array id:  17 subject id:  sub-261382
250927-08:33:36,117 nipype.workflow IMPORTANT:
	 Running QSIRecon version 1.1.2.dev0+gfa8673957.d20250819

         License NOTICE ##################################################
         QSIRecon 1.1.2.dev0+gfa8673957.d20250819
         Copyright The PennLINC Developers.
         
         This product includes software developed by
         the NiPreps Community (https://nipreps.org/).
         
         Portions of this software were developed at the Department of
         Psychology at Stanford University, Stanford, CA, US.
         
         This software is also distributed as a Docker container image.
         The bootstrapping file for the image ("Dockerfile") is licensed
         under the MIT License.
         
         This software may be distributed through an add-on package called
         "Docker Wrapper" that is under the BSD 3-clause License.
         #################################################################
250927-08:33:36,159 nipype.workflow IMPORTANT:
	 Building QSIRecon's workflow:
           * BIDS dataset path: /data.
           * Participant list: ['261382'].
           * Run identifier: 20250927-083327_c2d4530e-0a6e-4f4a-8fa7-2323e55604b8.
           * Pre-run FreeSurfer's SUBJECTS_DIR: /output/derivatives/freesurfer.
250927-08:33:39,419 nipype.utils INFO:
	 Collected anatomical data:
acpc_aparc: null
acpc_aseg: /data/sub-261382/anat/sub-261382_space-ACPC_desc-aseg_dseg.nii.gz
acpc_brain_mask: /data/sub-261382/anat/sub-261382_space-ACPC_desc-brain_mask.nii.gz
acpc_csf_probseg: null
acpc_gm_probseg: null
acpc_preproc: /data/sub-261382/anat/sub-261382_space-ACPC_desc-preproc_T1w.nii.gz
acpc_seg: /data/sub-261382/anat/sub-261382_space-ACPC_dseg.nii.gz
acpc_to_template_xfm: /data/sub-261382/anat/sub-261382_from-ACPC_to-MNI152NLin2009cAsym_mode-image_xfm.h5
acpc_wm_probseg: null
orig_to_acpc_xfm: null
template_to_acpc_xfm: /data/sub-261382/anat/sub-261382_from-MNI152NLin2009cAsym_to-ACPC_mode-image_xfm.h5

250927-08:33:39,420 nipype.workflow INFO:
	 Anatomical data available for /data/sub-261382/anat/sub-261382_space-ACPC_desc-preproc_T1w.nii.gz:
acpc_aparc: null
acpc_aseg: /data/sub-261382/anat/sub-261382_space-ACPC_desc-aseg_dseg.nii.gz
acpc_brain_mask: /data/sub-261382/anat/sub-261382_space-ACPC_desc-brain_mask.nii.gz
acpc_csf_probseg: null
acpc_gm_probseg: null
acpc_preproc: /data/sub-261382/anat/sub-261382_space-ACPC_desc-preproc_T1w.nii.gz
acpc_seg: /data/sub-261382/anat/sub-261382_space-ACPC_dseg.nii.gz
acpc_to_template_xfm: /data/sub-261382/anat/sub-261382_from-ACPC_to-MNI152NLin2009cAsym_mode-image_xfm.h5
acpc_wm_probseg: null
orig_to_acpc_xfm: null
template_to_acpc_xfm: /data/sub-261382/anat/sub-261382_from-MNI152NLin2009cAsym_to-ACPC_mode-image_xfm.h5

250927-08:33:39,422 nipype.workflow INFO:
	 Found high-res anatomical data in preprocessed inputs for 261382.
250927-08:33:39,422 nipype.workflow INFO:
	 Freesurfer directory /output/derivatives/freesurfer/sub-261382 exists for 261382
250927-08:33:39,422 nipype.workflow INFO:
	 acpc_aparc (<class 'str'>): None (<class 'NoneType'>)
250927-08:33:39,422 nipype.workflow INFO:
	 acpc_seg (<class 'str'>): /data/sub-261382/anat/sub-261382_space-ACPC_dseg.nii.gz (<class 'str'>)
250927-08:33:39,422 nipype.workflow INFO:
	 acpc_aseg (<class 'str'>): /data/sub-261382/anat/sub-261382_space-ACPC_desc-aseg_dseg.nii.gz (<class 'str'>)
250927-08:33:39,422 nipype.workflow INFO:
	 acpc_brain_mask (<class 'str'>): /data/sub-261382/anat/sub-261382_space-ACPC_desc-brain_mask.nii.gz (<class 'str'>)
250927-08:33:39,422 nipype.workflow INFO:
	 acpc_preproc (<class 'str'>): /data/sub-261382/anat/sub-261382_space-ACPC_desc-preproc_T1w.nii.gz (<class 'str'>)
250927-08:33:39,423 nipype.workflow INFO:
	 acpc_csf_probseg (<class 'str'>): None (<class 'NoneType'>)
250927-08:33:39,423 nipype.workflow INFO:
	 acpc_gm_probseg (<class 'str'>): None (<class 'NoneType'>)
250927-08:33:39,423 nipype.workflow INFO:
	 acpc_wm_probseg (<class 'str'>): None (<class 'NoneType'>)
250927-08:33:39,423 nipype.workflow INFO:
	 orig_to_acpc_xfm (<class 'str'>): None (<class 'NoneType'>)
250927-08:33:39,423 nipype.workflow INFO:
	 template_to_acpc_xfm (<class 'str'>): /data/sub-261382/anat/sub-261382_from-MNI152NLin2009cAsym_to-ACPC_mode-image_xfm.h5 (<class 'str'>)
250927-08:33:39,423 nipype.workflow INFO:
	 acpc_to_template_xfm (<class 'str'>): /data/sub-261382/anat/sub-261382_from-ACPC_to-MNI152NLin2009cAsym_mode-image_xfm.h5 (<class 'str'>)
250927-08:33:39,423 nipype.workflow INFO:
	 Found 1 high-res anatomicals to process
250927-08:33:39,429 nipype.workflow INFO:
	 Transforming ODF ROIs into DWI space for visual report.
250927-08:33:39,433 nipype.workflow INFO:
	 skipping ODF plots for msmt_csd
250927-08:33:39,434 nipype.interface INFO:
	 Response configuration: {'algorithm': 'dhollander', 'nthreads': 8}
250927-08:33:39,434 nipype.interface INFO:
	 Using 8 threads in MRtrix3
250927-08:33:39,443 nipype.workflow INFO:
	 skipping ODF plots for track_ifod2
250927-08:33:39,448 nipype.workflow INFO:
	 skipping ODF plots for pyafq_tractometry
250927-08:33:42,732 nipype.workflow INFO:
	 QSIRecon workflow graph with 53 nodes built successfully.
250927-08:33:54,189 nipype.workflow IMPORTANT:
	 QSIRecon started!
250927-08:33:57,308 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_ingressed_dwi_data" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_ingressed_dwi_data".
250927-08:33:57,334 nipype.workflow INFO:
	 [Node] Executing "sub_261382_space_ACPC_desc_preproc_ingressed_dwi_data" <qsirecon.interfaces.ingress.QSIPrepDWIIngress>
250927-08:33:57,341 nipype.workflow INFO:
	 [Node] Finished "sub_261382_space_ACPC_desc_preproc_ingressed_dwi_data", elapsed time 0.001819s.
250927-08:33:57,680 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.get_template" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/get_template".
250927-08:33:57,722 nipype.workflow INFO:
	 [Node] Executing "get_template" <qsirecon.interfaces.anatomical.GetTemplate>
250927-08:33:57,757 nipype.workflow INFO:
	 [Node] Finished "get_template", elapsed time 0.018604s.
250927-08:33:58,513 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.resample_mask" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/resample_mask".
250927-08:33:58,514 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.odf_rois" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/odf_rois".
250927-08:33:58,539 nipype.workflow INFO:
	 [Node] Executing "odf_rois" <nipype.interfaces.ants.resampling.ApplyTransforms>
250927-08:33:58,565 nipype.workflow INFO:
	 [Node] Executing "resample_mask" <nipype.interfaces.ants.resampling.ApplyTransforms>
250927-08:33:59,530 nipype.workflow INFO:
	 [Node] Finished "resample_mask", elapsed time 0.610677s.
250927-08:33:59,548 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.output_grid_wf.voxel_size_chooser" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/output_grid_wf/voxel_size_chooser".
250927-08:33:59,685 nipype.workflow INFO:
	 [Node] Executing "voxel_size_chooser" <qsirecon.interfaces.anatomical.VoxelSizeChooser>
250927-08:33:59,686 nipype.workflow INFO:
	 [Node] Finished "voxel_size_chooser", elapsed time 9.6e-05s.
250927-08:33:59,729 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.mask_template" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/mask_template".
250927-08:33:59,777 nipype.workflow INFO:
	 [Node] Executing "mask_template" <nipype.interfaces.afni.utils.Calc>
250927-08:34:01,449 nipype.interface WARNING:
	 Changing /output/sub-261382/dwi/sub-261382_space-ACPC_desc-brain_mask.nii.gz dtype from float64 to float64
250927-08:34:02,128 nipype.workflow INFO:
	 [Node] Finished "mask_template", elapsed time 2.348971s.
250927-08:34:02,520 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.reorient_to_lps" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/reorient_to_lps".
250927-08:34:02,566 nipype.workflow INFO:
	 [Node] Executing "reorient_to_lps" <nipype.interfaces.afni.utils.Resample>
250927-08:34:02,972 nipype.workflow INFO:
	 [Node] Finished "reorient_to_lps", elapsed time 0.401098s.
250927-08:34:04,520 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.output_grid_wf.autobox_template" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/output_grid_wf/autobox_template".
250927-08:34:04,584 nipype.workflow INFO:
	 [Node] Executing "autobox_template" <nipype.interfaces.afni.utils.Autobox>
250927-08:34:06,199 nipype.workflow INFO:
	 [Node] Finished "autobox_template", elapsed time 0.597488s.
250927-08:34:06,497 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.output_grid_wf.deoblique_autobox" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/output_grid_wf/deoblique_autobox".
250927-08:34:06,548 nipype.workflow INFO:
	 [Node] Executing "deoblique_autobox" <nipype.interfaces.afni.preprocess.Warp>
250927-08:34:07,268 nipype.workflow INFO:
	 [Node] Finished "deoblique_autobox", elapsed time 0.719986s.
250927-08:34:14,539 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf.output_grid_wf.resample_to_voxel_size" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_dwi_specific_anat_wf/output_grid_wf/resample_to_voxel_size".
250927-08:34:15,479 nipype.workflow INFO:
	 [Node] Executing "resample_to_voxel_size" <nipype.interfaces.afni.utils.Resample>
250927-08:34:15,867 nipype.workflow INFO:
	 [Node] Finished "resample_to_voxel_size", elapsed time 0.386951s.
250927-08:34:37,906 nipype.workflow INFO:
	 [Node] Finished "odf_rois", elapsed time 39.004529s.
250927-08:34:39,433 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_inputs" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_inputs".
250927-08:34:39,483 nipype.workflow INFO:
	 [Node] Executing "sub_261382_space_ACPC_desc_preproc_recon_inputs" <qsirecon.interfaces.interchange.ReconWorkflowInputs>
250927-08:34:39,485 nipype.workflow INFO:
	 [Node] Finished "sub_261382_space_ACPC_desc_preproc_recon_inputs", elapsed time 0.000314s.
250927-08:34:40,530 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.msmt_csd.create_mif" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_wf/msmt_csd/create_mif".
250927-08:34:40,586 nipype.workflow INFO:
	 [Node] Executing "create_mif" <qsirecon.interfaces.mrtrix.MRTrixIngress>
250927-08:34:57,326 nipype.interface INFO:
	 stderr 2025-09-27T08:34:57.326895:[?7l
mrconvert: [  0%] uncompressing image "/data/sub-261382/dwi/sub-261382_space-ACPC_desc-preproc_dwi.nii.gz"...[?7h[?7l
mrconvert: [  1%] uncompressing image "/data/sub-261382/dwi/sub-261382_space-ACPC_desc-preproc_dwi.nii.gz"...[?7h[?7l
mrconvert: [  2%] uncompressing image "/data/sub-261382/dwi/sub-261382_space-ACPC_desc-preproc_dwi.nii.gz"...[?7h[?7l
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mrconvert: [  4%] uncompressing image "/data/sub-261382/dwi/sub-261382_space-ACPC_desc-preproc_dwi.nii.gz"...[?7h[?7l
mrconvert: [  5%] uncompressing image "/data/sub-261382/dwi/sub-261382_space-ACPC_desc-preproc_dwi.nii.gz"...[?7h[?7l
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mrconvert: [100%] uncompressing image "/data/sub-261382/dwi/sub-261382_space-ACPC_desc-preproc_dwi.nii.gz"
250927-08:35:10,844 nipype.interface INFO:
	 stderr 2025-09-27T08:35:10.844648:[?7l
mrconvert: [  0%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
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mrconvert: [ 91%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [ 92%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [ 93%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [ 94%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [ 95%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [ 96%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [ 97%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [ 98%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [ 99%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h[?7l
mrconvert: [100%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"...[?7h
mrconvert: [100%] copying from "/data/sub-...CPC_desc-preproc_dwi.nii.gz" to "/work/qsir...e-ACPC_desc-preproc_dwi.mif"
250927-08:35:13,524 nipype.workflow INFO:
	 [Node] Finished "create_mif", elapsed time 32.936533s.
250927-08:35:14,561 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.msmt_csd.estimate_response" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_wf/msmt_csd/estimate_response".
250927-08:35:14,641 nipype.workflow INFO:
	 [Node] Executing "estimate_response" <qsirecon.interfaces.mrtrix.SS3TDwi2Response>
250927-08:36:32,226 nipype.workflow INFO:
	 [Node] Finished "estimate_response", elapsed time 77.487235s.
250927-08:36:32,627 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.msmt_csd.estimate_fod" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_wf/msmt_csd/estimate_fod".
250927-08:36:32,672 nipype.workflow INFO:
	 [Node] Executing "estimate_fod" <qsirecon.interfaces.mrtrix.EstimateFOD>
250927-09:38:17,379 nipype.workflow INFO:
	 [Node] Finished "estimate_fod", elapsed time 3704.627856s.
250927-09:38:17,985 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.msmt_csd.intensity_norm" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_wf/msmt_csd/intensity_norm".
250927-09:38:18,32 nipype.workflow INFO:
	 [Node] Executing "intensity_norm" <qsirecon.interfaces.mrtrix.MTNormalize>
250927-09:38:42,880 nipype.workflow INFO:
	 [Node] Finished "intensity_norm", elapsed time 24.747627s.
250927-09:39:14,224 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.track_ifod2.tractography" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_wf/track_ifod2/tractography".
250927-09:39:14,255 nipype.workflow INFO:
	 [Node] Executing "tractography" <qsirecon.interfaces.mrtrix.TckGen>
250927-10:05:08,935 nipype.workflow INFO:
	 [Node] Finished "tractography", elapsed time 1554.679166s.
250927-10:05:09,700 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.track_ifod2.tck_sift2" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_wf/track_ifod2/tck_sift2".
250927-10:05:09,768 nipype.workflow INFO:
	 [Node] Executing "tck_sift2" <qsirecon.interfaces.mrtrix.SIFT2>
250927-10:06:31,957 nipype.workflow INFO:
	 [Node] Setting-up "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.pyafq_tractometry.run_afq" in "/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_wf/pyafq_tractometry/run_afq".
250927-10:06:32,27 nipype.workflow INFO:
	 [Node] Executing "run_afq" <qsirecon.interfaces.pyafq.PyAFQRecon>
250927-10:06:43,777 nipype.workflow INFO:
	 [Node] Finished "run_afq", elapsed time 11.719151s.
250927-10:06:43,777 nipype.workflow WARNING:
	 Storing result file without outputs
250927-10:06:43,788 nipype.workflow WARNING:
	 [Node] Error on "qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.pyafq_tractometry.run_afq" (/work/qsirecon_1_1_wf/sub-261382_mrtrix_multishell_msmt_pyafq_tractometry/sub_261382_space_ACPC_desc_preproc_recon_wf/pyafq_tractometry/run_afq)
250927-10:06:45,218 nipype.workflow ERROR:
	 Node run_afq failed to run on host cn1633.hw.accre.vu.
250927-10:06:45,225 nipype.workflow ERROR:
	 Saving crash info to /output/sub-261382/log/20250927-083327_c2d4530e-0a6e-4f4a-8fa7-2323e55604b8/crash-20250927-100645-harrioem-run_afq-978fb3b3-6042-4afd-98fe-8b25883ae3ce.txt
Traceback (most recent call last):
  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py", line 66, in run_node
    result["result"] = node.run(updatehash=updatehash)
  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 525, in run
    result = self._run_interface(execute=True)
  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_interface
    return self._run_command(execute)
  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 769, in _run_command
    raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node run_afq.

Traceback:
	Traceback (most recent call last):
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/data.py", line 340, in csd_params
	    csdf = csd_fit_model(
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/models/csd.py", line 67, in _fit
	    return _model(gtab, data, response, sh_order, csd_fa_thr).fit(
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/models/csd.py", line 56, in _model
	    raise CsdNanResponseError
	AFQ.models.csd.CsdNanResponseError

	The above exception was the direct cause of the following exception:

	Traceback (most recent call last):
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 401, in run
	    runtime = self._run_interface(runtime)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/qsirecon/interfaces/pyafq.py", line 114, in _run_interface
	    myafq.export_all()
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/api/participant.py", line 201, in export_all
	    export_all_helper(self, xforms, indiv, viz)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/api/utils.py", line 121, in export_all_helper
	    api_afq_object.export("template_xform")
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/api/participant.py", line 155, in export
	    return self.wf_dict[section][attr_name]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 90, in __call__
	    args.append(opts[name])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 889, in __getitem__
	    return self._examine_val(k, ps.PMap.__getitem__(self, k))
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 885, in _examine_val
	    val = val()
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1164, in <lambda>
	    def curry_choice(k, args): return lambda:choose_fn(k, args)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1133, in _choose_last
	    return vs[-1][k]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 90, in __call__
	    args.append(opts[name])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 889, in __getitem__
	    return self._examine_val(k, ps.PMap.__getitem__(self, k))
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 885, in _examine_val
	    val = val()
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1164, in <lambda>
	    def curry_choice(k, args): return lambda:choose_fn(k, args)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1133, in _choose_last
	    return vs[-1][k]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 91, in __call__
	    result = self.function(*args)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/mapping.py", line 212, in get_reg_subject
	    reg_subject_spec = data_imap[filename_dict[reg_subject_spec]]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 90, in __call__
	    args.append(opts[name])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 889, in __getitem__
	    return self._examine_val(k, ps.PMap.__getitem__(self, k))
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 885, in _examine_val
	    val = val()
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1164, in <lambda>
	    def curry_choice(k, args): return lambda:choose_fn(k, args)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1133, in _choose_last
	    return vs[-1][k]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 91, in __call__
	    result = self.function(*args)
	  File "<string>", line 2, in wrapper_has_args_func
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/decorators.py", line 146, in wrapper_as_file
	    gen, meta = func(*args[:og_arg_count], **kwargs)
	  File "<string>", line 2, in wrapper_has_args_func
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/decorators.py", line 216, in wrapper_as_img
	    data, meta = func(*args[:og_arg_count], **kwargs)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/data.py", line 347, in csd_params
	    raise CsdNanResponseError(
	AFQ.models.csd.CsdNanResponseError: Could not compute CSD response function for file: 
	<class 'nibabel.nifti1.Nifti1Image'>
	data shape (161, 197, 171, 99)
	affine:
	[[ -1.   0.   0.  80.]
	 [  0.  -1.   0.  81.]
	 [  0.   0.   1. -80.]
	 [  0.   0.   0.   1.]]
	metadata:
	<class 'nibabel.nifti1.Nifti1Header'> object, endian='<'
	sizeof_hdr      : 348
	data_type       : b''
	db_name         : b''
	extents         : 0
	session_error   : 0
	regular         : b''
	dim_info        : 0
	dim             : [  4 161 197 171  99   1   1   1]
	intent_p1       : 0.0
	intent_p2       : 0.0
	intent_p3       : 0.0
	intent_code     : none
	datatype        : float64
	bitpix          : 64
	slice_start     : 0
	pixdim          : [1. 1. 1. 1. 1. 1. 1. 1.]
	vox_offset      : 0.0
	scl_slope       : nan
	scl_inter       : nan
	slice_end       : 0
	slice_code      : unknown
	xyzt_units      : 0
	cal_max         : 0.0
	cal_min         : 0.0
	slice_duration  : 0.0
	toffset         : 0.0
	glmax           : 0
	glmin           : 0
	descrip         : b''
	aux_file        : b''
	qform_code      : unknown
	sform_code      : aligned
	quatern_b       : 0.0
	quatern_c       : 0.0
	quatern_d       : 1.0
	qoffset_x       : 80.0
	qoffset_y       : 81.0
	qoffset_z       : -80.0
	srow_x          : [-1.  0.  0. 80.]
	srow_y          : [ 0. -1.  0. 81.]
	srow_z          : [  0.   0.   1. -80.]
	intent_name     : b''
	magic           : b'n+1'
	.


250927-10:08:47,130 nipype.workflow INFO:
	 [Node] Finished "tck_sift2", elapsed time 217.360318s.
250927-10:08:49,326 nipype.workflow ERROR:
	 could not run node: qsirecon_1_1_wf.sub-261382_mrtrix_multishell_msmt_pyafq_tractometry.sub_261382_space_ACPC_desc_preproc_recon_wf.pyafq_tractometry.run_afq
250927-10:08:49,373 nipype.workflow CRITICAL:
	 QSIRecon failed: Traceback (most recent call last):
  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py", line 66, in run_node
    result["result"] = node.run(updatehash=updatehash)
  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 525, in run
    result = self._run_interface(execute=True)
  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_interface
    return self._run_command(execute)
  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 769, in _run_command
    raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node run_afq.

Traceback:
	Traceback (most recent call last):
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/data.py", line 340, in csd_params
	    csdf = csd_fit_model(
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/models/csd.py", line 67, in _fit
	    return _model(gtab, data, response, sh_order, csd_fa_thr).fit(
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/models/csd.py", line 56, in _model
	    raise CsdNanResponseError
	AFQ.models.csd.CsdNanResponseError

	The above exception was the direct cause of the following exception:

	Traceback (most recent call last):
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 401, in run
	    runtime = self._run_interface(runtime)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/qsirecon/interfaces/pyafq.py", line 114, in _run_interface
	    myafq.export_all()
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/api/participant.py", line 201, in export_all
	    export_all_helper(self, xforms, indiv, viz)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/api/utils.py", line 121, in export_all_helper
	    api_afq_object.export("template_xform")
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/api/participant.py", line 155, in export
	    return self.wf_dict[section][attr_name]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 90, in __call__
	    args.append(opts[name])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 889, in __getitem__
	    return self._examine_val(k, ps.PMap.__getitem__(self, k))
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 885, in _examine_val
	    val = val()
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1164, in <lambda>
	    def curry_choice(k, args): return lambda:choose_fn(k, args)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1133, in _choose_last
	    return vs[-1][k]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 90, in __call__
	    args.append(opts[name])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 889, in __getitem__
	    return self._examine_val(k, ps.PMap.__getitem__(self, k))
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 885, in _examine_val
	    val = val()
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1164, in <lambda>
	    def curry_choice(k, args): return lambda:choose_fn(k, args)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1133, in _choose_last
	    return vs[-1][k]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 91, in __call__
	    result = self.function(*args)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/mapping.py", line 212, in get_reg_subject
	    reg_subject_spec = data_imap[filename_dict[reg_subject_spec]]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 90, in __call__
	    args.append(opts[name])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 889, in __getitem__
	    return self._examine_val(k, ps.PMap.__getitem__(self, k))
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 885, in _examine_val
	    val = val()
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1164, in <lambda>
	    def curry_choice(k, args): return lambda:choose_fn(k, args)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/util.py", line 1133, in _choose_last
	    return vs[-1][k]
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 470, in __getitem__
	    self._run_node(self.plan.efferents[k])
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 534, in _run_node
	    if not found: res = node(self)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/pimms/calculation.py", line 91, in __call__
	    result = self.function(*args)
	  File "<string>", line 2, in wrapper_has_args_func
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/decorators.py", line 146, in wrapper_as_file
	    gen, meta = func(*args[:og_arg_count], **kwargs)
	  File "<string>", line 2, in wrapper_has_args_func
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/decorators.py", line 216, in wrapper_as_img
	    data, meta = func(*args[:og_arg_count], **kwargs)
	  File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/AFQ/tasks/data.py", line 347, in csd_params
	    raise CsdNanResponseError(
	AFQ.models.csd.CsdNanResponseError: Could not compute CSD response function for file: 
	<class 'nibabel.nifti1.Nifti1Image'>
	data shape (161, 197, 171, 99)
	affine:
	[[ -1.   0.   0.  80.]
	 [  0.  -1.   0.  81.]
	 [  0.   0.   1. -80.]
	 [  0.   0.   0.   1.]]
	metadata:
	<class 'nibabel.nifti1.Nifti1Header'> object, endian='<'
	sizeof_hdr      : 348
	data_type       : b''
	db_name         : b''
	extents         : 0
	session_error   : 0
	regular         : b''
	dim_info        : 0
	dim             : [  4 161 197 171  99   1   1   1]
	intent_p1       : 0.0
	intent_p2       : 0.0
	intent_p3       : 0.0
	intent_code     : none
	datatype        : float64
	bitpix          : 64
	slice_start     : 0
	pixdim          : [1. 1. 1. 1. 1. 1. 1. 1.]
	vox_offset      : 0.0
	scl_slope       : nan
	scl_inter       : nan
	slice_end       : 0
	slice_code      : unknown
	xyzt_units      : 0
	cal_max         : 0.0
	cal_min         : 0.0
	slice_duration  : 0.0
	toffset         : 0.0
	glmax           : 0
	glmin           : 0
	descrip         : b''
	aux_file        : b''
	qform_code      : unknown
	sform_code      : aligned
	quatern_b       : 0.0
	quatern_c       : 0.0
	quatern_d       : 1.0
	qoffset_x       : 80.0
	qoffset_y       : 81.0
	qoffset_z       : -80.0
	srow_x          : [-1.  0.  0. 80.]
	srow_y          : [ 0. -1.  0. 81.]
	srow_z          : [  0.   0.   1. -80.]
	intent_name     : b''
	magic           : b'n+1'
	.


250927-10:08:49,381 nipype.utils WARNING:
	 DatasetType key not in /data/dataset_description.json. Assuming 'derivative'.
250927-10:08:50,110 nipype.utils WARNING:
	 DatasetType key not in /data/dataset_description.json. Assuming 'derivative'.
250927-10:08:50,509 nipype.utils WARNING:
	 DatasetType key not in /data/dataset_description.json. Assuming 'derivative'.