Making sure the input data is BIDS compliant (warnings can be ignored in most cases). This dataset appears to be BIDS compatible. Summary: Available Tasks: Available Modalities: 12 Files, 221.12MB cvr T1w 1 - Subject events 1 - Session bold fieldmap  If you have any questions, please post on https://neurostars.org/tags/bids. 191029-21:16:58,80 nipype.workflow IMPORTANT: Running fMRIPREP version 1.5.0: * BIDS dataset path: /data. * Participant list: ['test01']. * Run identifier: 20191029-211646_1298b432-661e-4de7-a55a-20c4c6e411f7. 191029-21:17:03,22 nipype.workflow IMPORTANT: Creating bold processing workflow for "/data/sub-test01/ses-01/func/sub-test01_ses-01_task-cvr_rec-moco_bold.nii.gz" (0.20 GB / 400 TRs). Memory resampled/largemem=0.82/1.63 GB. 191029-21:17:03,105 nipype.workflow IMPORTANT: No single-band-reference found for sub-test01_ses-01_task-cvr_rec-moco_bold.nii.gz 191029-21:17:05,306 nipype.workflow IMPORTANT: Slice-timing correction will be included. 191029-21:17:06,39 nipype.workflow IMPORTANT: SDC: fieldmap estimation of type "epi" intended for /data/sub-test01/ses-01/func/sub-test01_ses-01_task-cvr_rec-moco_bold.nii.gz found. 191029-21:17:07,466 nipype.workflow IMPORTANT: Creating BOLD surface-sampling workflow. 191029-21:17:17,394 nipype.workflow IMPORTANT: Works derived from this fMRIPrep execution should include the following boilerplate: Results included in this manuscript come from preprocessing performed using *fMRIPrep* 1.5.0 (@fmriprep1; @fmriprep2; RRID:SCR_016216), which is based on *Nipype* 1.2.2 (@nipype1; @nipype2; RRID:SCR_002502). Anatomical data preprocessing : The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU) with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.2.0 [@ants, RRID:SCR_004757], and used as T1w-reference throughout the workflow. The T1w-reference was then skull-stripped with a *Nipype* implementation of the `antsBrainExtraction.sh` workflow (from ANTs), using OASIS30ANTs as target template. Brain tissue segmentation of cerebrospinal fluid (CSF), white-matter (WM) and gray-matter (GM) was performed on the brain-extracted T1w using `fast` [FSL 5.0.9, RRID:SCR_002823, @fsl_fast]. Brain surfaces were reconstructed using `recon-all` [FreeSurfer 6.0.1, RRID:SCR_001847, @fs_reconall], and the brain mask estimated previously was refined with a custom variation of the method to reconcile ANTs-derived and FreeSurfer-derived segmentations of the cortical gray-matter of Mindboggle [RRID:SCR_002438, @mindboggle]. Volume-based spatial normalization to several standard spaces () was performed through nonlinear registration with `antsRegistration` (ANTs 2.2.0), using brain-extracted versions of both T1w reference and the T1w template. The following templates were selected for spatial normalization: Functional data preprocessing : For each of the 1 BOLD runs found per subject (across all tasks and sessions), the following preprocessing was performed. First, a reference volume and its skull-stripped version were generated using a custom methodology of *fMRIPrep*. A deformation field to correct for susceptibility distortions was estimated based on two echo-planar imaging (EPI) references with opposing phase-encoding directions, using `3dQwarp` @afni (AFNI 20160207). Based on the estimated susceptibility distortion, an unwarped BOLD reference was calculated for a more accurate co-registration with the anatomical reference. The BOLD reference was then co-registered to the T1w reference using `bbregister` (FreeSurfer) which implements boundary-based registration [@bbr]. Co-registration was configured with six degrees of freedom. Head-motion parameters with respect to the BOLD reference (transformation matrices, and six corresponding rotation and translation parameters) are estimated before any spatiotemporal filtering using `mcflirt` [FSL 5.0.9, @mcflirt]. BOLD runs were slice-time corrected using `3dTshift` from AFNI 20160207 [@afni, RRID:SCR_005927]. The BOLD time-series, were resampled to surfaces on the following spaces: *fsnative*. The BOLD time-series (including slice-timing correction when applied) were resampled onto their original, native space by applying a single, composite transform to correct for head-motion and susceptibility distortions. These resampled BOLD time-series will be referred to as *preprocessed BOLD in original space*, or just *preprocessed BOLD*. Several confounding time-series were calculated based on the *preprocessed BOLD*: framewise displacement (FD), DVARS and three region-wise global signals. FD and DVARS are calculated for each functional run, both using their implementations in *Nipype* [following the definitions by @power_fd_dvars]. The three global signals are extracted within the CSF, the WM, and the whole-brain masks. Additionally, a set of physiological regressors were extracted to allow for component-based noise correction [*CompCor*, @compcor]. Principal components are estimated after high-pass filtering the *preprocessed BOLD* time-series (using a discrete cosine filter with 128s cut-off) for the two *CompCor* variants: temporal (tCompCor) and anatomical (aCompCor). tCompCor components are then calculated from the top 5% variable voxels within a mask covering the subcortical regions. This subcortical mask is obtained by heavily eroding the brain mask, which ensures it does not include cortical GM regions. For aCompCor, components are calculated within the intersection of the aforementioned mask and the union of CSF and WM masks calculated in T1w space, after their projection to the native space of each functional run (using the inverse BOLD-to-T1w transformation). Components are also calculated separately within the WM and CSF masks. For each CompCor decomposition, the *k* components with the largest singular values are retained, such that the retained components' time series are sufficient to explain 50 percent of variance across the nuisance mask (CSF, WM, combined, or temporal). The remaining components are dropped from consideration. The head-motion estimates calculated in the correction step were also placed within the corresponding confounds file. The confound time series derived from head motion estimates and global signals were expanded with the inclusion of temporal derivatives and quadratic terms for each [@confounds_satterthwaite_2013]. Frames that exceeded a threshold of 0.5 mm FD or 1.5 standardised DVARS were annotated as motion outliers. All resamplings can be performed with *a single interpolation step* by composing all the pertinent transformations (i.e. head-motion transform matrices, susceptibility distortion correction when available, and co-registrations to anatomical and output spaces). Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs), configured with Lanczos interpolation to minimize the smoothing effects of other kernels [@lanczos]. Non-gridded (surface) resamplings were performed using `mri_vol2surf` (FreeSurfer). Many internal operations of *fMRIPrep* use *Nilearn* 0.5.2 [@nilearn, RRID:SCR_001362], mostly within the functional processing workflow. For more details of the pipeline, see [the section corresponding to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation"). ### Copyright Waiver The above boilerplate text was automatically generated by fMRIPrep with the express intention that users should copy and paste this text into their manuscripts *unchanged*. It is released under the [CC0](https://creativecommons.org/publicdomain/zero/1.0/) license. ### References 191029-21:17:33,10 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_norm_wf.outputnode" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/anat_norm_wf/outputnode". 191029-21:17:33,14 nipype.workflow INFO: [Node] Running "outputnode" ("nipype.interfaces.utility.base.IdentityInterface") 191029-21:17:33,22 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_norm_wf.outputnode". 191029-21:17:33,28 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.func_derivatives_wf.raw_sources" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/func_derivatives_wf/raw_sources". 191029-21:17:33,32 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 191029-21:17:33,39 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.func_derivatives_wf.raw_sources". 191029-21:17:33,168 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split". 191029-21:17:33,173 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0". 191029-21:17:33,176 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /data/sub-test01/ses-01/fmap/sub-test01_ses-01_dir-PA_epi.nii.gz -t 191029-21:17:33,177 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split". 191029-21:17:33,181 nipype.workflow INFO: [Node] Setting-up "_split0" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0". 191029-21:17:33,184 nipype.workflow INFO: [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /data/sub-test01/ses-01/fmap/sub-test01_ses-01_dir-AP_epi.nii.gz -t 191029-21:17:33,422 nipype.workflow INFO: [Node] Finished "_split0". 191029-21:17:33,426 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split". 191029-21:17:33,459 nipype.workflow INFO: [Node] Finished "_split0". 191029-21:17:33,463 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split". 191029-21:17:36,848 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl". 191029-21:17:36,854 nipype.workflow INFO: [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1 191029-21:17:36,898 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.validate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/validate". 191029-21:17:36,901 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 191029-21:17:36,964 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.validate". 191029-21:17:37,69 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl". 191029-21:17:37,72 nipype.workflow INFO: [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1 191029-21:17:37,149 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.bidssrc" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/bidssrc". 191029-21:17:37,152 nipype.workflow INFO: [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber") 191029-21:17:37,153 nipype.interface WARNING: No "t2w" images found for sub- 191029-21:17:37,153 nipype.interface WARNING: No "flair" images found for sub- 191029-21:17:37,153 nipype.interface WARNING: No "sbref" images found for sub- 191029-21:17:37,153 nipype.interface WARNING: No "roi" images found for sub- 191029-21:17:37,159 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.bidssrc". 191029-21:17:38,948 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl". 191029-21:17:41,65 nipype.workflow WARNING: Storing result file without outputs 191029-21:17:41,66 nipype.workflow WARNING: [Node] Error on "fmriprep_wf.fsdir_run_20191029_211646_1298b432_661e_4de7_a55a_20c4c6e411f7" (/tmp/work/fmriprep_wf/fsdir_run_20191029_211646_1298b432_661e_4de7_a55a_20c4c6e411f7) 191029-21:17:41,69 nipype.workflow ERROR: Node fsdir_run_20191029_211646_1298b432_661e_4de7_a55a_20c4c6e411f7 failed to run on host e7fecee26135. 191029-21:17:41,81 nipype.workflow ERROR: Saving crash info to /out/fmriprep/logs/crash-20191029-211741-root-fsdir_run_20191029_211646_1298b432_661e_4de7_a55a_20c4c6e411f7-807d9017-c0d1-486c-bf26-1f0d243b2103.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 316, in _send_procs_to_workers self.procs[jobid].run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 473, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 564, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 649, in _run_command result = self._interface.run(cwd=outdir) File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 376, in run runtime = self._run_interface(runtime) File "/usr/local/miniconda/lib/python3.7/site-packages/niworkflows/interfaces/bids.py", line 652, in _run_interface copytree(source, dest) File "/usr/local/miniconda/lib/python3.7/shutil.py", line 359, in copytree raise Error(errors) shutil.Error: [('/opt/freesurfer/subjects/fsaverage/mri.2mm', '/out/freesurfer/fsaverage/mri.2mm', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/mri.2mm'"), ('/opt/freesurfer/subjects/fsaverage/mri/transforms/bak', '/out/freesurfer/fsaverage/mri/transforms/bak', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/mri/transforms/bak'"), ('/opt/freesurfer/subjects/fsaverage/mri/transforms', '/out/freesurfer/fsaverage/mri/transforms', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/mri/transforms'"), ('/opt/freesurfer/subjects/fsaverage/mri/orig', '/out/freesurfer/fsaverage/mri/orig', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/mri/orig'"), ('/opt/freesurfer/subjects/fsaverage/mri', '/out/freesurfer/fsaverage/mri', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/mri'"), ('/opt/freesurfer/subjects/fsaverage/surf', '/out/freesurfer/fsaverage/surf', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/surf'"), ('/opt/freesurfer/subjects/fsaverage/label', '/out/freesurfer/fsaverage/label', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/label'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/stats', '/out/freesurfer/fsaverage/xhemi/stats', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/stats'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/trash', '/out/freesurfer/fsaverage/xhemi/trash', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/trash'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/bem', '/out/freesurfer/fsaverage/xhemi/bem', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/bem'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/mri/transforms/bak', '/out/freesurfer/fsaverage/xhemi/mri/transforms/bak', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/mri/transforms/bak'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/mri/transforms', '/out/freesurfer/fsaverage/xhemi/mri/transforms', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/mri/transforms'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/mri/orig', '/out/freesurfer/fsaverage/xhemi/mri/orig', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/mri/orig'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/mri', '/out/freesurfer/fsaverage/xhemi/mri', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/mri'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/tmp', '/out/freesurfer/fsaverage/xhemi/tmp', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/tmp'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/surf', '/out/freesurfer/fsaverage/xhemi/surf', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/surf'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/label', '/out/freesurfer/fsaverage/xhemi/label', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/label'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/src', '/out/freesurfer/fsaverage/xhemi/src', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/src'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/scripts', '/out/freesurfer/fsaverage/xhemi/scripts', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/scripts'"), ('/opt/freesurfer/subjects/fsaverage/xhemi/touch', '/out/freesurfer/fsaverage/xhemi/touch', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi/touch'"), ('/opt/freesurfer/subjects/fsaverage/xhemi', '/out/freesurfer/fsaverage/xhemi', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/xhemi'"), ('/opt/freesurfer/subjects/fsaverage/scripts', '/out/freesurfer/fsaverage/scripts', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage/scripts'"), ('/opt/freesurfer/subjects/fsaverage', '/out/freesurfer/fsaverage', "[Errno 1] Operation not permitted: '/out/freesurfer/fsaverage'")] 191029-21:17:45,360 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/gen_ref". 191029-21:17:45,363 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 191029-21:17:45,366 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.bids_info" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/bids_info". 191029-21:17:45,368 nipype.workflow INFO: [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo") 191029-21:17:45,695 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge". 191029-21:17:45,716 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 191029-21:17:45,775 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge". 191029-21:17:45,796 nipype.workflow INFO: [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command: echo Only one time point! 191029-21:17:45,862 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge". 191029-21:17:45,887 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions". 191029-21:17:45,890 nipype.workflow INFO: [Node] Running "t1_template_dimensions" ("niworkflows.interfaces.images.TemplateDimensions") 191029-21:17:45,932 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge". 191029-21:17:46,41 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions". 191029-21:17:46,290 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.gen_ref". 191029-21:17:46,699 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl". 191029-21:17:47,340 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_hmc_wf.mcflirt" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_hmc_wf/mcflirt". 191029-21:17:47,343 nipype.workflow INFO: [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command: mcflirt -in /data/sub-test01/ses-01/func/sub-test01_ses-01_task-cvr_rec-moco_bold.nii.gz -out /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_hmc_wf/mcflirt/sub-test01_ses-01_task-cvr_rec-moco_bold_mcf.nii.gz -reffile /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots 191029-21:17:47,458 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl". 191029-21:17:47,461 nipype.workflow INFO: [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge") 191029-21:17:47,467 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl". 191029-21:17:47,746 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources". 191029-21:17:47,748 nipype.workflow INFO: [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function") 191029-21:17:47,752 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources". 191029-21:17:49,341 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_stc_wf.slice_timing_correction" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_stc_wf/slice_timing_correction". 191029-21:17:49,344 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/anat_derivatives_wf/t1_name". 191029-21:17:49,346 nipype.workflow INFO: [Node] Running "t1_name" ("nipype.interfaces.utility.wrappers.Function") 191029-21:17:49,346 nipype.workflow INFO: [Node] Running "slice_timing_correction" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command: 3dTshift -ignore 2 -prefix sub-test01_ses-01_task-cvr_rec-moco_bold_tshift.nii.gz -tpattern @slice_timing.1D -TR 0.86s /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_stc_wf/slice_timing_correction/sub-test01_ses-01_task-cvr_rec-moco_bold.nii.gz 191029-21:17:49,351 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_derivatives_wf.t1_name". 191029-21:17:50,627 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff". 191029-21:17:50,630 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 191029-21:17:51,382 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_template_wf.t1_conform" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/anat_template_wf/t1_conform". 191029-21:17:51,386 nipype.workflow INFO: [Node] Setting-up "_t1_conform0" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0". 191029-21:17:51,391 nipype.workflow INFO: [Node] Running "_t1_conform0" ("niworkflows.interfaces.images.Conform") 191029-21:17:51,420 nipype.workflow INFO: [Node] Finished "_t1_conform0". 191029-21:17:51,422 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_template_wf.t1_conform". 191029-21:17:53,363 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_template_wf.get1st" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/anat_template_wf/get1st". 191029-21:17:53,365 nipype.workflow INFO: [Node] Running "get1st" ("nipype.interfaces.utility.base.Select") 191029-21:17:53,371 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.anat_template_wf.get1st". 191029-21:17:55,852 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.bids_info". 191029-21:17:56,764 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff". 191029-21:17:57,360 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm". 191029-21:17:57,362 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/surface_recon_wf/fov_check". 191029-21:17:57,364 nipype.workflow INFO: [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function") 191029-21:17:57,367 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 191029-21:17:57,507 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/surface_recon_wf/recon_config". 191029-21:17:57,510 nipype.workflow INFO: [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs") 191029-21:17:57,540 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.surface_recon_wf.recon_config". 191029-21:17:57,719 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.surface_recon_wf.fov_check". 191029-21:17:59,601 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm". 191029-21:18:01,363 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 191029-21:18:01,366 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff". 191029-21:18:01,368 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 191029-21:18:01,369 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 191029-21:18:03,228 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/truncate_images". 191029-21:18:03,233 nipype.workflow INFO: [Node] Setting-up "_truncate_images0" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0". 191029-21:18:03,236 nipype.workflow INFO: [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-test01_ses-01_T1w_maths.nii.gz TruncateImageIntensity /data/sub-test01/ses-01/anat/sub-test01_ses-01_T1w.nii.gz 0.01 0.999 256 191029-21:18:08,424 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff". 191029-21:18:09,363 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm". 191029-21:18:09,369 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 191029-21:18:09,817 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 191029-21:18:11,378 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 191029-21:18:11,382 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 191029-21:18:12,278 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 191029-21:18:13,609 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm". 191029-21:18:13,816 nipype.workflow INFO: [Node] Finished "_truncate_images0". 191029-21:18:13,819 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.truncate_images". 191029-21:18:15,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct". 191029-21:18:15,366 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 191029-21:18:15,370 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 191029-21:18:15,371 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 191029-21:18:15,374 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 191029-21:18:15,412 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz -r 191029-21:18:22,457 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 191029-21:18:23,378 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 191029-21:18:23,384 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 191029-21:18:23,601 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 191029-21:18:23,702 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct". 191029-21:18:25,177 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 191029-21:18:25,372 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 191029-21:18:25,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 191029-21:18:25,376 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 191029-21:18:25,381 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 191029-21:18:25,382 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 191029-21:18:25,386 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 191029-21:18:26,85 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 191029-21:18:27,386 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 191029-21:18:27,546 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4". 191029-21:18:27,552 nipype.workflow INFO: [Node] Setting-up "_inu_n40" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40". 191029-21:18:27,556 nipype.workflow INFO: [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/sub-test01_ses-01_T1w_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-test01_ses-01_T1w_maths_corrected.nii.gz --shrink-factor 4 191029-21:18:29,454 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 191029-21:18:29,457 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 191029-21:18:32,600 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 191029-21:18:32,742 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 191029-21:18:33,390 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 191029-21:18:33,393 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 191029-21:18:33,394 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct". 191029-21:18:33,437 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output vol0000_corrected.nii.gz -r 191029-21:18:33,566 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 191029-21:18:35,411 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize". 191029-21:18:35,414 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 191029-21:18:39,435 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize". 191029-21:18:40,644 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct". 191029-21:18:41,385 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 191029-21:18:41,388 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:18:41,390 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 191029-21:18:41,395 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/vol0000_corrected.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -f 0.20 -m 191029-21:18:41,567 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 191029-21:18:43,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 191029-21:18:43,399 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 191029-21:18:43,544 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 191029-21:18:43,775 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 191029-21:18:45,391 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 191029-21:18:45,394 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:18:45,409 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 191029-21:18:45,413 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz 191029-21:18:45,447 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 191029-21:18:47,389 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks". 191029-21:18:47,393 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 191029-21:18:47,546 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks". 191029-21:18:48,522 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 191029-21:18:49,408 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask". 191029-21:18:49,411 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 191029-21:18:49,412 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 191029-21:18:49,414 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/vol0000_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/vol0000_corrected_brain_masked.nii.gz 191029-21:18:49,581 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 191029-21:18:49,591 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask". 191029-21:18:51,418 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize". 191029-21:18:51,421 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 191029-21:18:51,422 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/vol0000_corrected_brain_masked.nii.gz 191029-21:18:51,425 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 191029-21:18:52,209 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 191029-21:18:55,439 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize". 191029-21:18:55,444 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 191029-21:18:55,484 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 191029-21:18:57,418 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 191029-21:18:57,420 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:18:57,552 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 191029-21:18:59,406 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 191029-21:18:59,411 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 191029-21:18:59,648 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_stc_wf.slice_timing_correction". 191029-21:18:59,768 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 191029-21:19:01,401 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 191029-21:19:01,403 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:19:01,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_stc_wf.copy_xform" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_stc_wf/copy_xform". 191029-21:19:01,407 nipype.workflow INFO: [Node] Running "copy_xform" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:19:01,458 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 191029-21:19:02,510 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 191029-21:19:03,421 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks". 191029-21:19:03,424 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 191029-21:19:03,424 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/vol0000_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz 191029-21:19:03,428 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 191029-21:19:03,562 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks". 191029-21:19:05,439 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask". 191029-21:19:05,443 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/vol0000_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 191029-21:19:05,598 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 191029-21:19:05,638 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask". 191029-21:19:07,436 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 191029-21:19:07,439 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 191029-21:19:10,701 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 191029-21:19:11,407 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 191029-21:19:11,411 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 191029-21:19:11,606 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 191029-21:19:13,438 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 191029-21:19:13,442 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 191029-21:19:17,256 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_stc_wf.copy_xform". 191029-21:19:17,325 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 191029-21:19:17,427 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_split" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_split". 191029-21:19:17,430 nipype.workflow INFO: [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command: fslsplit /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_stc_wf/copy_xform/sub-test01_ses-01_task-cvr_rec-moco_bold_tshift_xform.nii.gz -t 191029-21:19:19,419 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 191029-21:19:19,422 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:19:19,515 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 191029-21:19:21,469 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 191029-21:19:21,472 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 191029-21:19:21,850 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 191029-21:19:23,441 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 191029-21:19:23,444 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:19:23,492 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 191029-21:19:25,444 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 191029-21:19:25,447 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 191029-21:19:25,577 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 191029-21:19:27,421 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 191029-21:19:27,425 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 191029-21:19:27,614 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 191029-21:19:44,914 nipype.workflow INFO: [Node] Finished "_inu_n40". 191029-21:19:44,916 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.inu_n4". 191029-21:19:45,441 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg". 191029-21:19:45,443 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/lap_target". 191029-21:19:45,445 nipype.workflow INFO: [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-test01_ses-01_T1w_maths_corrected_maths.nii.gz Laplacian /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-test01_ses-01_T1w_maths_corrected.nii.gz 1.5 1 191029-21:19:45,448 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 191029-21:19:45,456 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/res_target". 191029-21:19:45,459 nipype.workflow INFO: [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command: ResampleImageBySpacing 3 /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-test01_ses-01_T1w_maths_corrected.nii.gz sub-test01_ses-01_T1w_maths_corrected_resampled.nii.gz 4 4 4 1 191029-21:19:47,307 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.res_target". 191029-21:19:55,979 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.lap_target". 191029-21:19:57,488 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/mrg_target". 191029-21:19:57,493 nipype.workflow INFO: [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge") 191029-21:19:57,507 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.mrg_target". 191029-21:20:08,335 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_split". 191029-21:20:32,727 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg". 191029-21:20:33,477 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg". 191029-21:20:33,483 nipype.workflow INFO: [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ] --write-composite-transform 1 191029-21:21:09,51 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_hmc_wf.mcflirt". 191029-21:21:09,620 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_hmc_wf.normalize_motion" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_hmc_wf/normalize_motion". 191029-21:21:09,622 nipype.workflow INFO: [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams") 191029-21:21:09,650 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_hmc_wf.normalize_motion". 191029-21:21:11,704 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_confounds_wf.fdisp" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_confounds_wf/fdisp". 191029-21:21:11,707 nipype.workflow INFO: [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement") 191029-21:21:11,724 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_confounds_wf.fdisp". 191029-21:21:45,154 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg". 191029-21:21:45,755 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_hmc_wf.fsl2itk" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_hmc_wf/fsl2itk". 191029-21:21:45,822 nipype.workflow INFO: [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK") 191029-21:22:20,995 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_hmc_wf.fsl2itk". 191029-21:22:21,582 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/qwarp". 191029-21:22:21,591 nipype.workflow INFO: [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command: 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis -noZdis -base /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05 191029-21:26:36,418 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.qwarp". 191029-21:26:37,811 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp". 191029-21:26:37,813 nipype.workflow INFO: [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader") 191029-21:26:37,815 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/init_aff". 191029-21:26:37,819 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz,/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/res_target/sub-test01_ses-01_T1w_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1 191029-21:26:38,28 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp". 191029-21:26:39,836 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/to_ants". 191029-21:26:39,839 nipype.workflow INFO: [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function") 191029-21:26:40,54 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.to_ants". 191029-21:26:41,192 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.init_aff". 191029-21:26:41,940 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference". 191029-21:26:41,943 nipype.workflow INFO: [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz 191029-21:26:41,952 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/norm". 191029-21:26:41,963 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-test01_ses-01_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform Affine[ 0.1 ] --metric MI[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-test01_ses-01_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-test01_ses-01_T1w_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/lap_target/sub-test01_ses-01_T1w_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0 191029-21:26:46,152 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference". 191029-21:48:07,568 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.norm". 191029-21:48:08,985 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff". 191029-21:48:08,989 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 191029-21:48:13,34 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask". 191029-21:48:13,38 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz --interpolation Gaussian --output tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz --reference-image /data/sub-test01/ses-01/anat/sub-test01_ses-01_T1w.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/norm/anat_to_template1InverseWarp.nii.gz, 0 ] 191029-21:48:14,665 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff". 191029-21:48:14,990 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm". 191029-21:48:14,996 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 191029-21:48:17,885 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm". 191029-21:48:18,991 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 191029-21:48:18,994 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 191029-21:48:19,229 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_transform" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_transform". 191029-21:48:19,289 nipype.workflow INFO: [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms") 191029-21:48:27,287 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 191029-21:48:29,17 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 191029-21:48:29,22 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 191029-21:48:30,18 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 191029-21:48:33,26 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct". 191029-21:48:33,234 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_scaled.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz -r 191029-21:48:41,182 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct". 191029-21:48:43,40 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 191029-21:48:43,44 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m 191029-21:48:45,661 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 191029-21:48:47,41 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 191029-21:48:47,44 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz 191029-21:48:51,111 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 191029-21:48:53,44 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 191029-21:48:53,47 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 191029-21:48:53,245 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 191029-21:48:55,46 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize". 191029-21:48:55,51 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz 191029-21:48:59,746 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize". 191029-21:49:01,93 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 191029-21:49:01,97 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:49:01,220 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 191029-21:49:03,66 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 191029-21:49:03,73 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 191029-21:49:03,574 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 191029-21:49:05,54 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 191029-21:49:05,57 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:49:05,113 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 191029-21:49:07,57 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks". 191029-21:49:07,61 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz 191029-21:49:07,224 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks". 191029-21:49:09,59 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask". 191029-21:49:09,64 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 191029-21:49:09,258 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask". 191029-21:49:16,915 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask". 191029-21:49:19,72 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask". 191029-21:49:19,76 nipype.workflow INFO: [Node] Running "thr_brainmask" ("niworkflows.interfaces.ants.ThresholdImage"), a CommandLine Interface with command: ThresholdImage 3 /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/map_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans.nii.gz tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000 191029-21:49:20,236 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask". 191029-21:49:21,96 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask". 191029-21:49:21,99 nipype.workflow INFO: [Node] Running "dil_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz MD /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 2 191029-21:49:21,104 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask". 191029-21:49:21,107 nipype.workflow INFO: [Node] Running "03_pad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/thr_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled.nii.gz 10 191029-21:49:22,767 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask". 191029-21:49:23,427 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.dil_brainmask". 191029-21:49:25,72 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask". 191029-21:49:25,76 nipype.workflow INFO: [Node] Running "get_brainmask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz GetLargestComponent /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/dil_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 191029-21:49:27,253 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.get_brainmask". 191029-21:52:47,96 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_transform". 191029-21:52:47,381 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos". 191029-21:52:47,387 nipype.workflow INFO: [Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command: Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/sub-test01_ses-01_T1w_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/get_brainmask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-test01_ses-01_T1w_maths_corrected_labeled.nii.gz] --use-random-seed 1 191029-21:52:47,522 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.merge" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/merge". 191029-21:52:47,580 nipype.workflow INFO: [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge") 191029-21:53:48,363 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.merge". 191029-21:53:49,292 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/validate". 191029-21:53:49,295 nipype.workflow INFO: [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage") 191029-21:53:49,321 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.validate". 191029-21:53:51,286 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref". 191029-21:53:51,289 nipype.workflow INFO: [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage") 191029-21:53:52,576 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref". 191029-21:54:15,235 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos". 191029-21:54:17,313 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff". 191029-21:54:17,316 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/02_pad_segm". 191029-21:54:17,318 nipype.workflow INFO: [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command: antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1 191029-21:54:17,320 nipype.workflow INFO: [Node] Running "02_pad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-test01_ses-01_T1w_maths_corrected_labeled_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/01_atropos/sub-test01_ses-01_T1w_maths_corrected_labeled.nii.gz 10 191029-21:54:19,74 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm". 191029-21:54:19,328 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels". 191029-21:54:19,331 nipype.workflow INFO: [Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function") 191029-21:54:19,865 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels". 191029-21:54:21,369 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/27_depad_csf". 191029-21:54:21,373 nipype.workflow INFO: [Node] Running "27_depad_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-01.nii.gz -10 191029-21:54:21,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf". 191029-21:54:21,379 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm". 191029-21:54:21,380 nipype.workflow INFO: [Node] Running "10_me_csf" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-01.nii.gz 10 191029-21:54:21,384 nipype.workflow INFO: [Node] Running "06_get_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-02.nii.gz 191029-21:54:21,386 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm". 191029-21:54:21,390 nipype.workflow INFO: [Node] Running "05_get_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/04_sel_labels/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-03.nii.gz 191029-21:54:22,749 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf". 191029-21:54:23,624 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff". 191029-21:54:24,120 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm". 191029-21:54:24,283 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm". 191029-21:54:25,321 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm". 191029-21:54:25,325 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm". 191029-21:54:25,328 nipype.workflow INFO: [Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/05_get_wm/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz 191029-21:54:25,330 nipype.workflow INFO: [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command: antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ] --write-composite-transform 0 191029-21:54:25,334 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm". 191029-21:54:25,338 nipype.workflow INFO: [Node] Running "07_fill_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz 2 191029-21:54:26,956 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm". 191029-21:54:27,347 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/26_depad_wm". 191029-21:54:27,350 nipype.workflow INFO: [Node] Running "26_depad_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10 191029-21:54:28,649 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm". 191029-21:54:28,917 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm". 191029-21:54:29,321 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask". 191029-21:54:29,325 nipype.workflow INFO: [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command: antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ] 191029-21:54:30,72 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf". 191029-21:54:36,21 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask". 191029-21:54:37,328 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate". 191029-21:54:37,332 nipype.workflow INFO: [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz 191029-21:54:37,742 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm". 191029-21:54:38,35 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate". 191029-21:54:39,518 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm". 191029-21:54:39,521 nipype.workflow INFO: [Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/06_get_gm/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-02_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/07_fill_gm/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz 191029-21:54:41,286 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm". 191029-21:54:41,349 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct". 191029-21:54:41,474 nipype.workflow INFO: [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r 191029-21:54:43,331 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm". 191029-21:54:43,334 nipype.workflow INFO: [Node] Running "11_add_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 08_mult_gm_maths.nii.gz addtozero /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/10_me_csf/sub-test01_ses-01_T1w_maths_corrected_labeled_maths_class-01_maths.nii.gz 191029-21:54:48,260 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm". 191029-21:54:48,484 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct". 191029-21:54:49,356 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass". 191029-21:54:49,358 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm". 191029-21:54:49,359 nipype.workflow INFO: [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command: bet /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m 191029-21:54:49,361 nipype.workflow INFO: [Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command: MultiplyImages 3 /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz 191029-21:54:50,867 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm". 191029-21:54:51,361 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/25_depad_gm". 191029-21:54:51,364 nipype.workflow INFO: [Node] Running "25_depad_gm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10 191029-21:54:51,376 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm". 191029-21:54:51,379 nipype.workflow INFO: [Node] Running "13_add_gm_wm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz 191029-21:54:51,484 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass". 191029-21:54:52,850 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm". 191029-21:54:53,340 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate". 191029-21:54:53,343 nipype.workflow INFO: [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command: fslmaths -dt char /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz 191029-21:54:53,344 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/merge_tpms". 191029-21:54:53,347 nipype.workflow INFO: [Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge") 191029-21:54:53,352 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms". 191029-21:54:56,232 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate". 191029-21:54:56,430 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm". 191029-21:54:57,363 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask". 191029-21:54:57,366 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/24_depad_segm". 191029-21:54:57,367 nipype.workflow INFO: [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz 191029-21:54:57,368 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2". 191029-21:54:57,369 nipype.workflow INFO: [Node] Running "24_depad_segm" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10 191029-21:54:57,371 nipype.workflow INFO: [Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function") 191029-21:54:57,535 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask". 191029-21:54:57,742 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2". 191029-21:54:58,842 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm". 191029-21:54:59,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize". 191029-21:54:59,358 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7". 191029-21:54:59,359 nipype.workflow INFO: [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command: 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz 191029-21:54:59,361 nipype.workflow INFO: [Node] Running "15_add_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz 191029-21:55:03,299 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize". 191029-21:55:03,925 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7". 191029-21:55:05,353 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize". 191029-21:55:05,355 nipype.workflow INFO: [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:55:05,356 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7". 191029-21:55:05,359 nipype.workflow INFO: [Node] Running "16_me_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2 191029-21:55:05,441 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize". 191029-21:55:07,357 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass". 191029-21:55:07,362 nipype.workflow INFO: [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command: 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz 191029-21:55:07,690 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass". 191029-21:55:09,354 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2". 191029-21:55:09,357 nipype.workflow INFO: [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm") 191029-21:55:09,401 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2". 191029-21:55:09,890 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7". 191029-21:55:11,362 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks". 191029-21:55:11,365 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7". 191029-21:55:11,366 nipype.workflow INFO: [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz 191029-21:55:11,368 nipype.workflow INFO: [Node] Running "17_comp_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz 191029-21:55:11,507 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks". 191029-21:55:13,365 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_confounds_wf.dvars" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_confounds_wf/dvars". 191029-21:55:13,368 nipype.workflow INFO: [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS") 191029-21:55:13,368 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask". 191029-21:55:13,371 nipype.workflow INFO: [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/func_preproc_ses_01_task_cvr_rec_moco_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz 191029-21:55:13,535 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask". 191029-21:55:13,864 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7". 191029-21:55:15,362 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7". 191029-21:55:15,365 nipype.workflow INFO: [Node] Running "18_md_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4 191029-21:55:18,255 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7". 191029-21:55:19,369 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7". 191029-21:55:19,373 nipype.workflow INFO: [Node] Running "19_fill_7" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2 /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. z[index] = x 191029-21:55:30,397 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7". 191029-21:55:31,382 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2". 191029-21:55:31,384 nipype.workflow INFO: [Node] Running "20_add_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/03_pad_mask/tpl-OASIS30ANTs_res-01_label-brain_probseg_trans_resampled_maths.nii.gz 191029-21:55:36,152 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2". 191029-21:55:37,379 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2". 191029-21:55:37,382 nipype.workflow INFO: [Node] Running "21_md_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5 191029-21:55:40,176 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2". 191029-21:55:41,384 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2". 191029-21:55:41,387 nipype.workflow INFO: [Node] Running "22_me_7_2" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5 191029-21:55:45,991 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2". 191029-21:55:47,389 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/23_depad_mask". 191029-21:55:47,392 nipype.workflow INFO: [Node] Running "23_depad_mask" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command: ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10 191029-21:55:48,670 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask". 191029-21:55:49,393 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/msk_conform". 191029-21:55:49,395 nipype.workflow INFO: [Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function") 191029-21:55:49,659 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform". 191029-21:55:55,404 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final". 191029-21:55:55,409 nipype.workflow INFO: [Node] Setting-up "_inu_n4_final0" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0". 191029-21:55:55,413 nipype.workflow INFO: [Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command: N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /data/sub-test01/ses-01/anat/sub-test01_ses-01_T1w.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-test01_ses-01_T1w_corrected.nii.gz, sub-test01_ses-01_T1w_bias.nii.gz ] -r --shrink-factor 4 --weight-image /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz 191029-21:56:11,27 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.func_preproc_ses_01_task_cvr_rec_moco_wf.bold_confounds_wf.dvars". 191029-21:56:42,259 nipype.workflow INFO: [Node] Finished "_inu_n4_final0". 191029-21:56:42,262 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final". 191029-21:56:43,457 nipype.workflow INFO: [Node] Setting-up "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.apply_mask" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/apply_mask". 191029-21:56:43,462 nipype.workflow INFO: [Node] Setting-up "_apply_mask0" in "/tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0". 191029-21:56:43,465 nipype.workflow INFO: [Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command: fslmaths /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0/sub-test01_ses-01_T1w_corrected.nii.gz -mas /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /tmp/work/fmriprep_wf/single_subject_test01_wf/anat_preproc_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0/sub-test01_ses-01_T1w_corrected_masked.nii.gz 191029-21:56:45,615 nipype.workflow INFO: [Node] Finished "_apply_mask0". 191029-21:56:45,617 nipype.workflow INFO: [Node] Finished "fmriprep_wf.single_subject_test01_wf.anat_preproc_wf.brain_extraction_wf.apply_mask". RUNNING: docker run --rm -it -e DOCKER_VERSION_8395080871=19.03.1 -v /neuro/arch/x86_64-Linux/packages/freesurfer/stable-6.0:/opt/freesurfer/license.txt:ro -v /net/rc-fs-nfs/ifs/data/NoSync/FNNDSC-NR/neuro/labs/grantlab/research/SCD:/data:ro -v /net/rc-fs-nfs/ifs/data/NoSync/FNNDSC-NR/neuro/labs/grantlab/research/SCD/derivatives:/out poldracklab/fmriprep:1.5.0 /data /out participant --participant-label test01 --output-spaces T1w fsnative