220325-19:27:38,571 nipype.workflow INFO:
Running with omp_nthreads=8, nthreads=48
220325-19:27:38,573 nipype.workflow IMPORTANT:
Running qsiprep version 0.15.1:
* BIDS dataset path: /home/elevchenko/Entropy/raw_data/controls.
* Participant list: ['OAS30001'].
* Run identifier: 20220325-192732_1ded0a64-ca72-4686-9939-84599280ae45.
220325-19:33:17,774 nipype.workflow INFO:
Combining all dwi files within each available session:
220325-19:33:17,776 nipype.workflow INFO:
- 1 scans in session d0757
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d0581
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d3731
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d2229
220325-19:33:17,776 nipype.workflow INFO:
- 2 scans in session d3132
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d2669
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d2377
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d1274
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d3453
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d0788
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d2232
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d3457
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d1101
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d1374
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d2341
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d0061
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d1641
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d2340
220325-19:33:17,776 nipype.workflow INFO:
- 0 scans in session d2345
220325-19:33:17,808 nipype.workflow INFO:
[{'dwi_series': ['/home/elevchenko/Entropy/raw_data/controls/sub-OAS30001/ses-d0757/dwi/sub-OAS30001_ses-d0757_dwi.nii.gz'], 'fieldmap_info': {'suffix': None}, 'dwi_series_pedir': 'j-', 'concatenated_bids_name': 'sub-OAS30001_ses-d0757'}, {'dwi_series': ['/home/elevchenko/Entropy/raw_data/controls/sub-OAS30001/ses-d3132/dwi/sub-OAS30001_ses-d3132_run-01_dwi.nii.gz', '/home/elevchenko/Entropy/raw_data/controls/sub-OAS30001/ses-d3132/dwi/sub-OAS30001_ses-d3132_run-02_dwi.nii.gz'], 'fieldmap_info': {'suffix': None}, 'dwi_series_pedir': 'j-', 'concatenated_bids_name': 'sub-OAS30001_ses-d3132'}]
220325-19:34:07,957 nipype.workflow IMPORTANT:
Creating dwi processing workflow "dwi_preproc_ses_d0757_wf" to produce output sub-OAS30001_ses-d0757 (1.02 GB / 36 DWIs). Memory resampled/largemem=1.06/1.08 GB.
220325-19:34:22,984 nipype.workflow INFO:
Automatically using 5, 5, 5 window for dwidenoise
220325-19:38:03,678 nipype.workflow INFO:
Using 8 threads in eddy
220325-19:44:25,3 nipype.workflow IMPORTANT:
Creating dwi processing workflow "dwi_preproc_ses_d3132_wf" to produce output sub-OAS30001_ses-d3132 (1.05 GB / 58 DWIs). Memory resampled/largemem=1.18/1.23 GB.
220325-19:44:40,25 nipype.workflow INFO:
Automatically using 5, 5, 5 window for dwidenoise
220325-19:49:30,606 nipype.workflow INFO:
Using 8 threads in eddy
220325-19:56:05,885 nipype.workflow IMPORTANT:
Works derived from this qsiprep execution should include the following boilerplate:
Preprocessing was performed using *QSIPrep* 0.15.1,
which is based on *Nipype* 1.7.0
(@nipype1; @nipype2; RRID:SCR_002502).
Anatomical data preprocessing
: A total of 3 T1-weighted (T1w) images were found within the input
BIDS dataset.
All of them were corrected for intensity non-uniformity (INU)
using `N4BiasFieldCorrection` [@n4, ANTs 2.3.1].
A T1w-reference map was computed after registration of
3 T1w images (after INU-correction) using
`mri_robust_template` [FreeSurfer 6.0.1, @fs_template].
The T1w-reference was then skull-stripped using `antsBrainExtraction.sh`
(ANTs 2.3.1), using OASIS as target template.
Spatial normalization to the ICBM 152 Nonlinear Asymmetrical
template version 2009c [@mni, RRID:SCR_008796] was performed
through nonlinear registration with `antsRegistration`
[ANTs 2.3.1, RRID:SCR_004757, @ants], using
brain-extracted versions of both T1w volume and template.
Brain tissue segmentation of cerebrospinal fluid (CSF),
white-matter (WM) and gray-matter (GM) was performed on
the brain-extracted T1w using `FAST` [FSL 6.0.5.1:57b01774, RRID:SCR_002823,
@fsl_fast].
Diffusion data preprocessing
: Any images with a b-value less than 100 s/mm^2 were treated as a *b*=0 image. MP-PCA denoising as implemented in MRtrix3's `dwidenoise`[@dwidenoise1] was applied with a 5-voxel window. After MP-PCA, B1 field inhomogeneity was corrected using `dwibiascorrect` from MRtrix3 with the N4 algorithm [@n4]. After B1 bias correction, the mean intensity of the DWI series was adjusted so all the mean intensity of the b=0 images matched across eachseparate DWI scanning sequence.
FSL (version 6.0.5.1:57b01774)'s eddy was used for head motion correction and Eddy current correction [@anderssoneddy]. Eddy was configured with a $q$-space smoothing factor of 10, a total of 5 iterations, and 1000 voxels used to estimate hyperparameters. A linear first level model and a linear second level model were used to characterize Eddy current-related spatial distortion. $q$-space coordinates were forcefully assigned to shells. Field offset was attempted to be separated from subject movement. Shells were aligned post-eddy. Eddy's outlier replacement was run [@eddyrepol]. Data were grouped by slice, only including values from slices determined to contain at least 250 intracerebral voxels. Groups deviating by more than 4 standard deviations from the prediction had their data replaced with imputed values. Final interpolation was performed using the `jac` method.
Several confounding time-series were calculated based on the
preprocessed DWI: framewise displacement (FD) using the
implementation in *Nipype* [following the definitions by @power_fd_dvars].
The head-motion estimates calculated in the correction step were also
placed within the corresponding confounds file. Slicewise cross correlation
was also calculated.
Diffusion data preprocessing
: A total of 2 DWI series in the j- distortion group were concatenated, with preprocessing operations performed on individual DWI series before concatenation.Any images with a b-value less than 100 s/mm^2 were treated as a *b*=0 image. MP-PCA denoising as implemented in MRtrix3's `dwidenoise`[@dwidenoise1] was applied with a 5-voxel window. After MP-PCA, B1 field inhomogeneity was corrected using `dwibiascorrect` from MRtrix3 with the N4 algorithm [@n4]. After B1 bias correction, the mean intensity of the DWI series was adjusted so all the mean intensity of the b=0 images matched across eachseparate DWI scanning sequence.
FSL (version 6.0.5.1:57b01774)'s eddy was used for head motion correction and Eddy current correction [@anderssoneddy]. Eddy was configured with a $q$-space smoothing factor of 10, a total of 5 iterations, and 1000 voxels used to estimate hyperparameters. A linear first level model and a linear second level model were used to characterize Eddy current-related spatial distortion. $q$-space coordinates were forcefully assigned to shells. Field offset was attempted to be separated from subject movement. Shells were aligned post-eddy. Eddy's outlier replacement was run [@eddyrepol]. Data were grouped by slice, only including values from slices determined to contain at least 250 intracerebral voxels. Groups deviating by more than 4 standard deviations from the prediction had their data replaced with imputed values. Final interpolation was performed using the `jac` method.
Several confounding time-series were calculated based on the
preprocessed DWI: framewise displacement (FD) using the
implementation in *Nipype* [following the definitions by @power_fd_dvars].
The head-motion estimates calculated in the correction step were also
placed within the corresponding confounds file. Slicewise cross correlation
was also calculated.
The DWI time-series were resampled to ACPC,
generating a *preprocessed DWI run in ACPC space* with 1.2mm isotropic voxels.
Many internal operations of *QSIPrep* use
*Nilearn* 0.9.0 [@nilearn, RRID:SCR_001362] and
*Dipy* [@dipy].
For more details of the pipeline, see [the section corresponding
to workflows in *QSIPrep*'s documentation](https://qsiprep.readthedocs.io/en/latest/workflows.html "QSIPrep's documentation").
### References
[WARNING] This document format requires a nonempty
element.
Please specify either 'title' or 'pagetitle' in the metadata.
Falling back to 'CITATION'
220325-19:56:28,313 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.noise_images" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/noise_images".
220325-19:56:28,334 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.bias_images" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/bias_images".
220325-19:56:28,395 nipype.workflow INFO:
[Node] Executing "bias_images"
220325-19:56:28,398 nipype.workflow INFO:
[Node] Executing "noise_images"
220325-19:56:28,493 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.noise_images" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/noise_images".
220325-19:56:28,524 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.bias_images" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/bias_images".
220325-19:56:28,542 nipype.workflow INFO:
[Node] Finished "bias_images", elapsed time 0.000208s.
220325-19:56:28,551 nipype.workflow INFO:
[Node] Finished "noise_images", elapsed time 0.000209s.
220325-19:56:28,594 nipype.workflow INFO:
[Node] Executing "noise_images"
220325-19:56:28,617 nipype.workflow INFO:
[Node] Executing "bias_images"
220325-19:56:28,736 nipype.workflow INFO:
[Node] Finished "noise_images", elapsed time 0.00022s.
220325-19:56:28,761 nipype.workflow INFO:
[Node] Finished "bias_images", elapsed time 0.00024s.
220325-19:56:28,919 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.output_grid_wf.autobox_template" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/output_grid_wf/autobox_template".
220325-19:56:28,969 nipype.workflow INFO:
[Node] Executing "autobox_template"
220325-19:56:33,473 nipype.workflow INFO:
[Node] Finished "autobox_template", elapsed time 4.41487s.
220325-19:56:35,467 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.conform_dwis02" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/conform_dwis02".
220325-19:56:35,489 nipype.workflow INFO:
[Node] Executing "conform_dwis02"
220325-19:56:35,646 nipype.interface INFO:
Not applying reorientation to /home/elevchenko/Entropy/raw_data/controls/sub-OAS30001/ses-d3132/dwi/sub-OAS30001_ses-d3132_run-02_dwi.nii.gz: already in LAS
220325-19:56:35,647 nipype.workflow INFO:
[Node] Finished "conform_dwis02", elapsed time 0.127696s.
220325-19:56:35,701 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.output_grid_wf.deoblique_autobox" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/output_grid_wf/deoblique_autobox".
220325-19:56:35,710 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.conform_dwis01" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/conform_dwis01".
220325-19:56:35,711 nipype.workflow INFO:
[Node] Executing "deoblique_autobox"
220325-19:56:35,732 nipype.workflow INFO:
[Node] Executing "conform_dwis01"
220325-19:56:35,812 nipype.interface INFO:
Not applying reorientation to /home/elevchenko/Entropy/raw_data/controls/sub-OAS30001/ses-d0757/dwi/sub-OAS30001_ses-d0757_dwi.nii.gz: already in LAS
220325-19:56:35,824 nipype.workflow INFO:
[Node] Finished "conform_dwis01", elapsed time 0.072708s.
220325-19:56:36,323 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.bidssrc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/bidssrc".
220325-19:56:36,335 nipype.workflow INFO:
[Node] Executing "bidssrc"
220325-19:56:36,352 nipype.interface WARNING:
No 'flair' images found for sub-
220325-19:56:36,352 nipype.interface WARNING:
No 'fmap' images found for sub-
220325-19:56:36,352 nipype.interface WARNING:
No 'sbref' images found for sub-
220325-19:56:36,352 nipype.interface WARNING:
No 'roi' images found for sub-
220325-19:56:36,353 nipype.workflow INFO:
[Node] Finished "bidssrc", elapsed time 0.000635s.
220325-19:56:36,642 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.conform_dwis01" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/conform_dwis01".
220325-19:56:36,651 nipype.workflow INFO:
[Node] Executing "conform_dwis01"
220325-19:56:36,699 nipype.interface INFO:
Not applying reorientation to /home/elevchenko/Entropy/raw_data/controls/sub-OAS30001/ses-d3132/dwi/sub-OAS30001_ses-d3132_run-01_dwi.nii.gz: already in LAS
220325-19:56:36,701 nipype.workflow INFO:
[Node] Finished "conform_dwis01", elapsed time 0.032221s.
220325-19:56:37,869 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_raw_images" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_raw_images".
220325-19:56:37,870 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.conformation_reports" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/conformation_reports".
220325-19:56:37,884 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_bvals" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_bvals".
220325-19:56:37,885 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_bvecs" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_bvecs".
220325-19:56:37,918 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_raw_images" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_raw_images".
220325-19:56:37,933 nipype.workflow INFO:
[Node] Finished "deoblique_autobox", elapsed time 2.202003s.
220325-19:56:37,934 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.conformation_reports" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/conformation_reports".
220325-19:56:37,939 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_bvals" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_bvals".
220325-19:56:37,940 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_bvecs" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_bvecs".
220325-19:56:40,538 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.output_grid_wf.resample_to_voxel_size" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/output_grid_wf/resample_to_voxel_size".
220325-19:56:40,570 nipype.workflow INFO:
[Node] Executing "resample_to_voxel_size"
220325-19:56:44,42 nipype.workflow INFO:
[Node] Finished "resample_to_voxel_size", elapsed time 3.41206s.
220325-19:56:53,102 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions".
220325-19:56:54,946 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_02_dwi_wf.denoiser" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_02_dwi_wf/denoiser".
220325-19:56:54,969 nipype.workflow INFO:
[Node] Executing "denoiser"
220325-19:56:55,808 nipype.workflow INFO:
[Node] Executing "conformed_raw_images"
220325-19:56:55,844 nipype.workflow INFO:
[Node] Finished "conformed_raw_images", elapsed time 0.000221s.
220325-19:56:55,972 nipype.workflow INFO:
[Node] Executing "conformed_bvecs"
220325-19:56:55,989 nipype.workflow INFO:
[Node] Finished "conformed_bvecs", elapsed time 0.000229s.
220325-19:56:56,120 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d0757_dwi_wf.denoiser" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d0757_dwi_wf/denoiser".
220325-19:56:56,143 nipype.workflow INFO:
[Node] Executing "denoiser"
220325-19:56:56,680 nipype.workflow INFO:
[Node] Executing "conformed_bvecs"
220325-19:56:56,681 nipype.workflow INFO:
[Node] Finished "conformed_bvecs", elapsed time 0.000193s.
220325-19:56:57,837 nipype.workflow INFO:
[Node] Executing "t1_template_dimensions"
220325-19:56:57,865 nipype.workflow INFO:
[Node] Executing "conformed_bvals"
220325-19:56:57,921 nipype.workflow INFO:
[Node] Finished "conformed_bvals", elapsed time 0.00024s.
220325-19:56:58,34 nipype.workflow INFO:
[Node] Executing "conformation_reports"
220325-19:56:58,53 nipype.workflow INFO:
[Node] Finished "t1_template_dimensions", elapsed time 0.21535s.
220325-19:56:58,65 nipype.workflow INFO:
[Node] Finished "conformation_reports", elapsed time 0.000228s.
220325-19:56:58,202 nipype.workflow INFO:
[Node] Executing "conformed_raw_images"
220325-19:56:58,203 nipype.workflow INFO:
[Node] Finished "conformed_raw_images", elapsed time 0.000151s.
220325-19:56:58,613 nipype.workflow INFO:
[Node] Executing "conformation_reports"
220325-19:56:58,644 nipype.workflow INFO:
[Node] Finished "conformation_reports", elapsed time 0.000241s.
220325-19:56:59,192 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_01_dwi_wf.denoiser" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_01_dwi_wf/denoiser".
220325-19:56:59,216 nipype.workflow INFO:
[Node] Executing "denoiser"
220325-19:56:59,605 nipype.workflow INFO:
[Node] Executing "conformed_bvals"
220325-19:56:59,637 nipype.workflow INFO:
[Node] Finished "conformed_bvals", elapsed time 0.000233s.
220325-19:56:59,709 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_derivatives_wf/t1_name".
220325-19:57:08,216 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.raw_merge" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/raw_merge".
220325-19:57:08,233 nipype.workflow INFO:
[Node] Executing "raw_merge"
220325-19:57:12,619 nipype.workflow INFO:
[Node] Executing "t1_name"
220325-19:57:12,654 nipype.workflow INFO:
[Node] Finished "t1_name", elapsed time 0.018482s.
220325-19:57:14,782 nipype.workflow INFO:
[Node] Setting-up "_t1_conform0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0".
220325-19:57:14,796 nipype.workflow INFO:
[Node] Executing "_t1_conform0"
220325-19:57:15,168 nipype.interface WARNING:
Removing obliquity from image affine
220325-19:57:15,947 nipype.workflow INFO:
[Node] Setting-up "_t1_conform1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform1".
220325-19:57:15,960 nipype.workflow INFO:
[Node] Executing "_t1_conform1"
220325-19:57:16,331 nipype.interface WARNING:
Removing obliquity from image affine
220325-19:57:16,643 nipype.workflow INFO:
[Node] Finished "_t1_conform0", elapsed time 1.8185259999999999s.
220325-19:57:16,873 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.raw_merge" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/raw_merge".
220325-19:57:16,896 nipype.workflow INFO:
[Node] Executing "raw_merge"
220325-19:57:17,36 nipype.workflow INFO:
[Node] Finished "raw_merge", elapsed time 8.771832s.
220325-19:57:17,651 nipype.workflow INFO:
[Node] Setting-up "_t1_conform2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform2".
220325-19:57:17,675 nipype.workflow INFO:
[Node] Executing "_t1_conform2"
220325-19:57:17,777 nipype.workflow INFO:
[Node] Finished "_t1_conform1", elapsed time 1.787071s.
220325-19:57:18,45 nipype.interface WARNING:
Removing obliquity from image affine
220325-19:57:19,513 nipype.workflow INFO:
[Node] Finished "_t1_conform2", elapsed time 1.806173s.
220325-19:57:19,547 nipype.workflow INFO:
[Node] Finished "raw_merge", elapsed time 2.620122s.
220325-19:57:31,987 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.test_pre_hmc_connect" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/test_pre_hmc_connect".
220325-19:57:32,143 nipype.workflow INFO:
[Node] Executing "test_pre_hmc_connect"
220325-19:57:32,174 nipype.workflow INFO:
[Node] Finished "test_pre_hmc_connect", elapsed time 7.3e-05s.
220325-19:57:32,174 nipype.workflow WARNING:
Storing result file without outputs
220325-19:57:35,718 nipype.workflow INFO:
[Node] Setting-up "_t1_conform0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0".
220325-19:57:35,720 nipype.workflow INFO:
[Node] Cached "_t1_conform0" - collecting precomputed outputs
220325-19:57:35,721 nipype.workflow INFO:
[Node] "_t1_conform0" found cached.
220325-19:57:35,721 nipype.workflow INFO:
[Node] Setting-up "_t1_conform1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform1".
220325-19:57:35,723 nipype.workflow INFO:
[Node] Cached "_t1_conform1" - collecting precomputed outputs
220325-19:57:35,723 nipype.workflow INFO:
[Node] "_t1_conform1" found cached.
220325-19:57:35,724 nipype.workflow INFO:
[Node] Setting-up "_t1_conform2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform2".
220325-19:57:35,734 nipype.workflow INFO:
[Node] Cached "_t1_conform2" - collecting precomputed outputs
220325-19:57:35,735 nipype.workflow INFO:
[Node] "_t1_conform2" found cached.
220325-19:57:36,178 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.test_pre_hmc_connect" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/test_pre_hmc_connect".
220325-19:57:36,255 nipype.workflow INFO:
[Node] Executing "test_pre_hmc_connect"
220325-19:57:36,272 nipype.workflow INFO:
[Node] Finished "test_pre_hmc_connect", elapsed time 5.6e-05s.
220325-19:57:36,273 nipype.workflow WARNING:
Storing result file without outputs
220325-19:57:37,292 nipype.interface INFO:
Generating denoising visual report
220325-19:57:39,789 nipype.workflow INFO:
[Node] Setting-up "_n4_correct0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0".
220325-19:57:39,798 nipype.workflow INFO:
[Node] Executing "_n4_correct0"
220325-19:57:40,28 nipype.workflow INFO:
[Node] Setting-up "_n4_correct1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1".
220325-19:57:40,34 nipype.workflow INFO:
[Node] Setting-up "_n4_correct2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2".
220325-19:57:40,57 nipype.workflow INFO:
[Node] Executing "_n4_correct1"
220325-19:57:40,62 nipype.workflow INFO:
[Node] Executing "_n4_correct2"
220325-19:58:00,330 nipype.interface INFO:
Generating denoising visual report
220325-19:58:00,339 nipype.interface INFO:
Generating denoising visual report
220325-19:58:16,248 nipype.workflow INFO:
[Node] Finished "denoiser", elapsed time 79.507088s.
220325-19:58:38,794 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d0757_dwi_wf.get_b0s" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d0757_dwi_wf/get_b0s".
220325-19:58:38,825 nipype.workflow INFO:
[Node] Executing "get_b0s"
220325-19:58:40,801 nipype.workflow INFO:
[Node] Finished "get_b0s", elapsed time 1.907552s.
220325-19:58:42,248 nipype.workflow INFO:
[Node] Finished "denoiser", elapsed time 102.618954s.
220325-19:58:43,230 nipype.workflow INFO:
[Node] Finished "denoiser", elapsed time 107.325498s.
220325-19:59:02,41 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_02_dwi_wf.get_b0s" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_02_dwi_wf/get_b0s".
220325-19:59:02,49 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_01_dwi_wf.get_b0s" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_01_dwi_wf/get_b0s".
220325-19:59:02,76 nipype.workflow INFO:
[Node] Executing "get_b0s"
220325-19:59:02,87 nipype.workflow INFO:
[Node] Executing "get_b0s"
220325-19:59:02,431 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d0757_dwi_wf.quick_mask" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d0757_dwi_wf/quick_mask".
220325-19:59:02,468 nipype.workflow INFO:
[Node] Executing "quick_mask"
220325-19:59:04,444 nipype.workflow INFO:
[Node] Finished "get_b0s", elapsed time 2.323386s.
220325-19:59:04,713 nipype.workflow INFO:
[Node] Finished "quick_mask", elapsed time 2.207259s.
220325-19:59:04,868 nipype.workflow INFO:
[Node] Finished "get_b0s", elapsed time 2.740269s.
220325-19:59:14,963 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_02_dwi_wf.quick_mask" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_02_dwi_wf/quick_mask".
220325-19:59:14,986 nipype.workflow INFO:
[Node] Executing "quick_mask"
220325-19:59:17,178 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d0757_dwi_wf.biascorr" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d0757_dwi_wf/biascorr".
220325-19:59:17,422 nipype.workflow INFO:
[Node] Executing "biascorr"
220325-19:59:17,924 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_01_dwi_wf.quick_mask" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_01_dwi_wf/quick_mask".
220325-19:59:17,935 nipype.workflow INFO:
[Node] Executing "quick_mask"
220325-19:59:18,180 nipype.workflow INFO:
[Node] Finished "quick_mask", elapsed time 3.162518s.
220325-19:59:20,791 nipype.workflow INFO:
[Node] Finished "quick_mask", elapsed time 2.82494s.
220325-19:59:29,564 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_02_dwi_wf.biascorr" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_02_dwi_wf/biascorr".
220325-19:59:29,664 nipype.workflow INFO:
[Node] Executing "biascorr"
220325-19:59:33,832 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_01_dwi_wf.biascorr" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_01_dwi_wf/biascorr".
220325-19:59:34,17 nipype.workflow INFO:
[Node] Executing "biascorr"
220325-19:59:34,931 nipype.interface INFO:
Generating denoising visual report
220325-19:59:57,530 nipype.interface INFO:
Generating denoising visual report
220325-20:00:00,282 nipype.interface INFO:
Generating denoising visual report
220325-20:00:17,384 nipype.workflow INFO:
[Node] Finished "_n4_correct2", elapsed time 155.891165s.
220325-20:00:26,743 nipype.workflow INFO:
[Node] Finished "_n4_correct1", elapsed time 165.228988s.
220325-20:00:26,805 nipype.workflow INFO:
[Node] Finished "biascorr", elapsed time 68.616709s.
220325-20:00:27,905 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d0757_dwi_wf.merge_confounds" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d0757_dwi_wf/merge_confounds".
220325-20:00:27,908 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_images" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_images".
220325-20:00:29,802 nipype.workflow INFO:
[Node] Finished "_n4_correct0", elapsed time 168.343862s.
220325-20:00:32,90 nipype.workflow INFO:
[Node] Setting-up "_n4_correct0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0".
220325-20:00:32,93 nipype.workflow INFO:
[Node] Cached "_n4_correct0" - collecting precomputed outputs
220325-20:00:32,93 nipype.workflow INFO:
[Node] "_n4_correct0" found cached.
220325-20:00:32,94 nipype.workflow INFO:
[Node] Setting-up "_n4_correct1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1".
220325-20:00:32,96 nipype.workflow INFO:
[Node] Cached "_n4_correct1" - collecting precomputed outputs
220325-20:00:32,96 nipype.workflow INFO:
[Node] "_n4_correct1" found cached.
220325-20:00:32,96 nipype.workflow INFO:
[Node] Setting-up "_n4_correct2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct2".
220325-20:00:32,100 nipype.workflow INFO:
[Node] Cached "_n4_correct2" - collecting precomputed outputs
220325-20:00:32,100 nipype.workflow INFO:
[Node] "_n4_correct2" found cached.
220325-20:00:36,709 nipype.workflow INFO:
[Node] Finished "biascorr", elapsed time 62.248411s.
220325-20:00:37,898 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_01_dwi_wf.merge_confounds" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_01_dwi_wf/merge_confounds".
220325-20:00:39,63 nipype.workflow INFO:
[Node] Finished "biascorr", elapsed time 69.035231s.
220325-20:00:39,615 nipype.workflow INFO:
[Node] Executing "conformed_images"
220325-20:00:39,616 nipype.workflow INFO:
[Node] Executing "merge_confounds"
220325-20:00:39,669 nipype.workflow INFO:
[Node] Finished "merge_confounds", elapsed time 0.000274s.
220325-20:00:39,676 nipype.workflow INFO:
[Node] Finished "conformed_images", elapsed time 0.000335s.
220325-20:00:39,943 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_02_dwi_wf.merge_confounds" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_02_dwi_wf/merge_confounds".
220325-20:00:39,945 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_images" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_images".
220325-20:00:40,998 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.anat_template_wf.t1_merge" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_merge".
220325-20:00:41,12 nipype.workflow INFO:
[Node] Executing "t1_merge"
220325-20:00:50,452 nipype.workflow INFO:
[Node] Executing "merge_confounds"
220325-20:00:50,483 nipype.workflow INFO:
[Node] Finished "merge_confounds", elapsed time 0.000248s.
220325-20:00:51,947 nipype.workflow INFO:
[Node] Executing "conformed_images"
220325-20:00:52,3 nipype.workflow INFO:
[Node] Finished "conformed_images", elapsed time 0.000245s.
220325-20:00:52,372 nipype.workflow INFO:
[Node] Executing "merge_confounds"
220325-20:00:52,393 nipype.workflow INFO:
[Node] Finished "merge_confounds", elapsed time 0.00027s.
220325-20:00:54,102 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_02_dwi_wf.hstack_confounds" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_02_dwi_wf/hstack_confounds".
220325-20:00:54,126 nipype.workflow INFO:
[Node] Executing "hstack_confounds"
220325-20:00:54,198 nipype.workflow INFO:
[Node] Finished "hstack_confounds", elapsed time 0.070993s.
220325-20:00:56,161 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d0757_dwi_wf.hstack_confounds" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d0757_dwi_wf/hstack_confounds".
220325-20:00:56,223 nipype.workflow INFO:
[Node] Executing "hstack_confounds"
220325-20:00:56,255 nipype.workflow INFO:
[Node] Finished "hstack_confounds", elapsed time 0.013475s.
220325-20:00:57,751 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.denoising_confounds" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/denoising_confounds".
220325-20:00:57,840 nipype.workflow INFO:
[Node] Executing "denoising_confounds"
220325-20:00:57,841 nipype.workflow INFO:
[Node] Finished "denoising_confounds", elapsed time 0.000203s.
220325-20:00:59,836 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.merge_dwis" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/merge_dwis".
220325-20:00:59,854 nipype.workflow INFO:
[Node] Executing "merge_dwis"
220325-20:01:00,650 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_d3132_run_01_dwi_wf.hstack_confounds" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_d3132_run_01_dwi_wf/hstack_confounds".
220325-20:01:00,667 nipype.workflow INFO:
[Node] Executing "hstack_confounds"
220325-20:01:00,694 nipype.workflow INFO:
[Node] Finished "hstack_confounds", elapsed time 0.025604s.
220325-20:01:00,708 nipype.workflow INFO:
[Node] Finished "merge_dwis", elapsed time 0.853283s.
220325-20:01:01,760 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.denoising_confounds" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/denoising_confounds".
220325-20:01:01,780 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.gather_inputs" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/gather_inputs".
220325-20:01:02,65 nipype.workflow INFO:
[Node] Executing "gather_inputs"
220325-20:01:02,93 nipype.workflow INFO:
[Node] Executing "denoising_confounds"
220325-20:01:02,94 nipype.workflow INFO:
[Node] Finished "denoising_confounds", elapsed time 0.000209s.
220325-20:01:04,214 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.merge_dwis" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/merge_dwis".
220325-20:01:04,251 nipype.workflow INFO:
[Node] Executing "merge_dwis"
220325-20:01:04,649 nipype.workflow INFO:
[Node] Finished "gather_inputs", elapsed time 2.583468s.
220325-20:01:05,881 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.distorted_merge" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/distorted_merge".
220325-20:01:05,911 nipype.workflow INFO:
[Node] Executing "distorted_merge"
220325-20:01:06,96 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.enhance_pre_sdc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/enhance_pre_sdc".
220325-20:01:06,125 nipype.workflow INFO:
[Node] Executing "enhance_pre_sdc"
file none does not exist .
220325-20:01:08,585 nipype.workflow INFO:
[Node] Finished "distorted_merge", elapsed time 2.673067s.
220325-20:01:12,871 nipype.workflow INFO:
[Node] Finished "enhance_pre_sdc", elapsed time 6.744801s.
220325-20:01:15,744 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.dwi_qc_wf.raw_src" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_src".
220325-20:01:15,960 nipype.workflow INFO:
[Node] Executing "raw_src"
220325-20:01:16,739 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_src" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src".
220325-20:01:16,745 nipype.workflow INFO:
[Node] Finished "merge_dwis", elapsed time 12.492487s.
220325-20:01:16,876 nipype.workflow INFO:
[Node] Executing "raw_src"
220325-20:01:17,779 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_src" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src".
220325-20:01:17,786 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.gather_inputs" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/gather_inputs".
220325-20:01:17,787 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.dwi_qc_wf.raw_src" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_src".
220325-20:01:17,980 nipype.workflow INFO:
[Node] Executing "raw_src"
220325-20:01:18,16 nipype.workflow INFO:
[Node] Executing "gather_inputs"
220325-20:01:18,17 nipype.workflow INFO:
[Node] Executing "raw_src"
220325-20:01:22,286 nipype.workflow INFO:
[Node] Finished "raw_src", elapsed time 6.325708s.
220325-20:01:22,644 nipype.workflow INFO:
[Node] Finished "raw_src", elapsed time 5.767084s.
220325-20:01:23,844 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_src_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc".
220325-20:01:23,857 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_gqi" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi".
220325-20:01:23,888 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi".
220325-20:01:23,890 nipype.workflow INFO:
[Node] Executing "raw_gqi"
220325-20:01:23,898 nipype.workflow INFO:
[Node] Executing "raw_src_qc"
220325-20:01:23,907 nipype.workflow INFO:
[Node] Executing "raw_gqi"
220325-20:01:26,128 nipype.interface INFO:
DSI Studio Feb 22 2022, Fang-Cheng Yeh
source=/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc/sub-OAS30001_ses-d0757_dwi_merged.src.gz
action=qc
checking /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc/sub-OAS30001_ses-d0757_dwi_merged.src.gz
220325-20:01:26,130 nipype.workflow INFO:
[Node] Finished "raw_src_qc", elapsed time 2.231196s.
220325-20:01:27,722 nipype.workflow INFO:
[Node] Finished "gather_inputs", elapsed time 9.704806s.
220325-20:01:28,84 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.dwi_qc_wf.raw_src_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc".
220325-20:01:28,120 nipype.workflow INFO:
[Node] Executing "raw_src_qc"
220325-20:01:29,975 nipype.interface INFO:
DSI Studio Feb 22 2022, Fang-Cheng Yeh
source=/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc/sub-OAS30001_ses-d0757_dwi_merged.src.gz
action=qc
checking /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc/sub-OAS30001_ses-d0757_dwi_merged.src.gz
220325-20:01:29,977 nipype.workflow INFO:
[Node] Finished "raw_src_qc", elapsed time 1.85582s.
220325-20:01:29,993 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.enhance_pre_sdc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/enhance_pre_sdc".
220325-20:01:29,993 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.distorted_merge" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/distorted_merge".
220325-20:01:30,15 nipype.workflow INFO:
[Node] Executing "enhance_pre_sdc"
220325-20:01:30,21 nipype.workflow INFO:
[Node] Executing "distorted_merge"
file none does not exist .
220325-20:01:34,647 nipype.workflow INFO:
[Node] Finished "distorted_merge", elapsed time 4.6254729999999995s.
220325-20:01:36,22 nipype.workflow INFO:
[Node] Finished "enhance_pre_sdc", elapsed time 6.005849s.
220325-20:01:39,534 nipype.workflow INFO:
[Node] Finished "raw_src", elapsed time 21.504745s.
220325-20:01:39,916 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi".
220325-20:01:39,918 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.dwi_qc_wf.raw_src_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc".
220325-20:01:39,938 nipype.workflow INFO:
[Node] Executing "raw_gqi"
220325-20:01:39,945 nipype.workflow INFO:
[Node] Executing "raw_src_qc"
220325-20:01:41,458 nipype.workflow INFO:
[Node] Finished "raw_src", elapsed time 23.475874s.
220325-20:01:42,26 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_src_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc".
220325-20:01:42,31 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_gqi" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi".
220325-20:01:42,46 nipype.workflow INFO:
[Node] Executing "raw_src_qc"
220325-20:01:42,49 nipype.workflow INFO:
[Node] Executing "raw_gqi"
220325-20:01:42,800 nipype.interface INFO:
DSI Studio Feb 22 2022, Fang-Cheng Yeh
source=/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz
action=qc
checking /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz
220325-20:01:42,801 nipype.workflow INFO:
[Node] Finished "raw_src_qc", elapsed time 2.855076s.
220325-20:01:45,211 nipype.interface INFO:
DSI Studio Feb 22 2022, Fang-Cheng Yeh
source=/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz
action=qc
checking /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz
220325-20:01:45,212 nipype.workflow INFO:
[Node] Finished "raw_src_qc", elapsed time 3.164751s.
220325-20:04:18,233 nipype.workflow INFO:
[Node] Finished "t1_merge", elapsed time 217.200133s.
220325-20:04:20,27 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.anat_template_wf.t1_reorient" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/t1_reorient".
220325-20:04:20,40 nipype.workflow INFO:
[Node] Executing "t1_reorient"
220325-20:04:20,76 nipype.workflow INFO:
[Node] Finished "t1_reorient", elapsed time 0.034929s.
220325-20:04:21,931 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.skullstrip_wf.t1_skull_strip" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/skullstrip_wf/t1_skull_strip".
220325-20:04:21,934 nipype.workflow INFO:
[Node] Setting-up "_lta_to_fsl0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/lta_to_fsl/mapflow/_lta_to_fsl0".
220325-20:04:21,934 nipype.workflow INFO:
[Node] Setting-up "_lta_to_fsl1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/lta_to_fsl/mapflow/_lta_to_fsl1".
220325-20:04:21,937 nipype.workflow INFO:
[Node] Setting-up "_lta_to_fsl2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/lta_to_fsl/mapflow/_lta_to_fsl2".
220325-20:04:21,943 nipype.workflow INFO:
[Node] Executing "_lta_to_fsl1"
220325-20:04:21,943 nipype.workflow INFO:
[Node] Executing "_lta_to_fsl0"
220325-20:04:21,947 nipype.workflow INFO:
[Node] Executing "_lta_to_fsl2"
220325-20:04:21,959 nipype.workflow INFO:
[Node] Executing "t1_skull_strip"
220325-20:04:22,358 nipype.workflow INFO:
[Node] Finished "_lta_to_fsl0", elapsed time 0.414059s.
220325-20:04:22,389 nipype.workflow INFO:
[Node] Finished "_lta_to_fsl2", elapsed time 0.441124s.
220325-20:04:22,397 nipype.workflow INFO:
[Node] Finished "_lta_to_fsl1", elapsed time 0.453041s.
220325-20:04:24,49 nipype.workflow INFO:
[Node] Setting-up "_lta_to_fsl0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/lta_to_fsl/mapflow/_lta_to_fsl0".
220325-20:04:24,52 nipype.workflow INFO:
[Node] Cached "_lta_to_fsl0" - collecting precomputed outputs
220325-20:04:24,52 nipype.workflow INFO:
[Node] "_lta_to_fsl0" found cached.
220325-20:04:24,53 nipype.workflow INFO:
[Node] Setting-up "_lta_to_fsl1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/lta_to_fsl/mapflow/_lta_to_fsl1".
220325-20:04:24,55 nipype.workflow INFO:
[Node] Cached "_lta_to_fsl1" - collecting precomputed outputs
220325-20:04:24,55 nipype.workflow INFO:
[Node] "_lta_to_fsl1" found cached.
220325-20:04:24,56 nipype.workflow INFO:
[Node] Setting-up "_lta_to_fsl2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/lta_to_fsl/mapflow/_lta_to_fsl2".
220325-20:04:24,58 nipype.workflow INFO:
[Node] Cached "_lta_to_fsl2" - collecting precomputed outputs
220325-20:04:24,58 nipype.workflow INFO:
[Node] "_lta_to_fsl2" found cached.
current dir /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi
input src /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz
split src name sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz
search target /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz*gqi*.fib.gz
220325-20:04:29,840 nipype.workflow INFO:
[Node] Finished "raw_gqi", elapsed time 169.901601s.
220325-20:04:32,7 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc".
220325-20:04:32,26 nipype.workflow INFO:
[Node] Executing "raw_fib_qc"
220325-20:04:33,996 nipype.workflow INFO:
[Node] Setting-up "_fsl_to_itk1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/fsl_to_itk/mapflow/_fsl_to_itk1".
220325-20:04:33,999 nipype.workflow INFO:
[Node] Setting-up "_fsl_to_itk2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/fsl_to_itk/mapflow/_fsl_to_itk2".
220325-20:04:34,1 nipype.workflow INFO:
[Node] Setting-up "_fsl_to_itk0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/fsl_to_itk/mapflow/_fsl_to_itk0".
220325-20:04:34,11 nipype.workflow INFO:
[Node] Executing "_fsl_to_itk1"
220325-20:04:34,18 nipype.workflow INFO:
[Node] Executing "_fsl_to_itk0"
220325-20:04:34,24 nipype.workflow INFO:
[Node] Executing "_fsl_to_itk2"
220325-20:04:36,451 nipype.interface INFO:
DSI Studio Feb 22 2022, Fang-Cheng Yeh
source=/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz.odf.gqi.1.25.fib.gz
action=qc
loading /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz.odf.gqi.1.25.fib.gz...
220325-20:04:36,461 nipype.workflow INFO:
[Node] Finished "raw_fib_qc", elapsed time 4.434326s.
220325-20:04:36,478 nipype.workflow INFO:
[Node] Finished "_fsl_to_itk1", elapsed time 2.46625s.
220325-20:04:37,329 nipype.workflow INFO:
[Node] Finished "_fsl_to_itk2", elapsed time 3.303944s.
220325-20:04:37,355 nipype.workflow INFO:
[Node] Finished "_fsl_to_itk0", elapsed time 3.335919s.
220325-20:04:37,998 nipype.workflow INFO:
[Node] Setting-up "_fsl_to_itk0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/fsl_to_itk/mapflow/_fsl_to_itk0".
220325-20:04:38,1 nipype.workflow INFO:
[Node] Cached "_fsl_to_itk0" - collecting precomputed outputs
220325-20:04:38,1 nipype.workflow INFO:
[Node] "_fsl_to_itk0" found cached.
220325-20:04:38,2 nipype.workflow INFO:
[Node] Setting-up "_fsl_to_itk1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/fsl_to_itk/mapflow/_fsl_to_itk1".
220325-20:04:38,5 nipype.workflow INFO:
[Node] Cached "_fsl_to_itk1" - collecting precomputed outputs
220325-20:04:38,6 nipype.workflow INFO:
[Node] "_fsl_to_itk1" found cached.
220325-20:04:38,6 nipype.workflow INFO:
[Node] Setting-up "_fsl_to_itk2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/anat_template_wf/fsl_to_itk/mapflow/_fsl_to_itk2".
220325-20:04:38,9 nipype.workflow INFO:
[Node] Cached "_fsl_to_itk2" - collecting precomputed outputs
220325-20:04:38,9 nipype.workflow INFO:
[Node] "_fsl_to_itk2" found cached.
220325-20:04:55,357 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.dwi_qc_wf.merged_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/dwi_qc_wf/merged_qc".
220325-20:04:55,387 nipype.workflow INFO:
[Node] Executing "merged_qc"
220325-20:04:55,411 nipype.workflow INFO:
[Node] Finished "merged_qc", elapsed time 0.02266s.
current dir /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi
input src /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz
split src name sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz
search target /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz*gqi*.fib.gz
220325-20:04:58,909 nipype.workflow INFO:
[Node] Finished "raw_gqi", elapsed time 196.820679s.
220325-20:05:00,19 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_fib_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc".
220325-20:05:00,68 nipype.workflow INFO:
[Node] Executing "raw_fib_qc"
220325-20:05:03,904 nipype.interface INFO:
DSI Studio Feb 22 2022, Fang-Cheng Yeh
source=/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz.odf.gqi.1.25.fib.gz
action=qc
loading /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc/sub-OAS30001_ses-d3132_run-01_dwi_merged.src.gz.odf.gqi.1.25.fib.gz...
220325-20:05:03,906 nipype.workflow INFO:
[Node] Finished "raw_fib_qc", elapsed time 3.837246s.
current dir /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi
input src /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi/sub-OAS30001_ses-d0757_dwi_merged.src.gz
split src name sub-OAS30001_ses-d0757_dwi_merged.src.gz
search target /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi/sub-OAS30001_ses-d0757_dwi_merged.src.gz*gqi*.fib.gz
220325-20:05:11,129 nipype.workflow INFO:
[Node] Finished "raw_gqi", elapsed time 227.238205s.
220325-20:05:18,210 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.merged_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/merged_qc".
220325-20:05:18,283 nipype.workflow INFO:
[Node] Executing "merged_qc"
220325-20:05:18,293 nipype.workflow INFO:
[Node] Finished "merged_qc", elapsed time 0.009353s.
current dir /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi
input src /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi/sub-OAS30001_ses-d0757_dwi_merged.src.gz
split src name sub-OAS30001_ses-d0757_dwi_merged.src.gz
search target /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi/sub-OAS30001_ses-d0757_dwi_merged.src.gz*gqi*.fib.gz
220325-20:05:18,783 nipype.workflow INFO:
[Node] Finished "raw_gqi", elapsed time 234.874768s.
220325-20:05:19,979 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc".
220325-20:05:20,18 nipype.workflow INFO:
[Node] Executing "raw_fib_qc"
220325-20:05:21,993 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_fib_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc".
220325-20:05:22,20 nipype.workflow INFO:
[Node] Executing "raw_fib_qc"
220325-20:05:23,437 nipype.interface INFO:
DSI Studio Feb 22 2022, Fang-Cheng Yeh
source=/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-OAS30001_ses-d0757_dwi_merged.src.gz.odf.gqi.1.25.fib.gz
action=qc
loading /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-OAS30001_ses-d0757_dwi_merged.src.gz.odf.gqi.1.25.fib.gz...
220325-20:05:23,439 nipype.workflow INFO:
[Node] Finished "raw_fib_qc", elapsed time 3.4203799999999998s.
220325-20:05:23,910 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.dwi_qc_wf.merged_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/dwi_qc_wf/merged_qc".
220325-20:05:23,937 nipype.workflow INFO:
[Node] Executing "merged_qc"
220325-20:05:23,943 nipype.workflow INFO:
[Node] Finished "merged_qc", elapsed time 0.004897s.
220325-20:05:25,49 nipype.interface INFO:
DSI Studio Feb 22 2022, Fang-Cheng Yeh
source=/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc/sub-OAS30001_ses-d0757_dwi_merged.src.gz.odf.gqi.1.25.fib.gz
action=qc
loading /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc/sub-OAS30001_ses-d0757_dwi_merged.src.gz.odf.gqi.1.25.fib.gz...
220325-20:05:25,51 nipype.workflow INFO:
[Node] Finished "raw_fib_qc", elapsed time 2.999065s.
220325-20:05:25,910 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.merged_qc" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/merged_qc".
220325-20:05:25,933 nipype.workflow INFO:
[Node] Executing "merged_qc"
220325-20:05:25,942 nipype.workflow INFO:
[Node] Finished "merged_qc", elapsed time 0.00884s.
220325-20:25:29,557 nipype.workflow INFO:
[Node] Finished "t1_skull_strip", elapsed time 1266.941922s.
220325-20:25:30,640 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.skullstrip_wf.rigid_acpc_align" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/skullstrip_wf/rigid_acpc_align".
220325-20:25:30,655 nipype.workflow INFO:
[Node] Executing "rigid_acpc_align"
220325-20:27:22,938 nipype.workflow INFO:
[Node] Finished "rigid_acpc_align", elapsed time 112.048158s.
220325-20:27:24,701 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.skullstrip_wf.rigid_acpc_resample_brain" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/skullstrip_wf/rigid_acpc_resample_brain".
220325-20:27:24,701 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.skullstrip_wf.rigid_acpc_resample_head" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/skullstrip_wf/rigid_acpc_resample_head".
220325-20:27:24,702 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.skullstrip_wf.rigid_acpc_resample_mask" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/skullstrip_wf/rigid_acpc_resample_mask".
220325-20:27:24,703 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.skullstrip_wf.rigid_acpc_resample_seg" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/skullstrip_wf/rigid_acpc_resample_seg".
220325-20:27:24,724 nipype.workflow INFO:
[Node] Executing "rigid_acpc_resample_head"
220325-20:27:24,724 nipype.workflow INFO:
[Node] Executing "rigid_acpc_resample_mask"
220325-20:27:24,724 nipype.workflow INFO:
[Node] Executing "rigid_acpc_resample_brain"
220325-20:27:24,730 nipype.workflow INFO:
[Node] Executing "rigid_acpc_resample_seg"
220325-20:27:59,570 nipype.workflow INFO:
[Node] Finished "rigid_acpc_resample_brain", elapsed time 34.519561s.
220325-20:28:00,731 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.t1_seg" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/t1_seg".
220325-20:28:00,743 nipype.workflow INFO:
[Node] Executing "t1_seg"
220325-20:28:03,354 nipype.workflow INFO:
[Node] Finished "rigid_acpc_resample_head", elapsed time 38.305322s.
220325-20:28:21,760 nipype.workflow INFO:
[Node] Finished "rigid_acpc_resample_mask", elapsed time 56.714992s.
220325-20:28:22,755 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.t1_2_mni" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/t1_2_mni".
220325-20:28:22,780 nipype.workflow INFO:
[Node] Executing "t1_2_mni"
220325-20:28:22,924 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.register_t1_to_raw" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/register_t1_to_raw".
220325-20:28:22,926 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.register_t1_to_raw" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/register_t1_to_raw".
220325-20:28:22,954 nipype.workflow INFO:
[Node] Executing "register_t1_to_raw"
220325-20:28:22,962 nipype.workflow INFO:
[Node] Executing "register_t1_to_raw"
220325-20:28:24,81 nipype.workflow INFO:
[Node] Finished "rigid_acpc_resample_seg", elapsed time 59.008337s.
220325-20:30:24,39 nipype.workflow INFO:
[Node] Finished "register_t1_to_raw", elapsed time 120.698816s.
220325-20:30:24,918 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.t1_mask_to_b0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/t1_mask_to_b0".
220325-20:30:24,937 nipype.workflow INFO:
[Node] Executing "t1_mask_to_b0"
220325-20:30:32,883 nipype.workflow INFO:
[Node] Finished "t1_mask_to_b0", elapsed time 7.209115s.
220325-20:30:35,12 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.enhance_and_mask_b0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0".
220325-20:30:35,22 nipype.workflow INFO:
[Node] Executing "enhance_and_mask_b0"
file none does not exist .
220325-20:30:45,462 nipype.interface WARNING:
Degenerate Mask case. Using compute_epi_mask
220325-20:30:50,477 nipype.interface WARNING:
Masking appears to have failed. Using a backup method
file none does not exist .
220325-20:30:56,567 nipype.workflow INFO:
[Node] Finished "enhance_and_mask_b0", elapsed time 21.544139s.
220325-20:30:57,3 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.b0_ref_to_lps" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/b0_ref_to_lps".
220325-20:30:57,4 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.b0_ref_mask_to_lps" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/b0_ref_mask_to_lps".
220325-20:30:57,12 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.b0_ref_brain_to_lps" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/b0_ref_brain_to_lps".
220325-20:30:57,15 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.eddy" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/eddy".
220325-20:30:57,15 nipype.workflow INFO:
[Node] Executing "b0_ref_mask_to_lps"
220325-20:30:57,24 nipype.workflow INFO:
[Node] Executing "b0_ref_brain_to_lps"
220325-20:30:57,77 nipype.workflow INFO:
[Node] Executing "eddy"
220325-20:30:57,96 nipype.interface INFO:
Re-orienting /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0/topup_imain_avg_mask.nii.gz to LPS
220325-20:30:57,138 nipype.workflow INFO:
[Node] Finished "b0_ref_mask_to_lps", elapsed time 0.121418s.
220325-20:30:57,534 nipype.workflow INFO:
[Node] Executing "b0_ref_to_lps"
220325-20:30:57,798 nipype.interface INFO:
Re-orienting /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0/topup_imain_avg_brain.nii.gz to LPS
220325-20:30:58,178 nipype.interface INFO:
Re-orienting /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0/topup_imain_avg_unbiasedsharpened.nii.gz to LPS
220325-20:30:58,402 nipype.workflow INFO:
[Node] Finished "b0_ref_brain_to_lps", elapsed time 1.376354s.
220325-20:30:58,644 nipype.workflow INFO:
[Node] Finished "b0_ref_to_lps", elapsed time 1.108397s.
220325-20:30:59,40 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.b0_anat_coreg.b0_to_anat" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/b0_anat_coreg/b0_to_anat".
220325-20:30:59,67 nipype.workflow INFO:
[Node] Executing "b0_to_anat"
220325-20:31:11,703 nipype.workflow INFO:
[Node] Finished "t1_seg", elapsed time 190.958775s.
220325-20:31:13,87 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.seg2msks" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/seg2msks".
220325-20:31:13,98 nipype.workflow INFO:
[Node] Executing "seg2msks"
220325-20:31:15,556 nipype.workflow INFO:
[Node] Finished "seg2msks", elapsed time 2.436267s.
220325-20:31:17,211 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.seg_rpt" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/seg_rpt".
220325-20:31:17,228 nipype.workflow INFO:
[Node] Executing "seg_rpt"
220325-20:32:32,948 nipype.workflow INFO:
[Node] Finished "seg_rpt", elapsed time 75.710289s.
220325-20:32:36,5 nipype.workflow INFO:
[Node] Finished "register_t1_to_raw", elapsed time 252.78102s.
220325-20:32:37,358 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.t1_mask_to_b0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/t1_mask_to_b0".
220325-20:32:37,372 nipype.workflow INFO:
[Node] Executing "t1_mask_to_b0"
220325-20:33:02,668 nipype.workflow INFO:
[Node] Finished "t1_mask_to_b0", elapsed time 24.084074s.
220325-20:33:03,626 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.enhance_and_mask_b0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0".
220325-20:33:03,665 nipype.workflow INFO:
[Node] Executing "enhance_and_mask_b0"
file none does not exist .
220325-20:33:23,608 nipype.interface WARNING:
Degenerate Mask case. Using compute_epi_mask
file none does not exist .
220325-20:33:52,844 nipype.workflow INFO:
[Node] Finished "enhance_and_mask_b0", elapsed time 49.178233s.
220325-20:33:55,325 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.b0_ref_to_lps" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/b0_ref_to_lps".
220325-20:33:55,328 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.b0_ref_mask_to_lps" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/b0_ref_mask_to_lps".
220325-20:33:55,330 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.b0_ref_brain_to_lps" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/b0_ref_brain_to_lps".
220325-20:33:55,342 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.eddy" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/eddy".
220325-20:33:55,348 nipype.workflow INFO:
[Node] Executing "b0_ref_to_lps"
220325-20:33:55,364 nipype.workflow INFO:
[Node] Executing "b0_ref_mask_to_lps"
220325-20:33:55,420 nipype.workflow INFO:
[Node] Executing "eddy"
220325-20:33:55,530 nipype.interface INFO:
Re-orienting /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0/topup_imain_avg_mask.nii.gz to LPS
220325-20:33:55,617 nipype.workflow INFO:
[Node] Finished "b0_ref_mask_to_lps", elapsed time 0.252399s.
220325-20:33:55,812 nipype.workflow INFO:
[Node] Executing "b0_ref_brain_to_lps"
220325-20:33:56,632 nipype.interface INFO:
Re-orienting /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0/topup_imain_avg_unbiasedsharpened.nii.gz to LPS
220325-20:33:57,379 nipype.interface INFO:
Re-orienting /home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/enhance_and_mask_b0/topup_imain_avg_brain.nii.gz to LPS
220325-20:33:57,769 nipype.workflow INFO:
[Node] Finished "b0_ref_to_lps", elapsed time 2.419812s.
220325-20:33:58,974 nipype.workflow INFO:
[Node] Finished "b0_ref_brain_to_lps", elapsed time 3.156988s.
220325-20:33:59,351 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.b0_anat_coreg.b0_to_anat" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/b0_anat_coreg/b0_to_anat".
220325-20:33:59,368 nipype.workflow INFO:
[Node] Executing "b0_to_anat"
220325-20:39:25,10 nipype.workflow INFO:
[Node] Finished "eddy", elapsed time 507.821561s.
220325-20:39:25,15 nipype.workflow WARNING:
Storing result file without outputs
220325-20:39:25,121 nipype.workflow WARNING:
[Node] Error on "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.eddy" (/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/eddy)
220325-20:39:25,155 nipype.workflow ERROR:
Node eddy failed to run on host cn-032.
220325-20:39:25,745 nipype.workflow ERROR:
Saving crash info to /home/elevchenko/Entropy/derivatives_qsiprep/controls/qsiprep/sub-OAS30001/log/20220325-192732_1ded0a64-ca72-4686-9939-84599280ae45/crash-20220325-203925-elevchenko-eddy-f5a8ce86-043e-4f53-bea2-8c38acb63b9d.txt
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node eddy.
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/miniconda/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'out_corrected' trait of an ExtendedEddyOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/eddy/eddy_corrected.nii.gz' was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/eddy/eddy_corrected.nii.gz' for output 'out_corrected' of a ExtendedEddy interface
220325-20:47:31,748 nipype.interface INFO:
Report - setting fixed (/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/skullstrip_wf/rigid_acpc_resample_brain/highres001_BrainExtractionBrain_trans.nii.gz) and moving (/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/b0_anat_coreg/b0_to_anat/transform_Warped.nii.gz) images
220325-20:48:26,478 nipype.workflow INFO:
[Node] Finished "b0_to_anat", elapsed time 1046.308807s.
220325-20:54:13,489 nipype.interface INFO:
Report - setting fixed (/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/skullstrip_wf/rigid_acpc_resample_brain/highres001_BrainExtractionBrain_trans.nii.gz) and moving (/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/b0_anat_coreg/b0_to_anat/transform_Warped.nii.gz) images
220325-20:55:01,58 nipype.workflow INFO:
[Node] Finished "b0_to_anat", elapsed time 1260.366887s.
220325-20:59:03,975 nipype.workflow INFO:
[Node] Finished "eddy", elapsed time 1508.470667s.
220325-20:59:03,979 nipype.workflow WARNING:
Storing result file without outputs
220325-20:59:03,982 nipype.workflow WARNING:
[Node] Error on "qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.eddy" (/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/eddy)
220325-20:59:05,196 nipype.workflow ERROR:
Node eddy failed to run on host cn-032.
220325-20:59:05,229 nipype.workflow ERROR:
Saving crash info to /home/elevchenko/Entropy/derivatives_qsiprep/controls/qsiprep/sub-OAS30001/log/20220325-192732_1ded0a64-ca72-4686-9939-84599280ae45/crash-20220325-205905-elevchenko-eddy-2aae42e9-e47b-4208-b08e-cf4080b5a864.txt
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node eddy.
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/miniconda/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'out_corrected' trait of an ExtendedEddyOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/eddy/eddy_corrected.nii.gz' was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d3132_wf/hmc_sdc_wf/eddy/eddy_corrected.nii.gz' for output 'out_corrected' of a ExtendedEddy interface
220325-21:42:22,324 nipype.workflow INFO:
[Node] Finished "t1_2_mni", elapsed time 4439.542549s.
220325-21:42:22,831 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.mni_mask" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/mni_mask".
220325-21:42:22,833 nipype.workflow INFO:
[Node] Setting-up "qsiprep_wf.single_subject_OAS30001_wf.anat_preproc_wf.mni_seg" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/mni_seg".
220325-21:42:22,912 nipype.workflow INFO:
[Node] Executing "mni_mask"
220325-21:42:22,938 nipype.workflow INFO:
[Node] Executing "mni_seg"
220325-21:42:24,825 nipype.workflow INFO:
[Node] Setting-up "_mni_tpms0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/mni_tpms/mapflow/_mni_tpms0".
220325-21:42:24,826 nipype.workflow INFO:
[Node] Setting-up "_mni_tpms1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/mni_tpms/mapflow/_mni_tpms1".
220325-21:42:24,827 nipype.workflow INFO:
[Node] Setting-up "_mni_tpms2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/mni_tpms/mapflow/_mni_tpms2".
220325-21:42:24,846 nipype.workflow INFO:
[Node] Executing "_mni_tpms2"
220325-21:42:24,887 nipype.workflow INFO:
[Node] Executing "_mni_tpms1"
220325-21:42:24,900 nipype.workflow INFO:
[Node] Executing "_mni_tpms0"
220325-21:42:29,377 nipype.workflow INFO:
[Node] Finished "_mni_tpms0", elapsed time 4.098877s.
220325-21:42:30,171 nipype.workflow INFO:
[Node] Finished "_mni_tpms2", elapsed time 4.977554s.
220325-21:42:30,664 nipype.workflow INFO:
[Node] Finished "_mni_tpms1", elapsed time 5.474574s.
220325-21:42:32,881 nipype.workflow INFO:
[Node] Setting-up "_mni_tpms0" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/mni_tpms/mapflow/_mni_tpms0".
220325-21:42:32,884 nipype.workflow INFO:
[Node] Cached "_mni_tpms0" - collecting precomputed outputs
220325-21:42:32,884 nipype.workflow INFO:
[Node] "_mni_tpms0" found cached.
220325-21:42:32,885 nipype.workflow INFO:
[Node] Setting-up "_mni_tpms1" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/mni_tpms/mapflow/_mni_tpms1".
220325-21:42:32,888 nipype.workflow INFO:
[Node] Cached "_mni_tpms1" - collecting precomputed outputs
220325-21:42:32,888 nipype.workflow INFO:
[Node] "_mni_tpms1" found cached.
220325-21:42:32,889 nipype.workflow INFO:
[Node] Setting-up "_mni_tpms2" in "/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/anat_preproc_wf/mni_tpms/mapflow/_mni_tpms2".
220325-21:42:32,892 nipype.workflow INFO:
[Node] Cached "_mni_tpms2" - collecting precomputed outputs
220325-21:42:32,892 nipype.workflow INFO:
[Node] "_mni_tpms2" found cached.
220325-21:43:31,996 nipype.workflow INFO:
[Node] Finished "mni_mask", elapsed time 68.261067s.
220325-21:43:37,354 nipype.workflow INFO:
[Node] Finished "mni_seg", elapsed time 73.620261s.
220325-21:43:40,772 nipype.workflow ERROR:
could not run node: qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d0757_wf.hmc_sdc_wf.eddy
220325-21:43:40,774 nipype.workflow ERROR:
could not run node: qsiprep_wf.single_subject_OAS30001_wf.dwi_preproc_ses_d3132_wf.hmc_sdc_wf.eddy
QSIPrep failed: 2 raised. Re-raising first.
RuntimeError: Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
result["result"] = node.run(updatehash=updatehash)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 521, in run
result = self._run_interface(execute=True)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_interface
return self._run_command(execute)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 750, in _run_command
raise NodeExecutionError(
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node eddy.
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs
setattr(outputs, key, val)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
value = super(File, self).validate(objekt, name, value, return_pathlike=True)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/usr/local/miniconda/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'out_corrected' trait of an ExtendedEddyOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/eddy/eddy_corrected.nii.gz' was specified.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run
outputs = self.aggregate_outputs(runtime)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs
raise FileNotFoundError(msg)
FileNotFoundError: No such file or directory '/home/elevchenko/Entropy/work_qsiprep/controls/qsiprep_wf/single_subject_OAS30001_wf/dwi_preproc_ses_d0757_wf/hmc_sdc_wf/eddy/eddy_corrected.nii.gz' for output 'out_corrected' of a ExtendedEddy interface
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/usr/local/miniconda/bin/qsiprep", line 8, in
sys.exit(main())
File "/usr/local/miniconda/lib/python3.8/site-packages/qsiprep/cli/run.py", line 653, in main
qsiprep_wf.run(**plugin_settings)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/workflows.py", line 638, in run
runner.run(execgraph, updatehash=updatehash, config=self.config)
File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/base.py", line 212, in run
raise error from cause
RuntimeError: 2 raised. Re-raising first.
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