QSIPREPV2 jeu. août 10 22:17:42 CEST 2023 230810-22:21:30,192 nipype.workflow INFO: Running with omp_nthreads=16, nthreads=32 230810-22:21:30,195 nipype.workflow IMPORTANT: Running qsiprep version 0.18.1: * BIDS dataset path: /data. * Participant list: ['JEU26']. * Run identifier: 20230810-221751_c875f1ad-a24e-4395-8319-7d126b236b20. 230810-22:22:09,592 nipype.workflow INFO: Running nonlinear normalization to template 230810-22:22:14,638 nipype.workflow INFO: Combining all dwi files within each available session: 230810-22:22:14,639 nipype.workflow INFO: - 2 scans in session 01 230810-22:22:14,639 nipype.workflow INFO: - 0 scans in session pre 230810-22:22:14,639 nipype.workflow INFO: - 0 scans in session pst 230810-22:22:14,681 nipype.workflow INFO: [{'dwi_series': ['/data/sub-JEU26/ses-01/dwi/sub-JEU26_ses-01_dir-PA_dwi.nii.gz'], 'dwi_series_pedir': 'j', 'fieldmap_info': {'suffix': 'rpe_series', 'rpe_series': ['/data/sub-JEU26/ses-01/dwi/sub-JEU26_ses-01_dir-AP_dwi.nii.gz']}, 'concatenated_bids_name': 'sub-JEU26_ses-01'}] 230810-22:22:14,834 nipype.workflow IMPORTANT: Creating dwi processing workflow "dwi_preproc_ses_01_wf" to produce output sub-JEU26_ses-01 (1.16 GB / 119 DWIs). Memory resampled/largemem=1.66/1.84 GB. 230810-22:22:15,123 nipype.workflow INFO: Using 16 threads in eddy 230810-22:22:18,104 nipype.workflow IMPORTANT: Works derived from this qsiprep execution should include the following boilerplate: Preprocessing was performed using *QSIPrep* 0.18.1, which is based on *Nipype* 1.8.6 (@nipype1; @nipype2; RRID:SCR_002502). Anatomical data preprocessing : The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU) using `N4BiasFieldCorrection` [@n4, ANTs 2.4.3], and used as an anatomical reference throughout the workflow. The anatomical reference image was reoriented into AC-PC alignment via a 6-DOF transform extracted from a full Affine registration to the MNI152NLin2009cAsym template. A full nonlinear registration to the template from AC-PC space was estimated via symmetric nonlinear registration (SyN) using antsRegistration. Brain extraction was performed on the T1w image using SynthStrip [@synthstrip] and automated segmentation was performed using SynthSeg [@synthseg1, @synthseg2] from FreeSurfer version 7.3.1. Diffusion data preprocessing : Images were grouped into two phase encoding polarity groups. Any images with a b-value less than 50 s/mm^2 were treated as a *b*=0 image. MP-PCA denoising as implemented in MRtrix3's `dwidenoise`[@dwidenoise1] was applied with a 5-voxel window. After MP-PCA, Gibbs unringing was performed using MRtrix3's `mrdegibbs` [@mrdegibbs]. Following unringing, the mean intensity of the DWI series was adjusted so all the mean intensity of the b=0 images matched across eachseparate DWI scanning sequence. B1 field inhomogeneity was corrected using `dwibiascorrect` from MRtrix3 with the N4 algorithm [@n4] after corrected images were resampled.Both distortion groups were then merged into a single file, as required for the FSL workflows. FSL (version 6.0.5.1:57b01774)'s eddy was used for head motion correction and Eddy current correction [@anderssoneddy]. Eddy was configured with a $q$-space smoothing factor of 10, a total of 5 iterations, and 1000 voxels used to estimate hyperparameters. A quadratic first level model and a linear second level model were used to characterize Eddy current-related spatial distortion. $q$-space coordinates were forcefully assigned to shells. Field offset was attempted to be separated from subject movement. Shells were aligned post-eddy. Eddy's outlier replacement was run [@eddyrepol]. Data were grouped by slice, only including values from slices determined to contain at least 250 intracerebral voxels. Groups deviating by more than 4 standard deviations from the prediction had their data replaced with imputed values. Slice-to-volume correction was estimated with temporal order 8, 5 iterations, trilinear interpolation and lambda=1.000 [@eddys2v]. Data was collected with reversed phase-encode blips, resulting in pairs of images with distortions going in opposite directions. Here, multiple DWI series were acquired with opposite phase encoding directions, so b=0 images were extracted from each. From these pairs the susceptibility-induced off-resonance field was estimated using a method similar to that described in [@topup]. The fieldmaps were ultimately incorporated into the Eddy current and head motion correction interpolation. Dynamic susceptibility distortion correction was applied with 10 iterations, lambda=10.00 and spline knot-spacing of 10.00mm [@eddysus]. Final interpolation was performed using the `jac` method. Several confounding time-series were calculated based on the preprocessed DWI: framewise displacement (FD) using the implementation in *Nipype* [following the definitions by @power_fd_dvars]. The head-motion estimates calculated in the correction step were also placed within the corresponding confounds file. Slicewise cross correlation was also calculated. The DWI time-series were resampled to ACPC, generating a *preprocessed DWI run in ACPC space* with 1mm isotropic voxels. Many internal operations of *QSIPrep* use *Nilearn* 0.10.1 [@nilearn, RRID:SCR_001362] and *Dipy* [@dipy]. For more details of the pipeline, see [the section corresponding to workflows in *QSIPrep*'s documentation](https://qsiprep.readthedocs.io/en/latest/workflows.html "QSIPrep's documentation"). ### References 230810-22:22:23,711 nipype.workflow INFO: Generated workflow graph: /tmp/qsiprep_wf/graph.svg (graph2use=colored, simple_form=True). 230810-22:22:24,258 nipype.workflow INFO: Workflow qsiprep_wf settings: ['check', 'execution', 'logging', 'monitoring'] 230810-22:22:24,560 nipype.workflow INFO: Running in parallel. 230810-22:22:24,569 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:22:24,699 nipype.workflow INFO: [Job 0] Cached (qsiprep_wf.single_subject_JEU26_wf.bidssrc). 230810-22:22:24,702 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.about". 230810-22:22:24,702 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.about" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/about". 230810-22:22:24,702 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.about". 230810-22:22:24,716 nipype.workflow INFO: [Node] Executing "about" 230810-22:22:24,717 nipype.workflow INFO: [Node] Finished "about", elapsed time 0.001194s. 230810-22:22:24,723 nipype.workflow INFO: [Job 1] Completed (qsiprep_wf.single_subject_JEU26_wf.about). 230810-22:22:24,852 nipype.workflow INFO: [Job 2] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.get_template_image). 230810-22:22:24,856 nipype.workflow INFO: [Job 3] Cached (qsiprep_wf.single_subject_JEU26_wf.sub_JEU26_ses_01_final_merge_wf.merge_b0_refs). 230810-22:22:24,859 nipype.workflow INFO: [Job 4] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.conform_dwis01). 230810-22:22:24,861 nipype.workflow INFO: [Job 5] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.noise_images). 230810-22:22:24,863 nipype.workflow INFO: [Job 6] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.bias_images). 230810-22:22:24,866 nipype.workflow INFO: [Job 7] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.conform_dwis01). 230810-22:22:24,869 nipype.workflow INFO: [Job 8] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.noise_images). 230810-22:22:24,872 nipype.workflow INFO: [Job 9] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.bias_images). 230810-22:22:26,572 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:22:26,743 nipype.workflow INFO: [Job 10] Cached (qsiprep_wf.single_subject_JEU26_wf.bids_info). 230810-22:22:26,748 nipype.workflow INFO: [Job 11] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_template_wf.template_dimensions). 230810-22:22:26,756 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.ds_report_about". 230810-22:22:26,756 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.ds_report_about" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/ds_report_about". 230810-22:22:26,757 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.ds_report_about". 230810-22:22:26,768 nipype.workflow INFO: [Node] Executing "ds_report_about" 230810-22:22:26,843 nipype.workflow INFO: [Node] Finished "ds_report_about", elapsed time 0.074478s. 230810-22:22:26,849 nipype.workflow INFO: [Job 12] Completed (qsiprep_wf.single_subject_JEU26_wf.ds_report_about). 230810-22:22:27,35 nipype.workflow INFO: [Job 13] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.output_grid_wf.autobox_template). 230810-22:22:27,105 nipype.workflow INFO: [Job 14] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.conformed_raw_images). 230810-22:22:27,111 nipype.workflow INFO: [Job 15] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.conformation_reports). 230810-22:22:27,118 nipype.workflow INFO: [Job 16] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.dwi_denoise_ses_01_dir_PA_dwi_wf.denoiser). 230810-22:22:27,124 nipype.workflow INFO: [Job 17] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.conformed_bvals). 230810-22:22:27,129 nipype.workflow INFO: [Job 18] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.conformed_bvecs). 230810-22:22:27,169 nipype.workflow INFO: [Job 19] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.conformed_raw_images). 230810-22:22:27,175 nipype.workflow INFO: [Job 20] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.conformation_reports). 230810-22:22:27,182 nipype.workflow INFO: [Job 22] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.conformed_bvals). 230810-22:22:27,187 nipype.workflow INFO: [Job 23] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.conformed_bvecs). 230810-22:22:27,219 nipype.workflow INFO: [Job 24] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_noise). 230810-22:22:27,303 nipype.workflow INFO: [Job 25] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_bias). 230810-22:22:28,575 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:22:28,730 nipype.workflow INFO: [Job 21] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.dwi_denoise_ses_01_dir_AP_dwi_wf.denoiser). 230810-22:22:28,782 nipype.workflow INFO: [Job 26] Cached (qsiprep_wf.single_subject_JEU26_wf.summary). 230810-22:22:28,858 nipype.workflow INFO: [Job 27] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_template_wf.anat_conform). 230810-22:22:28,864 nipype.workflow INFO: [Job 28] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.t1_name). 230810-22:22:28,963 nipype.workflow INFO: [Node] Setting-up "_ds_t1_template_transforms0" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_transforms/mapflow/_ds_t1_template_transforms0". 230810-22:22:28,977 nipype.workflow INFO: [Node] Executing "_ds_t1_template_transforms0" 230810-22:22:28,986 nipype.workflow INFO: [Node] Finished "_ds_t1_template_transforms0", elapsed time 0.008035s. 230810-22:22:28,995 nipype.workflow INFO: [Job 29] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_transforms). 230810-22:22:29,146 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_reports_wf/ds_t1_conform_report". 230810-22:22:29,156 nipype.workflow INFO: [Node] Executing "ds_t1_conform_report" 230810-22:22:29,224 nipype.workflow INFO: [Node] Finished "ds_t1_conform_report", elapsed time 0.067526s. 230810-22:22:29,229 nipype.workflow INFO: [Job 30] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_reports_wf.ds_t1_conform_report). 230810-22:22:29,403 nipype.workflow INFO: [Job 31] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.output_grid_wf.deoblique_autobox). 230810-22:22:29,432 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.dwi_denoise_ses_01_dir_PA_dwi_wf.ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_denoising" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/merge_plus/dwi_denoise_ses_01_dir_PA_dwi_wf/ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_denoising". 230810-22:22:29,445 nipype.workflow INFO: [Node] Executing "ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_denoising" 230810-22:32:29,873 nipype.workflow INFO: [Node] Finished "ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_denoising", elapsed time 600.426113s. 230810-22:32:29,879 nipype.workflow INFO: [Job 33] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.dwi_denoise_ses_01_dir_PA_dwi_wf.ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_denoising). 230810-22:32:30,42 nipype.workflow INFO: [Job 36] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_validation). 230810-22:32:30,44 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:32:30,188 nipype.workflow INFO: [Job 32] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.raw_merge). 230810-22:32:30,193 nipype.workflow INFO: [Job 34] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.dwi_denoise_ses_01_dir_PA_dwi_wf.degibbser). 230810-22:32:32,47 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:32:32,197 nipype.workflow INFO: [Job 35] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.raw_merge). 230810-22:32:32,262 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.dwi_denoise_ses_01_dir_AP_dwi_wf.ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_denoising" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/merge_minus/dwi_denoise_ses_01_dir_AP_dwi_wf/ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_denoising". 230810-22:32:32,273 nipype.workflow INFO: [Node] Executing "ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_denoising" 230810-22:32:32,501 nipype.workflow INFO: [Node] Finished "ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_denoising", elapsed time 0.227295s. 230810-22:32:32,506 nipype.workflow INFO: [Job 37] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.dwi_denoise_ses_01_dir_AP_dwi_wf.ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_denoising). 230810-22:32:32,637 nipype.workflow INFO: [Job 38] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.dwi_denoise_ses_01_dir_AP_dwi_wf.degibbser). 230810-22:32:34,48 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:32:34,225 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.ds_report_summary" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/ds_report_summary". 230810-22:32:34,236 nipype.workflow INFO: [Node] Executing "ds_report_summary" 230810-22:32:34,258 nipype.workflow INFO: [Node] Finished "ds_report_summary", elapsed time 0.02119s. 230810-22:32:34,263 nipype.workflow INFO: [Job 39] Completed (qsiprep_wf.single_subject_JEU26_wf.ds_report_summary). 230810-22:32:34,411 nipype.workflow INFO: [Job 40] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_template_wf.n4_correct). 230810-22:32:34,416 nipype.workflow INFO: [Job 41] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.pad_anat_reference_wf.skulled_1mm_resample). 230810-22:32:34,447 nipype.workflow INFO: [Job 42] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.output_grid_wf.resample_to_voxel_size). 230810-22:32:34,488 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.dwi_denoise_ses_01_dir_PA_dwi_wf.ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_unringing" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/merge_plus/dwi_denoise_ses_01_dir_PA_dwi_wf/ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_unringing". 230810-22:32:34,499 nipype.workflow INFO: [Node] Executing "ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_unringing" 230810-22:32:34,630 nipype.workflow INFO: [Node] Finished "ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_unringing", elapsed time 0.130196s. 230810-22:32:34,635 nipype.workflow INFO: [Job 43] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.dwi_denoise_ses_01_dir_PA_dwi_wf.ds_report_dwi_denoise_ses_01_dir_PA_dwi_wf_unringing). 230810-22:32:34,768 nipype.workflow INFO: [Job 44] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.dwi_denoise_ses_01_dir_PA_dwi_wf.merge_confounds). 230810-22:32:34,772 nipype.workflow INFO: [Job 45] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.conformed_images). 230810-22:32:34,819 nipype.workflow INFO: [Job 46] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_raw_images). 230810-22:32:34,849 nipype.workflow INFO: [Job 47] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.summary). 230810-22:32:34,891 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.dwi_denoise_ses_01_dir_AP_dwi_wf.ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_unringing" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/merge_minus/dwi_denoise_ses_01_dir_AP_dwi_wf/ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_unringing". 230810-22:32:34,903 nipype.workflow INFO: [Node] Executing "ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_unringing" 230810-22:37:35,81 nipype.workflow INFO: [Node] Finished "ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_unringing", elapsed time 300.176993s. 230810-22:37:35,87 nipype.workflow INFO: [Job 48] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.dwi_denoise_ses_01_dir_AP_dwi_wf.ds_report_dwi_denoise_ses_01_dir_AP_dwi_wf_unringing). 230810-22:37:35,221 nipype.workflow INFO: [Job 49] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.dwi_denoise_ses_01_dir_AP_dwi_wf.merge_confounds). 230810-22:37:35,225 nipype.workflow INFO: [Job 50] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.conformed_images). 230810-22:37:35,227 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:37:35,378 nipype.workflow INFO: [Job 51] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.pad_anat_reference_wf.skulled_autobox). 230810-22:37:35,432 nipype.workflow INFO: [Job 52] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.dwi_denoise_ses_01_dir_PA_dwi_wf.hstack_confounds). 230810-22:37:35,512 nipype.workflow INFO: [Job 53] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.raw_rpe_concat). 230810-22:37:35,529 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.ds_report_summary" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/ds_report_summary". 230810-22:37:35,540 nipype.workflow INFO: [Node] Executing "ds_report_summary" 230810-22:37:35,565 nipype.workflow INFO: [Node] Finished "ds_report_summary", elapsed time 0.024766s. 230810-22:37:35,570 nipype.workflow INFO: [Job 54] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.ds_report_summary). 230810-22:37:35,760 nipype.workflow INFO: [Job 55] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.dwi_denoise_ses_01_dir_AP_dwi_wf.hstack_confounds). 230810-22:37:37,229 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:37:37,412 nipype.workflow INFO: [Job 56] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.pad_anat_reference_wf.prepare_synthstrip_reference). 230810-22:37:37,433 nipype.workflow INFO: [Job 57] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.denoising_confounds). 230810-22:37:37,462 nipype.workflow INFO: [Job 58] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.test_pre_hmc_connect). 230810-22:37:37,467 nipype.workflow INFO: [Job 59] Cached (qsiprep_wf.single_subject_JEU26_wf.sub_JEU26_ses_01_final_merge_wf.merge_raw_concatenated_image). 230810-22:37:37,519 nipype.workflow INFO: [Job 60] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.denoising_confounds). 230810-22:37:39,232 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:37:39,387 nipype.workflow INFO: [Job 61] Cached (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.pad_anat_reference_wf.resample_skulled_to_reference). 230810-22:37:39,551 nipype.workflow INFO: [Job 62] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_plus.merge_dwis). 230810-22:37:41,499 nipype.workflow INFO: [Job 63] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.merge_minus.merge_dwis). 230810-22:37:41,552 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip". 230810-22:37:43,235 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip 230810-22:37:47,445 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthseg_anat_wf.synthseg". 230810-22:37:47,480 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 0/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthseg_anat_wf.synthseg * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip 230810-22:37:52,976 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/synthstrip_anat_wf/synthstrip". 230810-22:37:52,977 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip". 230810-22:37:52,979 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthseg_anat_wf.synthseg" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/synthseg_anat_wf/synthseg". 230810-22:37:52,980 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthseg_anat_wf.synthseg". 230810-22:37:52,994 nipype.workflow INFO: [Node] Executing "synthstrip" 230810-22:37:53,18 nipype.workflow INFO: [Node] Executing "synthseg" 230810-22:40:07,260 nipype.workflow INFO: [Node] Finished "synthseg", elapsed time 134.12421s. 230810-22:40:07,271 nipype.workflow WARNING: Storing result file without outputs 230810-22:40:07,455 nipype.workflow WARNING: [Node] Error on "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthseg_anat_wf.synthseg" (/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/synthseg_anat_wf/synthseg) 230810-22:40:08,28 nipype.workflow ERROR: Node synthseg failed to run on host gpu013.cluster. 230810-22:40:08,977 nipype.workflow ERROR: Saving crash info to /out/qsiprep/sub-JEU26/log/20230810-221751_c875f1ad-a24e-4395-8319-7d126b236b20/crash-20230810-224008-lcorcos-synthseg-a6649fa7-fa0e-4e43-9535-8f8e1060bc50.txt Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node result["result"] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command raise NodeExecutionError(msg) nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node synthseg. Cmdline: mri_synthseg --i /tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/pad_anat_reference_wf/resample_skulled_to_reference/sub-JEU26_ses-01_T1w_lps_trans.nii.gz --threads 16 --post sub-JEU26_ses-01_T1w_lps_trans_post.nii.gz --qc sub-JEU26_ses-01_T1w_lps_trans_qc.csv --o sub-JEU26_ses-01_T1w_lps_trans_aseg.nii.gz Stdout: Stderr: Killed Traceback: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 453, in aggregate_outputs setattr(outputs, key, val) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate value = super(File, self).validate(objekt, name, value, return_pathlike=True) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate self.error(objekt, name, str(value)) File "/usr/local/miniconda/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error raise TraitError( traits.trait_errors.TraitError: The 'out_post' trait of a _SynthSegOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/synthseg_anat_wf/synthseg/sub-JEU26_ses-01_T1w_lps_trans_post.nii.gz' was specified. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 400, in run outputs = self.aggregate_outputs(runtime) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 460, in aggregate_outputs raise FileNotFoundError(msg) FileNotFoundError: No such file or directory '/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/synthseg_anat_wf/synthseg/sub-JEU26_ses-01_T1w_lps_trans_post.nii.gz' for output 'out_post' of a SynthSeg interface 230810-22:40:09,39 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip 230810-22:40:10,432 nipype.workflow INFO: [Job 66] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_dwis). 230810-22:40:24,124 nipype.workflow INFO: [Job 67] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_bids_dwis). 230810-22:40:24,458 nipype.workflow INFO: [Job 68] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_bvals). 230810-22:40:24,878 nipype.workflow INFO: [Job 69] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_bvecs). 230810-22:40:25,167 nipype.workflow INFO: [Job 70] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.pm_denoising_confounds). 230810-22:40:25,170 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip 230810-22:40:26,675 nipype.workflow INFO: [Node] Finished "synthstrip", elapsed time 153.663666s. 230810-22:40:26,734 nipype.workflow INFO: [Job 72] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.rpe_concat). 230810-22:40:27,170 nipype.workflow INFO: [Job 64] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip). 230810-22:40:27,172 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:40:27,305 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.mask_to_original_grid". 230810-22:40:27,409 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.mask_to_original_grid" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/synthstrip_anat_wf/mask_to_original_grid". 230810-22:40:27,411 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.mask_to_original_grid". 230810-22:40:27,414 nipype.workflow INFO: [Job 75] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_src). 230810-22:40:27,427 nipype.workflow INFO: [Node] Executing "mask_to_original_grid" 230810-22:40:28,316 nipype.workflow INFO: [Job 76] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.gather_inputs). 230810-22:40:28,321 nipype.workflow INFO: [Job 77] Cached (qsiprep_wf.single_subject_JEU26_wf.sub_JEU26_ses_01_final_merge_wf.merge_original_bvec). 230810-22:40:29,135 nipype.workflow INFO: [Node] Finished "mask_to_original_grid", elapsed time 1.206088s. 230810-22:40:29,196 nipype.workflow INFO: [Job 78] Cached (qsiprep_wf.single_subject_JEU26_wf.sub_JEU26_ses_01_final_merge_wf.merge_original_image). 230810-22:40:29,197 nipype.workflow INFO: [Job 71] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.mask_to_original_grid). 230810-22:40:29,199 nipype.workflow INFO: [MultiProc] Running 0 tasks, and 9 jobs ready. Free memory (GB): 338.88/338.88, Free processors: 32/32. 230810-22:40:29,332 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.mask_brain". 230810-22:40:29,396 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.mask_brain" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/synthstrip_anat_wf/mask_brain". 230810-22:40:29,396 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.mask_brain". 230810-22:40:29,408 nipype.workflow INFO: [Node] Executing "mask_brain" 230810-22:40:29,554 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.acpc_reg". 230810-22:40:29,796 nipype.workflow INFO: [Job 82] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.enhance_pre_sdc). 230810-22:40:30,228 nipype.workflow INFO: [Job 83] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.topup). 230810-22:40:30,620 nipype.workflow INFO: [Job 84] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.topup_to_eddy_reg). 230810-22:40:30,936 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.ds_topupcsv" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/ds_topupcsv". 230810-22:40:31,283 nipype.workflow INFO: [Node] Executing "ds_topupcsv" 230810-22:40:31,681 nipype.workflow INFO: [Node] Finished "ds_topupcsv", elapsed time 0.397278s. 230810-22:40:31,815 nipype.workflow INFO: [Job 85] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.ds_topupcsv). 230810-22:40:32,27 nipype.workflow INFO: [Node] Finished "mask_brain", elapsed time 2.499718s. 230810-22:40:32,226 nipype.workflow INFO: [Job 86] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.topup_summary). 230810-22:40:32,228 nipype.workflow INFO: [Job 73] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.synthstrip_anat_wf.mask_brain). 230810-22:40:32,229 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.acpc_reg 230810-22:40:32,344 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.acpc_reg" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_normalization_wf/acpc_reg". 230810-22:40:32,382 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.acpc_reg". 230810-22:40:32,399 nipype.workflow INFO: [Node] Executing "acpc_reg" 230810-22:40:32,442 nipype.workflow INFO: [Job 80] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_src_qc). 230810-22:40:34,231 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.acpc_reg 230810-22:40:36,38 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi". 230810-22:40:36,231 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 0/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.acpc_reg 230810-22:40:39,512 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi". 230810-22:40:39,513 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi". 230810-22:40:39,616 nipype.workflow INFO: [Node] Executing "raw_gqi" 230810-23:00:29,180 nipype.workflow INFO: [Node] Finished "acpc_reg", elapsed time 1196.75776s. 230810-23:00:29,775 nipype.workflow INFO: [Job 74] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.acpc_reg). 230810-23:00:29,776 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:00:30,124 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.disassemble_transform". 230810-23:00:30,611 nipype.workflow INFO: [Job 89] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.unwarped_mean). 230810-23:00:30,753 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.ds_report_topupsummary" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/ds_report_topupsummary". 230810-23:00:31,114 nipype.workflow INFO: [Node] Executing "ds_report_topupsummary" 230810-23:00:31,782 nipype.workflow INFO: [Node] Finished "ds_report_topupsummary", elapsed time 0.667318s. 230810-23:00:32,138 nipype.workflow INFO: [Job 90] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.ds_report_topupsummary). 230810-23:00:32,480 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 15/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.disassemble_transform * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:00:33,306 nipype.workflow INFO: [Job 100] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.pad_before_synthstrip_wf.skulled_1mm_resample). 230810-23:00:33,610 nipype.workflow INFO: [Job 101] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_to_lps). 230810-23:00:34,296 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.disassemble_transform" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_normalization_wf/disassemble_transform". 230810-23:00:34,323 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.disassemble_transform". 230810-23:00:34,486 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 15/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.disassemble_transform * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:00:34,703 nipype.workflow INFO: [Node] Executing "disassemble_transform" 230810-23:00:34,773 nipype.interface INFO: CompositeTransformUtil --disassemble /tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_normalization_wf/acpc_reg/transformComposite.h5 disassemble 230810-23:00:34,940 nipype.workflow INFO: [Job 108] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.pad_before_synthstrip_wf.skulled_autobox). 230810-23:00:35,136 nipype.workflow INFO: [Node] Finished "disassemble_transform", elapsed time 0.414964s. 230810-23:00:36,491 nipype.workflow INFO: [Job 79] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.disassemble_transform). 230810-23:00:36,492 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:00:36,870 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.extract_rigid_transform". 230810-23:00:37,135 nipype.workflow INFO: [Job 116] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.pad_before_synthstrip_wf.prepare_synthstrip_reference). 230810-23:00:38,498 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 15/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.extract_rigid_transform * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:00:39,172 nipype.workflow INFO: [Job 120] Cached (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.pad_before_synthstrip_wf.resample_skulled_to_reference). 230810-23:00:40,867 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.extract_rigid_transform" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_normalization_wf/extract_rigid_transform". 230810-23:00:40,893 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.extract_rigid_transform". 230810-23:00:41,187 nipype.workflow INFO: [Node] Executing "extract_rigid_transform" 230810-23:00:41,383 nipype.workflow INFO: [Node] Finished "extract_rigid_transform", elapsed time 0.179377s. 230810-23:00:42,515 nipype.workflow INFO: [Job 87] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.extract_rigid_transform). 230810-23:00:42,516 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:00:43,86 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_anat". 230810-23:00:43,247 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_anat" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_normalization_wf/rigid_acpc_resample_anat". 230810-23:00:43,256 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_anat". 230810-23:00:43,441 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask". 230810-23:00:43,490 nipype.workflow INFO: [Node] Executing "rigid_acpc_resample_anat" 230810-23:00:43,505 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_brain". 230810-23:00:43,545 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask". 230810-23:00:43,577 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_head". 230810-23:00:43,930 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/rigid_acpc_resample_mask". 230810-23:00:43,934 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask". 230810-23:00:43,935 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_head" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/rigid_acpc_resample_head". 230810-23:00:43,936 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_normalization_wf/rigid_acpc_resample_mask". 230810-23:00:43,936 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_brain" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/rigid_acpc_resample_brain". 230810-23:00:43,937 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_head". 230810-23:00:43,937 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_brain". 230810-23:00:43,938 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask". 230810-23:00:44,18 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_acpc_transforms". 230810-23:00:44,18 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_acpc_transforms" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_acpc_transforms". 230810-23:00:44,29 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_acpc_transforms". 230810-23:00:44,231 nipype.workflow INFO: [Node] Executing "rigid_acpc_resample_mask" 230810-23:00:44,285 nipype.workflow INFO: [Node] Executing "rigid_acpc_resample_mask" 230810-23:00:44,326 nipype.workflow INFO: [Node] Executing "rigid_acpc_resample_head" 230810-23:00:44,359 nipype.workflow INFO: [Node] Executing "rigid_acpc_resample_brain" 230810-23:00:44,375 nipype.workflow INFO: [Node] Executing "ds_t1_template_acpc_transforms" 230810-23:00:44,436 nipype.workflow INFO: [Node] Finished "ds_t1_template_acpc_transforms", elapsed time 0.059786s. 230810-23:00:44,489 nipype.workflow INFO: [Job 97] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_acpc_transforms). 230810-23:00:45,484 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_acpc_inv_transforms". 230810-23:00:45,484 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_acpc_inv_transforms" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_template_acpc_inv_transforms". 230810-23:00:45,506 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_acpc_inv_transforms". 230810-23:00:45,900 nipype.workflow INFO: [Node] Executing "ds_t1_template_acpc_inv_transforms" 230810-23:00:46,44 nipype.workflow INFO: [Node] Finished "ds_t1_template_acpc_inv_transforms", elapsed time 0.143297s. 230810-23:00:46,360 nipype.workflow INFO: [Job 98] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_template_acpc_inv_transforms). 230810-23:00:47,161 nipype.workflow INFO: [MultiProc] Running 6 tasks, and 1 jobs ready. Free memory (GB): 337.68/338.88, Free processors: 11/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_head * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_brain * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_anat * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:03:35,644 nipype.workflow INFO: [Node] Finished "rigid_acpc_resample_brain", elapsed time 170.416116s. 230810-23:03:37,558 nipype.workflow INFO: [Job 93] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_brain). 230810-23:03:37,560 nipype.workflow INFO: [MultiProc] Running 5 tasks, and 2 jobs ready. Free memory (GB): 337.88/338.88, Free processors: 12/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_head * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_anat * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:03:39,989 nipype.workflow INFO: [Node] Finished "rigid_acpc_resample_anat", elapsed time 175.903374s. 230810-23:03:41,568 nipype.workflow INFO: [Job 91] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_anat). 230810-23:03:41,569 nipype.workflow INFO: [MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 338.08/338.88, Free processors: 13/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_head * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:03:41,950 nipype.workflow INFO: [Node] Finished "rigid_acpc_resample_head", elapsed time 176.716493s. 230810-23:03:43,579 nipype.workflow INFO: [Job 95] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_head). 230810-23:03:43,580 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 3 jobs ready. Free memory (GB): 338.28/338.88, Free processors: 14/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi 230810-23:03:44,581 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc". 230810-23:03:44,581 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_preproc". 230810-23:03:44,603 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc". 230810-23:03:45,229 nipype.workflow INFO: [Node] Executing "ds_t1_preproc" 230810-23:04:01,38 nipype.workflow INFO: [Node] Finished "ds_t1_preproc", elapsed time 15.807829s. 230810-23:04:01,580 nipype.workflow INFO: [Job 105] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_preproc). 230810-23:04:02,36 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 338.28/338.88, Free processors: 14/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi current dir /tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi input src /tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi/sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz split src name sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz search target /tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi/sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz*gqi*.fib.gz 230810-23:04:58,221 nipype.workflow INFO: [Node] Finished "raw_gqi", elapsed time 1458.586688s. 230810-23:05:00,213 nipype.workflow INFO: [Job 81] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi). 230810-23:05:00,214 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 30/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask 230810-23:05:00,653 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc". 230810-23:05:02,223 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 2 jobs ready. Free memory (GB): 338.28/338.88, Free processors: 14/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask 230810-23:05:07,58 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc". 230810-23:05:07,94 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc". 230810-23:05:07,855 nipype.workflow INFO: [Node] Executing "raw_fib_qc" 230810-23:05:52,241 nipype.workflow INFO: [Node] Finished "rigid_acpc_resample_mask", elapsed time 307.196951s. 230810-23:05:52,243 nipype.workflow INFO: [Node] Finished "rigid_acpc_resample_mask", elapsed time 307.217394s. 230810-23:05:52,383 nipype.workflow INFO: [Job 92] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.rigid_acpc_resample_mask). 230810-23:05:52,384 nipype.workflow INFO: [Job 94] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.rigid_acpc_resample_mask). 230810-23:05:52,385 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc 230810-23:05:52,570 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization". 230810-23:05:54,110 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_normalization_wf/anat_nlin_normalization". 230810-23:05:54,112 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization". 230810-23:05:54,225 nipype.workflow INFO: [Node] Executing "anat_nlin_normalization" 230810-23:05:54,385 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 0/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc 230810-23:16:45,588 nipype.interface INFO: DSI Studio version: Chen"陳" May 16 2023 │ DSI Studio version: Chen"陳" │ action=qc │ source=/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz.odf.gqi.1.25.fib.gz │ loop=/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz.odf.gqi.1.25.fib.gz ├─run qc │ │ output=/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz.odf.gqi.1.25.qc.txt │ │ loading /tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz.odf.gqi.1.25.fib.gz... │ ├─open FIB file sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz.odf.gqi.1.25.fib.gz │ │ │ prepare index file for future accelerated loading │ │ │ saving index file for accelerated loading: sub-JEU26_ses-01_dir-PA_dwi_merged_merged.src.gz.odf.gqi.1.25.fib.gz.idx │ │ │ loading fiber and image data │ │ ├─loading image volumes │ │ │ └─391 ms │ │ │ initiating data │ │ │ FIB file loaded │ │ └─11.602 m │ └─11.6265 m └─11.627 m 230810-23:16:45,627 nipype.workflow INFO: [Node] Finished "raw_fib_qc", elapsed time 697.753961s. 230810-23:16:47,37 nipype.workflow INFO: [Job 88] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc). 230810-23:16:47,38 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:16:49,597 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.merged_qc". 230810-23:16:49,614 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 0/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.merged_qc * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:17:23,620 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.merged_qc" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/pre_hmc_wf/dwi_qc_wf/merged_qc". 230810-23:17:23,675 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.merged_qc". 230810-23:17:23,922 nipype.workflow INFO: [Node] Executing "merged_qc" 230810-23:17:25,256 nipype.workflow INFO: [Node] Finished "merged_qc", elapsed time 1.305447s. 230810-23:17:25,700 nipype.workflow INFO: [Job 99] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.pre_hmc_wf.dwi_qc_wf.merged_qc). 230810-23:17:25,701 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:17:28,313 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask". 230810-23:17:28,313 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_mask". 230810-23:17:28,316 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask". 230810-23:17:29,225 nipype.workflow INFO: [Node] Executing "ds_t1_mask" 230810-23:17:30,934 nipype.workflow INFO: [Node] Finished "ds_t1_mask", elapsed time 1.708326s. 230810-23:17:31,35 nipype.workflow INFO: [Job 103] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mask). 230810-23:17:33,564 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.register_t1_to_raw". 230810-23:17:33,580 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 15/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.register_t1_to_raw * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:17:36,508 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.register_t1_to_raw" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/register_t1_to_raw". 230810-23:17:36,552 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.register_t1_to_raw". 230810-23:17:37,218 nipype.workflow INFO: [Node] Executing "register_t1_to_raw" 230810-23:37:08,133 nipype.workflow INFO: [Node] Finished "register_t1_to_raw", elapsed time 1167.467004s. 230810-23:37:08,803 nipype.workflow INFO: [Job 104] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.register_t1_to_raw). 230810-23:37:08,804 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:37:11,319 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.b0_anat_coreg.b0_to_anat". 230810-23:37:11,323 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 0/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.b0_anat_coreg.b0_to_anat * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:37:44,399 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.b0_anat_coreg.b0_to_anat" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/b0_anat_coreg/b0_to_anat". 230810-23:37:44,454 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.b0_anat_coreg.b0_to_anat". 230810-23:37:44,759 nipype.workflow INFO: [Node] Executing "b0_to_anat" 230810-23:46:55,701 nipype.interface INFO: Report - setting fixed (/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/rigid_acpc_resample_brain/masked_brain_trans.nii) and moving (/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/b0_anat_coreg/b0_to_anat/transform_Warped.nii.gz) images 230810-23:50:53,878 nipype.workflow INFO: [Node] Finished "b0_to_anat", elapsed time 783.961136s. 230810-23:50:55,738 nipype.workflow INFO: [Job 109] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.b0_anat_coreg.b0_to_anat). 230810-23:50:55,739 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:50:58,970 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.t1_mask_to_b0". 230810-23:50:58,973 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 0/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.t1_mask_to_b0 * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:51:00,32 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.t1_mask_to_b0" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/t1_mask_to_b0". 230810-23:51:00,87 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.t1_mask_to_b0". 230810-23:51:00,568 nipype.workflow INFO: [Node] Executing "t1_mask_to_b0" 230810-23:51:32,67 nipype.workflow INFO: [Node] Finished "t1_mask_to_b0", elapsed time 28.331794s. 230810-23:51:33,47 nipype.workflow INFO: [Job 113] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.t1_mask_to_b0). 230810-23:51:33,48 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:51:35,503 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.ds_report_coreg". 230810-23:51:35,503 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.ds_report_coreg" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/ds_report_coreg". 230810-23:51:35,525 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.ds_report_coreg". 230810-23:51:35,823 nipype.workflow INFO: [Node] Executing "ds_report_coreg" 230810-23:51:37,191 nipype.workflow INFO: [Node] Finished "ds_report_coreg", elapsed time 1.367706s. 230810-23:51:37,822 nipype.workflow INFO: [Job 117] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.ds_report_coreg). 230810-23:51:39,685 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.synthstrip". 230810-23:51:39,714 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 0/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.synthstrip * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230810-23:52:13,355 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.synthstrip" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/synthstrip". 230810-23:52:13,410 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.synthstrip". 230810-23:52:14,520 nipype.workflow INFO: [Node] Executing "synthstrip" 230811-00:04:17,641 nipype.workflow INFO: [Node] Finished "synthstrip", elapsed time 723.0709s. 230811-00:04:19,103 nipype.workflow INFO: [Job 123] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.synthstrip). 230811-00:04:19,104 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:04:22,65 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_to_original_grid". 230811-00:04:22,67 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 15/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_to_original_grid * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:04:24,955 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_to_original_grid" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/mask_to_original_grid". 230811-00:04:25,5 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_to_original_grid". 230811-00:04:25,254 nipype.workflow INFO: [Node] Executing "mask_to_original_grid" 230811-00:04:36,564 nipype.workflow INFO: [Node] Finished "mask_to_original_grid", elapsed time 7.908325s. 230811-00:04:37,450 nipype.workflow INFO: [Job 125] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_to_original_grid). 230811-00:04:37,452 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:04:39,911 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_brain". 230811-00:04:40,208 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_mask_to_lps". 230811-00:04:40,210 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 338.28/338.88, Free processors: 14/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_mask_to_lps * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_brain * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:04:41,36 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_brain" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/mask_brain". 230811-00:04:41,37 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_brain". 230811-00:04:41,145 nipype.workflow INFO: [Node] Executing "mask_brain" 230811-00:04:49,689 nipype.workflow INFO: [Node] Finished "mask_brain", elapsed time 4.730971s. 230811-00:04:54,408 nipype.workflow INFO: [Job 127] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_brain). 230811-00:04:54,542 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 15/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_mask_to_lps * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:04:57,247 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_brain_to_lps". 230811-00:04:57,249 nipype.workflow INFO: [MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 338.28/338.88, Free processors: 14/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_brain_to_lps * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_mask_to_lps * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:05:18,17 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_mask_to_lps" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/b0_ref_mask_to_lps". 230811-00:05:18,259 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_mask_to_lps". 230811-00:05:18,889 nipype.workflow INFO: [Node] Executing "b0_ref_mask_to_lps" 230811-00:05:21,21 nipype.interface INFO: Re-orienting /tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/mask_to_original_grid/topup_imain_corrected_avg_trans_mask_trans.nii.gz to LPS 230811-00:05:21,933 nipype.workflow INFO: [Node] Finished "b0_ref_mask_to_lps", elapsed time 3.005176s. 230811-00:05:23,100 nipype.workflow INFO: [Job 128] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_mask_to_lps). 230811-00:05:23,123 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 15/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_brain_to_lps * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:05:34,101 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_brain_to_lps" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/b0_ref_brain_to_lps". 230811-00:05:34,237 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_brain_to_lps". 230811-00:05:34,593 nipype.workflow INFO: [Node] Executing "b0_ref_brain_to_lps" 230811-00:05:37,805 nipype.interface INFO: Re-orienting /tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/mask_brain/masked_brain.nii to LPS 230811-00:05:38,328 nipype.workflow INFO: [Node] Finished "b0_ref_brain_to_lps", elapsed time 3.717674s. 230811-00:05:43,57 nipype.workflow INFO: [Job 130] Completed (qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.b0_ref_brain_to_lps). 230811-00:05:43,58 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:05:46,252 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.eddy". 230811-00:05:46,266 nipype.workflow INFO: [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 338.48/338.88, Free processors: 0/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.eddy * qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization 230811-00:06:19,366 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.eddy" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/dwi_preproc_ses_01_wf/hmc_sdc_wf/eddy". 230811-00:06:19,410 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.eddy". 230811-00:06:27,196 nipype.workflow INFO: [Node] Executing "eddy" 230811-02:35:46,399 nipype.workflow INFO: [Node] Finished "anat_nlin_normalization", elapsed time 12592.156322s. 230811-02:35:47,362 nipype.workflow INFO: [Job 102] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_normalization_wf.anat_nlin_normalization). 230811-02:35:47,363 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.eddy 230811-02:35:48,156 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mni_warp". 230811-02:35:48,156 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mni_warp" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_mni_warp". 230811-02:35:48,178 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mni_warp". 230811-02:35:48,811 nipype.workflow INFO: [Node] Executing "ds_t1_mni_warp" 230811-02:36:52,563 nipype.workflow INFO: [Node] Finished "ds_t1_mni_warp", elapsed time 63.740465s. 230811-02:36:53,172 nipype.workflow INFO: [Job 110] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mni_warp). 230811-02:36:53,878 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mni_inv_warp". 230811-02:36:53,878 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mni_inv_warp" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1_mni_inv_warp". 230811-02:36:53,919 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mni_inv_warp". 230811-02:36:54,599 nipype.workflow INFO: [Node] Executing "ds_t1_mni_inv_warp" 230811-02:37:59,565 nipype.workflow INFO: [Node] Finished "ds_t1_mni_inv_warp", elapsed time 64.954435s. 230811-02:38:00,127 nipype.workflow INFO: [Job 111] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1_mni_inv_warp). 230811-02:38:00,980 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_reports_wf.ds_t1_2_mni_report". 230811-02:38:00,980 nipype.workflow INFO: [Node] Setting-up "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_reports_wf.ds_t1_2_mni_report" in "/tmp/qsiprep_wf/single_subject_JEU26_wf/anat_preproc_wf/anat_reports_wf/ds_t1_2_mni_report". 230811-02:38:00,994 nipype.workflow INFO: [Node] Outdated cache found for "qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_reports_wf.ds_t1_2_mni_report". 230811-02:38:01,585 nipype.workflow INFO: [Node] Executing "ds_t1_2_mni_report" 230811-02:38:04,421 nipype.workflow INFO: [Node] Finished "ds_t1_2_mni_report", elapsed time 2.835261s. 230811-02:38:04,987 nipype.workflow INFO: [Job 112] Completed (qsiprep_wf.single_subject_JEU26_wf.anat_preproc_wf.anat_reports_wf.ds_t1_2_mni_report). 230811-02:38:05,217 nipype.workflow INFO: [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 338.68/338.88, Free processors: 16/32. Currently running: * qsiprep_wf.single_subject_JEU26_wf.dwi_preproc_ses_01_wf.hmc_sdc_wf.eddy