INFO: [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1 200310-17:40:25,463 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/validate". 200310-17:40:25,476 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200310-17:40:25,503 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl". 200310-17:40:25,516 nipype.workflow INFO: [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1 200310-17:40:25,679 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.validate". 200310-17:40:25,682 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.validate". 200310-17:40:25,678 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.validate". 200310-17:40:26,323 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.bidssrc" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/bidssrc". 200310-17:40:26,350 nipype.workflow INFO: [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber") 200310-17:40:26,363 nipype.interface INFO: No "flair" images found for sub-CBPD0201 200310-17:40:26,363 nipype.interface INFO: No "sbref" images found for sub-CBPD0201 200310-17:40:26,363 nipype.interface INFO: No "roi" images found for sub-CBPD0201 200310-17:40:26,367 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.bidssrc". 200310-17:40:38,607 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl". 200310-17:40:43,903 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/gen_ref". 200310-17:40:43,989 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200310-17:40:44,756 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/gen_ref". 200310-17:40:44,842 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200310-17:40:45,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/gen_ref". 200310-17:40:45,806 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200310-17:40:46,741 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_template_wf/t1w_ref_dimensions". 200310-17:40:48,446 nipype.workflow INFO: [Node] Running "t1w_ref_dimensions" ("niworkflows.interfaces.images.TemplateDimensions") 200310-17:40:48,787 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions". 200310-17:40:49,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.bids_info" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/bids_info". 200310-17:40:49,407 nipype.workflow INFO: [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo") 200310-17:40:51,424 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources". 200310-17:40:51,434 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.t1w_name" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/t1w_name". 200310-17:41:02,280 nipype.interface INFO: stderr 2020-03-10T17:41:02.279947:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200310-17:41:02,280 nipype.interface INFO: stderr 2020-03-10T17:41:02.280591:++ Authored by: RW Cox 200310-17:41:02,433 nipype.interface INFO: stderr 2020-03-10T17:41:02.433564:*+ WARNING: If you are performing spatial transformations on an oblique dset, 200310-17:41:02,433 nipype.interface INFO: stderr 2020-03-10T17:41:02.433564: such as /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/gen_ref/slice.nii.gz, 200310-17:41:02,433 nipype.interface INFO: stderr 2020-03-10T17:41:02.433564: or viewing/combining it with volumes of differing obliquity, 200310-17:41:02,433 nipype.interface INFO: stderr 2020-03-10T17:41:02.433564: you should consider running: 200310-17:41:02,433 nipype.interface INFO: stderr 2020-03-10T17:41:02.433564: 3dWarp -deoblique 200310-17:41:02,434 nipype.interface INFO: stderr 2020-03-10T17:41:02.433564: on this and other oblique datasets in the same session. 200310-17:41:02,434 nipype.interface INFO: stderr 2020-03-10T17:41:02.433564: See 3dWarp -help for details. 200310-17:41:02,434 nipype.interface INFO: stderr 2020-03-10T17:41:02.434161:++ Oblique dataset:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/gen_ref/slice.nii.gz is 8.422847 degrees from plumb. 200310-17:41:02,435 nipype.interface INFO: stderr 2020-03-10T17:41:02.435460:++ Coarse del was 10, replaced with 7 200310-17:41:03,387 nipype.interface INFO: stderr 2020-03-10T17:41:03.387378:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200310-17:41:03,437 nipype.interface INFO: stderr 2020-03-10T17:41:03.437711:++ Authored by: RW Cox 200310-17:41:03,439 nipype.interface INFO: stderr 2020-03-10T17:41:03.439419:*+ WARNING: If you are performing spatial transformations on an oblique dset, 200310-17:41:03,439 nipype.interface INFO: stderr 2020-03-10T17:41:03.439419: such as /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/gen_ref/slice.nii.gz, 200310-17:41:03,439 nipype.interface INFO: stderr 2020-03-10T17:41:03.439419: or viewing/combining it with volumes of differing obliquity, 200310-17:41:03,439 nipype.interface INFO: stderr 2020-03-10T17:41:03.439419: you should consider running: 200310-17:41:03,439 nipype.interface INFO: stderr 2020-03-10T17:41:03.439419: 3dWarp -deoblique 200310-17:41:03,439 nipype.interface INFO: stderr 2020-03-10T17:41:03.439419: on this and other oblique datasets in the same session. 200310-17:41:03,439 nipype.interface INFO: stderr 2020-03-10T17:41:03.439419: See 3dWarp -help for details. 200310-17:41:03,439 nipype.interface INFO: stderr 2020-03-10T17:41:03.439923:++ Oblique dataset:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/gen_ref/slice.nii.gz is 8.422847 degrees from plumb. 200310-17:41:03,440 nipype.interface INFO: stderr 2020-03-10T17:41:03.440063:++ Coarse del was 10, replaced with 7 200310-17:41:04,569 nipype.interface INFO: stderr 2020-03-10T17:41:04.569703:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200310-17:41:04,570 nipype.interface INFO: stderr 2020-03-10T17:41:04.570198:++ Authored by: RW Cox 200310-17:41:04,571 nipype.interface INFO: stderr 2020-03-10T17:41:04.571770:*+ WARNING: If you are performing spatial transformations on an oblique dset, 200310-17:41:04,571 nipype.interface INFO: stderr 2020-03-10T17:41:04.571770: such as /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/gen_ref/slice.nii.gz, 200310-17:41:04,571 nipype.interface INFO: stderr 2020-03-10T17:41:04.571770: or viewing/combining it with volumes of differing obliquity, 200310-17:41:04,572 nipype.interface INFO: stderr 2020-03-10T17:41:04.571770: you should consider running: 200310-17:41:04,572 nipype.interface INFO: stderr 2020-03-10T17:41:04.571770: 3dWarp -deoblique 200310-17:41:04,572 nipype.interface INFO: stderr 2020-03-10T17:41:04.571770: on this and other oblique datasets in the same session. 200310-17:41:04,572 nipype.interface INFO: stderr 2020-03-10T17:41:04.571770: See 3dWarp -help for details. 200310-17:41:04,572 nipype.interface INFO: stderr 2020-03-10T17:41:04.572259:++ Oblique dataset:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/gen_ref/slice.nii.gz is 8.422847 degrees from plumb. 200310-17:41:04,572 nipype.interface INFO: stderr 2020-03-10T17:41:04.572400:++ Coarse del was 10, replaced with 7 200310-17:41:12,840 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 200310-17:41:12,861 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources". 200310-17:41:12,889 nipype.workflow INFO: [Node] Running "t1w_name" ("nipype.interfaces.utility.wrappers.Function") 200310-17:41:12,892 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.t1w_name". 200310-17:41:13,926 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_template_wf.t1w_conform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_template_wf/t1w_conform". 200310-17:41:13,930 nipype.workflow INFO: [Node] Setting-up "_t1w_conform0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_template_wf/t1w_conform/mapflow/_t1w_conform0". 200310-17:41:13,948 nipype.workflow INFO: [Node] Running "_t1w_conform0" ("niworkflows.interfaces.images.Conform") 200310-17:41:14,97 nipype.workflow INFO: [Node] Finished "_t1w_conform0". 200310-17:41:14,119 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_template_wf.t1w_conform". 200310-17:41:15,552 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_template_wf.get1st" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_template_wf/get1st". 200310-17:41:31,458 nipype.workflow INFO: [Node] Running "get1st" ("nipype.interfaces.utility.base.Select") 200310-17:41:31,502 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_template_wf.get1st". 200310-17:41:35,526 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/fov_check". 200310-17:41:35,579 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/truncate_images". 200310-17:41:35,592 nipype.workflow INFO: [Node] Setting-up "_truncate_images0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0". 200310-17:41:35,615 nipype.workflow INFO: [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_maths.nii.gz TruncateImageIntensity /mnt/sub-CBPD0201/ses-01/anat/sub-CBPD0201_ses-01_run-01_T1w.nii.gz 0.01 0.999 256 200310-17:41:35,920 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/recon_config". 200310-17:41:38,333 nipype.workflow INFO: [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs") 200310-17:41:38,626 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.recon_config". 200310-17:41:46,161 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl". 200310-17:41:47,685 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl". 200310-17:41:47,695 nipype.workflow INFO: [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge") 200310-17:41:47,698 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl". 200310-17:41:53,481 nipype.workflow INFO: [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function") 200310-17:41:55,216 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.fov_check". 200310-17:42:34,231 nipype.workflow INFO: [Node] Finished "_truncate_images0". 200310-17:42:34,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.truncate_images". 200310-17:42:35,446 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4". 200310-17:42:35,452 nipype.workflow INFO: [Node] Setting-up "_inu_n40" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40". 200310-17:42:35,454 nipype.workflow INFO: [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-CBPD0201_ses-01_run-01_T1w_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-CBPD0201_ses-01_run-01_T1w_maths_corrected.nii.gz --shrink-factor 4 200310-17:49:50,286 nipype.interface INFO: stderr 2020-03-10T17:49:50.286923:++ Max displacement in automask = 0.12 (mm) at sub-brick 17 200310-17:49:50,287 nipype.interface INFO: stderr 2020-03-10T17:49:50.287502:++ Max delta displ in automask = 0.16 (mm) at sub-brick 2 200310-17:49:56,845 nipype.interface INFO: stderr 2020-03-10T17:49:56.845819:++ Max displacement in automask = 0.29 (mm) at sub-brick 17 200310-17:49:56,846 nipype.interface INFO: stderr 2020-03-10T17:49:56.846388:++ Max delta displ in automask = 0.28 (mm) at sub-brick 17 200310-17:50:07,684 nipype.interface INFO: stderr 2020-03-10T17:50:07.684532:++ Max displacement in automask = 1.50 (mm) at sub-brick 16 200310-17:50:07,684 nipype.interface INFO: stderr 2020-03-10T17:50:07.684793:++ Max delta displ in automask = 0.74 (mm) at sub-brick 12 200310-17:50:17,838 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.gen_ref". 200310-17:50:20,111 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_hmc_wf.mcflirt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_hmc_wf/mcflirt". 200310-17:50:20,143 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-CBPD0201/ses-01/func/sub-CBPD0201_ses-01_task-piper_run-01_bold.nii.gz -out /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_hmc_wf/mcflirt/sub-CBPD0201_ses-01_task-piper_run-01_bold_mcf.nii.gz -reffile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 200310-17:50:22,931 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_stc_wf.slice_timing_correction" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_stc_wf/slice_timing_correction". 200310-17:50:22,937 nipype.workflow INFO: [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command: 3dTshift -ignore 0 -prefix sub-CBPD0201_ses-01_task-piper_run-01_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2s /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_stc_wf/slice_timing_correction/sub-CBPD0201_ses-01_task-piper_run-01_bold.nii.gz 200310-17:50:24,862 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.gen_ref". 200310-17:50:26,600 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_hmc_wf.mcflirt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_hmc_wf/mcflirt". 200310-17:50:26,605 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-CBPD0201/ses-01/func/sub-CBPD0201_ses-01_task-rest_run-01_bold.nii.gz -out /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_hmc_wf/mcflirt/sub-CBPD0201_ses-01_task-rest_run-01_bold_mcf.nii.gz -reffile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 200310-17:50:29,735 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_stc_wf.slice_timing_correction" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_stc_wf/slice_timing_correction". 200310-17:50:29,742 nipype.workflow INFO: [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command: 3dTshift -ignore 0 -prefix sub-CBPD0201_ses-01_task-rest_run-01_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2s /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_stc_wf/slice_timing_correction/sub-CBPD0201_ses-01_task-rest_run-01_bold.nii.gz 200310-17:50:37,39 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.gen_ref". 200310-17:50:39,817 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_hmc_wf.mcflirt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_hmc_wf/mcflirt". 200310-17:50:39,822 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /mnt/sub-CBPD0201/ses-01/func/sub-CBPD0201_ses-01_task-rest_run-02_bold.nii.gz -out /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_hmc_wf/mcflirt/sub-CBPD0201_ses-01_task-rest_run-02_bold_mcf.nii.gz -reffile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 200310-17:50:43,225 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_stc_wf.slice_timing_correction" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_stc_wf/slice_timing_correction". 200310-17:50:43,232 nipype.workflow INFO: [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command: 3dTshift -ignore 0 -prefix sub-CBPD0201_ses-01_task-rest_run-02_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 2s /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_stc_wf/slice_timing_correction/sub-CBPD0201_ses-01_task-rest_run-02_bold.nii.gz 200310-17:54:30,267 nipype.workflow INFO: [Node] Finished "_inu_n40". 200310-17:54:30,284 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.inu_n4". 200310-17:54:32,184 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 200310-17:54:32,188 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/lap_target". 200310-17:54:32,191 nipype.workflow INFO: [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_maths.nii.gz Laplacian /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected.nii.gz 1.5 1 200310-17:54:32,196 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 200310-17:55:36,856 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 200310-17:55:38,394 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 200310-17:55:38,402 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 200310-17:55:47,421 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_stc_wf.slice_timing_correction". 200310-17:55:50,645 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_stc_wf.copy_xform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_stc_wf/copy_xform". 200310-17:55:50,649 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 200310-17:55:59,589 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 200310-17:56:01,538 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_stc_wf.slice_timing_correction". 200310-17:56:02,291 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 200310-17:56:02,296 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 200310-17:56:02,307 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/res_target". 200310-17:56:02,310 nipype.workflow INFO: [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected.nii.gz sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_resampled.nii.gz 4 4 4 1 200310-17:56:04,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_stc_wf.copy_xform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_stc_wf/copy_xform". 200310-17:56:04,497 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 200310-17:56:21,417 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.res_target". 200310-17:56:44,863 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.lap_target". 200310-17:56:46,406 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 200310-17:56:46,410 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 200310-17:57:36,364 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_stc_wf.copy_xform". 200310-17:57:38,834 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_split" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_split". 200310-17:57:38,837 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_stc_wf/copy_xform/sub-CBPD0201_ses-01_task-piper_run-01_bold_tshift_xform.nii.gz -t 200310-17:57:49,709 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_stc_wf.slice_timing_correction". 200310-17:57:50,44 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 200310-17:57:52,338 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 200310-17:57:52,346 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 200310-17:57:52,347 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_stc_wf.copy_xform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_stc_wf/copy_xform". 200310-17:57:52,351 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 200310-17:57:53,939 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_stc_wf.copy_xform". 200310-17:57:56,472 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_split" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_split". 200310-17:57:56,476 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_stc_wf/copy_xform/sub-CBPD0201_ses-01_task-rest_run-01_bold_tshift_xform.nii.gz -t 200310-17:58:00,116 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 200310-17:58:02,720 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-17:58:02,724 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 200310-17:58:05,432 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 200310-17:58:08,466 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 200310-17:58:08,471 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 200310-17:58:08,476 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/mrg_target". 200310-17:58:08,479 nipype.workflow INFO: [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge") 200310-17:58:08,482 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.mrg_target". 200310-17:58:15,945 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-17:58:20,215 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 200310-17:58:20,223 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 200310-17:59:23,423 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 200310-17:59:25,515 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200310-17:59:25,933 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200310-18:00:02,989 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 200310-18:00:05,481 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-18:00:05,484 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 200310-18:00:15,943 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_stc_wf.copy_xform". 200310-18:00:17,522 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 200310-18:00:17,565 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 200310-18:00:18,751 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-18:00:23,488 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_split" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_split". 200310-18:00:23,491 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_stc_wf/copy_xform/sub-CBPD0201_ses-01_task-rest_run-02_bold_tshift_xform.nii.gz -t 200310-18:00:32,725 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200310-18:00:34,956 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200310-18:00:34,960 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200310-18:00:37,532 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 200310-18:00:40,723 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200310-18:00:40,747 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 200310-18:00:40,751 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 200310-18:00:41,189 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200310-18:00:48,243 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_split". 200310-18:00:50,834 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./gen_ref". 200310-18:00:50,845 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref". 200310-18:00:50,860 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./gen_ref". 200310-18:00:50,916 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:00:50,924 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:00:50,927 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.gen_ref". 200310-18:00:50,936 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:00:50,967 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.gen_ref". 200310-18:00:50,968 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.gen_ref". 200310-18:00:54,994 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200310-18:00:55,476 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_hmc_wf.mcflirt". 200310-18:00:56,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_hmc_wf.normalize_motion" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_hmc_wf/normalize_motion". 200310-18:00:56,568 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_hmc_wf.fsl2itk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_hmc_wf/fsl2itk". 200310-18:00:56,618 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 200310-18:00:56,690 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_hmc_wf.normalize_motion". 200310-18:00:56,851 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 200310-18:01:00,942 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.fdisp" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/fdisp". 200310-18:01:00,945 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 200310-18:01:00,957 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.fdisp". 200310-18:01:04,750 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200310-18:01:04,754 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200310-18:01:10,850 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_split". 200310-18:01:12,533 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./gen_ref". 200310-18:01:12,595 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:01:12,598 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.gen_ref". 200310-18:01:14,188 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref". 200310-18:01:14,244 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:01:14,247 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.gen_ref". 200310-18:01:16,517 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./gen_ref". 200310-18:01:16,568 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:01:16,571 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.gen_ref". 200310-18:01:21,863 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_hmc_wf.mcflirt". 200310-18:01:24,618 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_hmc_wf.normalize_motion" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_hmc_wf/normalize_motion". 200310-18:01:24,682 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 200310-18:01:24,772 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_hmc_wf.normalize_motion". 200310-18:01:27,665 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.fdisp" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/fdisp". 200310-18:01:27,668 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 200310-18:01:27,675 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.fdisp". 200310-18:01:49,483 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200310-18:01:51,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200310-18:01:51,358 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200310-18:01:57,650 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200310-18:01:58,793 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200310-18:01:58,797 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200310-18:02:00,68 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200310-18:02:03,163 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200310-18:02:03,166 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200310-18:02:10,68 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200310-18:02:13,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200310-18:02:13,255 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200310-18:02:19,344 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.bids_info". 200310-18:02:26,805 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 200310-18:02:30,137 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-18:02:30,141 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 200310-18:02:35,965 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_hmc_wf.fsl2itk". 200310-18:02:37,586 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_transform". 200310-18:02:37,773 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200310-18:02:41,536 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-18:02:48,807 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200310-18:02:49,458 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200310-18:02:58,167 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200310-18:03:00,693 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200310-18:03:00,696 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200310-18:03:02,65 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200310-18:03:04,708 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200310-18:03:04,712 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200310-18:03:09,370 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200310-18:03:09,852 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200310-18:03:12,566 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200310-18:03:12,569 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200310-18:03:12,577 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200310-18:03:12,581 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200310-18:03:12,973 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200310-18:03:14,737 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200310-18:03:14,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200310-18:03:14,763 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200310-18:03:16,327 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200310-18:03:16,719 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200310-18:03:16,723 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200310-18:03:18,717 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200310-18:03:18,721 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200310-18:03:22,788 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200310-18:04:16,690 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200310-18:04:18,596 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200310-18:04:18,600 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200310-18:04:27,763 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200310-18:04:30,581 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200310-18:04:30,584 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200310-18:04:31,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200310-18:04:34,599 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200310-18:04:34,603 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200310-18:04:39,272 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200310-18:04:42,585 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200310-18:04:42,588 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200310-18:04:43,15 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200310-18:04:43,686 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200310-18:04:46,463 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200310-18:04:46,467 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200310-18:04:46,472 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200310-18:04:46,476 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200310-18:04:48,21 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200310-18:04:50,588 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200310-18:04:50,592 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200310-18:04:52,717 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200310-18:04:59,400 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_split". 200310-18:05:02,461 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./gen_ref". 200310-18:05:02,464 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref". 200310-18:05:02,524 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./gen_ref". 200310-18:05:02,620 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:05:02,624 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:05:02,626 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.gen_ref". 200310-18:05:02,648 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-18:05:02,676 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.gen_ref". 200310-18:05:02,693 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.gen_ref". 200310-18:05:06,47 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_hmc_wf.mcflirt". 200310-18:05:08,320 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_hmc_wf.normalize_motion" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_hmc_wf/normalize_motion". 200310-18:05:08,421 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 200310-18:05:08,504 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_hmc_wf.normalize_motion". 200310-18:05:11,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.fdisp" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/fdisp". 200310-18:05:11,775 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 200310-18:05:11,788 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.fdisp". 200310-18:05:39,739 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200310-18:05:40,975 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_hmc_wf.fsl2itk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_hmc_wf/fsl2itk". 200310-18:05:41,292 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 200310-18:07:30,676 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_hmc_wf.fsl2itk". 200310-18:07:33,89 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_transform". 200310-18:07:33,364 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200310-18:28:09,217 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_transform". 200310-18:28:10,616 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200310-18:28:10,620 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200310-18:28:11,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/merge". 200310-18:28:11,576 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200310-18:28:12,413 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200310-18:28:14,723 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200310-18:28:14,727 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200310-18:29:13,233 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200310-18:29:14,702 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200310-18:29:14,705 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200310-18:29:15,687 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200310-18:29:18,679 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200310-18:29:18,683 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200310-18:29:22,632 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200310-18:29:24,694 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200310-18:29:24,698 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200310-18:29:25,30 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200310-18:29:26,694 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200310-18:29:26,698 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200310-18:29:27,936 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200310-18:29:30,697 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200310-18:29:30,701 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200310-18:29:32,487 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200310-18:32:29,151 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.merge". 200310-18:32:30,95 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/validate". 200310-18:32:30,342 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200310-18:32:30,446 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate". 200310-18:32:32,96 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 200310-18:32:32,99 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200310-18:32:39,968 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_transform". 200310-18:32:41,248 nipype.interface INFO: stderr 2020-03-10T18:32:41.248332:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200310-18:32:41,248 nipype.interface INFO: stderr 2020-03-10T18:32:41.248829:++ Authored by: RW Cox 200310-18:32:41,249 nipype.interface INFO: stderr 2020-03-10T18:32:41.249511:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 200310-18:32:41,249 nipype.interface INFO: stderr 2020-03-10T18:32:41.249661: Warnings of this type will be muted for this session. 200310-18:32:41,249 nipype.interface INFO: stderr 2020-03-10T18:32:41.249661: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200310-18:32:41,250 nipype.interface INFO: stderr 2020-03-10T18:32:41.250730:*+ WARNING: If you are performing spatial transformations on an oblique dset, 200310-18:32:41,250 nipype.interface INFO: stderr 2020-03-10T18:32:41.250730: such as /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz, 200310-18:32:41,250 nipype.interface INFO: stderr 2020-03-10T18:32:41.250730: or viewing/combining it with volumes of differing obliquity, 200310-18:32:41,250 nipype.interface INFO: stderr 2020-03-10T18:32:41.250730: you should consider running: 200310-18:32:41,251 nipype.interface INFO: stderr 2020-03-10T18:32:41.250730: 3dWarp -deoblique 200310-18:32:41,251 nipype.interface INFO: stderr 2020-03-10T18:32:41.250730: on this and other oblique datasets in the same session. 200310-18:32:41,251 nipype.interface INFO: stderr 2020-03-10T18:32:41.250730: See 3dWarp -help for details. 200310-18:32:41,251 nipype.interface INFO: stderr 2020-03-10T18:32:41.251204:++ Oblique dataset:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 8.422847 degrees from plumb. 200310-18:32:41,251 nipype.interface INFO: stderr 2020-03-10T18:32:41.251340:++ Coarse del was 10, replaced with 7 200310-18:32:41,732 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_hmc_wf.fsl2itk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_hmc_wf/fsl2itk". 200310-18:32:41,897 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/merge". 200310-18:32:41,902 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 200310-18:32:42,72 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200310-18:33:59,93 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_hmc_wf.fsl2itk". 200310-18:33:59,892 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_transform". 200310-18:34:00,43 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200310-18:36:21,594 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.merge". 200310-18:36:24,865 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/validate". 200310-18:36:25,354 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200310-18:36:25,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate". 200310-18:36:28,861 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 200310-18:36:28,864 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200310-18:36:56,742 nipype.interface INFO: stderr 2020-03-10T18:36:56.742583:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200310-18:36:56,743 nipype.interface INFO: stderr 2020-03-10T18:36:56.743113:++ Authored by: RW Cox 200310-18:36:56,743 nipype.interface INFO: stderr 2020-03-10T18:36:56.743822:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 200310-18:36:56,743 nipype.interface INFO: stderr 2020-03-10T18:36:56.743968: Warnings of this type will be muted for this session. 200310-18:36:56,744 nipype.interface INFO: stderr 2020-03-10T18:36:56.743968: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745046:*+ WARNING: If you are performing spatial transformations on an oblique dset, 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745046: such as /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz, 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745046: or viewing/combining it with volumes of differing obliquity, 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745046: you should consider running: 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745046: 3dWarp -deoblique 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745046: on this and other oblique datasets in the same session. 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745046: See 3dWarp -help for details. 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745523:++ Oblique dataset:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 8.422847 degrees from plumb. 200310-18:36:56,745 nipype.interface INFO: stderr 2020-03-10T18:36:56.745672:++ Coarse del was 10, replaced with 7 200310-18:42:11,192 nipype.interface INFO: stderr 2020-03-10T18:42:11.192047:++ Max displacement in automask = 0.11 (mm) at sub-brick 2 200310-18:42:11,242 nipype.interface INFO: stderr 2020-03-10T18:42:11.242677:++ Max delta displ in automask = 0.13 (mm) at sub-brick 2 200310-18:42:53,659 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 200310-18:47:30,600 nipype.interface INFO: stderr 2020-03-10T18:47:30.600413:++ Max displacement in automask = 0.18 (mm) at sub-brick 12 200310-18:47:30,600 nipype.interface INFO: stderr 2020-03-10T18:47:30.600948:++ Max delta displ in automask = 0.17 (mm) at sub-brick 11 200310-18:48:08,619 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 200310-18:48:11,649 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 200310-18:48:11,653 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 200310-18:49:12,83 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 200310-18:49:13,693 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 200310-18:49:13,740 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 200310-18:51:04,39 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 200310-18:51:05,809 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 200310-18:51:05,814 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 200310-18:52:46,245 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 200310-18:52:48,412 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-18:52:48,416 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 200310-18:52:59,934 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-18:53:04,32 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 200310-18:53:04,37 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 200310-18:54:03,775 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 200310-18:54:05,266 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200310-18:54:06,282 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200310-18:55:08,818 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200310-18:55:11,308 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200310-18:55:11,312 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200310-18:55:30,24 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200310-18:55:31,308 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200310-18:55:31,312 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200310-18:56:20,226 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200310-18:56:23,328 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200310-18:56:23,332 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200310-18:56:24,949 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200310-18:56:27,314 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200310-18:56:27,318 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200310-18:57:18,545 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200310-18:57:21,14 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200310-18:57:21,17 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200310-18:57:21,587 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200310-18:57:22,947 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200310-18:57:22,951 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200310-18:57:25,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200310-18:57:26,936 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200310-18:57:26,940 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200310-18:57:27,140 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200310-18:57:28,933 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200310-18:57:28,938 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200310-18:57:29,638 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200310-18:57:30,955 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.dvars" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/dvars". 200310-18:57:30,965 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200310-18:57:30,969 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200310-18:57:31,328 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 200310-18:57:32,146 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200310-18:57:53,321 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_transform". 200310-18:57:54,445 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 200310-18:57:54,452 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/merge". 200310-18:57:54,459 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 200310-18:57:54,605 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200310-18:58:01,462 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 200310-18:58:02,582 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 200310-18:58:02,587 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 200310-18:58:02,598 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/init_aff". 200310-18:58:02,602 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz,/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1 200310-18:58:30,183 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.init_aff". 200310-18:58:32,722 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/norm". 200310-18:58:32,745 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform Affine[ 0.1 ] --metric MI[ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0 200310-18:58:57,365 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 200310-18:58:59,311 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-18:58:59,315 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 200310-18:59:13,114 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-18:59:18,707 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200310-18:59:19,785 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200310-18:59:48,30 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200310-18:59:49,865 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200310-18:59:49,869 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200310-18:59:57,647 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200310-18:59:59,872 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200310-18:59:59,876 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200310-19:00:21,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200310-19:00:21,890 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200310-19:00:21,894 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200310-19:00:22,517 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200310-19:00:23,890 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200310-19:00:23,894 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200310-19:00:46,137 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200310-19:00:47,896 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200310-19:00:47,899 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200310-19:00:48,249 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200310-19:00:49,908 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200310-19:00:49,911 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200310-19:00:51,256 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200310-19:00:51,912 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200310-19:00:51,916 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200310-19:00:52,36 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200310-19:00:53,900 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200310-19:00:53,904 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200310-19:00:54,359 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200310-19:00:54,413 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.merge". 200310-19:00:55,780 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.dvars" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/dvars". 200310-19:00:55,790 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200310-19:00:55,794 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200310-19:00:55,799 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/validate". 200310-19:00:56,34 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 200310-19:00:56,40 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200310-19:00:56,141 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate". 200310-19:00:56,494 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200310-19:00:57,912 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 200310-19:00:57,933 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200310-19:01:15,292 nipype.interface INFO: stderr 2020-03-10T19:01:15.292732:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200310-19:01:15,317 nipype.interface INFO: stderr 2020-03-10T19:01:15.317693:++ Authored by: RW Cox 200310-19:01:15,318 nipype.interface INFO: stderr 2020-03-10T19:01:15.318430:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 200310-19:01:15,318 nipype.interface INFO: stderr 2020-03-10T19:01:15.318578: Warnings of this type will be muted for this session. 200310-19:01:15,318 nipype.interface INFO: stderr 2020-03-10T19:01:15.318578: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200310-19:01:15,319 nipype.interface INFO: stderr 2020-03-10T19:01:15.319667:*+ WARNING: If you are performing spatial transformations on an oblique dset, 200310-19:01:15,319 nipype.interface INFO: stderr 2020-03-10T19:01:15.319667: such as /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz, 200310-19:01:15,319 nipype.interface INFO: stderr 2020-03-10T19:01:15.319667: or viewing/combining it with volumes of differing obliquity, 200310-19:01:15,319 nipype.interface INFO: stderr 2020-03-10T19:01:15.319667: you should consider running: 200310-19:01:15,319 nipype.interface INFO: stderr 2020-03-10T19:01:15.319667: 3dWarp -deoblique 200310-19:01:15,320 nipype.interface INFO: stderr 2020-03-10T19:01:15.319667: on this and other oblique datasets in the same session. 200310-19:01:15,320 nipype.interface INFO: stderr 2020-03-10T19:01:15.319667: See 3dWarp -help for details. 200310-19:01:15,320 nipype.interface INFO: stderr 2020-03-10T19:01:15.320164:++ Oblique dataset:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 8.422847 degrees from plumb. 200310-19:01:15,320 nipype.interface INFO: stderr 2020-03-10T19:01:15.320302:++ Coarse del was 10, replaced with 7 200310-19:02:54,150 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.dvars". 200310-19:07:37,513 nipype.interface INFO: stderr 2020-03-10T19:07:37.513766:++ Max displacement in automask = 0.23 (mm) at sub-brick 15 200310-19:07:37,514 nipype.interface INFO: stderr 2020-03-10T19:07:37.514311:++ Max delta displ in automask = 0.24 (mm) at sub-brick 16 200310-19:08:15,288 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 200310-19:08:18,120 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.dvars". 200310-19:08:21,981 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 200310-19:08:21,989 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 200310-19:09:17,114 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 200310-19:09:19,7 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 200310-19:09:19,15 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 200310-19:09:34,719 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 200310-19:09:37,35 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 200310-19:09:37,40 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 200310-19:11:04,232 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 200310-19:11:07,101 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-19:11:07,105 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 200310-19:11:18,463 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-19:11:22,508 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon1". 200310-19:11:22,648 nipype.interface INFO: recon-all complete : Not running 200310-19:11:22,648 nipype.workflow INFO: [Node] Running "autorecon1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-19:11:22,650 nipype.interface INFO: recon-all complete : Not running 200310-19:11:23,527 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon1". 200310-19:11:25,406 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200310-19:11:25,857 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm". 200310-19:11:26,302 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200310-19:11:28,221 nipype.workflow INFO: [Node] Running "fsnative2t1w_xfm" ("niworkflows.interfaces.freesurfer.PatchedRobustRegister"), a CommandLine Interface with command: mri_robust_register --satit --iscale --lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --mov /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/T1.mgz --dst /mnt/sub-CBPD0201/ses-01/anat/sub-CBPD0201_ses-01_run-01_T1w.nii.gz 200310-19:12:29,997 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200310-19:12:31,634 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200310-19:12:31,637 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200310-19:12:51,326 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200310-19:12:53,307 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200310-19:12:53,311 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200310-19:13:29,884 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200310-19:13:31,769 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200310-19:13:31,773 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200310-19:13:33,579 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200310-19:13:35,799 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200310-19:13:35,803 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200310-19:14:35,157 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200310-19:14:37,807 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200310-19:14:37,810 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200310-19:14:38,750 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200310-19:14:41,803 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200310-19:14:41,807 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200310-19:14:45,703 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200310-19:14:47,683 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200310-19:14:47,686 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200310-19:14:47,977 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200310-19:14:49,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200310-19:14:49,815 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200310-19:14:51,57 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200310-19:14:53,769 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.dvars" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/dvars". 200310-19:14:53,774 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 200310-19:14:53,779 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200310-19:14:53,783 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200310-19:14:55,691 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200310-19:20:17,484 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm". 200310-19:20:20,678 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/t1w2fsnative_xfm". 200310-19:20:20,714 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_inv" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/lta2itk_inv". 200310-19:20:20,721 nipype.workflow INFO: [Node] Running "t1w2fsnative_xfm" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --invert --outlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/t1w2fsnative_xfm/out.lta 200310-19:20:20,758 nipype.workflow INFO: [Node] Running "lta2itk_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta --outitk /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/lta2itk_inv/out.txt 200310-19:20:21,956 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_inv". 200310-19:20:22,6 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm". 200310-19:20:25,635 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_fwd" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/lta2itk_fwd". 200310-19:20:25,639 nipype.workflow INFO: [Node] Running "lta2itk_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/t1w2fsnative_xfm/out.lta --outitk /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/lta2itk_fwd/out.txt 200310-19:20:26,639 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_fwd". 200310-19:27:32,112 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.dvars". 200310-20:49:59,262 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.norm". 200310-20:50:00,529 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask". 200310-20:50:00,570 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/utooley/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz --interpolation Gaussian --output tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz --reference-image /mnt/sub-CBPD0201/ses-01/anat/sub-CBPD0201_ses-01_run-01_T1w.nii.gz --transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ] 200310-20:50:48,349 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask". 200310-20:50:48,553 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask". 200310-20:50:48,556 nipype.workflow INFO: [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command: ThresholdImage 3 /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000 200310-20:50:49,558 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask". 200310-20:50:50,561 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask". 200310-20:50:50,564 nipype.workflow INFO: [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz PadImage /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 10 200310-20:50:50,570 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask". 200310-20:50:50,573 nipype.workflow INFO: [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz MD /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 2 200310-20:50:53,168 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask". 200310-20:50:53,779 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask". 200310-20:50:54,559 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask". 200310-20:50:54,562 nipype.workflow INFO: [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz GetLargestComponent /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 200310-20:50:56,99 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask". 200310-20:50:56,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos". 200310-20:50:56,564 nipype.workflow INFO: [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command: Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled.nii.gz] --use-random-seed 1 200310-20:52:09,742 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos". 200310-20:52:10,598 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm". 200310-20:52:10,602 nipype.workflow INFO: [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths.nii.gz PadImage /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled.nii.gz 10 200310-20:52:12,114 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm". 200310-20:52:12,600 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels". 200310-20:52:12,609 nipype.workflow INFO: [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function") 200310-20:52:12,945 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels". 200310-20:52:14,603 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf". 200310-20:52:14,606 nipype.workflow INFO: [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-01.nii.gz -10 200310-20:52:14,613 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf". 200310-20:52:14,616 nipype.workflow INFO: [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-01.nii.gz 10 200310-20:52:14,627 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm". 200310-20:52:14,630 nipype.workflow INFO: [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-02.nii.gz 200310-20:52:14,638 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm". 200310-20:52:14,641 nipype.workflow INFO: [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-03.nii.gz 200310-20:52:18,886 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf". 200310-20:52:21,603 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm". 200310-20:52:22,40 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm". 200310-20:52:22,735 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm". 200310-20:52:22,738 nipype.workflow INFO: [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz 2 200310-20:52:22,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm". 200310-20:52:22,768 nipype.workflow INFO: [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz 200310-20:52:26,296 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm". 200310-20:52:26,854 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm". 200310-20:52:26,857 nipype.workflow INFO: [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10 200310-20:52:30,867 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm". 200310-20:52:32,168 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf". 200310-20:52:39,389 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm". 200310-20:52:40,616 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm". 200310-20:52:40,619 nipype.workflow INFO: [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz 200310-20:52:41,758 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm". 200310-20:52:42,618 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm". 200310-20:52:42,621 nipype.workflow INFO: [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 08_mult_gm_maths.nii.gz addtozero /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-CBPD0201_ses-01_run-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz 200310-20:52:47,140 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm". 200310-20:52:48,622 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm". 200310-20:52:48,625 nipype.workflow INFO: [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz 200310-20:52:49,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm". 200310-20:52:50,623 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm". 200310-20:52:50,627 nipype.workflow INFO: [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10 200310-20:52:50,633 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm". 200310-20:52:50,637 nipype.workflow INFO: [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz 200310-20:52:53,410 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm". 200310-20:52:54,757 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms". 200310-20:52:54,761 nipype.workflow INFO: [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge") 200310-20:52:54,764 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms". 200310-20:52:56,774 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm". 200310-20:52:58,629 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm". 200310-20:52:58,632 nipype.workflow INFO: [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10 200310-20:52:58,637 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2". 200310-20:52:58,639 nipype.workflow INFO: [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function") 200310-20:52:59,51 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2". 200310-20:53:00,99 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm". 200310-20:53:00,632 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7". 200310-20:53:00,636 nipype.workflow INFO: [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz 200310-20:53:04,911 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7". 200310-20:53:06,634 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7". 200310-20:53:06,638 nipype.workflow INFO: [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2 200310-20:53:10,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7". 200310-20:53:12,639 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7". 200310-20:53:12,642 nipype.workflow INFO: [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz 200310-20:53:14,672 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7". 200310-20:53:16,642 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7". 200310-20:53:16,646 nipype.workflow INFO: [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4 200310-20:53:19,133 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7". 200310-20:53:20,645 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7". 200310-20:53:20,649 nipype.workflow INFO: [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2 200310-20:53:30,741 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7". 200310-20:53:32,651 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2". 200310-20:53:32,655 nipype.workflow INFO: [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 200310-20:53:37,62 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2". 200310-20:53:38,656 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2". 200310-20:53:38,659 nipype.workflow INFO: [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5 200310-20:53:41,101 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2". 200310-20:53:42,658 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2". 200310-20:53:42,662 nipype.workflow INFO: [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5 200310-20:53:46,868 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2". 200310-20:53:48,664 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask". 200310-20:53:48,667 nipype.workflow INFO: [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10 200310-20:53:49,732 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask". 200310-20:53:50,665 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform". 200310-20:53:50,669 nipype.workflow INFO: [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function") 200310-20:53:50,834 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform". 200310-20:53:56,673 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final". 200310-20:53:56,679 nipype.workflow INFO: [Node] Setting-up "_inu_n4_final0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0". 200310-20:53:56,681 nipype.workflow INFO: [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /mnt/sub-CBPD0201/ses-01/anat/sub-CBPD0201_ses-01_run-01_T1w.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-CBPD0201_ses-01_run-01_T1w_corrected.nii.gz, sub-CBPD0201_ses-01_run-01_T1w_bias.nii.gz ] -r --shrink-factor 4 --weight-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz 200310-20:55:26,981 nipype.workflow INFO: [Node] Finished "_inu_n4_final0". 200310-20:55:26,983 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final". 200310-20:55:28,721 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/apply_mask". 200310-20:55:28,725 nipype.workflow INFO: [Node] Setting-up "_apply_mask0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0". 200310-20:55:28,727 nipype.workflow INFO: [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-CBPD0201_ses-01_run-01_T1w_corrected.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-CBPD0201_ses-01_run-01_T1w_corrected_masked.nii.gz 200310-20:55:30,391 nipype.workflow INFO: [Node] Finished "_apply_mask0". 200310-20:55:30,393 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.brain_extraction_wf.apply_mask". 200310-20:55:36,854 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/trunc_mov". 200310-20:55:36,858 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz 0.01 0.999 256 200310-20:55:36,863 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/trunc_mov". 200310-20:55:36,866 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz 0.01 0.999 256 200310-20:55:36,871 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.trunc_mov" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/trunc_mov". 200310-20:55:36,874 nipype.workflow INFO: [Node] Running "trunc_mov" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_maths.nii.gz TruncateImageIntensity /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz 0.01 0.999 256 200310-20:55:59,194 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern". 200310-20:56:00,276 nipype.workflow INFO: [Node] Running "skull_strip_extern" ("niworkflows.interfaces.freesurfer.FSInjectBrainExtracted") 200310-20:56:00,282 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern". 200310-20:56:01,681 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol". 200310-20:56:01,806 nipype.interface INFO: recon-all complete : Not running 200310-20:56:01,806 nipype.workflow INFO: [Node] Running "autorecon2_vol" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:01,808 nipype.interface INFO: recon-all complete : Not running 200310-20:56:02,947 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol". 200310-20:56:03,460 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 200310-20:56:03,597 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 200310-20:56:03,843 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.trunc_mov". 200310-20:56:05,540 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 200310-20:56:05,548 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 200310-20:56:05,617 nipype.interface INFO: recon-all complete : Not running 200310-20:56:05,617 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:05,620 nipype.interface INFO: recon-all complete : Not running 200310-20:56:05,624 nipype.interface INFO: recon-all complete : Not running 200310-20:56:05,624 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:05,627 nipype.interface INFO: recon-all complete : Not running 200310-20:56:05,843 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 200310-20:56:05,856 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 200310-20:56:07,95 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs". 200310-20:56:07,102 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0". 200310-20:56:07,107 nipype.interface INFO: recon-all complete : Not running 200310-20:56:07,107 nipype.workflow INFO: [Node] Running "_autorecon_surfs0" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:07,109 nipype.interface INFO: recon-all complete : Not running 200310-20:56:07,233 nipype.workflow INFO: [Node] Finished "_autorecon_surfs0". 200310-20:56:07,236 nipype.workflow INFO: [Node] Setting-up "_autorecon_surfs1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1". 200310-20:56:07,241 nipype.interface INFO: recon-all complete : Not running 200310-20:56:07,241 nipype.workflow INFO: [Node] Running "_autorecon_surfs1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:07,244 nipype.interface INFO: recon-all complete : Not running 200310-20:56:07,340 nipype.workflow INFO: [Node] Finished "_autorecon_surfs1". 200310-20:56:07,344 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs". 200310-20:56:09,94 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.cortribbon" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/cortribbon". 200310-20:56:09,99 nipype.interface INFO: recon-all complete : Not running 200310-20:56:09,99 nipype.workflow INFO: [Node] Running "cortribbon" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:09,101 nipype.interface INFO: recon-all complete : Not running 200310-20:56:09,223 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.cortribbon". 200310-20:56:13,548 nipype.workflow INFO: [Node] Setting-up "_parcstats0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats0". 200310-20:56:13,553 nipype.workflow INFO: [Node] Setting-up "_parcstats1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats1". 200310-20:56:13,581 nipype.interface INFO: recon-all complete : Not running 200310-20:56:13,581 nipype.workflow INFO: [Node] Running "_parcstats0" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:13,584 nipype.interface INFO: recon-all complete : Not running 200310-20:56:13,590 nipype.interface INFO: recon-all complete : Not running 200310-20:56:13,590 nipype.workflow INFO: [Node] Running "_parcstats1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:13,593 nipype.interface INFO: recon-all complete : Not running 200310-20:56:13,807 nipype.workflow INFO: [Node] Finished "_parcstats1". 200310-20:56:13,818 nipype.workflow INFO: [Node] Finished "_parcstats0". 200310-20:56:15,322 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.parcstats" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats". 200310-20:56:15,329 nipype.workflow INFO: [Node] Setting-up "_parcstats0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats0". 200310-20:56:15,334 nipype.interface INFO: recon-all complete : Not running 200310-20:56:15,334 nipype.workflow INFO: [Node] Running "_parcstats0" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:15,337 nipype.interface INFO: recon-all complete : Not running 200310-20:56:15,448 nipype.workflow INFO: [Node] Finished "_parcstats0". 200310-20:56:15,451 nipype.workflow INFO: [Node] Setting-up "_parcstats1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats1". 200310-20:56:15,456 nipype.interface INFO: recon-all complete : Not running 200310-20:56:15,456 nipype.workflow INFO: [Node] Running "_parcstats1" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:15,459 nipype.interface INFO: recon-all complete : Not running 200310-20:56:15,555 nipype.workflow INFO: [Node] Finished "_parcstats1". 200310-20:56:15,559 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.parcstats". 200310-20:56:17,380 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3". 200310-20:56:17,387 nipype.interface INFO: recon-all complete : Not running 200310-20:56:17,387 nipype.workflow INFO: [Node] Running "autorecon3" ("smriprep.interfaces.freesurfer.ReconAll"), a CommandLine Interface with command: echo recon-all: nothing to do 200310-20:56:17,390 nipype.interface INFO: recon-all complete : Not running 200310-20:56:17,515 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3". 200310-20:56:19,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/fs_datasource". 200310-20:56:19,146 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/fs_datasource". 200310-20:56:19,149 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 200310-20:56:19,153 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/get_surfaces". 200310-20:56:19,156 nipype.workflow INFO: [Node] Running "get_surfaces" ("nipype.interfaces.io.FreeSurferSource") 200310-20:56:19,225 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces". 200310-20:56:19,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource". 200310-20:56:19,328 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg". 200310-20:56:19,359 nipype.workflow INFO: [Node] Running "fs_datasource" ("nipype.interfaces.io.FreeSurferSource") 200310-20:56:19,421 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource". 200310-20:56:19,714 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.recon_report" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_reports_wf/recon_report". 200310-20:56:19,718 nipype.workflow INFO: [Node] Running "recon_report" ("smriprep.interfaces.reports.FSSurfaceReport") 200310-20:56:19,774 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-CBPD0201 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer_t1 200310-20:56:21,648 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative". 200310-20:56:21,658 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/aseg.mgz --seg /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg.mgz --temp /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/rawavg.mgz --o /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz 200310-20:56:21,669 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative". 200310-20:56:21,674 nipype.workflow INFO: [Node] Running "tonative" ("nipype.interfaces.freesurfer.model.Label2Vol"), a CommandLine Interface with command: mri_label2vol --regheader /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/aseg.mgz --seg /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg.mgz --temp /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/rawavg.mgz --o /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz 200310-20:56:23,621 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 200310-20:56:23,626 nipype.workflow INFO: [Node] Running "_midthickness0" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.pial -thickness -thickness_name /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.thickness /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0/lh.smoothwm 0.5 midthickness 200310-20:56:23,632 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 200310-20:56:23,636 nipype.workflow INFO: [Node] Running "_midthickness1" ("niworkflows.interfaces.freesurfer.MakeMidthickness"), a CommandLine Interface with command: mris_expand -pial /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.pial -thickness -thickness_name /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.thickness /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1/rh.smoothwm 0.5 midthickness 200310-20:57:11,662 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonative". 200310-20:57:11,779 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonative". 200310-20:57:13,671 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii". 200310-20:57:13,677 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz --input_volume /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonative/aparc+aseg_vol.nii.gz --output_volume /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz 200310-20:57:13,680 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii". 200310-20:57:13,686 nipype.workflow INFO: [Node] Running "tonii" ("nipype.interfaces.freesurfer.preprocess.MRIConvert"), a CommandLine Interface with command: mri_convert --out_type nii --resample_type nearest --reslice_like /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz --input_volume /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonative/aseg_vol.nii.gz --output_volume /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz 200310-20:57:20,71 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.recon_report". 200310-20:57:21,410 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.tonii". 200310-20:57:21,510 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.tonii". 200310-20:57:42,622 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.refine" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/refine". 200310-20:57:42,626 nipype.workflow INFO: [Node] Running "refine" ("niworkflows.interfaces.freesurfer.RefineBrainMask") 200310-20:59:03,283 nipype.interface INFO: stdout 2020-03-10T20:59:03.283732: 200310-20:59:03,284 nipype.interface INFO: stdout 2020-03-10T20:59:03.283732:Matrix from LTA: 200310-20:59:03,284 nipype.interface INFO: stdout 2020-03-10T20:59:03.283732: 0.99928 0.03613 -0.01144 -0.19568; 200310-20:59:03,284 nipype.interface INFO: stdout 2020-03-10T20:59:03.283732: 0.00621 0.14174 0.98989 0.48859; 200310-20:59:03,284 nipype.interface INFO: stdout 2020-03-10T20:59:03.283732: 0.03738 -0.98925 0.14141 1.13989; 200310-20:59:03,284 nipype.interface INFO: stdout 2020-03-10T20:59:03.283732: 0.00000 0.00000 0.00000 1.00000; 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975: 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:movvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:targvol /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:outvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:regfile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:invert 0 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:tal 0 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:talres 2 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:regheader 0 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:noresample 0 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:interp nearest (0) 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:precision float (3) 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:Gdiag_no -1 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:Synth 0 200310-20:59:03,848 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:SynthSeed 1584411551 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975: 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975:Final tkRAS-to-tkRAS Matrix is: 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975: 0.99928 0.03613 -0.01144 -0.19567; 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975: 0.00621 0.14174 0.98989 0.48859; 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975: 0.03738 -0.98925 0.14141 1.13989; 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.847975: 0.00000 0.00000 0.00000 1.00000; 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.849370: 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.849370: 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.849370:Vox2Vox Matrix is: 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.849370: 0.49964 -0.00572 -0.01806 -12.81186; 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.849370: 0.01869 0.07070 0.49462 -27.32436; 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.849370:-0.00310 -0.49494 0.07087 92.42325; 200310-20:59:03,849 nipype.interface INFO: stdout 2020-03-10T20:59:03.849370: 0.00000 0.00000 0.00000 1.00000; 200310-20:59:07,924 nipype.interface INFO: stdout 2020-03-10T20:59:07.924657: 200310-20:59:07,924 nipype.interface INFO: stdout 2020-03-10T20:59:07.924657:Resampling 200310-20:59:07,924 nipype.interface INFO: stdout 2020-03-10T20:59:07.924657:Output registration matrix is identity 200310-20:59:07,924 nipype.interface INFO: stdout 2020-03-10T20:59:07.924657: 200310-20:59:07,925 nipype.interface INFO: stdout 2020-03-10T20:59:07.924657:mri_vol2vol done 200310-21:00:33,797 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.mri_coreg". 200310-21:00:35,251 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister". 200310-21:00:35,260 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta --reg /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.dat --o /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-CBPD0201 200310-21:00:35,279 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg". 200310-21:00:35,285 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-CBPD0201 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer_t1 200310-21:03:49,919 nipype.interface INFO: stdout 2020-03-10T21:03:49.919628: 200310-21:03:49,920 nipype.interface INFO: stdout 2020-03-10T21:03:49.919628:Matrix from LTA: 200310-21:03:49,920 nipype.interface INFO: stdout 2020-03-10T21:03:49.919628: 0.99901 0.04342 -0.00967 0.08054; 200310-21:03:49,920 nipype.interface INFO: stdout 2020-03-10T21:03:49.919628: 0.00377 0.13400 0.99097 -0.02062; 200310-21:03:49,920 nipype.interface INFO: stdout 2020-03-10T21:03:49.919628: 0.04432 -0.99003 0.13370 1.17049; 200310-21:03:49,920 nipype.interface INFO: stdout 2020-03-10T21:03:49.919628: 0.00000 0.00000 0.00000 1.00000; 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005: 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:movvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:targvol /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:outvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:regfile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:invert 0 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:tal 0 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:talres 2 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:regheader 0 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:noresample 0 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:interp nearest (0) 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:precision float (3) 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:Gdiag_no -1 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:Synth 0 200310-21:03:50,625 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:SynthSeed 1584112282 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005: 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005:Final tkRAS-to-tkRAS Matrix is: 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005: 0.99901 0.04342 -0.00967 0.08057; 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005: 0.00377 0.13400 0.99097 -0.02065; 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005: 0.04432 -0.99003 0.13370 1.17049; 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.625005: 0.00000 0.00000 0.00000 1.00000; 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.626400: 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.626400: 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.626400:Vox2Vox Matrix is: 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.626400: 0.49951 -0.00484 -0.02171 -12.57915; 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.626400: 0.02216 0.06685 0.49502 -27.34065; 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.626400:-0.00189 -0.49549 0.06700 92.57761; 200310-21:03:50,626 nipype.interface INFO: stdout 2020-03-10T21:03:50.626400: 0.00000 0.00000 0.00000 1.00000; 200310-21:03:55,985 nipype.interface INFO: stdout 2020-03-10T21:03:55.984968: 200310-21:03:55,985 nipype.interface INFO: stdout 2020-03-10T21:03:55.984968:Resampling 200310-21:03:55,985 nipype.interface INFO: stdout 2020-03-10T21:03:55.984968:Output registration matrix is identity 200310-21:03:55,985 nipype.interface INFO: stdout 2020-03-10T21:03:55.984968: 200310-21:03:55,985 nipype.interface INFO: stdout 2020-03-10T21:03:55.984968:mri_vol2vol done 200310-21:04:20,856 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.refine". 200310-21:04:24,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.applyrefined" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/applyrefined". 200310-21:04:24,763 nipype.workflow INFO: [Node] Running "applyrefined" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/refine/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/applyrefined/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked.nii.gz 200310-21:04:33,653 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.applyrefined". 200310-21:04:35,427 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref". 200310-21:04:35,431 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-21:04:35,437 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref". 200310-21:04:35,441 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-21:04:35,447 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/gen_ref". 200310-21:04:35,451 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.utils.GenerateSamplingReference") 200310-21:04:35,458 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.t1w_dseg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg". 200310-21:04:35,461 nipype.workflow INFO: [Node] Running "t1w_dseg" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command: fast -N -p -g -S 1 /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked.nii.gz 200310-21:04:46,960 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.gen_ref". 200310-21:04:46,974 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.gen_ref". 200310-21:04:46,963 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.gen_ref". 200310-21:04:49,587 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/aparc_t1w_tfm". 200310-21:04:49,592 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 200310-21:04:49,595 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/aseg_t1w_tfm". 200310-21:04:49,600 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 200310-21:04:49,605 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/aparc_t1w_tfm". 200310-21:04:49,609 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 200310-21:04:49,615 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/aseg_t1w_tfm". 200310-21:04:49,620 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 200310-21:06:06,242 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.aseg_t1w_tfm". 200310-21:06:06,353 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.aseg_t1w_tfm". 200310-21:06:07,305 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.aparc_t1w_tfm". 200310-21:06:07,373 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.aparc_t1w_tfm". 200310-21:06:12,542 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.aparc_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/aparc_t1w_tfm". 200310-21:06:12,546 nipype.workflow INFO: [Node] Running "aparc_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 200310-21:06:12,553 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.aseg_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/aseg_t1w_tfm". 200310-21:06:12,557 nipype.workflow INFO: [Node] Running "aseg_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz -t identity 200310-21:06:20,727 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.mri_coreg". 200310-21:06:22,193 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister". 200310-21:06:22,201 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.mri_coreg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg". 200310-21:06:22,207 nipype.workflow INFO: [Node] Running "mri_coreg" ("niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"), a CommandLine Interface with command: mri_coreg --s sub-CBPD0201 --dof 6 --ftol 1.000000e-04 --linmintol 1.000000e-02 --threads 8 --lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --sep 4 --mov /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz --sd /mnt/derivatives/freesurfer_t1 200310-21:06:22,211 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta --reg /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.dat --o /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-CBPD0201 200310-21:07:10,919 nipype.interface INFO: stdout 2020-03-10T21:07:10.919695: 200310-21:07:10,920 nipype.interface INFO: stdout 2020-03-10T21:07:10.919695:Matrix from LTA: 200310-21:07:10,920 nipype.interface INFO: stdout 2020-03-10T21:07:10.919695: 0.99935 0.03497 -0.00831 -0.08501; 200310-21:07:10,920 nipype.interface INFO: stdout 2020-03-10T21:07:10.919695: 0.00367 0.13072 0.99141 0.47326; 200310-21:07:10,920 nipype.interface INFO: stdout 2020-03-10T21:07:10.919695: 0.03576 -0.99080 0.13051 2.03000; 200310-21:07:10,920 nipype.interface INFO: stdout 2020-03-10T21:07:10.919695: 0.00000 0.00000 0.00000 1.00000; 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997: 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:movvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:targvol /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:outvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:regfile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:invert 0 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:tal 0 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:talres 2 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:regheader 0 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:noresample 0 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:interp nearest (0) 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:precision float (3) 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:Gdiag_no -1 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:Synth 0 200310-21:07:12,158 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:SynthSeed 1584307533 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997: 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997:Final tkRAS-to-tkRAS Matrix is: 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997: 0.99935 0.03497 -0.00831 -0.08501; 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997: 0.00367 0.13072 0.99141 0.47323; 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997: 0.03576 -0.99080 0.13051 2.03003; 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.157997: 0.00000 0.00000 0.00000 1.00000; 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.159379: 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.159379: 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.159379:Vox2Vox Matrix is: 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.159379: 0.49968 -0.00415 -0.01749 -13.14604; 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.159379: 0.01788 0.06525 0.49540 -27.06741; 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.159379:-0.00183 -0.49571 0.06536 93.05571; 200310-21:07:12,159 nipype.interface INFO: stdout 2020-03-10T21:07:12.159379: 0.00000 0.00000 0.00000 1.00000; 200310-21:07:20,976 nipype.interface INFO: stdout 2020-03-10T21:07:20.975984: 200310-21:07:20,976 nipype.interface INFO: stdout 2020-03-10T21:07:20.975984:Resampling 200310-21:07:20,976 nipype.interface INFO: stdout 2020-03-10T21:07:20.975984:Output registration matrix is identity 200310-21:07:20,976 nipype.interface INFO: stdout 2020-03-10T21:07:20.975984: 200310-21:07:20,976 nipype.interface INFO: stdout 2020-03-10T21:07:20.975984:mri_vol2vol done 200310-21:07:24,458 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.aseg_t1w_tfm". 200310-21:07:26,531 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.aparc_t1w_tfm". 200310-21:10:01,528 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.bbregister". 200310-21:10:09,300 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 200310-21:10:09,302 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta --outlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 200310-21:10:09,308 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 200310-21:10:09,311 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 200310-21:10:10,146 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 200310-21:10:10,298 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 200310-21:10:13,236 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 200310-21:10:13,241 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 200310-21:10:13,242 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 200310-21:10:13,242 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 200310-21:10:13,243 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 200310-21:10:13,244 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 200310-21:10:13,244 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 200310-21:10:13,246 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 200310-21:10:13,803 nipype.interface INFO: stdout 2020-03-10T21:10:13.803577: 200310-21:10:13,804 nipype.interface INFO: stdout 2020-03-10T21:10:13.803577:Matrix from LTA: 200310-21:10:13,804 nipype.interface INFO: stdout 2020-03-10T21:10:13.803577: 0.99954 -0.00099 -0.03045 -1.23425; 200310-21:10:13,804 nipype.interface INFO: stdout 2020-03-10T21:10:13.803577: 0.03025 0.15167 0.98797 -0.99895; 200310-21:10:13,804 nipype.interface INFO: stdout 2020-03-10T21:10:13.803577: 0.00364 -0.98843 0.15163 1.03905; 200310-21:10:13,804 nipype.interface INFO: stdout 2020-03-10T21:10:13.803577: 0.00000 0.00000 0.00000 1.00000; 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959: 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:movvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked.nii.gz 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:targvol /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:outvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/uni_xform_masked_warped.nii.gz 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:regfile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:invert 0 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:tal 0 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:talres 2 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:regheader 0 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:noresample 0 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:interp nearest (0) 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:precision float (3) 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:Gdiag_no -1 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:Synth 0 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:SynthSeed 1583965670 200310-21:10:14,555 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959: 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959:Final tkRAS-to-tkRAS Matrix is: 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959: 0.99954 -0.00099 -0.03045 -1.23425; 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959: 0.03025 0.15167 0.98797 -0.99892; 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959: 0.00364 -0.98843 0.15163 1.03903; 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.554959: 0.00000 0.00000 0.00000 1.00000; 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.556324: 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.556324: 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.556324:Vox2Vox Matrix is: 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.556324: 0.49977 -0.01522 0.00049 -13.46760; 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.556324: 0.00182 0.07582 0.49422 -25.71666; 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.556324:-0.01512 -0.49398 0.07584 92.45932; 200310-21:10:14,556 nipype.interface INFO: stdout 2020-03-10T21:10:14.556324: 0.00000 0.00000 0.00000 1.00000; 200310-21:10:15,26 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/compare_transforms". 200310-21:10:15,29 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 200310-21:10:15,61 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.compare_transforms". 200310-21:10:20,352 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat". 200310-21:10:20,356 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta out.lta 200310-21:10:20,397 nipype.interface INFO: stdout 2020-03-10T21:10:20.397577: 200310-21:10:20,397 nipype.interface INFO: stdout 2020-03-10T21:10:20.397577:Resampling 200310-21:10:20,397 nipype.interface INFO: stdout 2020-03-10T21:10:20.397577:Output registration matrix is identity 200310-21:10:20,397 nipype.interface INFO: stdout 2020-03-10T21:10:20.397577: 200310-21:10:20,397 nipype.interface INFO: stdout 2020-03-10T21:10:20.397577:mri_vol2vol done 200310-21:10:21,199 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta_concat". 200310-21:10:23,457 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 200310-21:10:23,461 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 200310-21:10:23,466 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 200310-21:10:23,469 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 200310-21:10:24,57 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 200310-21:10:24,70 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 200310-21:10:25,478 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 200310-21:10:25,482 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/applyrefined/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:10:25,488 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 200310-21:10:25,493 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/applyrefined/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:10:28,125 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 200310-21:10:28,210 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 200310-21:10:30,359 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm". 200310-21:10:30,366 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:11:18,982 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.mask_t1w_tfm". 200310-21:11:21,497 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.boldmask_to_t1w" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/boldmask_to_t1w". 200310-21:11:21,504 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:11:21,507 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-21:11:21,511 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200310-21:11:28,205 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-21:12:11,529 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.boldmask_to_t1w". 200310-21:12:27,34 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.mri_coreg". 200310-21:12:29,655 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.bbregister" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister". 200310-21:12:29,662 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.registration" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration". 200310-21:12:29,670 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 200310-21:12:29,677 nipype.workflow INFO: [Node] Running "bbregister" ("niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"), a CommandLine Interface with command: bbregister --t2 --6 --init-reg /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta --reg /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.dat --o /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg.nii.gz --mov /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz --s sub-CBPD0201 200310-21:12:45,531 nipype.interface INFO: stdout 2020-03-10T21:12:45.531804: 200310-21:12:45,532 nipype.interface INFO: stdout 2020-03-10T21:12:45.531804:Matrix from LTA: 200310-21:12:45,532 nipype.interface INFO: stdout 2020-03-10T21:12:45.531804: 0.99912 0.04155 -0.00652 0.08329; 200310-21:12:45,532 nipype.interface INFO: stdout 2020-03-10T21:12:45.531804: 0.00139 0.12228 0.99249 -0.01738; 200310-21:12:45,532 nipype.interface INFO: stdout 2020-03-10T21:12:45.531804: 0.04203 -0.99163 0.12212 1.97958; 200310-21:12:45,532 nipype.interface INFO: stdout 2020-03-10T21:12:45.531804: 0.00000 0.00000 0.00000 1.00000; 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977: 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:movvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:targvol /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:outvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:regfile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:invert 0 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:tal 0 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:talres 2 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:regheader 0 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:noresample 0 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:interp nearest (0) 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:precision float (3) 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:Gdiag_no -1 200310-21:12:46,428 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:Synth 0 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:SynthSeed 1584825802 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977: 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977:Final tkRAS-to-tkRAS Matrix is: 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977: 0.99912 0.04155 -0.00652 0.08328; 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977: 0.00139 0.12228 0.99249 -0.01738; 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977: 0.04203 -0.99163 0.12212 1.97957; 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.427977: 0.00000 0.00000 0.00000 1.00000; 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.429428: 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.429428: 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.429428:Vox2Vox Matrix is: 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.429428: 0.49956 -0.00326 -0.02077 -12.90892; 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.429428: 0.02102 0.06106 0.49581 -26.95937; 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.429428:-0.00070 -0.49625 0.06114 93.27373; 200310-21:12:46,429 nipype.interface INFO: stdout 2020-03-10T21:12:46.429428: 0.00000 0.00000 0.00000 1.00000; 200310-21:12:55,931 nipype.interface INFO: stdout 2020-03-10T21:12:55.931276: 200310-21:12:55,931 nipype.interface INFO: stdout 2020-03-10T21:12:55.931276:Resampling 200310-21:12:55,931 nipype.interface INFO: stdout 2020-03-10T21:12:55.931276:Output registration matrix is identity 200310-21:12:55,932 nipype.interface INFO: stdout 2020-03-10T21:12:55.931276: 200310-21:12:55,932 nipype.interface INFO: stdout 2020-03-10T21:12:55.931276:mri_vol2vol done 200310-21:17:23,84 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.bbregister". 200310-21:17:31,787 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 200310-21:17:31,790 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta --outlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 200310-21:17:31,795 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 200310-21:17:31,798 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 200310-21:17:32,944 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 200310-21:17:32,952 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 200310-21:17:35,815 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 200310-21:17:35,820 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 200310-21:17:35,822 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 200310-21:17:35,822 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 200310-21:17:35,823 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 200310-21:17:35,824 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 200310-21:17:35,824 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 200310-21:17:35,825 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 200310-21:17:37,792 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/compare_transforms". 200310-21:17:37,795 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 200310-21:17:37,802 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.compare_transforms". 200310-21:17:46,512 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat". 200310-21:17:46,517 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta out.lta 200310-21:17:47,773 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta_concat". 200310-21:17:50,67 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 200310-21:17:50,71 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 200310-21:17:50,77 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 200310-21:17:50,80 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 200310-21:17:51,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 200310-21:17:51,275 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 200310-21:17:54,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 200310-21:17:54,139 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/applyrefined/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:17:54,141 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 200310-21:17:54,145 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/applyrefined/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:17:59,81 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 200310-21:17:59,100 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 200310-21:18:03,758 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm". 200310-21:18:03,763 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:19:40,915 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.mask_t1w_tfm". 200310-21:19:43,313 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.boldmask_to_t1w" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/boldmask_to_t1w". 200310-21:19:43,320 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:19:43,377 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-21:19:43,380 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200310-21:19:55,736 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-21:21:23,745 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.boldmask_to_t1w". 200310-21:23:05,19 nipype.interface INFO: stdout 2020-03-10T21:23:05.019241: 200310-21:23:05,20 nipype.interface INFO: stdout 2020-03-10T21:23:05.019241:Matrix from LTA: 200310-21:23:05,20 nipype.interface INFO: stdout 2020-03-10T21:23:05.019241: 0.99952 -0.00405 -0.03076 -1.07712; 200310-21:23:05,20 nipype.interface INFO: stdout 2020-03-10T21:23:05.019241: 0.03102 0.14005 0.98966 -1.08290; 200310-21:23:05,20 nipype.interface INFO: stdout 2020-03-10T21:23:05.019241: 0.00030 -0.99014 0.14011 2.14151; 200310-21:23:05,20 nipype.interface INFO: stdout 2020-03-10T21:23:05.019241: 0.00000 0.00000 0.00000 1.00000; 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046: 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:movvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked.nii.gz 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:targvol /mnt/derivatives/freesurfer_t1/sub-CBPD0201/mri/brainmask.mgz 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:outvol /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_warped.nii.gz 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:regfile /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:invert 0 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:tal 0 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:talres 2 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:regheader 0 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:noresample 0 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:interp nearest (0) 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:precision float (3) 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:Gdiag_no -1 200310-21:23:06,630 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:Synth 0 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:SynthSeed 1584610530 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046: 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046:Final tkRAS-to-tkRAS Matrix is: 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046: 0.99952 -0.00405 -0.03076 -1.07713; 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046: 0.03102 0.14005 0.98966 -1.08287; 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046: 0.00030 -0.99014 0.14011 2.14151; 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.630046: 0.00000 0.00000 0.00000 1.00000; 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.631457: 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.631457: 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.631457:Vox2Vox Matrix is: 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.631457: 0.49976 -0.01538 0.00202 -13.72079; 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.631457: 0.00015 0.07005 0.49507 -25.42590; 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.631457:-0.01551 -0.49483 0.07002 93.31915; 200310-21:23:06,631 nipype.interface INFO: stdout 2020-03-10T21:23:06.631457: 0.00000 0.00000 0.00000 1.00000; 200310-21:23:18,817 nipype.interface INFO: stdout 2020-03-10T21:23:18.817813: 200310-21:23:18,818 nipype.interface INFO: stdout 2020-03-10T21:23:18.817813:Resampling 200310-21:23:18,818 nipype.interface INFO: stdout 2020-03-10T21:23:18.817813:Output registration matrix is identity 200310-21:23:18,818 nipype.interface INFO: stdout 2020-03-10T21:23:18.817813: 200310-21:23:18,818 nipype.interface INFO: stdout 2020-03-10T21:23:18.817813:mri_vol2vol done 200310-21:27:19,321 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.bbregister". 200310-21:27:28,316 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 200310-21:27:28,319 nipype.workflow INFO: [Node] Running "_lta_ras2ras0" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta --outlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0/out.lta 200310-21:27:28,370 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 200310-21:27:28,372 nipype.workflow INFO: [Node] Running "_lta_ras2ras1" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/mri_coreg/registration.lta --outlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1/out.lta 200310-21:27:29,437 nipype.workflow INFO: [Node] Finished "_lta_ras2ras0". 200310-21:27:29,439 nipype.workflow INFO: [Node] Finished "_lta_ras2ras1". 200310-21:27:32,333 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.lta_ras2ras" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras". 200310-21:27:32,338 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras0". 200310-21:27:32,339 nipype.workflow INFO: [Node] Cached "_lta_ras2ras0" - collecting precomputed outputs 200310-21:27:32,339 nipype.workflow INFO: [Node] "_lta_ras2ras0" found cached. 200310-21:27:32,340 nipype.workflow INFO: [Node] Setting-up "_lta_ras2ras1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_ras2ras/mapflow/_lta_ras2ras1". 200310-21:27:32,341 nipype.workflow INFO: [Node] Cached "_lta_ras2ras1" - collecting precomputed outputs 200310-21:27:32,341 nipype.workflow INFO: [Node] "_lta_ras2ras1" found cached. 200310-21:27:32,343 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.lta_ras2ras". 200310-21:27:34,350 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.compare_transforms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/compare_transforms". 200310-21:27:34,353 nipype.workflow INFO: [Node] Running "compare_transforms" ("nipype.interfaces.utility.wrappers.Function") 200310-21:27:34,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.compare_transforms". 200310-21:27:42,447 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.lta_concat" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat". 200310-21:27:42,451 nipype.workflow INFO: [Node] Running "lta_concat" ("niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"), a CommandLine Interface with command: mri_concatenate_lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-CBPD0201.lta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/fsnative2t1w_xfm/T1_robustreg.lta out.lta 200310-21:27:43,627 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.lta_concat". 200310-21:27:45,885 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv". 200310-21:27:45,889 nipype.workflow INFO: [Node] Running "lta2fsl_inv" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --invert --outfsl /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat 200310-21:27:45,895 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd". 200310-21:27:45,898 nipype.workflow INFO: [Node] Running "lta2fsl_fwd" ("niworkflows.interfaces.freesurfer.PatchedLTAConvert"), a CommandLine Interface with command: lta_convert --inlta /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat 200310-21:27:46,862 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_inv". 200310-21:27:46,867 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd". 200310-21:27:49,883 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv". 200310-21:27:49,887 nipype.workflow INFO: [Node] Running "fsl2itk_inv" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz -src /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/applyrefined/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_inv/out.mat -fsl2ras -oitk /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:27:49,893 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd". 200310-21:27:49,897 nipype.workflow INFO: [Node] Running "fsl2itk_fwd" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command: c3d_affine_tool -ref /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/applyrefined/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked.nii.gz -src /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat -fsl2ras -oitk /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:27:54,491 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_fwd". 200310-21:27:54,500 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_reg_wf.bbreg_wf.fsl2itk_inv". 200310-21:27:59,400 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.mask_t1w_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm". 200310-21:27:59,407 nipype.workflow INFO: [Node] Running "mask_t1w_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/gen_ref/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_reference.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:29:29,75 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.mask_t1w_tfm". 200310-21:29:30,935 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.boldmask_to_t1w" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/boldmask_to_t1w". 200310-21:29:30,939 nipype.workflow INFO: [Node] Running "boldmask_to_t1w" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200310-21:29:30,944 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 200310-21:29:30,948 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/mask_t1w_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200310-21:29:42,942 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200310-21:31:02,91 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.boldmask_to_t1w". 200310-21:31:46,315 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.t1w_dseg". 200310-21:32:39,84 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1w_dseg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/lut_t1w_dseg". 200310-21:32:39,87 nipype.workflow INFO: [Node] Running "lut_t1w_dseg" ("nipype.interfaces.utility.wrappers.Function") 200310-21:32:39,94 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.seg_rpt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_reports_wf/seg_rpt". 200310-21:32:39,99 nipype.workflow INFO: [Node] Running "seg_rpt" ("niworkflows.interfaces.masks.ROIsPlot") 200310-21:32:39,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.wm_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/wm_roi". 200310-21:32:39,108 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:32:39,114 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.csf_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/csf_roi". 200310-21:32:39,118 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:32:39,124 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/tpms_add_csf_wm". 200310-21:32:39,128 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 200310-21:32:39,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.wm_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/wm_roi". 200310-21:32:39,138 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:32:45,726 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lut_t1w_dseg". 200310-21:32:51,386 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.csf_roi". 200310-21:32:56,468 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tpms_add_csf_wm". 200310-21:33:21,677 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.csf_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/csf_roi". 200310-21:33:21,682 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:33:23,703 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tcc_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/tcc_tfm". 200310-21:33:23,708 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/csf_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:33:23,713 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.csf_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/csf_tfm". 200310-21:33:23,718 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/csf_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:33:27,487 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.csf_tfm". 200310-21:33:27,596 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tcc_tfm". 200310-21:33:29,567 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tcc_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/tcc_msk". 200310-21:33:29,571 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:33:29,582 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.csf_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/csf_msk". 200310-21:33:29,585 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:33:30,206 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.csf_msk". 200310-21:33:30,208 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tcc_msk". 200310-21:33:33,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.csf_roi". 200310-21:33:33,520 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tcompcor" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/tcompcor". 200310-21:33:33,525 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 200310-21:33:33,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acc_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/acc_roi". 200310-21:33:33,534 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:33:35,743 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tcc_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/tcc_tfm". 200310-21:33:35,750 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/csf_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:33:39,627 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tcc_tfm". 200310-21:33:41,818 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tcc_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/tcc_msk". 200310-21:33:41,821 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:33:42,418 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tcc_msk". 200310-21:33:45,899 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tcompcor" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/tcompcor". 200310-21:33:45,904 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 200310-21:33:55,306 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.wm_roi". 200310-21:33:56,408 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.wm_roi". 200310-21:33:57,837 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.wm_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/wm_tfm". 200310-21:33:57,842 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/wm_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:34:00,64 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.wm_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/wm_tfm". 200310-21:34:00,69 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/wm_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:34:01,745 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.wm_tfm". 200310-21:34:04,91 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.wm_tfm". 200310-21:34:04,143 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.wm_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/wm_msk". 200310-21:34:04,146 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:34:04,744 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.wm_msk". 200310-21:34:06,144 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.wm_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/wm_msk". 200310-21:34:06,147 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:34:06,714 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.wm_msk". 200310-21:34:10,258 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.csf_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/csf_tfm". 200310-21:34:10,263 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/csf_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:34:12,457 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.signals" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/signals". 200310-21:34:12,461 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 200310-21:34:15,316 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.csf_tfm". 200310-21:34:18,475 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.csf_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/csf_msk". 200310-21:34:18,478 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:34:19,92 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.csf_msk". 200310-21:34:24,656 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/tpms_add_csf_wm". 200310-21:34:24,659 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 200310-21:34:56,353 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acc_roi". 200310-21:34:58,776 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acc_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/acc_tfm". 200310-21:34:58,780 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/acc_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:35:07,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acc_tfm". 200310-21:35:10,814 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acc_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/acc_msk". 200310-21:35:10,817 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:35:11,474 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acc_msk". 200310-21:35:11,888 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tpms_add_csf_wm". 200310-21:35:16,707 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.signals" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/signals". 200310-21:35:16,713 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 200310-21:35:16,718 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acc_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/acc_roi". 200310-21:35:16,721 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:36:14,80 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.signals". 200310-21:36:17,96 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acompcor" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/acompcor". 200310-21:36:17,103 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 200310-21:36:18,729 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.signals". 200310-21:36:19,957 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tcompcor". 200310-21:36:20,976 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.wm_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/wm_roi". 200310-21:36:20,988 nipype.workflow INFO: [Node] Running "wm_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:36:23,145 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/tcc_metadata_fmt". 200310-21:36:23,148 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 200310-21:36:23,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.tcc_metadata_fmt". 200310-21:36:27,119 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.csf_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/csf_roi". 200310-21:36:27,122 nipype.workflow INFO: [Node] Running "csf_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:36:30,874 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tcompcor". 200310-21:36:33,109 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/tcc_metadata_fmt". 200310-21:36:33,113 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 200310-21:36:33,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.tcc_metadata_fmt". 200310-21:36:38,842 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.csf_roi". 200310-21:36:39,334 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tpms_add_csf_wm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/tpms_add_csf_wm". 200310-21:36:39,337 nipype.workflow INFO: [Node] Running "tpms_add_csf_wm" ("niworkflows.interfaces.utils.AddTPMs") 200310-21:36:41,452 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.rois_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/rois_plot". 200310-21:36:41,457 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 200310-21:36:54,555 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acc_roi". 200310-21:36:56,541 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tpms_add_csf_wm". 200310-21:36:57,428 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acc_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/acc_tfm". 200310-21:36:57,433 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/acc_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:36:59,665 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tcc_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/tcc_tfm". 200310-21:36:59,670 nipype.workflow INFO: [Node] Running "tcc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/csf_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_eroded.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_eroded_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:37:01,360 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acc_tfm". 200310-21:37:03,647 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tcc_tfm". 200310-21:37:03,753 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acc_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/acc_msk". 200310-21:37:03,756 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:37:04,308 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acc_msk". 200310-21:37:05,708 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tcc_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/tcc_msk". 200310-21:37:05,711 nipype.workflow INFO: [Node] Running "tcc_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:37:06,300 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tcc_msk". 200310-21:37:11,874 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.csf_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/csf_tfm". 200310-21:37:11,880 nipype.workflow INFO: [Node] Running "csf_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/csf_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:37:13,613 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acompcor". 200310-21:37:14,36 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.rois_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/rois_plot". 200310-21:37:14,43 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 200310-21:37:15,843 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.csf_tfm". 200310-21:37:18,240 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/acc_metadata_fmt". 200310-21:37:18,243 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 200310-21:37:19,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.acc_metadata_fmt". 200310-21:37:20,380 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.compcor_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/compcor_plot". 200310-21:37:20,383 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 200310-21:37:27,317 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.compcor_plot". 200310-21:37:30,980 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acompcor" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/acompcor". 200310-21:37:30,989 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 200310-21:37:35,59 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.wm_roi". 200310-21:37:39,822 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/conf_corr_plot". 200310-21:37:39,837 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 200310-21:37:41,206 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.model_expansion" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/model_expansion". 200310-21:37:41,215 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 200310-21:37:42,284 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.model_expansion". 200310-21:37:45,638 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.spike_regressors" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_confounds_wf/spike_regressors". 200310-21:37:45,640 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 200310-21:37:46,693 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.spike_regressors". 200310-21:37:56,691 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.wm_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/wm_tfm". 200310-21:37:56,696 nipype.workflow INFO: [Node] Running "wm_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/wm_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:38:00,724 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.wm_tfm". 200310-21:38:02,591 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acompcor". 200310-21:38:08,727 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/acc_metadata_fmt". 200310-21:38:08,731 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 200310-21:38:09,685 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.acc_metadata_fmt". 200310-21:38:12,684 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.wm_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/wm_msk". 200310-21:38:12,688 nipype.workflow INFO: [Node] Running "wm_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:38:13,352 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.wm_msk". 200310-21:38:14,703 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.compcor_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/compcor_plot". 200310-21:38:14,708 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 200310-21:38:22,731 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.compcor_plot". 200310-21:38:23,683 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/conf_corr_plot". 200310-21:38:23,692 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 200310-21:38:34,951 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.model_expansion" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/model_expansion". 200310-21:38:34,959 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 200310-21:38:37,143 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.model_expansion". 200310-21:38:41,91 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.spike_regressors" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_confounds_wf/spike_regressors". 200310-21:38:41,94 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 200310-21:38:42,120 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.spike_regressors". 200310-21:38:46,587 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.conf_corr_plot". 200310-21:38:52,26 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tcompcor" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/tcompcor". 200310-21:38:52,31 nipype.workflow INFO: [Node] Running "tcompcor" ("niworkflows.interfaces.patches.RobustTCompCor") 200310-21:38:58,677 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.csf_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/csf_msk". 200310-21:38:58,681 nipype.workflow INFO: [Node] Running "csf_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:38:59,239 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.csf_msk". 200310-21:39:04,861 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acc_roi" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/acc_roi". 200310-21:39:04,864 nipype.workflow INFO: [Node] Running "acc_roi" ("niworkflows.interfaces.utils.TPM2ROI") 200310-21:39:28,835 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.conf_corr_plot". 200310-21:39:31,390 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.signals" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/signals". 200310-21:39:31,394 nipype.workflow INFO: [Node] Running "signals" ("niworkflows.interfaces.images.SignalExtraction") 200310-21:39:47,614 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_confounds_wf.rois_plot". 200310-21:40:02,714 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_confounds_wf.rois_plot". 200310-21:40:05,399 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tcompcor". 200310-21:40:09,265 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tcc_metadata_fmt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/tcc_metadata_fmt". 200310-21:40:09,269 nipype.workflow INFO: [Node] Running "tcc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 200310-21:40:09,515 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.tcc_metadata_fmt". 200310-21:40:14,288 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acc_roi". 200310-21:40:15,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.signals". 200310-21:40:16,808 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acc_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/acc_tfm". 200310-21:40:16,815 nipype.workflow INFO: [Node] Running "acc_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/acc_roi/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi.nii.gz --interpolation NearestNeighbor --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_tpmsum_roi_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt 200310-21:40:20,193 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acc_tfm". 200310-21:40:22,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acc_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/acc_msk". 200310-21:40:22,831 nipype.workflow INFO: [Node] Running "acc_msk" ("nipype.interfaces.utility.wrappers.Function") 200310-21:40:23,282 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acc_msk". 200310-21:40:31,777 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.rois_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/rois_plot". 200310-21:40:31,782 nipype.workflow INFO: [Node] Running "rois_plot" ("niworkflows.interfaces.masks.ROIsPlot") 200310-21:40:31,790 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acompcor" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/acompcor". 200310-21:40:31,795 nipype.workflow INFO: [Node] Running "acompcor" ("niworkflows.interfaces.patches.RobustACompCor") 200310-21:41:08,110 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acompcor". 200310-21:41:11,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acc_metadata_fmt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/acc_metadata_fmt". 200310-21:41:11,737 nipype.workflow INFO: [Node] Running "acc_metadata_fmt" ("niworkflows.interfaces.utils.TSV2JSON") 200310-21:41:12,518 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.acc_metadata_fmt". 200310-21:41:16,950 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.compcor_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/compcor_plot". 200310-21:41:16,953 nipype.workflow INFO: [Node] Running "compcor_plot" ("niworkflows.interfaces.plotting.CompCorVariancePlot") 200310-21:41:22,938 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.conf_corr_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/conf_corr_plot". 200310-21:41:22,946 nipype.workflow INFO: [Node] Running "conf_corr_plot" ("niworkflows.interfaces.plotting.ConfoundsCorrelationPlot") 200310-21:41:22,947 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.model_expansion" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/model_expansion". 200310-21:41:22,955 nipype.workflow INFO: [Node] Running "model_expansion" ("niworkflows.interfaces.confounds.ExpandModel") 200310-21:41:23,893 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.compcor_plot". 200310-21:41:25,22 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.model_expansion". 200310-21:41:35,113 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.spike_regressors" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_confounds_wf/spike_regressors". 200310-21:41:35,117 nipype.workflow INFO: [Node] Running "spike_regressors" ("niworkflows.interfaces.confounds.SpikeRegressors") 200310-21:41:36,56 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.spike_regressors". 200310-21:42:29,554 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.conf_corr_plot". 200310-21:43:15,372 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_confounds_wf.rois_plot". 200310-21:49:46,924 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.seg_rpt". 200310-23:57:16,510 nipype.workflow INFO: [Node] Finished "_midthickness1". 200310-23:59:26,455 nipype.workflow INFO: [Node] Finished "_midthickness0". 200310-23:59:29,392 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.registration" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration". 200310-23:59:29,399 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 200311-03:21:10,112 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.registration". 200311-03:21:17,33 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_mask". 200311-03:21:17,40 nipype.workflow INFO: [Node] Running "std_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/refine/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-03:21:17,53 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/tpl_moving". 200311-03:21:17,59 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-03:21:17,209 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_dseg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_dseg". 200311-03:21:17,216 nipype.workflow INFO: [Node] Running "std_dseg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-03:21:17,309 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness". 200311-03:21:17,314 nipype.workflow INFO: [Node] Setting-up "_midthickness0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0". 200311-03:21:17,315 nipype.workflow INFO: [Node] Cached "_midthickness0" - collecting precomputed outputs 200311-03:21:17,315 nipype.workflow INFO: [Node] "_midthickness0" found cached. 200311-03:21:17,316 nipype.workflow INFO: [Node] Setting-up "_midthickness1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1". 200311-03:21:17,318 nipype.workflow INFO: [Node] Cached "_midthickness1" - collecting precomputed outputs 200311-03:21:17,318 nipype.workflow INFO: [Node] "_midthickness1" found cached. 200311-03:21:17,334 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness". 200311-03:21:19,36 nipype.workflow INFO: [Node] Setting-up "_std_tpms0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_tpms/mapflow/_std_tpms0". 200311-03:21:19,39 nipype.workflow INFO: [Node] Setting-up "_std_tpms1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_tpms/mapflow/_std_tpms1". 200311-03:21:19,42 nipype.workflow INFO: [Node] Running "_std_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-03:21:19,45 nipype.workflow INFO: [Node] Running "_std_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-03:21:19,56 nipype.workflow INFO: [Node] Setting-up "_std_tpms2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_tpms/mapflow/_std_tpms2". 200311-03:21:19,59 nipype.workflow INFO: [Node] Running "_std_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-03:21:20,903 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/save_midthickness". 200311-03:21:20,908 nipype.workflow INFO: [Node] Running "save_midthickness" ("nipype.interfaces.io.DataSink") 200311-03:21:21,793 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness". 200311-03:21:31,684 nipype.workflow INFO: [Node] Setting-up "_fs2gii0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii0". 200311-03:21:31,687 nipype.workflow INFO: [Node] Running "_fs2gii0" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer_t1/sub-CBPD0201/surf/lh.smoothwm /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii0/lh.smoothwm_converted.gii 200311-03:21:31,695 nipype.workflow INFO: [Node] Setting-up "_fs2gii1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii1". 200311-03:21:31,698 nipype.workflow INFO: [Node] Running "_fs2gii1" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer_t1/sub-CBPD0201/surf/rh.smoothwm /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii1/rh.smoothwm_converted.gii 200311-03:22:02,350 nipype.workflow INFO: [Node] Finished "_fs2gii0". 200311-03:22:02,359 nipype.workflow INFO: [Node] Finished "_fs2gii1". 200311-03:22:05,756 nipype.workflow INFO: [Node] Setting-up "_fs2gii2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii2". 200311-03:22:05,759 nipype.workflow INFO: [Node] Running "_fs2gii2" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer_t1/sub-CBPD0201/surf/lh.pial /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii2/lh.pial_converted.gii 200311-03:22:05,767 nipype.workflow INFO: [Node] Setting-up "_fs2gii3" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii3". 200311-03:22:05,770 nipype.workflow INFO: [Node] Running "_fs2gii3" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer_t1/sub-CBPD0201/surf/rh.pial /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii3/rh.pial_converted.gii 200311-03:22:35,892 nipype.workflow INFO: [Node] Finished "_fs2gii2". 200311-03:22:35,934 nipype.workflow INFO: [Node] Finished "_fs2gii3". 200311-03:22:39,847 nipype.workflow INFO: [Node] Setting-up "_fs2gii4" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii4". 200311-03:22:39,850 nipype.workflow INFO: [Node] Running "_fs2gii4" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer_t1/sub-CBPD0201/surf/lh.inflated /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii4/lh.inflated_converted.gii 200311-03:22:39,870 nipype.workflow INFO: [Node] Setting-up "_fs2gii5" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii5". 200311-03:22:39,872 nipype.workflow INFO: [Node] Running "_fs2gii5" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer_t1/sub-CBPD0201/surf/rh.inflated /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii5/rh.inflated_converted.gii 200311-03:23:09,863 nipype.workflow INFO: [Node] Finished "_fs2gii4". 200311-03:23:09,880 nipype.workflow INFO: [Node] Finished "_fs2gii5". 200311-03:23:11,907 nipype.workflow INFO: [Node] Setting-up "_fs2gii6" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii6". 200311-03:23:11,910 nipype.workflow INFO: [Node] Running "_fs2gii6" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer_t1/sub-CBPD0201/surf/lh.midthickness /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii6/lh.midthickness_converted.gii 200311-03:23:14,327 nipype.workflow INFO: [Node] Setting-up "_fs2gii7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii7". 200311-03:23:14,329 nipype.workflow INFO: [Node] Running "_fs2gii7" ("nipype.interfaces.freesurfer.utils.MRIsConvert"), a CommandLine Interface with command: mris_convert /mnt/derivatives/freesurfer_t1/sub-CBPD0201/surf/rh.midthickness /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii7/rh.midthickness_converted.gii 200311-03:23:41,953 nipype.workflow INFO: [Node] Finished "_fs2gii6". 200311-03:23:44,396 nipype.workflow INFO: [Node] Finished "_fs2gii7". 200311-03:23:46,774 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs2gii" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii". 200311-03:23:46,780 nipype.workflow INFO: [Node] Setting-up "_fs2gii0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii0". 200311-03:23:46,781 nipype.workflow INFO: [Node] Cached "_fs2gii0" - collecting precomputed outputs 200311-03:23:46,781 nipype.workflow INFO: [Node] "_fs2gii0" found cached. 200311-03:23:46,783 nipype.workflow INFO: [Node] Setting-up "_fs2gii1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii1". 200311-03:23:46,784 nipype.workflow INFO: [Node] Cached "_fs2gii1" - collecting precomputed outputs 200311-03:23:46,784 nipype.workflow INFO: [Node] "_fs2gii1" found cached. 200311-03:23:46,785 nipype.workflow INFO: [Node] Setting-up "_fs2gii2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii2". 200311-03:23:46,816 nipype.workflow INFO: [Node] Cached "_fs2gii2" - collecting precomputed outputs 200311-03:23:46,816 nipype.workflow INFO: [Node] "_fs2gii2" found cached. 200311-03:23:46,817 nipype.workflow INFO: [Node] Setting-up "_fs2gii3" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii3". 200311-03:23:46,818 nipype.workflow INFO: [Node] Cached "_fs2gii3" - collecting precomputed outputs 200311-03:23:46,818 nipype.workflow INFO: [Node] "_fs2gii3" found cached. 200311-03:23:46,881 nipype.workflow INFO: [Node] Setting-up "_fs2gii4" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii4". 200311-03:23:46,883 nipype.workflow INFO: [Node] Cached "_fs2gii4" - collecting precomputed outputs 200311-03:23:46,883 nipype.workflow INFO: [Node] "_fs2gii4" found cached. 200311-03:23:46,884 nipype.workflow INFO: [Node] Setting-up "_fs2gii5" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii5". 200311-03:23:46,885 nipype.workflow INFO: [Node] Cached "_fs2gii5" - collecting precomputed outputs 200311-03:23:46,885 nipype.workflow INFO: [Node] "_fs2gii5" found cached. 200311-03:23:46,943 nipype.workflow INFO: [Node] Setting-up "_fs2gii6" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii6". 200311-03:23:46,944 nipype.workflow INFO: [Node] Cached "_fs2gii6" - collecting precomputed outputs 200311-03:23:46,944 nipype.workflow INFO: [Node] "_fs2gii6" found cached. 200311-03:23:46,946 nipype.workflow INFO: [Node] Setting-up "_fs2gii7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fs2gii/mapflow/_fs2gii7". 200311-03:23:47,8 nipype.workflow INFO: [Node] Cached "_fs2gii7" - collecting precomputed outputs 200311-03:23:47,8 nipype.workflow INFO: [Node] "_fs2gii7" found cached. 200311-03:23:47,11 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs2gii". 200311-03:23:53,457 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 200311-03:23:53,459 nipype.workflow INFO: [Node] Running "_fix_surfs0" ("niworkflows.interfaces.surf.NormalizeSurf") 200311-03:23:53,467 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 200311-03:23:53,469 nipype.workflow INFO: [Node] Running "_fix_surfs1" ("niworkflows.interfaces.surf.NormalizeSurf") 200311-03:24:00,612 nipype.workflow INFO: [Node] Finished "_fix_surfs1". 200311-03:24:00,631 nipype.workflow INFO: [Node] Finished "_fix_surfs0". 200311-03:24:03,515 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 200311-03:24:03,516 nipype.workflow INFO: [Node] Running "_fix_surfs2" ("niworkflows.interfaces.surf.NormalizeSurf") 200311-03:24:03,529 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 200311-03:24:03,530 nipype.workflow INFO: [Node] Running "_fix_surfs3" ("niworkflows.interfaces.surf.NormalizeSurf") 200311-03:24:10,627 nipype.workflow INFO: [Node] Finished "_fix_surfs2". 200311-03:24:10,734 nipype.workflow INFO: [Node] Finished "_fix_surfs3". 200311-03:24:13,575 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 200311-03:24:13,577 nipype.workflow INFO: [Node] Running "_fix_surfs4" ("niworkflows.interfaces.surf.NormalizeSurf") 200311-03:24:13,590 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 200311-03:24:13,592 nipype.workflow INFO: [Node] Running "_fix_surfs5" ("niworkflows.interfaces.surf.NormalizeSurf") 200311-03:24:20,727 nipype.workflow INFO: [Node] Finished "_fix_surfs4". 200311-03:24:20,857 nipype.workflow INFO: [Node] Finished "_fix_surfs5". 200311-03:24:23,640 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 200311-03:24:23,642 nipype.workflow INFO: [Node] Running "_fix_surfs6" ("niworkflows.interfaces.surf.NormalizeSurf") 200311-03:24:23,650 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 200311-03:24:23,652 nipype.workflow INFO: [Node] Running "_fix_surfs7" ("niworkflows.interfaces.surf.NormalizeSurf") 200311-03:24:30,811 nipype.workflow INFO: [Node] Finished "_fix_surfs6". 200311-03:24:30,860 nipype.workflow INFO: [Node] Finished "_fix_surfs7". 200311-03:24:33,713 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs". 200311-03:24:33,717 nipype.workflow INFO: [Node] Setting-up "_fix_surfs0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs0". 200311-03:24:33,718 nipype.workflow INFO: [Node] Cached "_fix_surfs0" - collecting precomputed outputs 200311-03:24:33,718 nipype.workflow INFO: [Node] "_fix_surfs0" found cached. 200311-03:24:33,719 nipype.workflow INFO: [Node] Setting-up "_fix_surfs1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs1". 200311-03:24:33,720 nipype.workflow INFO: [Node] Cached "_fix_surfs1" - collecting precomputed outputs 200311-03:24:33,720 nipype.workflow INFO: [Node] "_fix_surfs1" found cached. 200311-03:24:33,721 nipype.workflow INFO: [Node] Setting-up "_fix_surfs2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs2". 200311-03:24:33,722 nipype.workflow INFO: [Node] Cached "_fix_surfs2" - collecting precomputed outputs 200311-03:24:33,722 nipype.workflow INFO: [Node] "_fix_surfs2" found cached. 200311-03:24:33,723 nipype.workflow INFO: [Node] Setting-up "_fix_surfs3" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs3". 200311-03:24:33,736 nipype.workflow INFO: [Node] Cached "_fix_surfs3" - collecting precomputed outputs 200311-03:24:33,736 nipype.workflow INFO: [Node] "_fix_surfs3" found cached. 200311-03:24:33,737 nipype.workflow INFO: [Node] Setting-up "_fix_surfs4" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs4". 200311-03:24:33,738 nipype.workflow INFO: [Node] Cached "_fix_surfs4" - collecting precomputed outputs 200311-03:24:33,738 nipype.workflow INFO: [Node] "_fix_surfs4" found cached. 200311-03:24:33,739 nipype.workflow INFO: [Node] Setting-up "_fix_surfs5" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs5". 200311-03:24:33,740 nipype.workflow INFO: [Node] Cached "_fix_surfs5" - collecting precomputed outputs 200311-03:24:33,740 nipype.workflow INFO: [Node] "_fix_surfs5" found cached. 200311-03:24:33,799 nipype.workflow INFO: [Node] Setting-up "_fix_surfs6" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs6". 200311-03:24:33,800 nipype.workflow INFO: [Node] Cached "_fix_surfs6" - collecting precomputed outputs 200311-03:24:33,800 nipype.workflow INFO: [Node] "_fix_surfs6" found cached. 200311-03:24:33,801 nipype.workflow INFO: [Node] Setting-up "_fix_surfs7" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/fix_surfs/mapflow/_fix_surfs7". 200311-03:24:33,801 nipype.workflow INFO: [Node] Cached "_fix_surfs7" - collecting precomputed outputs 200311-03:24:33,802 nipype.workflow INFO: [Node] "_fix_surfs7" found cached. 200311-03:24:33,865 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs". 200311-03:29:07,145 nipype.workflow INFO: [Node] Finished "_std_tpms0". 200311-03:29:08,565 nipype.workflow INFO: [Node] Finished "_std_tpms1". 200311-03:29:09,878 nipype.workflow INFO: [Node] Finished "_std_tpms2". 200311-03:29:12,217 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_tpms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_tpms". 200311-03:29:12,223 nipype.workflow INFO: [Node] Setting-up "_std_tpms0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_tpms/mapflow/_std_tpms0". 200311-03:29:12,224 nipype.workflow INFO: [Node] Cached "_std_tpms0" - collecting precomputed outputs 200311-03:29:12,224 nipype.workflow INFO: [Node] "_std_tpms0" found cached. 200311-03:29:12,226 nipype.workflow INFO: [Node] Setting-up "_std_tpms1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_tpms/mapflow/_std_tpms1". 200311-03:29:12,227 nipype.workflow INFO: [Node] Cached "_std_tpms1" - collecting precomputed outputs 200311-03:29:12,227 nipype.workflow INFO: [Node] "_std_tpms1" found cached. 200311-03:29:12,257 nipype.workflow INFO: [Node] Setting-up "_std_tpms2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/std_tpms/mapflow/_std_tpms2". 200311-03:29:12,259 nipype.workflow INFO: [Node] Cached "_std_tpms2" - collecting precomputed outputs 200311-03:29:12,259 nipype.workflow INFO: [Node] "_std_tpms2" found cached. 200311-03:29:12,260 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_tpms". 200311-03:31:59,750 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 200311-03:44:08,608 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_mask". 200311-03:44:16,957 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_reports_wf/_template_MNI152NLin6Asym/norm_msk". 200311-03:44:16,963 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 200311-03:44:30,610 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_msk". 200311-03:44:32,308 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_rpt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_reports_wf/_template_MNI152NLin6Asym/norm_rpt". 200311-03:44:32,310 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 200311-03:45:38,970 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_dseg". 200311-03:45:42,366 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lut_std_dseg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin6Asym/lut_std_dseg". 200311-03:45:42,369 nipype.workflow INFO: [Node] Running "lut_std_dseg" ("nipype.interfaces.utility.wrappers.Function") 200311-03:45:44,771 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lut_std_dseg". 200311-03:46:06,329 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_rpt". 200311-03:46:09,399 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.registration" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration". 200311-03:46:09,406 nipype.workflow INFO: [Node] Running "registration" ("niworkflows.interfaces.mni.RobustMNINormalization") 200311-08:35:57,2 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.registration". 200311-08:36:04,552 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_mask". 200311-08:36:04,562 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/tpl_moving". 200311-08:36:04,568 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-08:36:04,753 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_dseg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_dseg". 200311-08:36:04,760 nipype.workflow INFO: [Node] Running "std_dseg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-08:36:06,353 nipype.workflow INFO: [Node] Setting-up "_std_tpms0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_tpms/mapflow/_std_tpms0". 200311-08:36:06,356 nipype.workflow INFO: [Node] Running "_std_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-08:36:06,363 nipype.workflow INFO: [Node] Setting-up "_std_tpms1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_tpms/mapflow/_std_tpms1". 200311-08:36:06,366 nipype.workflow INFO: [Node] Running "_std_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-08:36:06,373 nipype.workflow INFO: [Node] Setting-up "_std_tpms2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_tpms/mapflow/_std_tpms2". 200311-08:36:06,376 nipype.workflow INFO: [Node] Running "_std_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-08:36:07,287 nipype.workflow INFO: [Node] Running "std_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/refine/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-08:44:49,895 nipype.workflow INFO: [Node] Finished "_std_tpms2". 200311-08:44:50,66 nipype.workflow INFO: [Node] Finished "_std_tpms0". 200311-08:44:53,853 nipype.workflow INFO: [Node] Finished "_std_tpms1". 200311-08:44:55,661 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_tpms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_tpms". 200311-08:44:55,667 nipype.workflow INFO: [Node] Setting-up "_std_tpms0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_tpms/mapflow/_std_tpms0". 200311-08:44:55,668 nipype.workflow INFO: [Node] Cached "_std_tpms0" - collecting precomputed outputs 200311-08:44:55,669 nipype.workflow INFO: [Node] "_std_tpms0" found cached. 200311-08:44:55,670 nipype.workflow INFO: [Node] Setting-up "_std_tpms1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_tpms/mapflow/_std_tpms1". 200311-08:44:55,671 nipype.workflow INFO: [Node] Cached "_std_tpms1" - collecting precomputed outputs 200311-08:44:55,671 nipype.workflow INFO: [Node] "_std_tpms1" found cached. 200311-08:44:55,677 nipype.workflow INFO: [Node] Setting-up "_std_tpms2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/std_tpms/mapflow/_std_tpms2". 200311-08:44:55,679 nipype.workflow INFO: [Node] Cached "_std_tpms2" - collecting precomputed outputs 200311-08:44:55,679 nipype.workflow INFO: [Node] "_std_tpms2" found cached. 200311-08:44:55,680 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_tpms". 200311-08:48:37,70 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 200311-09:04:22,826 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_mask". 200311-09:04:33,528 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_reports_wf/_template_MNIPediatricAsymcohort-2/norm_msk". 200311-09:04:33,534 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 200311-09:04:47,368 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_msk". 200311-09:04:48,883 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_rpt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_reports_wf/_template_MNIPediatricAsymcohort-2/norm_rpt". 200311-09:04:48,887 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 200311-09:05:55,213 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_dseg". 200311-09:05:56,946 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lut_std_dseg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNIPediatricAsymcohort-2/lut_std_dseg". 200311-09:05:56,948 nipype.workflow INFO: [Node] Running "lut_std_dseg" ("nipype.interfaces.utility.wrappers.Function") 200311-09:05:59,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lut_std_dseg". 200311-09:06:21,697 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_rpt". 200311-09:06:27,456 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_to_t1w_transform". 200311-09:06:27,796 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-09:27:47,145 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_to_t1w_transform". 200311-09:27:50,329 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/merge". 200311-09:27:50,695 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-09:30:56,164 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.merge". 200311-09:33:45,224 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/validate". 200311-09:33:45,227 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-09:33:45,231 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.validate". 200311-09:33:46,542 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 200311-09:33:46,545 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-09:33:56,770 nipype.interface INFO: stderr 2020-03-11T09:33:56.770173:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-09:33:56,770 nipype.interface INFO: stderr 2020-03-11T09:33:56.770674:++ Authored by: RW Cox 200311-09:33:56,771 nipype.interface INFO: stderr 2020-03-11T09:33:56.771396:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 200311-09:33:56,771 nipype.interface INFO: stderr 2020-03-11T09:33:56.771539: Warnings of this type will be muted for this session. 200311-09:33:56,771 nipype.interface INFO: stderr 2020-03-11T09:33:56.771539: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-09:33:56,772 nipype.interface INFO: stderr 2020-03-11T09:33:56.772676:++ Coarse del was 10, replaced with 7 200311-09:40:20,698 nipype.interface INFO: stderr 2020-03-11T09:40:20.698320:++ Max displacement in automask = 0.22 (mm) at sub-brick 9 200311-09:40:20,700 nipype.interface INFO: stderr 2020-03-11T09:40:20.700734:++ Max delta displ in automask = 0.24 (mm) at sub-brick 16 200311-09:40:39,798 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 200311-09:40:45,233 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_to_t1w_transform". 200311-09:40:45,507 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-09:56:35,649 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_to_t1w_transform". 200311-09:56:37,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200311-09:56:37,446 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/merge". 200311-09:56:37,653 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-09:56:37,984 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-09:57:42,297 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-09:57:47,747 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200311-09:57:47,751 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-09:58:07,993 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-09:58:11,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200311-09:58:11,138 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-09:58:46,394 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-09:58:49,134 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200311-09:58:49,138 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-09:58:50,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-09:58:53,138 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200311-09:58:53,142 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200311-09:59:11,765 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.merge". 200311-09:59:42,345 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-10:01:17,633 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/validate". 200311-10:01:17,636 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-10:01:17,640 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.validate". 200311-10:01:18,821 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200311-10:01:18,825 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-10:01:18,831 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 200311-10:01:18,834 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-10:01:19,610 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-10:01:20,883 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200311-10:01:20,886 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200311-10:01:23,505 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-10:01:24,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200311-10:01:24,872 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-10:01:25,63 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-10:01:26,882 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200311-10:01:26,887 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-10:01:27,981 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-10:01:28,282 nipype.interface INFO: stderr 2020-03-11T10:01:28.282064:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-10:01:28,286 nipype.interface INFO: stderr 2020-03-11T10:01:28.286678:++ Authored by: RW Cox 200311-10:01:28,287 nipype.interface INFO: stderr 2020-03-11T10:01:28.287340:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 200311-10:01:28,287 nipype.interface INFO: stderr 2020-03-11T10:01:28.287482: Warnings of this type will be muted for this session. 200311-10:01:28,287 nipype.interface INFO: stderr 2020-03-11T10:01:28.287482: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-10:01:28,288 nipype.interface INFO: stderr 2020-03-11T10:01:28.288529:++ Coarse del was 10, replaced with 7 200311-10:01:30,868 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200311-10:01:30,872 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200311-10:01:32,394 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-10:07:45,680 nipype.interface INFO: stderr 2020-03-11T10:07:45.680673:++ Max displacement in automask = 0.20 (mm) at sub-brick 12 200311-10:07:45,683 nipype.interface INFO: stderr 2020-03-11T10:07:45.682988:++ Max delta displ in automask = 0.19 (mm) at sub-brick 9 200311-10:08:10,42 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 200311-10:08:15,880 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_to_t1w_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_to_t1w_transform". 200311-10:08:16,150 nipype.workflow INFO: [Node] Running "bold_to_t1w_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-10:23:30,189 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_to_t1w_transform". 200311-10:23:32,332 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200311-10:23:32,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/merge". 200311-10:23:32,643 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-10:23:33,71 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-10:24:44,267 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-10:24:50,391 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200311-10:24:50,395 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-10:25:10,589 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-10:25:13,772 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200311-10:25:13,776 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-10:25:49,305 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-10:25:51,780 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200311-10:25:51,784 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-10:25:53,512 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-10:25:55,783 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200311-10:25:55,787 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200311-10:26:08,917 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.merge". 200311-10:26:44,646 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-10:28:06,988 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/validate". 200311-10:28:06,991 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-10:28:06,995 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.validate". 200311-10:28:08,336 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200311-10:28:08,339 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-10:28:08,346 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref". 200311-10:28:08,349 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-10:28:09,252 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-10:28:12,227 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200311-10:28:12,230 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200311-10:28:15,73 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-10:28:18,394 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200311-10:28:18,397 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-10:28:18,524 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-10:28:18,604 nipype.interface INFO: stderr 2020-03-11T10:28:18.604354:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-10:28:18,611 nipype.interface INFO: stderr 2020-03-11T10:28:18.611677:++ Authored by: RW Cox 200311-10:28:18,612 nipype.interface INFO: stderr 2020-03-11T10:28:18.612307:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32 200311-10:28:18,612 nipype.interface INFO: stderr 2020-03-11T10:28:18.612454: Warnings of this type will be muted for this session. 200311-10:28:18,612 nipype.interface INFO: stderr 2020-03-11T10:28:18.612454: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-10:28:18,613 nipype.interface INFO: stderr 2020-03-11T10:28:18.613494:++ Coarse del was 10, replaced with 7 200311-10:28:19,405 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200311-10:28:19,409 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-10:28:19,790 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-10:28:21,959 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200311-10:28:21,963 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200311-10:28:23,602 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-10:34:36,815 nipype.interface INFO: stderr 2020-03-11T10:34:36.815649:++ Max displacement in automask = 0.13 (mm) at sub-brick 2 200311-10:34:36,860 nipype.interface INFO: stderr 2020-03-11T10:34:36.860672:++ Max delta displ in automask = 0.13 (mm) at sub-brick 2 200311-10:35:00,855 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.gen_ref". 200311-10:35:06,555 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 200311-10:35:07,227 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-10:36:11,215 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-10:36:15,987 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 200311-10:36:15,991 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-10:36:33,557 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-10:36:35,253 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 200311-10:36:35,256 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-10:37:08,259 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-10:37:11,126 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 200311-10:37:11,131 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-10:37:12,543 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-10:37:15,130 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 200311-10:37:15,134 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 200311-10:37:56,464 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-10:37:59,147 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 200311-10:37:59,150 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-10:37:59,842 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-10:38:01,136 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 200311-10:38:01,139 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 200311-10:38:03,460 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-10:38:05,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 200311-10:38:05,152 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-10:38:05,323 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-10:38:07,61 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 200311-10:38:07,65 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-10:38:07,894 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-10:38:09,11 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 200311-10:38:09,14 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_t1_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 200311-10:38:10,185 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-11:15:27,662 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.registration". 200311-11:15:30,844 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_mask". 200311-11:15:30,850 nipype.workflow INFO: [Node] Running "std_mask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/refine/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask.nii.gz --interpolation MultiLabel --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_rbrainmask_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:15:30,856 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.tpl_moving" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/tpl_moving". 200311-11:15:30,862 nipype.workflow INFO: [Node] Running "tpl_moving" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/brain_extraction_wf/copy_xform/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform.nii.gz --interpolation LanczosWindowedSinc --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:15:30,893 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_dseg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_dseg". 200311-11:15:30,899 nipype.workflow INFO: [Node] Running "std_dseg" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_seg.nii.gz --interpolation MultiLabel --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_seg_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:15:31,501 nipype.workflow INFO: [Node] Setting-up "_std_tpms0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_tpms/mapflow/_std_tpms0". 200311-11:15:31,505 nipype.workflow INFO: [Node] Running "_std_tpms0" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_0_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:15:31,512 nipype.workflow INFO: [Node] Setting-up "_std_tpms1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_tpms/mapflow/_std_tpms1". 200311-11:15:31,515 nipype.workflow INFO: [Node] Running "_std_tpms1" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_1.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_1_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:15:31,522 nipype.workflow INFO: [Node] Setting-up "_std_tpms2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_tpms/mapflow/_std_tpms2". 200311-11:15:31,525 nipype.workflow INFO: [Node] Running "_std_tpms2" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/t1w_dseg/sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2.nii.gz --interpolation Gaussian --output sub-CBPD0201_ses-01_run-01_T1w_corrected_xform_masked_prob_2_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:19:25,973 nipype.workflow INFO: [Node] Finished "_std_tpms2". 200311-11:19:27,556 nipype.workflow INFO: [Node] Finished "_std_tpms0". 200311-11:19:28,391 nipype.workflow INFO: [Node] Finished "_std_tpms1". 200311-11:19:29,614 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_tpms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_tpms". 200311-11:19:29,619 nipype.workflow INFO: [Node] Setting-up "_std_tpms0" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_tpms/mapflow/_std_tpms0". 200311-11:19:29,621 nipype.workflow INFO: [Node] Cached "_std_tpms0" - collecting precomputed outputs 200311-11:19:29,621 nipype.workflow INFO: [Node] "_std_tpms0" found cached. 200311-11:19:29,622 nipype.workflow INFO: [Node] Setting-up "_std_tpms1" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_tpms/mapflow/_std_tpms1". 200311-11:19:29,623 nipype.workflow INFO: [Node] Cached "_std_tpms1" - collecting precomputed outputs 200311-11:19:29,624 nipype.workflow INFO: [Node] "_std_tpms1" found cached. 200311-11:19:29,630 nipype.workflow INFO: [Node] Setting-up "_std_tpms2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_tpms/mapflow/_std_tpms2". 200311-11:19:29,631 nipype.workflow INFO: [Node] Cached "_std_tpms2" - collecting precomputed outputs 200311-11:19:29,631 nipype.workflow INFO: [Node] "_std_tpms2" found cached. 200311-11:19:29,633 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_tpms". 200311-11:20:29,766 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.tpl_moving". 200311-11:23:52,850 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_mask". 200311-11:23:55,975 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_msk" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_reports_wf/_template_MNI152NLin2009cAsym/norm_msk". 200311-11:23:56,73 nipype.workflow INFO: [Node] Running "norm_msk" ("nipype.interfaces.utility.wrappers.Function") 200311-11:23:59,169 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_msk". 200311-11:24:00,424 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_rpt" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_reports_wf/_template_MNI152NLin2009cAsym/norm_rpt". 200311-11:24:00,427 nipype.workflow INFO: [Node] Running "norm_rpt" ("niworkflows.interfaces.registration.SimpleBeforeAfterRPT") 200311-11:24:05,894 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.std_dseg". 200311-11:24:06,429 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.outputnode" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/outputnode". 200311-11:24:06,442 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lut_std_dseg" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_derivatives_wf/_template_MNI152NLin2009cAsym/lut_std_dseg". 200311-11:24:06,445 nipype.workflow INFO: [Node] Running "lut_std_dseg" ("nipype.interfaces.utility.wrappers.Function") 200311-11:24:06,471 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 200311-11:24:06,489 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_norm_wf.outputnode". 200311-11:24:06,956 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_derivatives_wf.lut_std_dseg". 200311-11:24:16,523 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./aparc_std_tfm". 200311-11:24:16,529 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:24:16,536 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./aseg_std_tfm". 200311-11:24:16,542 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:24:17,721 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/aparc_std_tfm". 200311-11:24:17,728 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-11:24:17,752 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/aseg_std_tfm". 200311-11:24:17,758 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-11:24:18,362 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.anat_preproc_wf.anat_reports_wf.norm_rpt". 200311-11:24:19,347 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./aparc_std_tfm". 200311-11:24:19,353 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-11:24:19,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./aseg_std_tfm". 200311-11:24:19,360 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-11:24:21,459 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./aparc_std_tfm". 200311-11:24:21,465 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:24:21,469 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./aseg_std_tfm". 200311-11:24:21,476 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:24:24,156 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/aparc_std_tfm". 200311-11:24:24,163 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-11:24:24,166 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/aseg_std_tfm". 200311-11:24:24,172 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-11:24:27,445 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./aparc_std_tfm". 200311-11:24:27,452 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-11:24:27,454 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./aseg_std_tfm". 200311-11:24:27,460 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-11:24:31,415 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./aparc_std_tfm". 200311-11:24:31,421 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:24:31,426 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./aseg_std_tfm". 200311-11:24:31,433 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 200311-11:24:35,907 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/aparc_std_tfm". 200311-11:24:35,913 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-11:24:40,678 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./mask_std_tfm". 200311-11:24:40,683 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:28:40,3 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:28:43,79 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./pre_mask_dilate". 200311-11:28:43,83 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:28:45,486 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aseg_std_tfm". 200311-11:28:48,419 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aparc_std_tfm". 200311-11:28:49,276 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/mask_std_tfm". 200311-11:28:49,282 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:28:51,619 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./mask_std_tfm". 200311-11:28:51,624 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:29:02,541 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm". 200311-11:29:02,759 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm". 200311-11:29:05,676 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./mask_std_tfm". 200311-11:29:05,681 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:29:05,687 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/mask_std_tfm". 200311-11:29:05,692 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:29:16,493 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-11:29:19,888 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./mask_std_tfm". 200311-11:29:19,894 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:29:23,811 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aseg_std_tfm". 200311-11:29:26,67 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./mask_std_tfm". 200311-11:29:26,72 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:29:28,881 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aparc_std_tfm". 200311-11:29:32,273 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/aseg_std_tfm". 200311-11:29:32,280 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 200311-11:29:38,852 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm". 200311-11:29:42,261 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm". 200311-11:29:46,828 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./aparc_std_tfm". 200311-11:29:46,834 nipype.workflow INFO: [Node] Running "aparc_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/tonii/aparc+aseg_vol_out.nii.gz --interpolation MultiLabel --output aparc+aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-11:29:49,206 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/mask_std_tfm". 200311-11:29:49,212 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNIPediatricAsym/cohort-2/tpl-MNIPediatricAsym_cohort-2_res-1_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNIPediatricAsymcohort-2/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:29:55,479 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm". 200311-11:29:56,438 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm". 200311-11:29:59,246 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./aseg_std_tfm". 200311-11:29:59,251 nipype.workflow INFO: [Node] Running "aseg_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/tonii/aseg_vol_out.nii.gz --interpolation MultiLabel --output aseg_vol_out_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 200311-11:30:04,7 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.carpetplot_wf.mrg_xfms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/carpetplot_wf/mrg_xfms". 200311-11:30:04,10 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 200311-11:30:04,13 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.carpetplot_wf.mrg_xfms". 200311-11:30:06,374 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./mask_std_tfm". 200311-11:30:06,379 nipype.workflow INFO: [Node] Running "mask_std_tfm" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --interpolation MultiLabel --output ref_bold_corrected_brain_mask_maths_trans.nii.gz --reference-image /home/utooley/templateflow/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin6Asym/registration/ants_t1_to_mniComposite.h5 --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_fwd/affine.txt 200311-11:32:23,145 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:32:26,689 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./pre_mask_dilate". 200311-11:32:26,692 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:32:50,533 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:32:52,902 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./pre_mask_dilate". 200311-11:32:52,905 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:32:54,722 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-11:32:57,114 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.carpetplot_wf.resample_parc" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/carpetplot_wf/resample_parc". 200311-11:32:57,118 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 200311-11:33:01,955 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:33:05,274 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./pre_mask_dilate". 200311-11:33:05,277 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:33:21,172 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-11:33:22,343 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:33:23,417 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.carpetplot_wf.mrg_xfms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/carpetplot_wf/mrg_xfms". 200311-11:33:23,422 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 200311-11:33:23,425 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.carpetplot_wf.mrg_xfms". 200311-11:33:25,629 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./pre_mask_dilate". 200311-11:33:25,633 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:33:25,689 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.carpetplot_wf.resample_parc" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/carpetplot_wf/resample_parc". 200311-11:33:25,693 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 200311-11:33:39,64 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-11:33:39,603 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:33:41,734 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./pre_mask_dilate". 200311-11:33:41,738 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:33:41,746 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.carpetplot_wf.mrg_xfms" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/carpetplot_wf/mrg_xfms". 200311-11:33:41,750 nipype.workflow INFO: [Node] Running "mrg_xfms" ("nipype.interfaces.utility.base.Merge") 200311-11:33:41,752 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.carpetplot_wf.mrg_xfms". 200311-11:33:44,142 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.carpetplot_wf.resample_parc" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/carpetplot_wf/resample_parc". 200311-11:33:44,146 nipype.workflow INFO: [Node] Running "resample_parc" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /home/utooley/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg_trans.nii.gz --reference-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_reg_wf/bbreg_wf/fsl2itk_inv/affine.txt --transform /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniInverseComposite.h5 200311-11:33:58,822 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-11:34:09,840 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-11:34:22,769 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm". 200311-11:34:29,512 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm". 200311-11:35:39,523 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.carpetplot_wf.resample_parc". 200311-11:35:42,141 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.carpetplot_wf.conf_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/carpetplot_wf/conf_plot". 200311-11:35:42,147 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 200311-11:36:02,662 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.carpetplot_wf.resample_parc". 200311-11:36:06,136 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.carpetplot_wf.conf_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/carpetplot_wf/conf_plot". 200311-11:36:06,141 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 200311-11:36:16,999 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.carpetplot_wf.resample_parc". 200311-11:36:20,166 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.carpetplot_wf.conf_plot" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/carpetplot_wf/conf_plot". 200311-11:36:20,172 nipype.workflow INFO: [Node] Running "conf_plot" ("fmriprep.interfaces.confounds.FMRISummary") 200311-11:38:30,540 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.carpetplot_wf.conf_plot". 200311-11:38:30,601 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.carpetplot_wf.conf_plot". 200311-11:38:30,821 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.carpetplot_wf.conf_plot". 200311-11:50:47,135 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:50:49,84 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./bold_to_std_transform". 200311-11:50:49,349 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-11:51:05,292 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:51:08,85 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/pre_mask_dilate". 200311-11:51:08,88 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:51:22,933 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.mask_std_tfm". 200311-11:51:26,312 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/pre_mask_dilate". 200311-11:51:26,315 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:56:19,573 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aseg_std_tfm". 200311-11:56:22,773 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/pre_mask_dilate". 200311-11:56:22,777 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/mask_std_tfm/ref_bold_corrected_brain_mask_maths_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/pre_mask_dilate/ref_bold_corrected_brain_mask_maths_trans_dil.nii.gz 200311-11:56:32,108 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aseg_std_tfm". 200311-11:56:58,376 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.aparc_std_tfm". 200311-11:57:05,34 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.aparc_std_tfm". 200311-11:57:21,76 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aparc_std_tfm". 200311-12:00:46,818 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.aseg_std_tfm". 200311-12:05:34,772 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-12:05:47,897 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-12:09:05,415 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 200311-12:09:08,412 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/bold_to_std_transform". 200311-12:09:08,680 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-12:19:56,335 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_to_std_transform". 200311-12:19:59,556 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./merge". 200311-12:19:59,771 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-12:25:21,497 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.merge". 200311-12:25:23,682 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./validate". 200311-12:25:23,685 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-12:25:23,795 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-12:25:25,639 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./gen_ref". 200311-12:25:25,642 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-12:26:00,627 nipype.interface INFO: stderr 2020-03-11T12:26:00.627442:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-12:26:00,628 nipype.interface INFO: stderr 2020-03-11T12:26:00.628268:++ Authored by: RW Cox 200311-12:26:00,628 nipype.interface INFO: stderr 2020-03-11T12:26:00.628655:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./gen_ref/slice.nii.gz to FLOAT32 200311-12:26:00,628 nipype.interface INFO: stderr 2020-03-11T12:26:00.628791: Warnings of this type will be muted for this session. 200311-12:26:00,628 nipype.interface INFO: stderr 2020-03-11T12:26:00.628791: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-12:40:00,71 nipype.interface INFO: stderr 2020-03-11T12:40:00.071492:++ Max displacement in automask = 0.15 (mm) at sub-brick 15 200311-12:40:00,120 nipype.interface INFO: stderr 2020-03-11T12:40:00.120677:++ Max delta displ in automask = 0.16 (mm) at sub-brick 2 200311-12:40:55,509 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-12:41:01,292 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./bold_to_std_transform". 200311-12:41:01,558 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-13:11:02,83 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_to_std_transform". 200311-13:11:05,66 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct". 200311-13:11:05,113 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./merge". 200311-13:11:05,323 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-13:11:06,613 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-13:12:53,652 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-13:12:55,297 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass". 200311-13:12:55,301 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-13:13:17,250 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-13:13:19,239 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate". 200311-13:13:19,243 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-13:14:47,109 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-13:14:49,288 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_mask". 200311-13:14:49,292 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-13:14:51,873 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-13:14:53,293 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./unifize". 200311-13:14:53,297 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./unifize/ref_bold_corrected_brain_masked.nii.gz 200311-13:16:18,793 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-13:16:21,330 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_unifize". 200311-13:16:21,333 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-13:16:22,572 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-13:16:25,323 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_second_pass". 200311-13:16:25,327 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_second_pass/uni_xform.nii.gz 200311-13:16:30,401 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.merge". 200311-13:16:31,179 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-13:16:33,186 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_skullstrip2". 200311-13:16:33,190 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-13:16:33,196 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./validate". 200311-13:16:33,199 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-13:16:33,342 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-13:16:33,526 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-13:16:35,185 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks". 200311-13:16:35,190 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-13:16:35,195 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./gen_ref". 200311-13:16:35,198 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-13:16:36,999 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-13:16:39,328 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./apply_mask". 200311-13:16:39,332 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./apply_mask/uni_xform_masked.nii.gz 200311-13:16:41,831 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-13:17:06,400 nipype.interface INFO: stderr 2020-03-11T13:17:06.400449:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-13:17:06,401 nipype.interface INFO: stderr 2020-03-11T13:17:06.401277:++ Authored by: RW Cox 200311-13:17:06,401 nipype.interface INFO: stderr 2020-03-11T13:17:06.401681:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./gen_ref/slice.nii.gz to FLOAT32 200311-13:17:06,401 nipype.interface INFO: stderr 2020-03-11T13:17:06.401819: Warnings of this type will be muted for this session. 200311-13:17:06,401 nipype.interface INFO: stderr 2020-03-11T13:17:06.401819: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-13:17:06,402 nipype.interface INFO: stderr 2020-03-11T13:17:06.402854:++ Coarse del was 10, replaced with 9 200311-13:28:43,39 nipype.interface INFO: stderr 2020-03-11T13:28:43.039641:++ Max displacement in automask = 0.15 (mm) at sub-brick 15 200311-13:28:43,43 nipype.interface INFO: stderr 2020-03-11T13:28:43.043872:++ Max delta displ in automask = 0.16 (mm) at sub-brick 2 200311-13:29:29,190 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-13:29:34,536 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./bold_to_std_transform". 200311-13:29:34,813 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-14:06:18,382 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform". 200311-14:06:21,295 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct". 200311-14:06:21,337 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./merge". 200311-14:06:21,637 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-14:06:22,626 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-14:08:07,261 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-14:08:09,414 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass". 200311-14:08:09,418 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-14:08:30,327 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-14:08:33,446 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate". 200311-14:08:33,449 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-14:09:46,196 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-14:09:49,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_mask". 200311-14:09:49,522 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-14:09:52,34 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-14:09:53,589 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./unifize". 200311-14:09:53,593 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./unifize/ref_bold_corrected_brain_masked.nii.gz 200311-14:11:13,762 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-14:11:15,500 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_unifize". 200311-14:11:15,503 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-14:11:16,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-14:11:19,501 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_second_pass". 200311-14:11:19,505 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_second_pass/uni_xform.nii.gz 200311-14:11:24,896 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-14:11:27,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_skullstrip2". 200311-14:11:27,496 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-14:11:27,845 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-14:11:29,517 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks". 200311-14:11:29,521 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-14:11:31,240 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-14:11:33,493 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./apply_mask". 200311-14:11:33,498 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./apply_mask/uni_xform_masked.nii.gz 200311-14:11:35,825 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-14:12:22,883 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.merge". 200311-14:12:25,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./validate". 200311-14:12:25,398 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-14:12:25,519 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-14:12:27,364 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./gen_ref". 200311-14:12:27,367 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-14:13:02,822 nipype.interface INFO: stderr 2020-03-11T14:13:02.822763:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-14:13:02,823 nipype.interface INFO: stderr 2020-03-11T14:13:02.823577:++ Authored by: RW Cox 200311-14:13:02,824 nipype.interface INFO: stderr 2020-03-11T14:13:02.823986:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./gen_ref/slice.nii.gz to FLOAT32 200311-14:13:02,824 nipype.interface INFO: stderr 2020-03-11T14:13:02.824121: Warnings of this type will be muted for this session. 200311-14:13:02,824 nipype.interface INFO: stderr 2020-03-11T14:13:02.824121: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-14:26:36,73 nipype.interface INFO: stderr 2020-03-11T14:26:36.073603:++ Max displacement in automask = 0.21 (mm) at sub-brick 4 200311-14:26:36,75 nipype.interface INFO: stderr 2020-03-11T14:26:36.075958:++ Max delta displ in automask = 0.20 (mm) at sub-brick 11 200311-14:27:33,335 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-14:27:38,834 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/bold_to_std_transform". 200311-14:27:39,107 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-15:41:16,549 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_to_std_transform". 200311-15:41:18,625 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/merge". 200311-15:41:18,636 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct". 200311-15:41:18,874 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-15:41:20,131 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-15:43:08,183 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-15:43:10,810 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass". 200311-15:43:10,814 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-15:43:31,902 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-15:43:34,831 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate". 200311-15:43:34,834 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-15:45:01,802 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-15:45:04,833 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_mask". 200311-15:45:04,863 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-15:45:07,384 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-15:45:08,841 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./unifize". 200311-15:45:08,845 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./unifize/ref_bold_corrected_brain_masked.nii.gz 200311-15:46:34,779 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-15:46:36,888 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_unifize". 200311-15:46:36,892 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-15:46:38,129 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-15:46:40,884 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_second_pass". 200311-15:46:40,888 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_second_pass/uni_xform.nii.gz 200311-15:46:46,570 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-15:46:48,886 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_skullstrip2". 200311-15:46:48,889 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-15:46:49,237 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-15:46:50,879 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks". 200311-15:46:50,883 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-15:46:52,740 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-15:46:54,894 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./apply_mask". 200311-15:46:54,901 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./apply_mask/uni_xform_masked.nii.gz 200311-15:46:57,387 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-16:09:13,852 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.merge". 200311-16:09:17,135 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/validate". 200311-16:09:17,137 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-16:09:17,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-16:09:19,109 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref". 200311-16:09:19,111 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-16:14:22,289 nipype.interface INFO: stderr 2020-03-11T16:14:22.289471:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-16:14:22,290 nipype.interface INFO: stderr 2020-03-11T16:14:22.290295:++ Authored by: RW Cox 200311-16:14:22,290 nipype.interface INFO: stderr 2020-03-11T16:14:22.290627:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref/slice.nii.gz to FLOAT32 200311-16:14:22,290 nipype.interface INFO: stderr 2020-03-11T16:14:22.290782: Warnings of this type will be muted for this session. 200311-16:14:22,290 nipype.interface INFO: stderr 2020-03-11T16:14:22.290782: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-16:41:55,259 nipype.interface INFO: stderr 2020-03-11T16:41:55.259264:++ Max displacement in automask = 0.17 (mm) at sub-brick 15 200311-16:41:55,263 nipype.interface INFO: stderr 2020-03-11T16:41:55.263445:++ Max delta displ in automask = 0.19 (mm) at sub-brick 2 200311-16:49:45,315 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-16:49:52,461 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./bold_to_std_transform". 200311-16:49:52,757 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-17:20:39,841 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform". 200311-17:20:42,33 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct". 200311-17:20:42,76 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./merge". 200311-17:20:42,351 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-17:20:51,422 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-17:26:14,536 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.merge". 200311-17:26:16,253 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./validate". 200311-17:26:16,257 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-17:26:16,414 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-17:26:18,245 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./gen_ref". 200311-17:26:18,248 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-17:26:53,620 nipype.interface INFO: stderr 2020-03-11T17:26:53.620260:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-17:26:53,621 nipype.interface INFO: stderr 2020-03-11T17:26:53.621073:++ Authored by: RW Cox 200311-17:26:53,621 nipype.interface INFO: stderr 2020-03-11T17:26:53.621504:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./gen_ref/slice.nii.gz to FLOAT32 200311-17:26:53,621 nipype.interface INFO: stderr 2020-03-11T17:26:53.621640: Warnings of this type will be muted for this session. 200311-17:26:53,621 nipype.interface INFO: stderr 2020-03-11T17:26:53.621640: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-17:26:53,622 nipype.interface INFO: stderr 2020-03-11T17:26:53.622693:++ Coarse del was 10, replaced with 9 200311-17:35:03,872 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-17:35:06,456 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass". 200311-17:35:06,460 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-17:35:06,464 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.outputnode" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/outputnode". 200311-17:35:06,584 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 200311-17:35:06,592 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.outputnode". 200311-17:35:49,536 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-17:39:51,888 nipype.interface INFO: stderr 2020-03-11T17:39:51.888378:++ Max displacement in automask = 0.21 (mm) at sub-brick 4 200311-17:39:51,888 nipype.interface INFO: stderr 2020-03-11T17:39:51.888926:++ Max delta displ in automask = 0.20 (mm) at sub-brick 9 200311-17:40:21,681 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-17:43:51,781 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_to_std_transform". 200311-17:47:39,609 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate". 200311-17:47:39,614 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-17:47:39,621 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/merge". 200311-17:47:39,721 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-17:47:40,693 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./bold_to_std_transform". 200311-17:47:40,856 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-17:47:43,44 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct". 200311-17:47:44,626 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-17:49:42,767 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-17:49:45,21 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass". 200311-17:49:45,25 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-17:50:10,616 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-17:50:13,32 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate". 200311-17:50:13,36 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-17:51:34,45 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-17:51:37,34 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_mask". 200311-17:51:37,38 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-17:51:39,752 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-17:51:42,148 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./unifize". 200311-17:51:42,152 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./unifize/ref_bold_corrected_brain_masked.nii.gz 200311-17:53:10,700 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-17:53:13,68 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_unifize". 200311-17:53:13,71 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-17:53:14,452 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-17:53:17,96 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_second_pass". 200311-17:53:17,99 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_second_pass/uni_xform.nii.gz 200311-17:53:22,927 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-17:53:25,58 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_skullstrip2". 200311-17:53:25,61 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-17:53:25,435 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-17:53:27,72 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks". 200311-17:53:27,77 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-17:53:29,195 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-17:53:31,75 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./apply_mask". 200311-17:53:31,79 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./apply_mask/uni_xform_masked.nii.gz 200311-17:53:33,748 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-18:19:27,877 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.merge". 200311-18:19:29,534 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/validate". 200311-18:19:29,537 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-18:19:29,625 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-18:19:31,441 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref". 200311-18:19:31,444 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-18:21:38,21 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform". 200311-18:21:38,723 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym./merge". 200311-18:21:38,744 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/bold_to_std_transform". 200311-18:21:38,921 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-18:21:38,948 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-18:26:24,622 nipype.interface INFO: stderr 2020-03-11T18:26:24.621940:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-18:26:24,622 nipype.interface INFO: stderr 2020-03-11T18:26:24.622776:++ Authored by: RW Cox 200311-18:26:24,623 nipype.interface INFO: stderr 2020-03-11T18:26:24.623165:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref/slice.nii.gz to FLOAT32 200311-18:26:24,623 nipype.interface INFO: stderr 2020-03-11T18:26:24.623314: Warnings of this type will be muted for this session. 200311-18:26:24,623 nipype.interface INFO: stderr 2020-03-11T18:26:24.623314: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-18:31:13,472 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.merge". 200311-18:31:16,480 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./validate". 200311-18:31:16,483 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-18:31:16,613 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-18:31:18,501 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./gen_ref". 200311-18:31:18,504 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-18:32:03,208 nipype.interface INFO: stderr 2020-03-11T18:32:03.208710:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-18:32:03,209 nipype.interface INFO: stderr 2020-03-11T18:32:03.209544:++ Authored by: RW Cox 200311-18:32:03,209 nipype.interface INFO: stderr 2020-03-11T18:32:03.209949:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin2009cAsym./gen_ref/slice.nii.gz to FLOAT32 200311-18:32:03,210 nipype.interface INFO: stderr 2020-03-11T18:32:03.210087: Warnings of this type will be muted for this session. 200311-18:32:03,210 nipype.interface INFO: stderr 2020-03-11T18:32:03.210087: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-18:50:12,236 nipype.interface INFO: stderr 2020-03-11T18:50:12.236368:++ Max displacement in automask = 0.28 (mm) at sub-brick 9 200311-18:50:12,239 nipype.interface INFO: stderr 2020-03-11T18:50:12.239020:++ Max delta displ in automask = 0.25 (mm) at sub-brick 2 200311-18:51:29,244 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-18:51:37,588 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct". 200311-18:51:39,516 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-18:53:39,277 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-18:53:41,307 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass". 200311-18:53:41,311 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-18:54:05,184 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-18:54:07,308 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate". 200311-18:54:07,312 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-18:55:43,171 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-18:55:45,320 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_mask". 200311-18:55:45,324 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-18:55:48,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-18:55:51,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./unifize". 200311-18:55:51,353 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./unifize/ref_bold_corrected_brain_masked.nii.gz 200311-18:57:27,689 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-18:57:29,364 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_unifize". 200311-18:57:29,368 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-18:57:30,771 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-18:57:33,375 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_second_pass". 200311-18:57:33,379 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_second_pass/uni_xform.nii.gz 200311-18:57:39,717 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-18:57:41,348 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_skullstrip2". 200311-18:57:41,352 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-18:57:41,714 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-18:57:43,365 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks". 200311-18:57:43,369 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-18:57:45,393 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-18:57:47,362 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./apply_mask". 200311-18:57:47,367 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin2009cAsym./apply_mask/uni_xform_masked.nii.gz 200311-18:57:50,175 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-19:03:21,200 nipype.interface INFO: stderr 2020-03-11T19:03:21.200777:++ Max displacement in automask = 0.22 (mm) at sub-brick 4 200311-19:03:21,203 nipype.interface INFO: stderr 2020-03-11T19:03:21.203241:++ Max delta displ in automask = 0.22 (mm) at sub-brick 11 200311-19:09:33,70 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-19:09:35,449 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_mask". 200311-19:09:35,453 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-19:09:52,92 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-19:09:55,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/unifize". 200311-19:09:55,508 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/unifize/ref_bold_corrected_brain_masked.nii.gz 200311-19:13:20,63 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-19:13:28,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct". 200311-19:13:38,394 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-19:23:11,107 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-19:23:12,628 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_unifize". 200311-19:23:12,631 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-19:23:19,843 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-19:23:22,632 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_second_pass". 200311-19:23:22,637 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_second_pass/uni_xform.nii.gz 200311-19:24:25,252 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-19:24:28,640 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_skullstrip2". 200311-19:24:28,643 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-19:24:29,557 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-19:24:32,657 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks". 200311-19:24:32,662 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-19:24:42,124 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-19:24:44,645 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/apply_mask". 200311-19:24:44,649 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_piper_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/apply_mask/uni_xform_masked.nii.gz 200311-19:25:00,755 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_piper_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-19:27:48,490 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-19:27:50,514 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass". 200311-19:27:50,518 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-19:27:50,560 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.outputnode" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/outputnode". 200311-19:27:50,600 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 200311-19:27:50,631 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.outputnode". 200311-19:28:29,196 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-20:13:35,478 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate". 200311-20:13:35,482 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-21:31:58,528 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-21:32:00,690 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_mask". 200311-21:32:00,694 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-21:32:15,972 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-21:32:18,694 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/unifize". 200311-21:32:18,699 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/unifize/ref_bold_corrected_brain_masked.nii.gz 200311-21:43:36,621 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-21:43:38,764 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_unifize". 200311-21:43:38,767 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-21:43:45,60 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-21:43:46,759 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_second_pass". 200311-21:43:46,763 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_second_pass/uni_xform.nii.gz 200311-21:44:38,503 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-21:44:40,769 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_skullstrip2". 200311-21:44:40,772 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-21:44:41,482 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-21:44:42,771 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks". 200311-21:44:42,775 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-21:44:50,987 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-21:44:52,788 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/apply_mask". 200311-21:44:52,791 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_01_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/apply_mask/uni_xform_masked.nii.gz 200311-21:45:06,656 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_01_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-21:45:08,818 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./bold_to_std_transform". 200311-21:45:09,244 nipype.workflow INFO: [Node] Running "bold_to_std_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 200311-22:20:18,719 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform". 200311-22:20:21,442 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/merge". 200311-22:20:21,805 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-22:22:35,72 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_to_std_transform". 200311-22:22:36,504 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.merge" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/_std_target_MNI152NLin6Asym./merge". 200311-22:22:36,595 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.nilearn.Merge") 200311-22:24:07,40 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.merge". 200311-22:24:08,540 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./validate". 200311-22:24:10,165 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-22:24:10,206 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-22:24:10,549 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./gen_ref". 200311-22:24:10,551 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-22:24:17,433 nipype.interface INFO: stderr 2020-03-11T22:24:17.433344:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-22:24:17,433 nipype.interface INFO: stderr 2020-03-11T22:24:17.433833:++ Authored by: RW Cox 200311-22:24:17,434 nipype.interface INFO: stderr 2020-03-11T22:24:17.434472:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNI152NLin6Asym./gen_ref/slice.nii.gz to FLOAT32 200311-22:24:17,434 nipype.interface INFO: stderr 2020-03-11T22:24:17.434609: Warnings of this type will be muted for this session. 200311-22:24:17,434 nipype.interface INFO: stderr 2020-03-11T22:24:17.434609: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-22:24:17,435 nipype.interface INFO: stderr 2020-03-11T22:24:17.435665:++ Coarse del was 10, replaced with 9 200311-22:27:39,458 nipype.interface INFO: stderr 2020-03-11T22:27:39.458888:++ Max displacement in automask = 0.28 (mm) at sub-brick 9 200311-22:27:39,459 nipype.interface INFO: stderr 2020-03-11T22:27:39.459446:++ Max delta displ in automask = 0.25 (mm) at sub-brick 2 200311-22:27:52,182 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-22:27:54,951 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct". 200311-22:27:55,214 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-22:28:16,222 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-22:28:16,987 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass". 200311-22:28:16,991 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-22:28:21,124 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-22:28:22,978 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate". 200311-22:28:22,982 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-22:28:38,235 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-22:28:39,69 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_mask". 200311-22:28:39,73 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-22:28:39,821 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-22:28:41,39 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./unifize". 200311-22:28:41,43 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./unifize/ref_bold_corrected_brain_masked.nii.gz 200311-22:28:57,804 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-22:28:59,88 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_unifize". 200311-22:28:59,91 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-22:28:59,321 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-22:29:01,92 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_second_pass". 200311-22:29:01,95 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_second_pass/uni_xform.nii.gz 200311-22:29:02,127 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-22:29:03,89 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_skullstrip2". 200311-22:29:03,92 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-22:29:03,163 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-22:29:05,93 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks". 200311-22:29:05,98 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-22:29:05,450 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-22:29:07,92 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./apply_mask". 200311-22:29:07,96 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNI152NLin6Asym./apply_mask/uni_xform_masked.nii.gz 200311-22:29:07,561 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 200311-22:30:20,772 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.merge". 200311-22:30:21,32 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/validate". 200311-22:30:21,35 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 200311-22:30:21,221 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.validate". 200311-22:30:23,33 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref". 200311-22:30:23,36 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 200311-22:31:13,500 nipype.interface INFO: stderr 2020-03-11T22:31:13.500128:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit] 200311-22:31:13,500 nipype.interface INFO: stderr 2020-03-11T22:31:13.500790:++ Authored by: RW Cox 200311-22:31:13,501 nipype.interface INFO: stderr 2020-03-11T22:31:13.501312:** AFNI converts NIFTI_datatype=4 (INT16) in file /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/gen_ref/slice.nii.gz to FLOAT32 200311-22:31:13,501 nipype.interface INFO: stderr 2020-03-11T22:31:13.501457: Warnings of this type will be muted for this session. 200311-22:31:13,501 nipype.interface INFO: stderr 2020-03-11T22:31:13.501457: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. 200311-22:34:47,607 nipype.interface INFO: stderr 2020-03-11T22:34:47.607099:++ Max displacement in automask = 0.31 (mm) at sub-brick 9 200311-22:34:47,607 nipype.interface INFO: stderr 2020-03-11T22:34:47.607724:++ Max delta displ in automask = 0.26 (mm) at sub-brick 2 200311-22:35:41,666 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.gen_ref". 200311-22:35:45,470 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct". 200311-22:35:46,372 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/check_hdr/ref_bold_corrected_brain_mask_maths_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 200311-22:37:14,62 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 200311-22:37:15,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass". 200311-22:37:15,522 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/n4_correct/ref_bold_corrected.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 200311-22:37:15,531 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.outputnode" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/outputnode". 200311-22:37:15,651 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 200311-22:37:15,655 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.outputnode". 200311-22:37:21,134 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 200311-22:44:19,472 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate". 200311-22:44:19,476 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 200311-22:52:37,682 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 200311-22:52:39,762 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_mask". 200311-22:52:39,766 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 200311-22:52:45,981 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 200311-22:52:47,784 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/unifize". 200311-22:52:47,788 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/unifize/ref_bold_corrected_brain_masked.nii.gz 200311-22:54:04,27 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 200311-22:54:05,827 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_unifize". 200311-22:54:05,831 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 200311-22:54:06,510 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 200311-22:54:07,827 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_second_pass". 200311-22:54:07,831 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_second_pass/uni_xform.nii.gz 200311-22:54:12,886 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 200311-22:54:13,831 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_skullstrip2". 200311-22:54:13,834 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 200311-22:54:13,930 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 200311-22:54:15,833 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks". 200311-22:54:15,838 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 200311-22:54:16,745 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 200311-22:54:17,835 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/apply_mask". 200311-22:54:17,839 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/9999965.1.all.q/fmriprep_wf/single_subject_CBPD0201_wf/func_preproc_ses_01_task_rest_run_02_wf/bold_std_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/_std_target_MNIPediatricAsymcohort-2.res1.cohort2/apply_mask/uni_xform_masked.nii.gz 200311-22:54:19,346 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_CBPD0201_wf.func_preproc_ses_01_task_rest_run_02_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:513: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:513: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/nilearn/image/resampling.py:513: UserWarning: Casting data from int32 to float32 warnings.warn("Casting data from %s to %s" % (data.dtype.name, aux)) /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. betas = np.linalg.lstsq(X, data.T)[0] /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. warnings.warn("No contour levels were found" /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x fMRIPrep finished without errors pandoc-citeproc: reference mnipediatricasym not found /data/picsl/mackey_group/CBPD/bids_ppc_scripts/fmriprep/fmriprep_cmd_v20.0.2.sh: line 33: tricAsym:res-1:cohort-2: command not found