15:34:09 fslinstaller.py:2821: fslinstaller.py 15:34:09 fslinstaller.py:2822: Python: /mnt/shared/scratch/kmarians/apps/conda/bin/python 15:34:09 fslinstaller.py: 206: Installation log file: /tmp/kmarians_16602774/fslinstaller_n3jlqh9o.log 15:34:09 fslinstaller.py: 590: Downloading FSL installer manifest from https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/manifest.json 15:34:09 fslinstaller.py: 512: Downloading https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/manifest.json ... 15:34:09 fslinstaller.py:2370: Installer is up to date (this version: 3.9.0, latest version: 3.5.10) 15:34:09 fslinstaller.py: 206: Installing FSL implies agreement with the terms of the FSL license - if you do not agree with these terms, you can cancel the installation by pressing CTRL+C. 15:34:09 fslinstaller.py: 206: 15:34:09 fslinstaller.py: 206: FSL 6.0.7.7 selected for installation 15:34:09 fslinstaller.py: 206: Where do you want to install FSL? 15:34:09 fslinstaller.py: 206: Press enter to install to the default location [/home/kmarians/fsl] 15:34:28 fslinstaller.py: 220: FSL installation directory [/home/kmarians/fsl]:: /home/kmarians/scratch/apps/fsl 15:34:28 fslinstaller.py: 206: Destination directory [/home/kmarians/scratch/apps/fsl] already exists! 15:34:45 fslinstaller.py: 220: Do you want to overwrite it [y/N]?: y 15:34:45 fslinstaller.py: 206: Deleting directory /home/kmarians/scratch/apps/fsl 15:34:45 fslinstaller.py: 897: Running mv /home/kmarians/scratch/apps/fsl /tmp/kmarians_16602774/tmpioa7w_ju/old_destdir0 [as admin: False] 15:42:32 fslinstaller.py: 206: Downloading FSL environment specification from https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.7.7_linux-64.yml... 15:42:32 fslinstaller.py: 512: Downloading https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fsl-6.0.7.7_linux-64.yml ... 15:42:33 fslinstaller.py: 206: Installing FSL in /home/kmarians/scratch/apps/fsl 15:42:33 fslinstaller.py: 206: Downloading miniconda from https://github.com/conda-forge/miniforge/releases/download/23.11.0-0/Mambaforge-23.11.0-0-Linux-x86_64.sh... 15:42:33 fslinstaller.py: 512: Downloading https://github.com/conda-forge/miniforge/releases/download/23.11.0-0/Mambaforge-23.11.0-0-Linux-x86_64.sh ... 15:42:35 fslinstaller.py: 206: Installing miniconda at /home/kmarians/scratch/apps/fsl... 15:42:35 fslinstaller.py: 897: Running bash miniconda.sh -b -p /home/kmarians/scratch/apps/fsl [as admin: False] 15:42:35 fslinstaller.py:1084: [stdout]: PREFIX=/home/kmarians/scratch/apps/fsl 15:42:35 fslinstaller.py:1084: [stdout]: Unpacking payload ... 15:42:36 fslinstaller.py:1084: [stdout]: Extracting _libgcc_mutex-0.1-conda_forge.tar.bz2 15:42:36 fslinstaller.py:1084: [stdout]: Extracting ca-certificates-2023.11.17-hbcca054_0.conda 15:42:36 fslinstaller.py:1084: [stdout]: Extracting ld_impl_linux-64-2.40-h41732ed_0.conda 15:42:36 fslinstaller.py:1084: [stdout]: Extracting libstdcxx-ng-13.2.0-h7e041cc_3.conda 15:42:37 fslinstaller.py:1084: [stdout]: Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2 15:42:37 fslinstaller.py:1084: [stdout]: Extracting python_abi-3.10-4_cp310.conda 15:42:37 fslinstaller.py:1084: [stdout]: Extracting tzdata-2023c-h71feb2d_0.conda 15:42:37 fslinstaller.py:1084: [stdout]: Extracting libgomp-13.2.0-h807b86a_3.conda 15:42:37 fslinstaller.py:1084: [stdout]: Extracting _openmp_mutex-4.5-2_gnu.tar.bz2 15:42:38 fslinstaller.py:1084: [stdout]: Extracting libgcc-ng-13.2.0-h807b86a_3.conda 15:42:38 fslinstaller.py:1084: [stdout]: Extracting bzip2-1.0.8-hd590300_5.conda 15:42:38 fslinstaller.py:1084: [stdout]: Extracting c-ares-1.24.0-hd590300_0.conda 15:42:38 fslinstaller.py:1084: [stdout]: Extracting fmt-10.1.1-h00ab1b0_1.conda 15:42:38 fslinstaller.py:1084: [stdout]: Extracting icu-73.2-h59595ed_0.conda 15:42:38 fslinstaller.py:1084: [stdout]: Extracting keyutils-1.6.1-h166bdaf_0.tar.bz2 15:42:39 fslinstaller.py:1084: [stdout]: Extracting libev-4.33-hd590300_2.conda 15:42:39 fslinstaller.py:1084: [stdout]: Extracting libffi-3.4.2-h7f98852_5.tar.bz2 15:42:39 fslinstaller.py:1084: [stdout]: Extracting libiconv-1.17-hd590300_2.conda 15:42:39 fslinstaller.py:1084: [stdout]: Extracting libnsl-2.0.1-hd590300_0.conda 15:42:39 fslinstaller.py:1084: [stdout]: Extracting libuuid-2.38.1-h0b41bf4_0.conda 15:42:39 fslinstaller.py:1084: [stdout]: Extracting libzlib-1.2.13-hd590300_5.conda 15:42:39 fslinstaller.py:1084: [stdout]: Extracting lz4-c-1.9.4-hcb278e6_0.conda 15:42:39 fslinstaller.py:1084: [stdout]: Extracting lzo-2.10-h516909a_1000.tar.bz2 15:42:39 fslinstaller.py:1084: [stdout]: Extracting ncurses-6.4-h59595ed_2.conda 15:42:43 fslinstaller.py:1084: [stdout]: Extracting openssl-3.2.0-hd590300_1.conda 15:42:43 fslinstaller.py:1084: [stdout]: Extracting reproc-14.2.4.post0-hd590300_1.conda 15:42:43 fslinstaller.py:1084: [stdout]: Extracting xz-5.2.6-h166bdaf_0.tar.bz2 15:42:43 fslinstaller.py:1084: [stdout]: Extracting yaml-cpp-0.8.0-h59595ed_0.conda 15:42:43 fslinstaller.py:1084: [stdout]: Extracting libedit-3.1.20191231-he28a2e2_2.tar.bz2 15:42:44 fslinstaller.py:1084: [stdout]: Extracting libnghttp2-1.58.0-h47da74e_1.conda 15:42:44 fslinstaller.py:1084: [stdout]: Extracting libsolv-0.7.27-hfc55251_0.conda 15:42:44 fslinstaller.py:1084: [stdout]: Extracting libsqlite-3.44.2-h2797004_0.conda 15:42:44 fslinstaller.py:1084: [stdout]: Extracting libssh2-1.11.0-h0841786_0.conda 15:42:44 fslinstaller.py:1084: [stdout]: Extracting libxml2-2.12.3-h232c23b_0.conda 15:42:44 fslinstaller.py:1084: [stdout]: Extracting readline-8.2-h8228510_1.conda 15:42:44 fslinstaller.py:1084: [stdout]: Extracting reproc-cpp-14.2.4.post0-h59595ed_1.conda 15:42:44 fslinstaller.py:1084: [stdout]: Extracting tk-8.6.13-noxft_h4845f30_101.conda 15:42:45 fslinstaller.py:1084: [stdout]: Extracting zstd-1.5.5-hfc55251_0.conda 15:42:45 fslinstaller.py:1084: [stdout]: Extracting krb5-1.21.2-h659d440_0.conda 15:42:45 fslinstaller.py:1084: [stdout]: Extracting libarchive-3.7.2-h2aa1ff5_1.conda 15:42:46 fslinstaller.py:1084: [stdout]: Extracting python-3.10.13-hd12c33a_0_cpython.conda 15:42:49 fslinstaller.py:1084: [stdout]: Extracting libcurl-8.5.0-hca28451_0.conda 15:42:49 fslinstaller.py:1084: [stdout]: Extracting menuinst-2.0.1-py310hff52083_0.conda 15:42:49 fslinstaller.py:1084: [stdout]: Extracting archspec-0.2.2-pyhd8ed1ab_0.conda 15:42:49 fslinstaller.py:1084: [stdout]: Extracting boltons-23.1.1-pyhd8ed1ab_0.conda 15:42:49 fslinstaller.py:1084: [stdout]: Extracting brotli-python-1.1.0-py310hc6cd4ac_1.conda 15:42:49 fslinstaller.py:1084: [stdout]: Extracting certifi-2023.11.17-pyhd8ed1ab_0.conda 15:42:49 fslinstaller.py:1084: [stdout]: Extracting charset-normalizer-3.3.2-pyhd8ed1ab_0.conda 15:42:49 fslinstaller.py:1084: [stdout]: Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2 15:42:49 fslinstaller.py:1084: [stdout]: Extracting distro-1.8.0-pyhd8ed1ab_0.conda 15:42:50 fslinstaller.py:1084: [stdout]: Extracting idna-3.6-pyhd8ed1ab_0.conda 15:42:50 fslinstaller.py:1084: [stdout]: Extracting jsonpointer-2.4-py310hff52083_3.conda 15:42:50 fslinstaller.py:1084: [stdout]: Extracting libmamba-1.5.5-had39da4_0.conda 15:42:50 fslinstaller.py:1084: [stdout]: Extracting packaging-23.2-pyhd8ed1ab_0.conda 15:42:50 fslinstaller.py:1084: [stdout]: Extracting platformdirs-4.1.0-pyhd8ed1ab_0.conda 15:42:50 fslinstaller.py:1084: [stdout]: Extracting pluggy-1.3.0-pyhd8ed1ab_0.conda 15:42:50 fslinstaller.py:1084: [stdout]: Extracting pycosat-0.6.6-py310h2372a71_0.conda 15:42:50 fslinstaller.py:1084: [stdout]: Extracting pycparser-2.21-pyhd8ed1ab_0.tar.bz2 15:42:50 fslinstaller.py:1084: [stdout]: Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2 15:42:50 fslinstaller.py:1084: [stdout]: Extracting ruamel.yaml.clib-0.2.7-py310h2372a71_2.conda 15:42:51 fslinstaller.py:1084: [stdout]: Extracting setuptools-68.2.2-pyhd8ed1ab_0.conda 15:42:51 fslinstaller.py:1084: [stdout]: Extracting truststore-0.8.0-pyhd8ed1ab_0.conda 15:42:51 fslinstaller.py:1084: [stdout]: Extracting wheel-0.42.0-pyhd8ed1ab_0.conda 15:42:51 fslinstaller.py:1084: [stdout]: Extracting cffi-1.16.0-py310h2fee648_0.conda 15:42:51 fslinstaller.py:1084: [stdout]: Extracting jsonpatch-1.33-pyhd8ed1ab_0.conda 15:42:51 fslinstaller.py:1084: [stdout]: Extracting libmambapy-1.5.5-py310h39ff949_0.conda 15:42:51 fslinstaller.py:1084: [stdout]: Extracting pip-23.3.2-pyhd8ed1ab_0.conda 15:42:52 fslinstaller.py:1084: [stdout]: Extracting ruamel.yaml-0.18.5-py310h2372a71_0.conda 15:42:52 fslinstaller.py:1084: [stdout]: Extracting tqdm-4.66.1-pyhd8ed1ab_0.conda 15:42:52 fslinstaller.py:1084: [stdout]: Extracting urllib3-2.1.0-pyhd8ed1ab_0.conda 15:42:52 fslinstaller.py:1084: [stdout]: Extracting requests-2.31.0-pyhd8ed1ab_0.conda 15:42:52 fslinstaller.py:1084: [stdout]: Extracting zstandard-0.22.0-py310h1275a96_0.conda 15:42:53 fslinstaller.py:1084: [stdout]: Extracting conda-package-streaming-0.9.0-pyhd8ed1ab_0.conda 15:42:53 fslinstaller.py:1084: [stdout]: Extracting conda-package-handling-2.2.0-pyh38be061_0.conda 15:42:53 fslinstaller.py:1084: [stdout]: Extracting conda-23.11.0-py310hff52083_1.conda 15:42:53 fslinstaller.py:1084: [stdout]: Extracting conda-libmamba-solver-23.12.0-pyhd8ed1ab_0.conda 15:42:53 fslinstaller.py:1084: [stdout]: Extracting mamba-1.5.5-py310h51d5547_0.conda 15:42:53 fslinstaller.py:1084: [stdout]: 15:42:53 fslinstaller.py:1084: [stdout]: Installing base environment... 15:42:53 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: __ 15:42:54 fslinstaller.py:1084: [stdout]: __ ______ ___ ____ _____ ___ / /_ ____ _ 15:42:54 fslinstaller.py:1084: [stdout]: / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ 15:42:54 fslinstaller.py:1084: [stdout]: / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / 15:42:54 fslinstaller.py:1084: [stdout]: / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ 15:42:54 fslinstaller.py:1084: [stdout]: /_/ 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: Transaction 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: Prefix: /mnt/shared/scratch/kmarians/apps/fsl 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: Updating specs: 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::_libgcc_mutex==0.1=conda_forge[md5=d7c89558ba9fa0495403155b64376d81] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::ca-certificates==2023.11.17=hbcca054_0[md5=01ffc8d36f9eba0ce0b3c1955fa780ee] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::ld_impl_linux-64==2.40=h41732ed_0[md5=7aca3059a1729aa76c597603f10b0dd3] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libstdcxx-ng==13.2.0=h7e041cc_3[md5=937eaed008f6bf2191c5fe76f87755e9] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::python_abi==3.10=4_cp310[md5=26322ec5d7712c3ded99dd656142b8ce] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::tzdata==2023c=h71feb2d_0[md5=939e3e74d8be4dac89ce83b20de2492a] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libgomp==13.2.0=h807b86a_3[md5=7124cbb46b13d395bdde68f2d215c989] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::_openmp_mutex==4.5=2_gnu[md5=73aaf86a425cc6e73fcf236a5a46396d] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libgcc-ng==13.2.0=h807b86a_3[md5=23fdf1fef05baeb7eadc2aed5fb0011f] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::bzip2==1.0.8=hd590300_5[md5=69b8b6202a07720f448be700e300ccf4] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::c-ares==1.24.0=hd590300_0[md5=f5842b88e9cbfa177abfaeacd457a45d] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::fmt==10.1.1=h00ab1b0_1[md5=50a08d74ca45785f3334b175da23fd82] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::icu==73.2=h59595ed_0[md5=cc47e1facc155f91abd89b11e48e72ff] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::keyutils==1.6.1=h166bdaf_0[md5=30186d27e2c9fa62b45fb1476b7200e3] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libev==4.33=hd590300_2[md5=172bf1cd1ff8629f2b1179945ed45055] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libffi==3.4.2=h7f98852_5[md5=d645c6d2ac96843a2bfaccd2d62b3ac3] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libiconv==1.17=hd590300_2[md5=d66573916ffcf376178462f1b61c941e] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libnsl==2.0.1=hd590300_0[md5=30fd6e37fe21f86f4bd26d6ee73eeec7] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libuuid==2.38.1=h0b41bf4_0[md5=40b61aab5c7ba9ff276c41cfffe6b80b] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libzlib==1.2.13=hd590300_5[md5=f36c115f1ee199da648e0597ec2047ad] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::lz4-c==1.9.4=hcb278e6_0[md5=318b08df404f9c9be5712aaa5a6f0bb0] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::lzo==2.10=h516909a_1000[md5=bb14fcb13341b81d5eb386423b9d2bac] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::ncurses==6.4=h59595ed_2[md5=7dbaa197d7ba6032caf7ae7f32c1efa0] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::openssl==3.2.0=hd590300_1[md5=603827b39ea2b835268adb8c821b8570] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::reproc==14.2.4.post0=hd590300_1[md5=82ca53502dfd5a64a80dee76dae14685] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::xz==5.2.6=h166bdaf_0[md5=2161070d867d1b1204ea749c8eec4ef0] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::yaml-cpp==0.8.0=h59595ed_0[md5=965eaacd7c18eb8361fd12bb9e7a57d7] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libedit==3.1.20191231=he28a2e2_2[md5=4d331e44109e3f0e19b4cb8f9b82f3e1] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libnghttp2==1.58.0=h47da74e_1[md5=700ac6ea6d53d5510591c4344d5c989a] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libsolv==0.7.27=hfc55251_0[md5=7dc82edcd617c399ca7fdb51d993a0c2] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libsqlite==3.44.2=h2797004_0[md5=3b6a9f225c3dbe0d24f4fedd4625c5bf] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libssh2==1.11.0=h0841786_0[md5=1f5a58e686b13bcfde88b93f547d23fe] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libxml2==2.12.3=h232c23b_0[md5=bc6ac4c0cea148d924f621985bc3892b] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::readline==8.2=h8228510_1[md5=47d31b792659ce70f470b5c82fdfb7a4] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::reproc-cpp==14.2.4.post0=h59595ed_1[md5=715e1d720ec1a03715bebd237972fca5] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::tk==8.6.13=noxft_h4845f30_101[md5=d453b98d9c83e71da0741bb0ff4d76bc] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::zstd==1.5.5=hfc55251_0[md5=04b88013080254850d6c01ed54810589] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::krb5==1.21.2=h659d440_0[md5=cd95826dbd331ed1be26bdf401432844] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libarchive==3.7.2=h2aa1ff5_1[md5=3bf887827d1968275978361a6e405e4f] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::python==3.10.13=hd12c33a_0_cpython[md5=f3a8c32aa764c3e7188b4b810fc9d6ce] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libcurl==8.5.0=hca28451_0[md5=7144d5a828e2cae218e0e3c98d8a0aeb] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::menuinst==2.0.1=py310hff52083_0[md5=471a72a1214ff4910ab6095936aecdfd] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::archspec==0.2.2=pyhd8ed1ab_0[md5=0dc2fce00a160271714647c019e3a8a8] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::boltons==23.1.1=pyhd8ed1ab_0[md5=56febe65315cc388a5d20adf2b39a74d] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::brotli-python==1.1.0=py310hc6cd4ac_1[md5=1f95722c94f00b69af69a066c7433714] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::certifi==2023.11.17=pyhd8ed1ab_0[md5=2011bcf45376341dd1d690263fdbc789] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::charset-normalizer==3.3.2=pyhd8ed1ab_0[md5=7f4a9e3fcff3f6356ae99244a014da6a] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_0[md5=3faab06a954c2a04039983f2c4a50d99] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::distro==1.8.0=pyhd8ed1ab_0[md5=67999c5465064480fa8016d00ac768f6] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::idna==3.6=pyhd8ed1ab_0[md5=1a76f09108576397c41c0b0c5bd84134] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::jsonpointer==2.4=py310hff52083_3[md5=08ec1463dbc5c806a32fc431874032ca] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libmamba==1.5.5=had39da4_0[md5=3a99159f63c866711e67955885087700] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::packaging==23.2=pyhd8ed1ab_0[md5=79002079284aa895f883c6b7f3f88fd6] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::platformdirs==4.1.0=pyhd8ed1ab_0[md5=45a5065664da0d1dfa8f8cd2eaf05ab9] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::pluggy==1.3.0=pyhd8ed1ab_0[md5=2390bd10bed1f3fdc7a537fb5a447d8d] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::pycosat==0.6.6=py310h2372a71_0[md5=0adaac9a86d59adae2bc86b3cdef2df1] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::pycparser==2.21=pyhd8ed1ab_0[md5=076becd9e05608f8dc72757d5f3a91ff] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6[md5=2a7de29fb590ca14b5243c4c812c8025] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::ruamel.yaml.clib==0.2.7=py310h2372a71_2[md5=7c9da9721ee545d57ad759f020172853] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::setuptools==68.2.2=pyhd8ed1ab_0[md5=fc2166155db840c634a1291a5c35a709] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::truststore==0.8.0=pyhd8ed1ab_0[md5=08316d001eca8854392cf2837828ea11] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::wheel==0.42.0=pyhd8ed1ab_0[md5=1cdea58981c5cbc17b51973bcaddcea7] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::cffi==1.16.0=py310h2fee648_0[md5=45846a970e71ac98fd327da5d40a0a2c] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_0[md5=bfdb7c5c6ad1077c82a69a8642c87aff] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::libmambapy==1.5.5=py310h39ff949_0[md5=718fe2d638023e9eaaa2f8e05e1a8185] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::pip==23.3.2=pyhd8ed1ab_0[md5=8591c748f98dcc02253003533bc2e4b1] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::ruamel.yaml==0.18.5=py310h2372a71_0[md5=14fd49048b91c96a8fbf1113a8cc4f49] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::tqdm==4.66.1=pyhd8ed1ab_0[md5=03c97908b976498dcae97eb4e4f3149c] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::urllib3==2.1.0=pyhd8ed1ab_0[md5=f8ced8ee63830dec7ecc1be048d1470a] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0[md5=a30144e4156cdbb236f99ebb49828f8b] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::zstandard==0.22.0=py310h1275a96_0[md5=54698ba13cd3494547b289cd86a2176a] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::conda-package-streaming==0.9.0=pyhd8ed1ab_0[md5=38253361efb303deead3eab39ae9269b] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::conda-package-handling==2.2.0=pyh38be061_0[md5=8a3ae7f6318376aa08ea753367bb7dd6] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::conda==23.11.0=py310hff52083_1[md5=d5278ac990c67d5ed51584998aa16c5a] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/noarch::conda-libmamba-solver==23.12.0=pyhd8ed1ab_0[md5=e877d5150e73a0844ea2939be110c3b1] 15:42:54 fslinstaller.py:1084: [stdout]: - conda-forge/linux-64::mamba==1.5.5=py310h51d5547_0[md5=7e9379ab9a9540195193e3c00b48465b] 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: Package Version Build Channel Size 15:42:54 fslinstaller.py:1084: [stdout]: ─────────────────────────────────────────────────────────────────────────────────────── 15:42:54 fslinstaller.py:1084: [stdout]: Install: 15:42:54 fslinstaller.py:1084: [stdout]: ─────────────────────────────────────────────────────────────────────────────────────── 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: + _libgcc_mutex 0.1 conda_forge conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + _openmp_mutex 4.5 2_gnu conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + archspec 0.2.2 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + boltons 23.1.1 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + brotli-python 1.1.0 py310hc6cd4ac_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + bzip2 1.0.8 hd590300_5 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + c-ares 1.24.0 hd590300_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + ca-certificates 2023.11.17 hbcca054_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + certifi 2023.11.17 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + cffi 1.16.0 py310h2fee648_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + colorama 0.4.6 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + conda 23.11.0 py310hff52083_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + conda-libmamba-solver 23.12.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + conda-package-handling 2.2.0 pyh38be061_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + distro 1.8.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + fmt 10.1.1 h00ab1b0_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + icu 73.2 h59595ed_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + idna 3.6 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + jsonpatch 1.33 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + jsonpointer 2.4 py310hff52083_3 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + keyutils 1.6.1 h166bdaf_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + krb5 1.21.2 h659d440_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + ld_impl_linux-64 2.40 h41732ed_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libarchive 3.7.2 h2aa1ff5_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libcurl 8.5.0 hca28451_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libedit 3.1.20191231 he28a2e2_2 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libev 4.33 hd590300_2 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libffi 3.4.2 h7f98852_5 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libgcc-ng 13.2.0 h807b86a_3 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libgomp 13.2.0 h807b86a_3 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libiconv 1.17 hd590300_2 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libmamba 1.5.5 had39da4_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libmambapy 1.5.5 py310h39ff949_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libnghttp2 1.58.0 h47da74e_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libnsl 2.0.1 hd590300_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libsolv 0.7.27 hfc55251_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libsqlite 3.44.2 h2797004_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libssh2 1.11.0 h0841786_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libstdcxx-ng 13.2.0 h7e041cc_3 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libuuid 2.38.1 h0b41bf4_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libxml2 2.12.3 h232c23b_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + libzlib 1.2.13 hd590300_5 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + lz4-c 1.9.4 hcb278e6_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + lzo 2.10 h516909a_1000 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + mamba 1.5.5 py310h51d5547_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + menuinst 2.0.1 py310hff52083_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + ncurses 6.4 h59595ed_2 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + openssl 3.2.0 hd590300_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + packaging 23.2 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + pip 23.3.2 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + platformdirs 4.1.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + pluggy 1.3.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + pybind11-abi 4 hd8ed1ab_3 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + pycosat 0.6.6 py310h2372a71_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + pycparser 2.21 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + pysocks 1.7.1 pyha2e5f31_6 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + python 3.10.13 hd12c33a_0_cpython conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + python_abi 3.10 4_cp310 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + readline 8.2 h8228510_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + reproc 14.2.4.post0 hd590300_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + reproc-cpp 14.2.4.post0 h59595ed_1 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + requests 2.31.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + ruamel.yaml 0.18.5 py310h2372a71_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + ruamel.yaml.clib 0.2.7 py310h2372a71_2 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + setuptools 68.2.2 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + tk 8.6.13 noxft_h4845f30_101 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + tqdm 4.66.1 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + truststore 0.8.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + tzdata 2023c h71feb2d_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + urllib3 2.1.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + wheel 0.42.0 pyhd8ed1ab_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + xz 5.2.6 h166bdaf_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + yaml-cpp 0.8.0 h59595ed_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + zstandard 0.22.0 py310h1275a96_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: + zstd 1.5.5 hfc55251_0 conda-forge Cached 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: Summary: 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: Install: 77 packages 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: Total download: 0 B 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: ─────────────────────────────────────────────────────────────────────────────────────── 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: 15:42:54 fslinstaller.py:1084: [stdout]: Transaction starting 15:42:54 fslinstaller.py:1084: [stdout]: Linking _libgcc_mutex-0.1-conda_forge 15:42:54 fslinstaller.py:1084: [stdout]: Linking ca-certificates-2023.11.17-hbcca054_0 15:42:54 fslinstaller.py:1084: [stdout]: Linking ld_impl_linux-64-2.40-h41732ed_0 15:42:54 fslinstaller.py:1084: [stdout]: Linking libstdcxx-ng-13.2.0-h7e041cc_3 15:42:54 fslinstaller.py:1084: [stdout]: Linking pybind11-abi-4-hd8ed1ab_3 15:42:54 fslinstaller.py:1084: [stdout]: Linking python_abi-3.10-4_cp310 15:42:54 fslinstaller.py:1084: [stdout]: Linking tzdata-2023c-h71feb2d_0 15:42:57 fslinstaller.py:1084: [stdout]: Linking libgomp-13.2.0-h807b86a_3 15:42:57 fslinstaller.py:1084: [stdout]: Linking _openmp_mutex-4.5-2_gnu 15:42:57 fslinstaller.py:1084: [stdout]: Linking libgcc-ng-13.2.0-h807b86a_3 15:42:57 fslinstaller.py:1084: [stdout]: Linking bzip2-1.0.8-hd590300_5 15:42:58 fslinstaller.py:1084: [stdout]: Linking c-ares-1.24.0-hd590300_0 15:42:59 fslinstaller.py:1084: [stdout]: Linking fmt-10.1.1-h00ab1b0_1 15:42:59 fslinstaller.py:1084: [stdout]: Linking icu-73.2-h59595ed_0 15:43:02 fslinstaller.py:1084: [stdout]: Linking keyutils-1.6.1-h166bdaf_0 15:43:02 fslinstaller.py:1084: [stdout]: Linking libev-4.33-hd590300_2 15:43:02 fslinstaller.py:1084: [stdout]: Linking libffi-3.4.2-h7f98852_5 15:43:02 fslinstaller.py:1084: [stdout]: Linking libiconv-1.17-hd590300_2 15:43:03 fslinstaller.py:1084: [stdout]: Linking libnsl-2.0.1-hd590300_0 15:43:03 fslinstaller.py:1084: [stdout]: Linking libuuid-2.38.1-h0b41bf4_0 15:43:03 fslinstaller.py:1084: [stdout]: Linking libzlib-1.2.13-hd590300_5 15:43:03 fslinstaller.py:1084: [stdout]: Linking lz4-c-1.9.4-hcb278e6_0 15:43:03 fslinstaller.py:1084: [stdout]: Linking lzo-2.10-h516909a_1000 15:43:03 fslinstaller.py:1084: [stdout]: Linking ncurses-6.4-h59595ed_2 15:43:18 fslinstaller.py:1084: [stdout]: Linking openssl-3.2.0-hd590300_1 15:43:19 fslinstaller.py:1084: [stdout]: Linking reproc-14.2.4.post0-hd590300_1 15:43:19 fslinstaller.py:1084: [stdout]: Linking xz-5.2.6-h166bdaf_0 15:43:20 fslinstaller.py:1084: [stdout]: Linking yaml-cpp-0.8.0-h59595ed_0 15:43:20 fslinstaller.py:1084: [stdout]: Linking libedit-3.1.20191231-he28a2e2_2 15:43:20 fslinstaller.py:1084: [stdout]: Linking libnghttp2-1.58.0-h47da74e_1 15:43:20 fslinstaller.py:1084: [stdout]: Linking libsolv-0.7.27-hfc55251_0 15:43:20 fslinstaller.py:1084: [stdout]: Linking libsqlite-3.44.2-h2797004_0 15:43:20 fslinstaller.py:1084: [stdout]: Linking libssh2-1.11.0-h0841786_0 15:43:21 fslinstaller.py:1084: [stdout]: Linking libxml2-2.12.3-h232c23b_0 15:43:21 fslinstaller.py:1084: [stdout]: Linking readline-8.2-h8228510_1 15:43:22 fslinstaller.py:1084: [stdout]: Linking reproc-cpp-14.2.4.post0-h59595ed_1 15:43:22 fslinstaller.py:1084: [stdout]: Linking tk-8.6.13-noxft_h4845f30_101 15:43:24 fslinstaller.py:1084: [stdout]: Linking zstd-1.5.5-hfc55251_0 15:43:24 fslinstaller.py:1084: [stdout]: Linking krb5-1.21.2-h659d440_0 15:43:25 fslinstaller.py:1084: [stdout]: Linking libarchive-3.7.2-h2aa1ff5_1 15:43:25 fslinstaller.py:1084: [stdout]: Linking python-3.10.13-hd12c33a_0_cpython 15:43:36 fslinstaller.py:1084: [stdout]: Linking libcurl-8.5.0-hca28451_0 15:43:36 fslinstaller.py:1084: [stdout]: Linking menuinst-2.0.1-py310hff52083_0 15:43:37 fslinstaller.py:1084: [stdout]: Linking archspec-0.2.2-pyhd8ed1ab_0 15:43:37 fslinstaller.py:1084: [stdout]: Linking boltons-23.1.1-pyhd8ed1ab_0 15:43:37 fslinstaller.py:1084: [stdout]: Linking brotli-python-1.1.0-py310hc6cd4ac_1 15:43:37 fslinstaller.py:1084: [stdout]: Linking certifi-2023.11.17-pyhd8ed1ab_0 15:43:37 fslinstaller.py:1084: [stdout]: Linking charset-normalizer-3.3.2-pyhd8ed1ab_0 15:43:38 fslinstaller.py:1084: [stdout]: Linking colorama-0.4.6-pyhd8ed1ab_0 15:43:38 fslinstaller.py:1084: [stdout]: Linking distro-1.8.0-pyhd8ed1ab_0 15:43:38 fslinstaller.py:1084: [stdout]: Linking idna-3.6-pyhd8ed1ab_0 15:43:38 fslinstaller.py:1084: [stdout]: Linking jsonpointer-2.4-py310hff52083_3 15:43:38 fslinstaller.py:1084: [stdout]: Linking libmamba-1.5.5-had39da4_0 15:43:39 fslinstaller.py:1084: [stdout]: Linking packaging-23.2-pyhd8ed1ab_0 15:43:39 fslinstaller.py:1084: [stdout]: Linking platformdirs-4.1.0-pyhd8ed1ab_0 15:43:39 fslinstaller.py:1084: [stdout]: Linking pluggy-1.3.0-pyhd8ed1ab_0 15:43:39 fslinstaller.py:1084: [stdout]: Linking pycosat-0.6.6-py310h2372a71_0 15:43:39 fslinstaller.py:1084: [stdout]: Linking pycparser-2.21-pyhd8ed1ab_0 15:43:40 fslinstaller.py:1084: [stdout]: Linking pysocks-1.7.1-pyha2e5f31_6 15:43:40 fslinstaller.py:1084: [stdout]: Linking ruamel.yaml.clib-0.2.7-py310h2372a71_2 15:43:40 fslinstaller.py:1084: [stdout]: Linking setuptools-68.2.2-pyhd8ed1ab_0 15:43:41 fslinstaller.py:1084: [stdout]: Linking truststore-0.8.0-pyhd8ed1ab_0 15:43:42 fslinstaller.py:1084: [stdout]: Linking wheel-0.42.0-pyhd8ed1ab_0 15:43:42 fslinstaller.py:1084: [stdout]: Linking cffi-1.16.0-py310h2fee648_0 15:43:42 fslinstaller.py:1084: [stdout]: Linking jsonpatch-1.33-pyhd8ed1ab_0 15:43:42 fslinstaller.py:1084: [stdout]: Linking libmambapy-1.5.5-py310h39ff949_0 15:43:42 fslinstaller.py:1084: [stdout]: Linking pip-23.3.2-pyhd8ed1ab_0 15:43:45 fslinstaller.py:1084: [stdout]: Linking ruamel.yaml-0.18.5-py310h2372a71_0 15:43:47 fslinstaller.py:1084: [stdout]: Linking tqdm-4.66.1-pyhd8ed1ab_0 15:43:47 fslinstaller.py:1084: [stdout]: Linking urllib3-2.1.0-pyhd8ed1ab_0 15:43:47 fslinstaller.py:1084: [stdout]: Linking requests-2.31.0-pyhd8ed1ab_0 15:43:48 fslinstaller.py:1084: [stdout]: Linking zstandard-0.22.0-py310h1275a96_0 15:43:48 fslinstaller.py:1084: [stdout]: Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0 15:43:48 fslinstaller.py:1084: [stdout]: Linking conda-package-handling-2.2.0-pyh38be061_0 15:43:48 fslinstaller.py:1084: [stdout]: Linking conda-23.11.0-py310hff52083_1 15:43:51 fslinstaller.py:1084: [stdout]: Linking conda-libmamba-solver-23.12.0-pyhd8ed1ab_0 15:43:51 fslinstaller.py:1084: [stdout]: Linking mamba-1.5.5-py310h51d5547_0 15:43:51 fslinstaller.py:1084: [stdout]: Transaction finished 15:43:52 fslinstaller.py:1084: [stdout]: installation finished. 15:43:52 fslinstaller.py: 897: Running find /home/kmarians/scratch/apps/fsl -type f -exec touch {} + [as admin: False] 15:44:16 fslinstaller.py: 897: Running mkdir -p /home/kmarians/scratch/apps/fsl [as admin: False] 15:44:16 fslinstaller.py: 897: Running cp -f .condarc /home/kmarians/scratch/apps/fsl [as admin: False] 15:44:16 fslinstaller.py: 206: Installing FSL into /home/kmarians/scratch/apps/fsl... 15:44:16 fslinstaller.py: 897: Running /home/kmarians/scratch/apps/fsl/bin/mamba env update -p /home/kmarians/scratch/apps/fsl -f /tmp/kmarians_16602774/tmpioa7w_ju/fsl-6.0.7.7_linux-64.yml [as admin: False] 15:44:37 fslinstaller.py:1084: [stdout]: 15:44:37 fslinstaller.py:1084: [stdout]: 15:44:37 fslinstaller.py:1084: [stdout]: Looking for: ['boost-cpp=1.81', 'ciftilib==1.6.0', 'c-compiler', 'cxx-compiler', 'file-tree==1.2.1', 'file-tree-fsl==0.2.1', 'fmrib-unpack==3.7.1', 'fsleyes==1.10.0', 'fsleyes-plugin-mrs==0.1.2', 'fslpy==3.15.3', 'fsl-add_module==0.5.1', 'fsl-armawrap==0.6.0', 'fsl-asl_mfree==v1.0.2', 'fsl-avwutils==2209.2', 'fsl-base==2309.2', 'fsl-basil==v4.0.4', 'fsl-basisfield==2203.1', 'fsl-baycest==2111.0', 'fsl-bet2==2111.4', 'fsl-bianca==2209.3', 'fsl-biancadata==2006.0', 'fsl-bint==2111.0', 'fsl-cluster==2201.0', 'fsl-cprob==2111.0', 'fsl-cudimot==2006.0', 'fsl-data_atlases==2103.0', 'fsl-data_atlases_xtract==1.1.0', 'fsl-data_first_models_317_bin==2006.0', 'fsl-data_first_models_336_bin==2006.0', 'fsl-data_linearmni==1.0.0', 'fsl-data_omm==1.0', 'fsl-data_possum==2106.0', 'fsl-data_standard==2208.0', 'fsl-deface==1.3.1', 'fsl-discreteopt==2008.0', 'fsl-eddy==2111.0', 'fsl-eddy_qc==v1.2.3', 'fsl-fabber_core==4.0.11', 'fsl-fabber_models_asl==v2.0.8', 'fsl-fabber_models_cest==v2.1.6', 'fsl-fabber_models_dce==v2.1.5', 'fsl-fabber_models_dsc==v2.0.5', 'fsl-fabber_models_dualecho==v2.0.4', 'fsl-fabber_models_dwi==v2.0.3', 'fsl-fabber_models_pet==v1.0.1', 'fsl-fabber_models_qbold==v1.0.2', 'fsl-fabber_models_t1==v2.0.2', 'fsl-fast4==2111.3', 'fsl-fastpdlib==2111.1', 'fsl-fdt==2202.6', 'fsl-feat5==2201.5', 'fsl-film==2111.0', 'fsl-filmbabe==2111.0', 'fsl-first==2203.0', 'fsl-first_lib==2111.0', 'fsl-flameo==2111.0', 'fsl-flirt==2111.2', 'fsl-fnirt==2203.0', 'fsl-fugue==2201.4', 'fsl-get_standard==0.3.0', 'fsl-giftiio==2111.1', 'fsl-gps==2211.0', 'fsl-installer==3.5.7', 'fsl-lesions==2111.0', 'fsl-libgdc==2111.0', 'fsl-libmeshutils==2111.0', 'fsl-libvis==2111.0', 'fsl-mcflirt==2111.0', 'fsl-melodic==2111.3', 'fsl-meshclass==2111.0', 'fsl-misc_c==2111.0', 'fsl-misc_scripts==2111.0', 'fsl-misc_tcl==2303.0', 'fsl-miscmaths==2203.2', 'fsl-miscvis==2201.1', 'fsl-mist==2111.5', 'fsl-mm==2111.0', 'fsl_mrs==2.1.13', 'fsl-msm==2008.0', 'fsl-msmreglib==2008.0', 'fsl-mvdisc==2111.0', 'fsl-newimage==2203.11', 'fsl-nets==0.8.2', 'fsl-newmesh==2111.0', 'fsl-newnifti==4.1.0', 'fsl-newran==2111.0', 'fsl-oxford_asl==v4.0.29', 'fsl-pipe==1.0.1', 'fsl-possum==2111.2', 'fsl-ptx2==2111.4', 'fsl-pyfeeds==0.12.2', 'fsl-pyfeeds-tests==2302.0', 'fsl-qboot==2111.0', 'fsl-randomise==2203.3', 'fsl-shapemodel==2111.0', 'fsl-siena==2111.1', 'fsl-slicetimer==2111.0', 'fsl_sub==2.8.3', 'fsl_sub_plugin_sge==1.5.4', 'fsl_sub_plugin_slurm==1.6.1', 'fsl-surface==2111.1', 'fsl-susan==2111.0', 'fsl-swe==v1.1.0', 'fsl-tbss==2111.1', 'fsl-tirl==v2.2.1', 'fsl-topup==2203.2', 'fsl-utils==2203.4', 'fsl-vbm==2006.0', 'fsl-verbena==v4.0.3', 'fsl-vtkio==2111.0', 'fsl-warpfns==2203.0', 'fsl-wire==1.0.0', 'fsl-xtract==1.6.4.2', 'fsl-xtract_data==2.0.1', 'fsl-znzlib==2111.0', 'ghalton==0.6.1', 'hlsvdpropy==2.0.1', 'openblas==0.3.23[build=*openmp*]', 'make', 'matplotlib=3.8', 'nibabel=5', 'nidmresults==2.1.0', 'nidmresults-fsl==2.2.0', 'numpy=1.24', 'openslide-python==v1.1.2', 'pkg-config', 'python=3.11', 'spec2nii=0.7', 'tk=8.6', 'vtk=9.2', 'wxpython=4.2', 'zlib=1.2', 'fsl-cudabasisfield-cuda-10.2==1.1.1', 'fsl-eddy-cuda-10.2==2111.0', 'fsl-fdt-cuda-10.2==2202.6', 'fsl-mmorf-cuda-10.2==v0.3.2', 'fsl-ptx2-cuda-10.2==2111.4'] 15:44:37 fslinstaller.py:1084: [stdout]: 15:44:37 fslinstaller.py:1084: [stdout]: 15:45:42 fslinstaller.py:1084: [stdout]: Transaction 15:45:42 fslinstaller.py:1084: [stdout]: 15:45:42 fslinstaller.py:1084: [stdout]: Prefix: /home/kmarians/scratch/apps/fsl 15:45:42 fslinstaller.py:1084: [stdout]: 15:45:42 fslinstaller.py:1084: [stdout]: Updating specs: 15:45:42 fslinstaller.py:1084: [stdout]: 15:45:42 fslinstaller.py:1084: [stdout]: - boost-cpp=1.81 15:45:42 fslinstaller.py:1084: [stdout]: - ciftilib==1.6.0 15:45:42 fslinstaller.py:1084: [stdout]: - c-compiler 15:45:42 fslinstaller.py:1084: [stdout]: - cxx-compiler 15:45:42 fslinstaller.py:1084: [stdout]: - file-tree==1.2.1 15:45:42 fslinstaller.py:1084: [stdout]: - file-tree-fsl==0.2.1 15:45:42 fslinstaller.py:1084: [stdout]: - fmrib-unpack==3.7.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsleyes==1.10.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsleyes-plugin-mrs==0.1.2 15:45:42 fslinstaller.py:1084: [stdout]: - fslpy==3.15.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-add_module==0.5.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-armawrap==0.6.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-asl_mfree==v1.0.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-avwutils==2209.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-base==2309.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-basil==v4.0.4 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-basisfield==2203.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-baycest==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-bet2==2111.4 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-bianca==2209.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-biancadata==2006.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-bint==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-cluster==2201.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-cprob==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-cudimot==2006.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-data_atlases==2103.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-data_atlases_xtract==1.1.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-data_first_models_317_bin==2006.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-data_first_models_336_bin==2006.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-data_linearmni==1.0.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-data_omm==1.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-data_possum==2106.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-data_standard==2208.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-deface==1.3.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-discreteopt==2008.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-eddy==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-eddy_qc==v1.2.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_core==4.0.11 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_asl==v2.0.8 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_cest==v2.1.6 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_dce==v2.1.5 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_dsc==v2.0.5 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_dualecho==v2.0.4 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_dwi==v2.0.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_pet==v1.0.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_qbold==v1.0.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fabber_models_t1==v2.0.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fast4==2111.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fastpdlib==2111.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fdt==2202.6 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-feat5==2201.5 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-film==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-filmbabe==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-first==2203.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-first_lib==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-flameo==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-flirt==2111.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fnirt==2203.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fugue==2201.4 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-get_standard==0.3.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-giftiio==2111.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-gps==2211.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-installer==3.5.7 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-lesions==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-libgdc==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-libmeshutils==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-libvis==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-mcflirt==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-melodic==2111.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-meshclass==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-misc_c==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-misc_scripts==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-misc_tcl==2303.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-miscmaths==2203.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-miscvis==2201.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-mist==2111.5 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-mm==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl_mrs==2.1.13 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-msm==2008.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-msmreglib==2008.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-mvdisc==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-newimage==2203.11 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-nets==0.8.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-newmesh==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-newnifti==4.1.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-newran==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-oxford_asl==v4.0.29 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-pipe==1.0.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-possum==2111.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-ptx2==2111.4 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-pyfeeds==0.12.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-pyfeeds-tests==2302.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-qboot==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-randomise==2203.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-shapemodel==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-siena==2111.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-slicetimer==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl_sub==2.8.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl_sub_plugin_sge==1.5.4 15:45:42 fslinstaller.py:1084: [stdout]: - fsl_sub_plugin_slurm==1.6.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-surface==2111.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-susan==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-swe==v1.1.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-tbss==2111.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-tirl==v2.2.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-topup==2203.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-utils==2203.4 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-vbm==2006.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-verbena==v4.0.3 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-vtkio==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-warpfns==2203.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-wire==1.0.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-xtract==1.6.4.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-xtract_data==2.0.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-znzlib==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - ghalton==0.6.1 15:45:42 fslinstaller.py:1084: [stdout]: - hlsvdpropy==2.0.1 15:45:42 fslinstaller.py:1084: [stdout]: - openblas==0.3.23[build=*openmp*] 15:45:42 fslinstaller.py:1084: [stdout]: - make 15:45:42 fslinstaller.py:1084: [stdout]: - matplotlib=3.8 15:45:42 fslinstaller.py:1084: [stdout]: - nibabel=5 15:45:42 fslinstaller.py:1084: [stdout]: - nidmresults==2.1.0 15:45:42 fslinstaller.py:1084: [stdout]: - nidmresults-fsl==2.2.0 15:45:42 fslinstaller.py:1084: [stdout]: - numpy=1.24 15:45:42 fslinstaller.py:1084: [stdout]: - openslide-python==v1.1.2 15:45:42 fslinstaller.py:1084: [stdout]: - pkg-config 15:45:42 fslinstaller.py:1084: [stdout]: - spec2nii=0.7 15:45:42 fslinstaller.py:1084: [stdout]: - vtk=9.2 15:45:42 fslinstaller.py:1084: [stdout]: - wxpython=4.2 15:45:42 fslinstaller.py:1084: [stdout]: - zlib=1.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-cudabasisfield-cuda-10.2==1.1.1 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-eddy-cuda-10.2==2111.0 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-fdt-cuda-10.2==2202.6 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-mmorf-cuda-10.2==v0.3.2 15:45:42 fslinstaller.py:1084: [stdout]: - fsl-ptx2-cuda-10.2==2111.4 15:45:42 fslinstaller.py:1084: [stdout]: - python=3.11 15:45:42 fslinstaller.py:1084: [stdout]: - tk=8.6 15:45:42 fslinstaller.py:1084: [stdout]: 15:45:42 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: Package Version Build Channel Size 15:45:47 fslinstaller.py:1084: [stdout]: ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 15:45:47 fslinstaller.py:1084: [stdout]: Install: 15:45:47 fslinstaller.py:1084: [stdout]: ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-cudimot 2006.0 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 77kB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-data_atlases 2103.0 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 44MB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-data_atlases_xtract 1.1.0 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 4MB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-data_first_models_317_bin 2006.0 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 840MB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-data_first_models_336_bin 2006.0 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 1GB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-data_linearmni 1.0.0 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 6MB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-data_possum 2106.0 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 42MB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-data_standard 2208.0 0 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fslinstaller.py:1084: [stdout]: + fsl-xtract 1.6.4.2 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 46kB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-bianca 2209.3 0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 34kB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-vbm 2006.0 1 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 14kB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-mist 2111.5 hcdf05d3_0 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 2MB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-siena 2111.1 hb6de94e_4 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 73kB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-first 2203.0 hb6de94e_6 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 324kB 15:45:47 fslinstaller.py:1084: [stdout]: + fsl-feat5 2201.5 hb6de94e_4 fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public 3MB 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: Change: 15:45:47 fslinstaller.py:1084: [stdout]: ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: - libnghttp2 1.58.0 h47da74e_1 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + libnghttp2 1.58.0 h47da74e_0 conda-forge 631kB 15:45:47 fslinstaller.py:1084: [stdout]: - _openmp_mutex 4.5 2_gnu conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + _openmp_mutex 4.5 2_kmp_llvm conda-forge 6kB 15:45:47 fslinstaller.py:1084: [stdout]: - libarchive 3.7.2 h2aa1ff5_1 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + libarchive 3.7.2 h039dbb9_0 conda-forge 866kB 15:45:47 fslinstaller.py:1084: [stdout]: - ruamel.yaml.clib 0.2.7 py310h2372a71_2 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + ruamel.yaml.clib 0.2.7 py311h459d7ec_2 conda-forge 134kB 15:45:47 fslinstaller.py:1084: [stdout]: - pycosat 0.6.6 py310h2372a71_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + pycosat 0.6.6 py311h459d7ec_0 conda-forge 88kB 15:45:47 fslinstaller.py:1084: [stdout]: - jsonpointer 2.4 py310hff52083_3 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + jsonpointer 2.4 py311h38be061_3 conda-forge 18kB 15:45:47 fslinstaller.py:1084: [stdout]: - brotli-python 1.1.0 py310hc6cd4ac_1 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + brotli-python 1.1.0 py311hb755f60_1 conda-forge 351kB 15:45:47 fslinstaller.py:1084: [stdout]: - cffi 1.16.0 py310h2fee648_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + cffi 1.16.0 py311hb3a22ac_0 conda-forge 300kB 15:45:47 fslinstaller.py:1084: [stdout]: - zstandard 0.22.0 py310h1275a96_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + zstandard 0.22.0 py311haa97af0_0 conda-forge 415kB 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: Reinstall: 15:45:47 fslinstaller.py:1084: [stdout]: ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: o wheel 0.42.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o setuptools 68.2.2 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o pip 23.3.2 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o truststore 0.8.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o pysocks 1.7.1 pyha2e5f31_6 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o pycparser 2.21 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o pluggy 1.3.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o platformdirs 4.1.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o packaging 23.2 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o idna 3.6 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o distro 1.8.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o colorama 0.4.6 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o certifi 2023.11.17 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o boltons 23.1.1 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o archspec 0.2.2 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o tqdm 4.66.1 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o jsonpatch 1.33 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o requests 2.31.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o conda-package-handling 2.2.0 pyh38be061_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: o conda-libmamba-solver 23.12.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: Upgrade: 15:45:47 fslinstaller.py:1084: [stdout]: ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: - python_abi 3.10 4_cp310 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + python_abi 3.11 4_cp311 conda-forge 6kB 15:45:47 fslinstaller.py:1084: [stdout]: - python 3.10.13 hd12c33a_0_cpython conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + python 3.11.6 hab00c5b_0_cpython conda-forge 31MB 15:45:47 fslinstaller.py:1084: [stdout]: - menuinst 2.0.1 py310hff52083_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + menuinst 2.0.2 py311h38be061_0 conda-forge 163kB 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: Downgrade: 15:45:47 fslinstaller.py:1084: [stdout]: ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: - icu 73.2 h59595ed_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + icu 72.1 hcb278e6_0 conda-forge 12MB 15:45:47 fslinstaller.py:1084: [stdout]: - openssl 3.2.0 hd590300_1 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + openssl 3.1.5 hd590300_0 conda-forge 3MB 15:45:47 fslinstaller.py:1084: [stdout]: - libxml2 2.12.3 h232c23b_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + libxml2 2.11.5 h0d562d8_0 conda-forge 705kB 15:45:47 fslinstaller.py:1084: [stdout]: - libcurl 8.5.0 hca28451_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + libcurl 8.4.0 hca28451_0 conda-forge 386kB 15:45:47 fslinstaller.py:1084: [stdout]: - libmamba 1.5.5 had39da4_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + libmamba 1.5.3 had39da4_2 conda-forge 2MB 15:45:47 fslinstaller.py:1084: [stdout]: - libmambapy 1.5.5 py310h39ff949_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + libmambapy 1.5.3 py311hf2555c7_2 conda-forge 303kB 15:45:47 fslinstaller.py:1084: [stdout]: - ruamel.yaml 0.18.5 py310h2372a71_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + ruamel.yaml 0.17.21 py311h2582759_3 conda-forge 260kB 15:45:47 fslinstaller.py:1084: [stdout]: - urllib3 2.1.0 pyhd8ed1ab_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + urllib3 1.26.18 pyhd8ed1ab_0 conda-forge 115kB 15:45:47 fslinstaller.py:1084: [stdout]: - conda 23.11.0 py310hff52083_1 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + conda 23.10.0 py311h38be061_1 conda-forge 1MB 15:45:47 fslinstaller.py:1084: [stdout]: - mamba 1.5.5 py310h51d5547_0 conda-forge Cached 15:45:47 fslinstaller.py:1084: [stdout]: + mamba 1.5.3 py311h3072747_2 conda-forge 66kB 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: Summary: 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: Install: 570 packages 15:45:47 fslinstaller.py:1084: [stdout]: Change: 9 packages 15:45:47 fslinstaller.py:1084: [stdout]: Reinstall: 22 packages 15:45:47 fslinstaller.py:1084: [stdout]: Upgrade: 3 packages 15:45:47 fslinstaller.py:1084: [stdout]: Downgrade: 10 packages 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: Total download: 4GB 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 15:45:47 fslinstaller.py:1084: [stdout]: 15:45:47 fslinstaller.py:1084: [stdout]: 16:15:21 fslinstaller.py: 206: ERROR occurred during installation! 16:15:21 fslinstaller.py: 206: [Errno 2] No such file or directory: '/home/kmarians/scratch/apps/fsl/pkgs/fsl-data_first_models_317_bin-2006.0-0.tar.bz2' 16:16:36 fslinstaller.py:2768: File "/mnt/shared/scratch/kmarians/apps/FSL/fslinstaller.py", line 2760, in handle_error yield File "/mnt/shared/scratch/kmarians/apps/FSL/fslinstaller.py", line 2875, in main install_fsl(ctx) File "/mnt/shared/scratch/kmarians/apps/FSL/fslinstaller.py", line 2138, in install_fsl ctx.run(Process.monitor_progress, cmd, File "/mnt/shared/scratch/kmarians/apps/FSL/fslinstaller.py", line 1586, in run return process_func(admin=self.need_admin, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/mnt/shared/scratch/kmarians/apps/FSL/fslinstaller.py", line 1048, in monitor_progress progcount = progfunc(proc) if total else None ^^^^^^^^^^^^^^ File "/mnt/shared/scratch/kmarians/apps/FSL/fslinstaller.py", line 2032, in progress_v234 sizes = [op.getsize(p) for p in pkgs] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/mnt/shared/scratch/kmarians/apps/FSL/fslinstaller.py", line 2032, in sizes = [op.getsize(p) for p in pkgs] ^^^^^^^^^^^^^ File "", line 50, in getsize 16:16:36 fslinstaller.py:2771: Environment variables: 16:16:36 fslinstaller.py:2773: SLURM_JOB_GROUP=kmarians 16:16:36 fslinstaller.py:2773: CONDA_SHLVL=0 16:16:36 fslinstaller.py:2773: LD_LIBRARY_PATH=/opt/slurm/latest/lib64 16:16:36 fslinstaller.py:2773: LS_COLORS=rs=0:di=38;5;33:ln=38;5;51:mh=00:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=01;05;37;41:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;40:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.zst=38;5;9:*.tzst=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.wim=38;5;9:*.swm=38;5;9:*.dwm=38;5;9:*.esd=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.mjpg=38;5;13:*.mjpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.m4a=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.oga=38;5;45:*.opus=38;5;45:*.spx=38;5;45:*.xspf=38;5;45: 16:16:36 fslinstaller.py:2773: CONDA_EXE=/mnt/shared/scratch/kmarians/apps/conda/bin/conda 16:16:36 fslinstaller.py:2773: SRUN_DEBUG=3 16:16:36 fslinstaller.py:2773: SLURM_STEP_ID=0 16:16:36 fslinstaller.py:2773: STY=1165515.fsl 16:16:36 fslinstaller.py:2773: SLURM_NODEID=0 16:16:36 fslinstaller.py:2773: SLURM_TASK_PID=1097675 16:16:36 fslinstaller.py:2773: SSH_CONNECTION=92.237.66.91 53328 143.234.80.231 22 16:16:36 fslinstaller.py:2773: SLURM_PRIO_PROCESS=5 16:16:36 fslinstaller.py:2773: SLURM_CPU_BIND_VERBOSE=quiet 16:16:36 fslinstaller.py:2773: MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD 16:16:36 fslinstaller.py:2773: LANG=en_GB.UTF-8 16:16:36 fslinstaller.py:2773: SLURM_SUBMIT_DIR=/mnt/shared/scratch/kmarians/apps/FSL 16:16:36 fslinstaller.py:2773: OLDPWD=/home/kmarians 16:16:36 fslinstaller.py:2773: APPS=/mnt/shared/scratch/kmarians/apps/ 16:16:36 fslinstaller.py:2773: SLURM_STEPID=0 16:16:36 fslinstaller.py:2773: SLURM_SRUN_COMM_HOST=10.25.0.231 16:16:36 fslinstaller.py:2773: SLURM_DISTRIBUTION=cyclic 16:16:36 fslinstaller.py:2773: SLURM_PROCID=0 16:16:36 fslinstaller.py:2773: SLURM_JOB_GID=896600222 16:16:36 fslinstaller.py:2773: SLURM_CPU_BIND=quiet,mask_cpu:0x0000000000000001 16:16:36 fslinstaller.py:2773: SLURMD_NODENAME=n19-32-192-drax 16:16:36 fslinstaller.py:2773: SLURM_JOB_END_TIME=1709048032 16:16:36 fslinstaller.py:2773: SLURM_TASKS_PER_NODE=1 16:16:36 fslinstaller.py:2773: _CE_M= 16:16:36 fslinstaller.py:2773: which_declare=declare -f 16:16:36 fslinstaller.py:2773: XDG_SESSION_ID=22896 16:16:36 fslinstaller.py:2773: MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl 16:16:36 fslinstaller.py:2773: SLURM_NNODES=1 16:16:36 fslinstaller.py:2773: USER=kmarians 16:16:36 fslinstaller.py:2773: PROJECTS=/mnt/shared/projects/ 16:16:36 fslinstaller.py:2773: SLURM_LAUNCH_NODE_IPADDR=10.25.0.231 16:16:36 fslinstaller.py:2773: SLURM_STEP_TASKS_PER_NODE=1 16:16:36 fslinstaller.py:2773: SLURM_JOB_START_TIME=1708961632 16:16:36 fslinstaller.py:2773: PWD=/home/kmarians/scratch/apps/FSL 16:16:36 fslinstaller.py:2773: SLURM_JOB_NODELIST=n19-32-192-drax 16:16:36 fslinstaller.py:2773: HOME=/home/kmarians 16:16:36 fslinstaller.py:2773: SLURM_CLUSTER_NAME=cropdiv-hpc 16:16:36 fslinstaller.py:2773: CONDA_PYTHON_EXE=/mnt/shared/scratch/kmarians/apps/conda/bin/python 16:16:36 fslinstaller.py:2773: WINDOW=0 16:16:36 fslinstaller.py:2773: SLURM_NODELIST=n19-32-192-drax 16:16:36 fslinstaller.py:2773: SSH_CLIENT=92.237.66.91 53328 22 16:16:36 fslinstaller.py:2773: SLURM_NTASKS=1 16:16:36 fslinstaller.py:2773: SLURM_UMASK=0002 16:16:36 fslinstaller.py:2773: SLURM_JOB_CPUS_PER_NODE=1 16:16:36 fslinstaller.py:2773: SLURM_TOPOLOGY_ADDR=n19-32-192-drax 16:16:36 fslinstaller.py:2773: SLURMD_DEBUG=2 16:16:36 fslinstaller.py:2773: _CE_CONDA= 16:16:36 fslinstaller.py:2773: SLURM_WORKING_CLUSTER=cropdiv-hpc:gruffalo:6817:9984:109 16:16:36 fslinstaller.py:2773: SLURM_STEP_NODELIST=n19-32-192-drax 16:16:36 fslinstaller.py:2773: SLURM_JOB_NAME=bash 16:16:36 fslinstaller.py:2773: SLURM_SRUN_COMM_PORT=60850 16:16:36 fslinstaller.py:2773: TMPDIR=/tmp/kmarians_16602774 16:16:36 fslinstaller.py:2773: SLURM_JOBID=16602774 16:16:36 fslinstaller.py:2773: SLURM_CONF=/etc/slurm/slurm.conf 16:16:36 fslinstaller.py:2773: LOADEDMODULES= 16:16:36 fslinstaller.py:2773: SCRATCH=/mnt/shared/scratch/kmarians/ 16:16:36 fslinstaller.py:2773: SLURM_JOB_QOS=normal 16:16:36 fslinstaller.py:2773: SLURM_TOPOLOGY_ADDR_PATTERN=node 16:16:36 fslinstaller.py:2773: SSH_TTY=/dev/pts/20 16:16:36 fslinstaller.py:2773: SLURM_CPUS_ON_NODE=2 16:16:36 fslinstaller.py:2773: SLURM_JOB_NUM_NODES=1 16:16:36 fslinstaller.py:2773: SLURM_MEM_PER_NODE=32768 16:16:36 fslinstaller.py:2773: SHELL=/bin/bash 16:16:36 fslinstaller.py:2773: TERM=screen.xterm-256color 16:16:36 fslinstaller.py:2773: SLURM_JOB_UID=896600222 16:16:36 fslinstaller.py:2773: SLURM_JOB_PARTITION=medium 16:16:36 fslinstaller.py:2773: SLURM_SCRIPT_CONTEXT=prolog_task 16:16:36 fslinstaller.py:2773: SLURM_PTY_WIN_ROW=30 16:16:36 fslinstaller.py:2773: SLURM_CPU_BIND_LIST=0x0000000000000001 16:16:36 fslinstaller.py:2773: SLURM_JOB_USER=kmarians 16:16:36 fslinstaller.py:2773: SLURM_PTY_WIN_COL=139 16:16:36 fslinstaller.py:2773: SLURM_NPROCS=1 16:16:36 fslinstaller.py:2773: SHLVL=5 16:16:36 fslinstaller.py:2773: SLURM_SUBMIT_HOST=gruffalo.hpc.hutton.ac.uk 16:16:36 fslinstaller.py:2773: SLURM_JOB_ACCOUNT=cropdiv-acc 16:16:36 fslinstaller.py:2773: MANPATH=/opt/slurm/latest/share/man/:/opt/slurm/latest/share/man/:/opt/slurm/latest/share/man/:/opt/slurm/latest/share/man/:: 16:16:36 fslinstaller.py:2773: SLURM_STEP_LAUNCHER_PORT=60850 16:16:36 fslinstaller.py:2773: MODULEPATH=/etc/scl/modulefiles:/etc/scl/modulefiles:/etc/scl/modulefiles:/etc/scl/modulefiles:/usr/share/Modules/modulefiles:/etc/modulefiles:/usr/share/modulefiles 16:16:36 fslinstaller.py:2773: SLURM_PTY_PORT=60849 16:16:36 fslinstaller.py:2773: SLURM_GTIDS=0 16:16:36 fslinstaller.py:2773: LOGNAME=kmarians 16:16:36 fslinstaller.py:2773: DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/896600222/bus 16:16:36 fslinstaller.py:2773: XDG_RUNTIME_DIR=/run/user/896600222 16:16:36 fslinstaller.py:2773: MODULEPATH_modshare=/usr/share/Modules/modulefiles:2:/etc/modulefiles:2:/usr/share/modulefiles:2 16:16:36 fslinstaller.py:2773: PATH=/opt/openmpi/latest/bin/:/opt/slurm/latest/bin/:/mnt/shared/apps/guppy/4.2.2/:/mnt/shared/apps/aspera/3.9.2/bin/:/mnt/cluster/scripts/:/mnt/shared/scratch/kmarians/apps/conda/bin/:/opt/openmpi/latest/bin:/opt/slurm/latest/bin:/mnt/shared/apps/guppy/4.2.2:/mnt/shared/apps/aspera/3.9.2/bin:/mnt/cluster/scripts:/mnt/shared/scratch/kmarians/apps/conda/bin:/opt/openmpi/latest/bin:/opt/slurm/latest/bin:/mnt/shared/apps/guppy/4.2.2:/mnt/shared/apps/aspera/3.9.2/bin:/mnt/cluster/scripts:/mnt/shared/scratch/kmarians/apps/conda/bin:/home/kmarians/.local/bin:/home/kmarians/bin:/opt/openmpi/latest/bin:/opt/slurm/latest/bin:/usr/share/Modules/bin:/mnt/shared/apps/guppy/4.2.2:/mnt/shared/apps/aspera/3.9.2/bin:/mnt/cluster/scripts:/mnt/shared/scratch/kmarians/apps/conda/condabin:/mnt/shared/scratch/kmarians/apps/conda/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin 16:16:36 fslinstaller.py:2773: SLURM_JOB_ID=16602774 16:16:36 fslinstaller.py:2773: SLURM_CPU_BIND_TYPE=mask_cpu: 16:16:36 fslinstaller.py:2773: DEBUGINFOD_URLS=https://debuginfod.centos.org/ 16:16:36 fslinstaller.py:2773: SLURM_STEP_NUM_TASKS=1 16:16:36 fslinstaller.py:2773: MODULESHOME=/usr/share/Modules 16:16:36 fslinstaller.py:2773: SLURM_STEP_NUM_NODES=1 16:16:36 fslinstaller.py:2773: TERMCAP=SC|screen.xterm-256color|VT 100/ANSI X3.64 virtual terminal:\ :DO=\E[%dB:LE=\E[%dD:RI=\E[%dC:UP=\E[%dA:bs:bt=\E[Z:\ :cd=\E[J:ce=\E[K:cl=\E[H\E[J:cm=\E[%i%d;%dH:ct=\E[3g:\ :do=^J:nd=\E[C:pt:rc=\E8:rs=\Ec:sc=\E7:st=\EH:up=\EM:\ :le=^H:bl=^G:cr=^M:it#8:ho=\E[H:nw=\EE:ta=^I:is=\E)0:\ :li#25:co#135:am:xn:xv:LP:sr=\EM:al=\E[L:AL=\E[%dL:\ :cs=\E[%i%d;%dr:dl=\E[M:DL=\E[%dM:dc=\E[P:DC=\E[%dP:\ :im=\E[4h:ei=\E[4l:mi:IC=\E[%d@:ks=\E[?1h\E=:\ :ke=\E[?1l\E>:vi=\E[?25l:ve=\E[34h\E[?25h:vs=\E[34l:\ :ti=\E[?1049h:te=\E[?1049l:us=\E[4m:ue=\E[24m:so=\E[3m:\ :se=\E[23m:mb=\E[5m:md=\E[1m:mh=\E[2m:mr=\E[7m:\ :me=\E[m:ms:\ :Co#8:pa#64:AF=\E[3%dm:AB=\E[4%dm:op=\E[39;49m:AX:\ :vb=\Eg:G0:as=\E(0:ae=\E(B:\ :ac=\140\140aaffggjjkkllmmnnooppqqrrssttuuvvwwxxyyzz{{||}}~~..--++,,hhII00:\ :po=\E[5i:pf=\E[4i:Km=\E[M:k0=\E[10~:k1=\EOP:k2=\EOQ:\ :k3=\EOR:k4=\EOS:k5=\E[15~:k6=\E[17~:k7=\E[18~:\ :k8=\E[19~:k9=\E[20~:k;=\E[21~:F1=\E[23~:F2=\E[24~:\ :F3=\E[1;2P:F4=\E[1;2Q:F5=\E[1;2R:F6=\E[1;2S:\ :F7=\E[15;2~:F8=\E[17;2~:F9=\E[18;2~:FA=\E[19;2~:\ :FB=\E[20;2~:FC=\E[21;2~:FD=\E[23;2~:FE=\E[24;2~:kb=:\ :K2=\EOE:kB=\E[Z:kF=\E[1;2B:kR=\E[1;2A:*4=\E[3;2~:\ :*7=\E[1;2F:#2=\E[1;2H:#3=\E[2;2~:#4=\E[1;2D:%c=\E[6;2~:\ :%e=\E[5;2~:%i=\E[1;2C:kh=\E[1~:@1=\E[1~:kH=\E[4~:\ :@7=\E[4~:kN=\E[6~:kP=\E[5~:kI=\E[2~:kD=\E[3~:ku=\EOA:\ :kd=\EOB:kr=\EOC:kl=\EOD:km: 16:16:36 fslinstaller.py:2773: SLURM_LOCALID=0 16:16:36 fslinstaller.py:2773: LESSOPEN=||/usr/bin/lesspipe.sh %s 16:16:36 fslinstaller.py:2773: BASH_FUNC_which%%=() { ( alias; eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@ } 16:16:36 fslinstaller.py:2773: BASH_FUNC_module%%=() { _module_raw "$@" 2>&1 } 16:16:36 fslinstaller.py:2773: BASH_FUNC__module_raw%%=() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='vx' ;; *v*) set +v; _mlshdbg='v' ;; *x*) set +x; _mlshdbg='x' ;; *) _mlshdbg='' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS=' '; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval 'echo ${'$_mlv'+x}'`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='`eval 'echo ${'$_mlv'}'`' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash '"$@"'`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus } 16:16:36 fslinstaller.py:2773: BASH_FUNC_switchml%%=() { typeset swfound=1; if [ "${MODULES_USE_COMPAT_VERSION:-0}" = '1' ]; then typeset swname='main'; if [ -e /usr/share/Modules/libexec/modulecmd.tcl ]; then typeset swfound=0; unset MODULES_USE_COMPAT_VERSION; fi; else typeset swname='compatibility'; if [ -e /usr/share/Modules/libexec/modulecmd-compat ]; then typeset swfound=0; MODULES_USE_COMPAT_VERSION=1; export MODULES_USE_COMPAT_VERSION; fi; fi; if [ $swfound -eq 0 ]; then echo "Switching to Modules $swname version"; source /usr/share/Modules/init/bash; else echo "Cannot switch to Modules $swname version, command not found"; return 1; fi } 16:16:36 fslinstaller.py:2773: BASH_FUNC_scl%%=() { if [ "$1" = "load" -o "$1" = "unload" ]; then eval "module $@"; else /usr/bin/scl "$@"; fi } 16:16:36 fslinstaller.py:2773: BASH_FUNC_ml%%=() { module ml "$@" } 16:16:36 fslinstaller.py:2773: _=/mnt/shared/scratch/kmarians/apps/conda/bin/python 16:17:26 fslinstaller.py: 206: Removing failed installation directory /home/kmarians/scratch/apps/fsl 16:17:26 fslinstaller.py: 897: Running rm -r /home/kmarians/scratch/apps/fsl [as admin: False] 17:22:15 fslinstaller.py: 206: Restoring contents of /home/kmarians/scratch/apps/fsl 17:22:15 fslinstaller.py: 897: Running mv /tmp/kmarians_16602774/tmpioa7w_ju/old_destdir0 /home/kmarians/scratch/apps/fsl [as admin: False]