------------------------------------------------------------------ started QSIprep sub-FACT130 Wed Aug 20 14:09:53 EDT 2025 ------------------------------------------------------------------ 250820-14:11:42,134 nipype.workflow IMPORTANT: Running QSIPrep version 1.0.2.dev0+gfc89945.d20250405 License NOTICE ################################################## QSIPrep 1.0.2.dev0+gfc89945.d20250405 Copyright The PennLINC Developers. This product includes software developed by the NiPreps Community (https://nipreps.org/). Portions of this software were developed at the Department of Psychology at Stanford University, Stanford, CA, US. This software is also distributed as a Docker container image. The bootstrapping file for the image ("Dockerfile") is licensed under the MIT License. This software may be distributed through an add-on package called "Docker Wrapper" that is under the BSD 3-clause License. ################################################################# 250820-14:11:42,163 nipype.workflow IMPORTANT: Building QSIPrep's workflow: * BIDS dataset path: /data. * Participant list: ['FACT130']. * Run identifier: 20250820-141018_802ff388-5283-4043-a808-822867d97ffd. 250820-14:11:42,365 nipype.workflow IMPORTANT: Collected data: dwi: - /data/sub-FACT130/ses-post/dwi/sub-FACT130_ses-post_dwi.nii.gz - /data/sub-FACT130/ses-pre/dwi/sub-FACT130_ses-pre_dwi.nii.gz flair: [] fmap: - /data/sub-FACT130/ses-pre/fmap/sub-FACT130_ses-pre_dir-PA_epi.nii.gz roi: [] sbref: [] t1w: - /data/sub-FACT130/ses-post/anat/sub-FACT130_ses-post_T1w.nii.gz - /data/sub-FACT130/ses-pre/anat/sub-FACT130_ses-pre_T1w.nii.gz t2w: [] 250820-14:11:42,388 nipype.workflow INFO: Running nonlinear normalization to template 250820-14:11:42,416 nipype.workflow INFO: Grouping DWI scans 250820-14:11:42,430 nipype.workflow INFO: Found 1 groups of DWI series based on their warp spaces: [ { 'concatenated_bids_name': 'sub-FACT130_ses-post', 'dwi_series': ['/data/sub-FACT130/ses-post/dwi/sub-FACT130_ses-post_dwi.nii.gz'], 'dwi_series_pedir': 'j-', 'fieldmap_info': {'suffix': None}}] 250820-14:11:42,439 nipype.workflow INFO: Found 1 groups of DWI series based on their warp spaces: [ { 'concatenated_bids_name': 'sub-FACT130_ses-pre', 'dwi_series': ['/data/sub-FACT130/ses-pre/dwi/sub-FACT130_ses-pre_dwi.nii.gz'], 'dwi_series_pedir': 'j-', 'fieldmap_info': {'suffix': None}}] 250820-14:11:42,441 nipype.workflow INFO: Found 2 groups of DWI series that can be corrected by eddy: [ { 'concatenated_bids_name': 'sub-FACT130_ses-post', 'dwi_series': ['/data/sub-FACT130/ses-post/dwi/sub-FACT130_ses-post_dwi.nii.gz'], 'dwi_series_pedir': 'j-', 'fieldmap_info': {'suffix': None}}, { 'concatenated_bids_name': 'sub-FACT130_ses-pre', 'dwi_series': ['/data/sub-FACT130/ses-pre/dwi/sub-FACT130_ses-pre_dwi.nii.gz'], 'dwi_series_pedir': 'j-', 'fieldmap_info': {'suffix': None}}] 250820-14:11:42,441 nipype.workflow INFO: Finished grouping DWI scans 250820-14:11:42,441 nipype.workflow INFO: [{'dwi_series': ['/data/sub-FACT130/ses-post/dwi/sub-FACT130_ses-post_dwi.nii.gz'], 'fieldmap_info': {'suffix': None}, 'dwi_series_pedir': 'j-', 'concatenated_bids_name': 'sub-FACT130_ses-post'}, {'dwi_series': ['/data/sub-FACT130/ses-pre/dwi/sub-FACT130_ses-pre_dwi.nii.gz'], 'fieldmap_info': {'suffix': None}, 'dwi_series_pedir': 'j-', 'concatenated_bids_name': 'sub-FACT130_ses-pre'}] 250820-14:11:43,177 nipype.workflow INFO: Automatically using 3, 3, 3 window for dwidenoise 250820-14:11:43,188 nipype.workflow INFO: Using 8 threads in eddy 250820-14:11:43,780 nipype.workflow INFO: Automatically using 1, 1, 1 window for dwidenoise 250820-14:11:43,791 nipype.workflow INFO: Using 8 threads in eddy 250820-14:11:47,890 nipype.workflow INFO: QSIPrep workflow graph with 430 nodes built successfully. 250820-14:12:02,638 nipype.workflow IMPORTANT: QSIPrep started! 250820-14:12:08,355 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.noise_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/noise_images". 250820-14:12:08,379 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.bias_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/bias_images". 250820-14:12:08,459 nipype.workflow INFO: [Node] Executing "bias_images" 250820-14:12:08,488 nipype.workflow INFO: [Node] Finished "bias_images", elapsed time 0.000241s. 250820-14:12:08,562 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.noise_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/noise_images". 250820-14:12:08,604 nipype.workflow INFO: [Node] Executing "noise_images" 250820-14:12:08,667 nipype.workflow INFO: [Node] Executing "noise_images" 250820-14:12:08,681 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.bias_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/bias_images". 250820-14:12:08,718 nipype.workflow INFO: [Node] Executing "bias_images" 250820-14:12:08,723 nipype.workflow INFO: [Node] Finished "noise_images", elapsed time 0.000292s. 250820-14:12:08,738 nipype.workflow INFO: [Node] Finished "noise_images", elapsed time 0.000354s. 250820-14:12:08,785 nipype.workflow INFO: [Node] Finished "bias_images", elapsed time 0.000217s. 250820-14:12:11,255 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.conform_dwis01" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/conform_dwis01". 250820-14:12:11,265 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.get_template_image" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/get_template_image". 250820-14:12:11,281 nipype.workflow INFO: [Node] Executing "conform_dwis01" 250820-14:12:11,359 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.bidssrc" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/bidssrc". 250820-14:12:11,386 nipype.workflow INFO: [Node] Executing "bidssrc" 250820-14:12:11,392 nipype.interface INFO: No T2w images found for subject sub-, but no problem because --anat-modality T1w was selected. 250820-14:12:11,392 nipype.interface WARNING: No 'flair' images found for sub- 250820-14:12:11,393 nipype.interface WARNING: No 'sbref' images found for sub- 250820-14:12:11,393 nipype.interface WARNING: No 'roi' images found for sub- 250820-14:12:11,394 nipype.workflow INFO: [Node] Finished "bidssrc", elapsed time 0.001555s. 250820-14:12:11,414 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.output_grid_wf.voxel_size_chooser" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/output_grid_wf/voxel_size_chooser". 250820-14:12:11,945 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_finalize_ses_post_wf.merged_sidecar" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_finalize_ses_post_wf/merged_sidecar". 250820-14:12:11,974 nipype.workflow INFO: [Node] Executing "merged_sidecar" 250820-14:12:11,982 nipype.workflow INFO: [Node] Finished "merged_sidecar", elapsed time 0.003811s. 250820-14:12:12,14 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.conform_dwis01" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/conform_dwis01". 250820-14:12:12,182 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_finalize_ses_pre_wf.merged_sidecar" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_finalize_ses_pre_wf/merged_sidecar". 250820-14:12:13,77 nipype.interface INFO: Not applying reorientation to /data/sub-FACT130/ses-post/dwi/sub-FACT130_ses-post_dwi.nii.gz: already in LAS 250820-14:12:13,79 nipype.workflow INFO: [Node] Finished "conform_dwis01", elapsed time 1.793708s. 250820-14:12:13,591 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.anat_template_wf.template_dimensions" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/template_dimensions". 250820-14:12:15,234 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_raw_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_raw_images". 250820-14:12:15,234 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.conformation_reports" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/conformation_reports". 250820-14:12:15,236 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_bvals" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_bvals". 250820-14:12:15,236 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_bvecs" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_bvecs". 250820-14:12:15,268 nipype.workflow INFO: [Node] Executing "conformed_bvecs" 250820-14:12:15,269 nipype.workflow INFO: [Node] Finished "conformed_bvecs", elapsed time 0.000212s. 250820-14:12:16,422 nipype.workflow INFO: [Node] Executing "template_dimensions" 250820-14:12:18,114 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_post_dwi_wf.denoiser" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_post_dwi_wf/denoiser". 250820-14:12:18,132 nipype.workflow INFO: [Node] Executing "conformation_reports" 250820-14:12:18,134 nipype.workflow INFO: [Node] Finished "conformation_reports", elapsed time 0.000279s. 250820-14:12:18,149 nipype.workflow INFO: [Node] Executing "denoiser" 250820-14:12:18,150 nipype.workflow INFO: [Node] Executing "conformed_raw_images" 250820-14:12:18,151 nipype.workflow INFO: [Node] Finished "conformed_raw_images", elapsed time 0.000225s. 250820-14:12:19,434 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.raw_merge" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/raw_merge". 250820-14:12:19,816 nipype.workflow INFO: [Node] Executing "raw_merge" 250820-14:12:21,289 nipype.workflow INFO: [Node] Executing "get_template_image" 250820-14:12:21,354 nipype.workflow INFO: [Node] Executing "conform_dwis01" Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz 250820-14:12:21,493 nipype.workflow INFO: [Node] Executing "voxel_size_chooser" 250820-14:12:21,510 nipype.workflow INFO: [Node] Executing "conformed_bvals" 250820-14:12:21,514 nipype.workflow INFO: [Node] Executing "merged_sidecar" 250820-14:12:21,523 nipype.workflow INFO: [Node] Finished "conformed_bvals", elapsed time 0.000236s. 250820-14:12:21,534 nipype.workflow INFO: [Node] Finished "voxel_size_chooser", elapsed time 0.000265s. 250820-14:12:21,736 nipype.workflow INFO: [Node] Finished "merged_sidecar", elapsed time 0.087589s. 250820-14:12:22,770 nipype.interface INFO: Not applying reorientation to /data/sub-FACT130/ses-pre/dwi/sub-FACT130_ses-pre_dwi.nii.gz: already in LAS 250820-14:12:22,908 nipype.workflow INFO: [Node] Finished "conform_dwis01", elapsed time 1.5414970000000001s. 250820-14:12:25,779 nipype.workflow INFO: [Node] Finished "raw_merge", elapsed time 5.940649s. 250820-14:12:36,338 nipype.interface INFO: Generating denoising visual report 250820-14:12:41,715 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_raw_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_raw_images". 250820-14:12:41,716 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.conformation_reports" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/conformation_reports". 250820-14:12:41,717 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_bvals" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_bvals". 250820-14:12:41,718 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_bvecs" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_bvecs". 250820-14:12:41,718 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.test_pre_hmc_connect" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/test_pre_hmc_connect". 250820-14:12:41,736 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_pre_dwi_wf.denoiser" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_pre_dwi_wf/denoiser". 250820-14:12:41,761 nipype.workflow INFO: [Node] Executing "conformed_bvecs" 250820-14:12:41,767 nipype.workflow INFO: [Node] Finished "conformed_bvecs", elapsed time 0.0002s. 250820-14:12:41,768 nipype.workflow INFO: [Node] Executing "conformed_bvals" 250820-14:12:41,769 nipype.workflow INFO: [Node] Executing "conformed_raw_images" 250820-14:12:41,769 nipype.workflow INFO: [Node] Finished "conformed_bvals", elapsed time 0.000205s. 250820-14:12:41,770 nipype.workflow INFO: [Node] Finished "conformed_raw_images", elapsed time 0.000188s. 250820-14:12:41,781 nipype.workflow INFO: [Node] Executing "denoiser" 250820-14:12:41,785 nipype.workflow INFO: [Node] Executing "test_pre_hmc_connect" 250820-14:12:41,786 nipype.workflow INFO: [Node] Finished "test_pre_hmc_connect", elapsed time 3.6e-05s. 250820-14:12:41,786 nipype.workflow WARNING: Storing result file without outputs 250820-14:12:41,790 nipype.workflow INFO: [Node] Executing "conformation_reports" 250820-14:12:41,791 nipype.workflow INFO: [Node] Finished "conformation_reports", elapsed time 0.000206s. 250820-14:12:41,852 nipype.workflow INFO: [Node] Finished "template_dimensions", elapsed time 25.428163s. 250820-14:12:42,602 nipype.interface INFO: Generating denoising visual report 250820-14:12:43,748 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_derivatives_wf/t1_name". 250820-14:12:43,785 nipype.workflow INFO: [Node] Executing "t1_name" 250820-14:12:43,787 nipype.workflow INFO: [Node] Finished "t1_name", elapsed time 0.000738s. 250820-14:12:44,879 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.raw_merge" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/raw_merge". 250820-14:12:44,909 nipype.workflow INFO: [Node] Executing "raw_merge" 250820-14:12:45,301 nipype.workflow INFO: [Node] Finished "raw_merge", elapsed time 0.390836s. 250820-14:13:01,238 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.test_pre_hmc_connect" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/test_pre_hmc_connect". 250820-14:13:01,625 nipype.workflow INFO: [Node] Executing "test_pre_hmc_connect" 250820-14:13:01,703 nipype.workflow INFO: [Node] Finished "test_pre_hmc_connect", elapsed time 3.5e-05s. 250820-14:13:01,778 nipype.workflow INFO: [Node] Setting-up "_anat_conform0" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_conform/mapflow/_anat_conform0". 250820-14:13:01,778 nipype.workflow INFO: [Node] Setting-up "_anat_conform1" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_conform/mapflow/_anat_conform1". 250820-14:13:01,789 nipype.workflow WARNING: Storing result file without outputs 250820-14:13:03,102 nipype.workflow INFO: [Node] Executing "_anat_conform0" 250820-14:13:03,198 nipype.workflow INFO: [Node] Executing "_anat_conform1" 250820-14:13:03,396 nipype.interface WARNING: Removing obliquity from image affine 250820-14:13:03,748 nipype.workflow INFO: [Node] Finished "_anat_conform1", elapsed time 0.443978s. 250820-14:13:04,399 nipype.interface WARNING: Removing obliquity from image affine 250820-14:13:04,642 nipype.workflow INFO: [Node] Finished "_anat_conform0", elapsed time 1.4145780000000001s. 250820-14:13:05,313 nipype.workflow INFO: [Node] Setting-up "_anat_conform0" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_conform/mapflow/_anat_conform0". 250820-14:13:05,338 nipype.workflow INFO: [Node] Cached "_anat_conform0" - collecting precomputed outputs 250820-14:13:05,349 nipype.workflow INFO: [Node] "_anat_conform0" found cached. 250820-14:13:05,367 nipype.workflow INFO: [Node] Setting-up "_anat_conform1" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_conform/mapflow/_anat_conform1". 250820-14:13:05,384 nipype.workflow INFO: [Node] Cached "_anat_conform1" - collecting precomputed outputs 250820-14:13:05,394 nipype.workflow INFO: [Node] "_anat_conform1" found cached. 250820-14:13:09,261 nipype.workflow INFO: [Node] Setting-up "_n4_correct0" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0". 250820-14:13:09,262 nipype.workflow INFO: [Node] Setting-up "_n4_correct1" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1". 250820-14:13:09,288 nipype.workflow INFO: [Node] Executing "_n4_correct0" 250820-14:13:10,24 nipype.workflow INFO: [Node] Finished "denoiser", elapsed time 51.437584s. 250820-14:13:11,444 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_post_dwi_wf.merge_confounds" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_post_dwi_wf/merge_confounds". 250820-14:13:11,444 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_images". 250820-14:13:11,488 nipype.workflow INFO: [Node] Executing "merge_confounds" 250820-14:13:11,488 nipype.workflow INFO: [Node] Executing "conformed_images" 250820-14:13:11,489 nipype.workflow INFO: [Node] Finished "merge_confounds", elapsed time 0.000214s. 250820-14:13:11,489 nipype.workflow INFO: [Node] Finished "conformed_images", elapsed time 0.000188s. 250820-14:13:13,583 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_post_dwi_wf.hstack_confounds" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_post_dwi_wf/hstack_confounds". 250820-14:13:20,983 nipype.workflow INFO: [Node] Executing "_n4_correct1" 250820-14:13:21,25 nipype.workflow INFO: [Node] Finished "denoiser", elapsed time 39.082016s. 250820-14:13:21,63 nipype.workflow INFO: [Node] Executing "hstack_confounds" 250820-14:13:21,209 nipype.workflow INFO: [Node] Finished "hstack_confounds", elapsed time 0.144618s. 250820-14:13:21,997 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_pre_dwi_wf.merge_confounds" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_pre_dwi_wf/merge_confounds". 250820-14:13:21,998 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.conformed_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/conformed_images". 250820-14:13:22,188 nipype.workflow INFO: [Node] Executing "conformed_images" 250820-14:13:22,200 nipype.workflow INFO: [Node] Finished "conformed_images", elapsed time 0.000168s. 250820-14:13:22,437 nipype.workflow INFO: [Node] Executing "merge_confounds" 250820-14:13:22,449 nipype.workflow INFO: [Node] Finished "merge_confounds", elapsed time 0.000156s. 250820-14:13:23,396 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.denoising_confounds" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/denoising_confounds". 250820-14:13:24,389 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_denoise_ses_pre_dwi_wf.hstack_confounds" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_denoise_ses_pre_dwi_wf/hstack_confounds". 250820-14:13:40,821 nipype.workflow INFO: [Node] Executing "hstack_confounds" 250820-14:13:40,828 nipype.workflow INFO: [Node] Finished "hstack_confounds", elapsed time 0.007045s. 250820-14:13:41,393 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.denoising_confounds" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/denoising_confounds". 250820-14:13:43,545 nipype.workflow INFO: [Node] Finished "_n4_correct1", elapsed time 22.403421s. 250820-14:13:43,606 nipype.workflow INFO: [Node] Executing "denoising_confounds" 250820-14:13:43,606 nipype.workflow INFO: [Node] Finished "denoising_confounds", elapsed time 0.000157s. 250820-14:13:44,113 nipype.workflow INFO: [Node] Finished "_n4_correct0", elapsed time 34.653744s. 250820-14:13:45,284 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.merge_dwis" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/merge_dwis". 250820-14:13:45,310 nipype.workflow INFO: [Node] Setting-up "_n4_correct0" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0". 250820-14:13:45,313 nipype.workflow INFO: [Node] Cached "_n4_correct0" - collecting precomputed outputs 250820-14:13:45,313 nipype.workflow INFO: [Node] "_n4_correct0" found cached. 250820-14:13:45,314 nipype.workflow INFO: [Node] Setting-up "_n4_correct1" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct1". 250820-14:13:45,316 nipype.workflow INFO: [Node] Cached "_n4_correct1" - collecting precomputed outputs 250820-14:13:45,316 nipype.workflow INFO: [Node] "_n4_correct1" found cached. 250820-14:13:49,277 nipype.workflow INFO: [Node] Setting-up "_reg_0000" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/reg_000/mapflow/_reg_0000". 250820-14:13:49,279 nipype.workflow INFO: [Node] Setting-up "_reg_0001" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/reg_000/mapflow/_reg_0001". 250820-14:13:49,325 nipype.workflow INFO: [Node] Executing "_reg_0000" 250820-14:13:56,244 nipype.workflow INFO: [Node] Executing "_reg_0001" 250820-14:13:56,265 nipype.workflow INFO: [Node] Executing "denoising_confounds" 250820-14:13:56,281 nipype.workflow INFO: [Node] Finished "denoising_confounds", elapsed time 0.000196s. 250820-14:13:56,395 nipype.workflow INFO: [Node] Executing "merge_dwis" 250820-14:13:58,195 nipype.workflow INFO: [Node] Finished "merge_dwis", elapsed time 1.79924s. 250820-14:13:59,680 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.merge_dwis" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/merge_dwis". 250820-14:14:15,730 nipype.workflow INFO: [Node] Executing "merge_dwis" 250820-14:14:16,509 nipype.workflow INFO: [Node] Finished "merge_dwis", elapsed time 0.418798s. 250820-14:14:16,518 nipype.workflow WARNING: Storing result file without outputs 250820-14:14:16,628 nipype.workflow WARNING: [Node] Error on "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.merge_dwis" (/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_pre_wf/pre_hmc_wf/merge_and_denoise_wf/merge_dwis) 250820-14:14:17,273 nipype.workflow ERROR: Node merge_dwis failed to run on host compute-a8-25.zaratan.umd.edu. 250820-14:14:17,308 nipype.workflow ERROR: Saving crash info to /out/sub-FACT130/log/20250820-141018_802ff388-5283-4043-a808-822867d97ffd/crash-20250820-141417-ga2541-merge_dwis-b6e27e93-92f3-4f8e-8b5c-d8852171aac5.txt Traceback (most recent call last): File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py", line 66, in run_node result["result"] = node.run(updatehash=updatehash) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 525, in run result = self._run_interface(execute=True) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_interface return self._run_command(execute) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 769, in _run_command raise NodeExecutionError(msg) nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node merge_dwis. Traceback: Traceback (most recent call last): File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 401, in run runtime = self._run_interface(runtime) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/qsiprep/interfaces/dwi_merge.py", line 76, in _run_interface to_concat, b0_means, corrections = harmonize_b0s( File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/qsiprep/interfaces/dwi_merge.py", line 700, in harmonize_b0s b0_mean = index_img(dwi_nii, b0_indices).get_fdata().mean() File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nilearn/image/image.py", line 669, in index_img return _index_img(imgs, index) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nilearn/_utils/niimg_conversions.py", line 77, in _index_img img, _get_data(img)[:, :, :, index], img.affine, copy_header=True IndexError: index 4 is out of bounds for axis 3 with size 4 250820-14:14:17,707 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.dwi_qc_wf.raw_src" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_src". 250820-14:14:17,709 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_src" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src". 250820-14:14:17,722 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.gather_inputs" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs". 250820-14:14:34,815 nipype.workflow INFO: [Node] Executing "raw_src" 250820-14:14:51,80 nipype.workflow INFO: [Node] Finished "raw_src", elapsed time 16.261033s. 250820-14:14:51,592 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_src_qc" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc". 250820-14:14:51,602 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_gqi" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi". 250820-14:14:51,876 nipype.workflow INFO: [Node] Executing "raw_gqi" 250820-14:14:52,503 nipype.workflow INFO: [Node] Executing "raw_src" 250820-14:14:52,526 nipype.workflow INFO: [Node] Executing "gather_inputs" 250820-14:14:52,737 nipype.workflow INFO: [Node] Executing "raw_src_qc" 250820-14:14:58,448 nipype.interface INFO: DSI Studio version: Hou "δΎ―" Aug 2 2024 β”Œβ”€β”€πŸ“Ÿcommand line β”œβ”€β”€source=/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc/sub-FACT130_ses-post_dwi_merged.src.gz β”œβ”€β”€action=qc β”œβ”€β”€loop=/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc/sub-FACT130_ses-post_dwi_merged.src.gz β”œβ”€β”€β”¬β”€β”€πŸ“Ÿrun qc β”‚ β”œβ”€β”€is_fib=0 β”‚ β”œβ”€β”€output=qc.txt β”‚ β”œβ”€β”€πŸ’Ύsaving qc.txt β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“Ÿchecking SRC files β”‚ β”‚ β”œβ”€β”€checking /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_src_qc/sub-FACT130_ses-post_dwi_merged.src.gz β”‚ β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“‚open SRC file sub-FACT130_ses-post_dwi_merged.src.gz β”‚ β”‚ β”‚ β”œβ”€β”€generating mask β”‚ β”‚ β”‚ └──⏱3.824s β”‚ β”‚ └──⏱5.024s β”‚ └──⏱5.177s └──⏱5.51s 250820-14:14:58,527 nipype.workflow INFO: [Node] Finished "raw_src_qc", elapsed time 5.771361s. image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-00.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-01.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-02.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-03.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-04.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-05.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-06.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-07.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-08.nii.gz image_source data shape (128, 128, 74, 40) affine: [[-1.99308562e+00 -1.64938539e-01 -2.01247800e-02 1.37222626e+02] [-1.61551073e-01 1.98018265e+00 -2.29734018e-01 -7.70242462e+01] [-3.88713665e-02 2.27314159e-01 1.98666012e+00 -1.41969589e+02] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] metadata: object, endian='<' sizeof_hdr : 348 data_type : b'' db_name : b'TE=84;Time=121435' extents : 16384 session_error : 0 regular : b'r' dim_info : 0 dim : [ 4 128 128 74 40 1 1 1] intent_p1 : 0.0 intent_p2 : 0.0 intent_p3 : 0.0 intent_code : none datatype : float32 bitpix : 32 slice_start : 0 pixdim : [-1. 2. 2. 2.0000002 9.3 0. 0. 0. ] vox_offset : 0.0 scl_slope : nan scl_inter : nan slice_end : 0 slice_code : unknown xyzt_units : 10 cal_max : 0.0 cal_min : 0.0 slice_duration : 0.0 toffset : 0.0 glmax : 0 glmin : 0 descrip : b'MRtrix version: 3.0.4' aux_file : b'' qform_code : scanner sform_code : scanner quatern_b : -0.040913798 quatern_c : 0.9974924 quatern_d : 0.057274643 qoffset_x : 137.22263 qoffset_y : -77.02425 qoffset_z : -141.96959 srow_x : [-1.9930856e+00 -1.6493854e-01 -2.0124780e-02 1.3722263e+02] srow_y : [ -0.16155107 1.9801826 -0.22973402 -77.02425 ] srow_z : [-3.8871367e-02 2.2731416e-01 1.9866601e+00 -1.4196959e+02] intent_name : b'' magic : b'n+1' new_b0_path /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/gather_inputs/sub-FACT130_ses-post_dwi_b0-09.nii.gz 250820-14:16:07,526 nipype.workflow INFO: [Node] Finished "gather_inputs", elapsed time 74.998171s. 250820-14:16:09,810 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.distorted_merge" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/distorted_merge". 250820-14:16:09,900 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.enhance_pre_sdc" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/enhance_pre_sdc". 250820-14:16:09,980 nipype.workflow INFO: [Node] Executing "distorted_merge" 250820-14:16:10,79 nipype.workflow INFO: [Node] Executing "enhance_pre_sdc" 250820-14:16:10,655 nipype.workflow INFO: [Node] Finished "distorted_merge", elapsed time 0.663402s. file none does not exist . 250820-14:16:11,805 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.pad_before_synthstrip_wf.skulled_1mm_resample" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/pad_before_synthstrip_wf/skulled_1mm_resample". 250820-14:16:12,389 nipype.workflow INFO: [Node] Executing "skulled_1mm_resample" 250820-14:16:14,453 nipype.workflow INFO: [Node] Finished "skulled_1mm_resample", elapsed time 2.062874s. 250820-14:16:15,635 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.pad_before_synthstrip_wf.skulled_autobox" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/pad_before_synthstrip_wf/skulled_autobox". 250820-14:16:15,780 nipype.workflow INFO: [Node] Executing "skulled_autobox" 250820-14:16:19,15 nipype.workflow INFO: [Node] Finished "enhance_pre_sdc", elapsed time 8.933472s. 250820-14:16:26,821 nipype.workflow INFO: [Node] Finished "skulled_autobox", elapsed time 11.039676s. 250820-14:16:28,38 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.pad_before_synthstrip_wf.prepare_synthstrip_reference" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/pad_before_synthstrip_wf/prepare_synthstrip_reference". 250820-14:16:28,132 nipype.workflow INFO: [Node] Executing "prepare_synthstrip_reference" 250820-14:16:44,892 nipype.interface INFO: stderr 2025-08-20T14:16:44.892646:++ 3dZeropad: AFNI version=AFNI_23.0.07 (Mar 1 2023) [64-bit] 250820-14:17:03,532 nipype.interface INFO: stderr 2025-08-20T14:17:03.532283:++ output dataset: /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/pad_before_synthstrip_wf/prepare_synthstrip_reference/topup_imain_resample_autobox_SynthStripGrid.nii 250820-14:17:03,575 nipype.workflow INFO: [Node] Finished "raw_src", elapsed time 131.063218s. 250820-14:17:03,887 nipype.workflow INFO: [Node] Finished "prepare_synthstrip_reference", elapsed time 35.753773s. 250820-14:17:06,79 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.dwi_qc_wf.raw_src_qc" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc". 250820-14:17:06,81 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.pad_before_synthstrip_wf.resample_skulled_to_reference" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/pad_before_synthstrip_wf/resample_skulled_to_reference". 250820-14:17:06,82 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.dwi_qc_wf.raw_gqi" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi". 250820-14:17:06,177 nipype.workflow INFO: [Node] Executing "resample_skulled_to_reference" 250820-14:17:06,250 nipype.workflow INFO: [Node] Executing "raw_gqi" 250820-14:17:08,231 nipype.interface INFO: current dir: /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi 250820-14:17:08,248 nipype.interface INFO: input src /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi/sub-FACT130_ses-post_dwi_merged.src.gz 250820-14:17:08,268 nipype.interface INFO: split src name sub-FACT130_ses-post_dwi_merged.src.gz 250820-14:17:08,268 nipype.interface INFO: search target: /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_gqi/sub-FACT130_ses-post_dwi_merged.src.gz*gqi*.fib.gz 250820-14:17:08,285 nipype.workflow INFO: [Node] Finished "raw_gqi", elapsed time 136.40365s. 250820-14:17:10,46 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.raw_fib_qc" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc". 250820-14:17:10,415 nipype.workflow INFO: [Node] Executing "raw_fib_qc" 250820-14:17:14,269 nipype.workflow INFO: [Node] Finished "resample_skulled_to_reference", elapsed time 8.090382s. 250820-14:17:16,96 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.synthstrip" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/synthstrip". 250820-14:17:16,180 nipype.workflow INFO: [Node] Executing "synthstrip" 250820-14:17:21,939 nipype.workflow INFO: [Node] Executing "raw_src_qc" 250820-14:17:25,84 nipype.interface INFO: DSI Studio version: Hou "δΎ―" Aug 2 2024 β”Œβ”€β”€πŸ“Ÿcommand line β”œβ”€β”€source=/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc/sub-FACT130_ses-post_dwi_merged.src.gz.odf.gqi.1.25.fib.gz β”œβ”€β”€action=qc β”œβ”€β”€loop=/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/raw_fib_qc/sub-FACT130_ses-post_dwi_merged.src.gz.odf.gqi.1.25.fib.gz β”œβ”€β”€β”¬β”€β”€πŸ“Ÿrun qc β”‚ β”œβ”€β”€is_fib=1 β”‚ β”œβ”€β”€output=qc.txt β”‚ β”œβ”€β”€πŸ’Ύsaving qc.txt β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“Ÿchecking FIB files β”‚ β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“‚opening sub-FACT130_ses-post_dwi_merged.src.gz.odf.gqi.1.25.fib.gz β”‚ β”‚ β”‚ β”œβ”€β”€prepare index file for future accelerated loading β”‚ β”‚ β”‚ β”œβ”€β”€πŸ’Ύsaving index file for accelerated loading: sub-FACT130_ses-post_dwi_merged.src.gz.odf.gqi.1.25.fib.gz.idx β”‚ β”‚ β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“Ÿloading image volumes β”‚ β”‚ β”‚ β”‚ └──⏱16ms β”‚ β”‚ β”‚ β”œβ”€β”€matched template: ICBM152_adult β”‚ β”‚ β”‚ └──⏱14.164s β”‚ β”‚ └──⏱14.491s β”‚ └──⏱14.603s └──⏱14.606s 250820-14:17:25,104 nipype.workflow INFO: [Node] Finished "raw_fib_qc", elapsed time 14.687907s. 250820-14:17:25,981 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.merge_and_denoise_wf.dwi_qc_wf.merged_qc" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/merge_and_denoise_wf/dwi_qc_wf/merged_qc". 250820-14:17:26,189 nipype.workflow INFO: [Node] Executing "merged_qc" 250820-14:17:26,196 nipype.workflow INFO: [Node] Finished "merged_qc", elapsed time 0.005989s. 250820-14:18:39,21 nipype.interface INFO: DSI Studio version: Hou "δΎ―" Aug 2 2024 β”Œβ”€β”€πŸ“Ÿcommand line β”œβ”€β”€source=/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc/sub-FACT130_ses-post_dwi_merged.src.gz β”œβ”€β”€action=qc β”œβ”€β”€loop=/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc/sub-FACT130_ses-post_dwi_merged.src.gz β”œβ”€β”€β”¬β”€β”€πŸ“Ÿrun qc β”‚ β”œβ”€β”€is_fib=0 β”‚ β”œβ”€β”€output=qc.txt β”‚ β”œβ”€β”€πŸ’Ύsaving qc.txt β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“Ÿchecking SRC files β”‚ β”‚ β”œβ”€β”€checking /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_src_qc/sub-FACT130_ses-post_dwi_merged.src.gz β”‚ β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“‚open SRC file sub-FACT130_ses-post_dwi_merged.src.gz β”‚ β”‚ β”‚ β”œβ”€β”€generating mask β”‚ β”‚ β”‚ └──⏱57.579s β”‚ β”‚ └──⏱1.28343m β”‚ └──⏱1.2843m └──⏱1.28437m 250820-14:18:39,93 nipype.workflow INFO: [Node] Finished "raw_src_qc", elapsed time 77.153053s. 250820-14:18:39,100 nipype.workflow INFO: [Node] Finished "synthstrip", elapsed time 82.896554s. 250820-14:18:40,235 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_to_original_grid" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/mask_to_original_grid". 250820-14:18:40,822 nipype.workflow INFO: [Node] Executing "mask_to_original_grid" 250820-14:18:42,898 nipype.workflow INFO: [Node] Finished "mask_to_original_grid", elapsed time 2.074738s. 250820-14:18:44,457 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.pre_eddy_b0_ref_wf.synthstrip_wf.mask_brain" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/mask_brain". 250820-14:18:44,470 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.eddy" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/eddy". 250820-14:18:45,198 nipype.workflow INFO: [Node] Executing "eddy" 250820-14:18:59,230 nipype.workflow INFO: [Node] Executing "mask_brain" 250820-14:19:03,245 nipype.workflow INFO: [Node] Finished "mask_brain", elapsed time 2.633861s. 250820-14:23:07,339 nipype.interface INFO: current dir: /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi 250820-14:23:07,361 nipype.interface INFO: input src /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi/sub-FACT130_ses-post_dwi_merged.src.gz 250820-14:23:07,389 nipype.interface INFO: split src name sub-FACT130_ses-post_dwi_merged.src.gz 250820-14:23:07,411 nipype.interface INFO: search target: /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_gqi/sub-FACT130_ses-post_dwi_merged.src.gz*gqi*.fib.gz 250820-14:23:07,423 nipype.workflow INFO: [Node] Finished "raw_gqi", elapsed time 361.172319s. 250820-14:23:09,66 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.dwi_qc_wf.raw_fib_qc" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc". 250820-14:23:26,846 nipype.workflow INFO: [Node] Executing "raw_fib_qc" 250820-14:23:52,361 nipype.interface INFO: DSI Studio version: Hou "δΎ―" Aug 2 2024 β”Œβ”€β”€πŸ“Ÿcommand line β”œβ”€β”€source=/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-FACT130_ses-post_dwi_merged.src.gz.odf.gqi.1.25.fib.gz β”œβ”€β”€action=qc β”œβ”€β”€loop=/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/raw_fib_qc/sub-FACT130_ses-post_dwi_merged.src.gz.odf.gqi.1.25.fib.gz β”œβ”€β”€β”¬β”€β”€πŸ“Ÿrun qc β”‚ β”œβ”€β”€is_fib=1 β”‚ β”œβ”€β”€output=qc.txt β”‚ β”œβ”€β”€πŸ’Ύsaving qc.txt β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“Ÿchecking FIB files β”‚ β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“‚opening sub-FACT130_ses-post_dwi_merged.src.gz.odf.gqi.1.25.fib.gz β”‚ β”‚ β”‚ β”œβ”€β”€prepare index file for future accelerated loading β”‚ β”‚ β”‚ β”œβ”€β”€πŸ’Ύsaving index file for accelerated loading: sub-FACT130_ses-post_dwi_merged.src.gz.odf.gqi.1.25.fib.gz.idx β”‚ β”‚ β”‚ β”œβ”€β”€β”¬β”€β”€πŸ“Ÿloading image volumes β”‚ β”‚ β”‚ β”‚ └──⏱22ms β”‚ β”‚ β”‚ β”œβ”€β”€matched template: ICBM152_adult β”‚ β”‚ β”‚ └──⏱24.946s β”‚ β”‚ └──⏱25.196s β”‚ └──⏱25.36s └──⏱25.373s 250820-14:24:04,845 nipype.workflow INFO: [Node] Finished "raw_fib_qc", elapsed time 37.986013s. 250820-14:24:07,742 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.pre_hmc_wf.dwi_qc_wf.merged_qc" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/pre_hmc_wf/dwi_qc_wf/merged_qc". 250820-14:24:24,389 nipype.workflow INFO: [Node] Executing "merged_qc" 250820-14:24:26,208 nipype.workflow INFO: [Node] Finished "merged_qc", elapsed time 1.817786s. 250820-14:28:17,664 nipype.workflow INFO: [Node] Finished "get_template_image", elapsed time 955.719695s. 250820-14:28:17,685 nipype.workflow WARNING: Storing result file without outputs 250820-14:28:19,177 nipype.workflow WARNING: [Node] Error on "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.get_template_image" (/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/get_template_image) 250820-14:28:19,306 nipype.workflow ERROR: Node get_template_image failed to run on host compute-a8-25.zaratan.umd.edu. 250820-14:28:19,364 nipype.workflow ERROR: Saving crash info to /out/sub-FACT130/log/20250820-141018_802ff388-5283-4043-a808-822867d97ffd/crash-20250820-142819-ga2541-get_template_image-27617b43-8cd8-4648-a21b-e4d05802cfcd.txt Traceback (most recent call last): File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py", line 66, in run_node result["result"] = node.run(updatehash=updatehash) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 525, in run result = self._run_interface(execute=True) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_interface return self._run_command(execute) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 769, in _run_command raise NodeExecutionError(msg) nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node get_template_image. Traceback: Traceback (most recent call last): File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/connection.py", line 196, in _new_conn sock = connection.create_connection( File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/util/connection.py", line 85, in create_connection raise err File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/util/connection.py", line 73, in create_connection sock.connect(sa) TimeoutError: [Errno 110] Connection timed out The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen response = self._make_request( File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/connectionpool.py", line 490, in _make_request raise new_e File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/connectionpool.py", line 466, in _make_request self._validate_conn(conn) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/connectionpool.py", line 1095, in _validate_conn conn.connect() File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/connection.py", line 615, in connect self.sock = sock = self._new_conn() File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/connection.py", line 205, in _new_conn raise ConnectTimeoutError( urllib3.exceptions.ConnectTimeoutError: (, 'Connection to templateflow.s3.amazonaws.com timed out. (connect timeout=None)') The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/requests/adapters.py", line 667, in send resp = conn.urlopen( File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen retries = retries.increment( File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/urllib3/util/retry.py", line 519, in increment raise MaxRetryError(_pool, url, reason) from reason # type: ignore[arg-type] urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='templateflow.s3.amazonaws.com', port=443): Max retries exceeded with url: /tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz (Caused by ConnectTimeoutError(, 'Connection to templateflow.s3.amazonaws.com timed out. (connect timeout=None)')) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/nipype/interfaces/base/core.py", line 401, in run runtime = self._run_interface(runtime) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/qsiprep/interfaces/anatomical.py", line 226, in _run_interface template_path = get_template( File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/templateflow/conf/__init__.py", line 69, in wrapper return func(*args, **kwargs) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/templateflow/api.py", line 145, in get _s3_get(filepath) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/templateflow/api.py", line 299, in _s3_get r = requests.get(url, stream=True) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/requests/api.py", line 73, in get return request("get", url, params=params, **kwargs) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/requests/api.py", line 59, in request return session.request(method=method, url=url, **kwargs) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/requests/sessions.py", line 589, in request resp = self.send(prep, **send_kwargs) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/requests/sessions.py", line 703, in send r = adapter.send(request, **kwargs) File "/opt/conda/envs/qsiprep/lib/python3.10/site-packages/requests/adapters.py", line 688, in send raise ConnectTimeout(e, request=request) requests.exceptions.ConnectTimeout: HTTPSConnectionPool(host='templateflow.s3.amazonaws.com', port=443): Max retries exceeded with url: /tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz (Caused by ConnectTimeoutError(, 'Connection to templateflow.s3.amazonaws.com timed out. (connect timeout=None)')) 250820-14:44:02,606 nipype.workflow INFO: [Node] Finished "_reg_0000", elapsed time 1813.135222s. 250820-14:44:08,352 nipype.workflow INFO: [Node] Finished "_reg_0001", elapsed time 1811.792698s. 250820-14:44:22,720 nipype.workflow INFO: [Node] Setting-up "_reg_0000" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/reg_000/mapflow/_reg_0000". 250820-14:44:22,723 nipype.workflow INFO: [Node] Cached "_reg_0000" - collecting precomputed outputs 250820-14:44:22,724 nipype.workflow INFO: [Node] "_reg_0000" found cached. 250820-14:44:22,726 nipype.workflow INFO: [Node] Setting-up "_reg_0001" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/reg_000/mapflow/_reg_0001". 250820-14:44:41,698 nipype.workflow INFO: [Node] Cached "_reg_0001" - collecting precomputed outputs 250820-14:44:41,698 nipype.workflow INFO: [Node] "_reg_0001" found cached. 250820-14:44:41,970 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.anat_template_wf.anat_merge_wf.iterative_alignment_000.averaged_images" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/averaged_images". 250820-14:44:41,972 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.anat_template_wf.anat_merge_wf.iterative_alignment_000.transforms_to_list" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/transforms_to_list". 250820-14:44:42,153 nipype.workflow INFO: [Node] Executing "averaged_images" 250820-14:44:42,692 nipype.workflow INFO: [Node] Executing "transforms_to_list" 250820-14:44:42,740 nipype.workflow INFO: [Node] Finished "transforms_to_list", elapsed time 0.000267s. 250820-14:44:44,2 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.anat_template_wf.anat_merge_wf.iterative_alignment_000.avg_affine" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/avg_affine". 250820-14:44:44,222 nipype.workflow INFO: [Node] Executing "avg_affine" 250820-14:45:02,319 nipype.workflow INFO: [Node] Finished "avg_affine", elapsed time 0.282516s. 250820-14:45:04,494 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.anat_template_wf.anat_merge_wf.iterative_alignment_000.to_list" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/to_list". 250820-14:45:04,674 nipype.workflow INFO: [Node] Executing "to_list" 250820-14:45:04,684 nipype.workflow INFO: [Node] Finished "to_list", elapsed time 0.000284s. 250820-14:45:41,90 nipype.workflow INFO: [Node] Finished "averaged_images", elapsed time 58.93677s. 250820-14:45:42,544 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.dl_prep_wf.skulled_1mm_resample" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/dl_prep_wf/skulled_1mm_resample". 250820-14:45:42,560 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.anat_template_wf.anat_merge_wf.iterative_alignment_000.invert_average" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/anat_template_wf/anat_merge_wf/iterative_alignment_000/invert_average". 250820-14:45:42,723 nipype.workflow INFO: [Node] Executing "invert_average" 250820-14:46:00,623 nipype.workflow INFO: [Node] Executing "skulled_1mm_resample" 250820-14:46:03,5 nipype.workflow INFO: [Node] Finished "skulled_1mm_resample", elapsed time 2.376814s. 250820-14:46:20,570 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.dl_prep_wf.skulled_autobox" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/dl_prep_wf/skulled_autobox". 250820-14:46:20,587 nipype.workflow INFO: [Node] Finished "invert_average", elapsed time 37.851179s. 250820-14:46:20,749 nipype.workflow INFO: [Node] Executing "skulled_autobox" 250820-14:46:22,464 nipype.workflow INFO: [Node] Finished "skulled_autobox", elapsed time 1.7041659999999998s. 250820-14:46:24,575 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.dl_prep_wf.prepare_synthstrip_reference" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/dl_prep_wf/prepare_synthstrip_reference". 250820-14:46:24,716 nipype.workflow INFO: [Node] Executing "prepare_synthstrip_reference" 250820-14:46:24,796 nipype.interface INFO: stderr 2025-08-20T14:46:24.796656:++ 3dZeropad: AFNI version=AFNI_23.0.07 (Mar 1 2023) [64-bit] 250820-14:46:25,48 nipype.interface INFO: stderr 2025-08-20T14:46:25.048472:++ output dataset: /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/dl_prep_wf/prepare_synthstrip_reference/average_resample_autobox_SynthStripGrid.nii 250820-14:46:25,197 nipype.workflow INFO: [Node] Finished "prepare_synthstrip_reference", elapsed time 0.473718s. 250820-14:46:40,997 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.dl_prep_wf.resample_skulled_to_reference" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/dl_prep_wf/resample_skulled_to_reference". 250820-14:46:41,168 nipype.workflow INFO: [Node] Executing "resample_skulled_to_reference" 250820-14:46:43,660 nipype.workflow INFO: [Node] Finished "resample_skulled_to_reference", elapsed time 2.481608s. 250820-14:46:45,153 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.synthstrip_anat_wf.synthstrip" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/synthstrip_anat_wf/synthstrip". 250820-14:46:45,153 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.synthseg_wf.synthseg" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/synthseg_wf/synthseg". 250820-14:46:45,184 nipype.workflow INFO: [Node] Executing "synthseg" 250820-14:46:45,275 nipype.workflow INFO: [Node] Executing "synthstrip" 250820-14:47:07,521 nipype.workflow INFO: [Node] Finished "synthstrip", elapsed time 22.244749s. 250820-14:47:09,173 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.synthstrip_anat_wf.mask_to_original_grid" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/synthstrip_anat_wf/mask_to_original_grid". 250820-14:47:09,254 nipype.workflow INFO: [Node] Executing "mask_to_original_grid" 250820-14:47:23,670 nipype.workflow INFO: [Node] Finished "mask_to_original_grid", elapsed time 14.414076s. 250820-14:47:25,669 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.synthstrip_anat_wf.mask_brain" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/anat_preproc_wf/synthstrip_anat_wf/mask_brain". 250820-14:48:02,927 nipype.workflow INFO: [Node] Executing "mask_brain" 250820-14:48:03,396 nipype.workflow INFO: [Node] Finished "mask_brain", elapsed time 0.459665s. 250820-14:50:35,85 nipype.workflow INFO: [Node] Finished "eddy", elapsed time 1909.868976s. 250820-14:50:35,391 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.back_to_lps" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/back_to_lps". 250820-14:50:35,392 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.cnr_lps" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/cnr_lps". 250820-14:50:35,476 nipype.workflow INFO: [Node] Executing "cnr_lps" 250820-14:50:35,581 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.spm_motion" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/spm_motion". 250820-14:50:35,690 nipype.workflow INFO: [Node] Executing "spm_motion" 250820-14:50:35,980 nipype.interface INFO: Re-orienting /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/eddy/eddy_corrected.eddy_cnr_maps.nii.gz to LPS 250820-14:50:36,405 nipype.workflow INFO: [Node] Finished "cnr_lps", elapsed time 0.928246s. 250820-14:50:37,404 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_finalize_ses_post_wf.transform_dwis_t1.cnr_image_type" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_finalize_ses_post_wf/transform_dwis_t1/cnr_image_type". 250820-14:50:37,433 nipype.workflow INFO: [Node] Executing "cnr_image_type" 250820-14:50:37,486 nipype.workflow INFO: [Node] Finished "cnr_image_type", elapsed time 0.052097s. 250820-14:50:45,33 nipype.workflow INFO: [Node] Executing "back_to_lps" 250820-14:50:45,81 nipype.workflow INFO: [Node] Finished "spm_motion", elapsed time 9.390067s. 250820-14:50:45,365 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.dwi_confs_wf.fdisp" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/dwi_confs_wf/fdisp". 250820-14:50:45,570 nipype.workflow INFO: [Node] Executing "fdisp" 250820-14:50:45,576 nipype.workflow INFO: [Node] Finished "fdisp", elapsed time 0.005087s. 250820-14:50:52,234 nipype.interface INFO: Re-orienting /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/eddy/eddy_corrected.nii.gz to LPS 250820-14:50:59,669 nipype.interface INFO: Reorienting /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/eddy/eddy_corrected.eddy_rotated_bvecs to LPS 250820-14:50:59,675 nipype.workflow INFO: [Node] Finished "back_to_lps", elapsed time 14.641869s. 250820-14:51:06,122 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.split_eddy_lps" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps". 250820-14:51:06,122 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.extract_b0_series" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/extract_b0_series". 250820-14:51:06,150 nipype.workflow INFO: [Node] Executing "extract_b0_series" 250820-14:51:06,154 nipype.workflow INFO: [Node] Executing "split_eddy_lps" 250820-14:51:29,584 nipype.workflow INFO: [Node] Finished "extract_b0_series", elapsed time 23.432975s. 250820-14:52:06,129 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.b0_ref_for_coreg.synthstrip_wf.pad_before_synthstrip_wf.skulled_1mm_resample" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/b0_ref_for_coreg/synthstrip_wf/pad_before_synthstrip_wf/skulled_1mm_resample". 250820-14:52:23,62 nipype.workflow INFO: [Node] Executing "skulled_1mm_resample" 250820-14:52:43,819 nipype.workflow INFO: [Node] Finished "synthseg", elapsed time 358.633599s. 250820-14:53:02,644 nipype.workflow INFO: [Node] Finished "skulled_1mm_resample", elapsed time 19.752546s. 250820-14:53:24,228 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.b0_ref_for_coreg.synthstrip_wf.pad_before_synthstrip_wf.skulled_autobox" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/b0_ref_for_coreg/synthstrip_wf/pad_before_synthstrip_wf/skulled_autobox". 250820-14:53:44,427 nipype.workflow INFO: [Node] Executing "skulled_autobox" 250820-14:54:03,556 nipype.workflow INFO: [Node] Finished "skulled_autobox", elapsed time 1.14932s. 250820-14:55:00,412 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.b0_ref_for_coreg.synthstrip_wf.pad_before_synthstrip_wf.prepare_synthstrip_reference" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/b0_ref_for_coreg/synthstrip_wf/pad_before_synthstrip_wf/prepare_synthstrip_reference". 250820-14:55:57,34 nipype.workflow INFO: [Node] Executing "prepare_synthstrip_reference" 250820-14:55:59,742 nipype.interface INFO: stderr 2025-08-20T14:55:59.742715:++ 3dZeropad: AFNI version=AFNI_23.0.07 (Mar 1 2023) [64-bit] 250820-14:56:00,557 nipype.interface INFO: stderr 2025-08-20T14:56:00.557647:++ output dataset: /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/b0_ref_for_coreg/synthstrip_wf/pad_before_synthstrip_wf/prepare_synthstrip_reference/eddy_corrected_LPS_b0_series_mean_resample_autobox_SynthStripGrid.nii 250820-14:56:00,940 nipype.workflow INFO: [Node] Finished "prepare_synthstrip_reference", elapsed time 1.244321s. 250820-14:56:11,110 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.b0_ref_for_coreg.synthstrip_wf.pad_before_synthstrip_wf.resample_skulled_to_reference" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/b0_ref_for_coreg/synthstrip_wf/pad_before_synthstrip_wf/resample_skulled_to_reference". 250820-14:56:19,48 nipype.workflow INFO: [Node] Executing "resample_skulled_to_reference" 250820-14:56:28,702 nipype.workflow INFO: [Node] Finished "resample_skulled_to_reference", elapsed time 4.208251s. 250820-14:56:38,443 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.b0_ref_for_coreg.synthstrip_wf.synthstrip" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/b0_ref_for_coreg/synthstrip_wf/synthstrip". 250820-14:56:43,252 nipype.workflow INFO: [Node] Executing "synthstrip" 250820-14:57:10,73 nipype.workflow INFO: [Node] Finished "synthstrip", elapsed time 23.811311s. 250820-14:57:12,421 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.b0_ref_for_coreg.synthstrip_wf.mask_to_original_grid" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/b0_ref_for_coreg/synthstrip_wf/mask_to_original_grid". 250820-14:57:28,649 nipype.workflow INFO: [Node] Executing "mask_to_original_grid" 250820-14:57:31,413 nipype.interface INFO: Converting oblique-image bvecs to world coordinate reference frame 250820-14:57:36,776 nipype.workflow INFO: [Node] Finished "mask_to_original_grid", elapsed time 7.60427s. 250820-14:57:50,536 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.hmc_sdc_wf.b0_ref_for_coreg.synthstrip_wf.mask_brain" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/b0_ref_for_coreg/synthstrip_wf/mask_brain". 250820-14:57:50,536 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_post_wf.conf_plot" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/conf_plot". 250820-14:57:52,764 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0000eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0000.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0000.nii.gz 250820-14:58:01,660 nipype.workflow INFO: [Node] Executing "mask_brain" 250820-14:58:09,779 nipype.workflow INFO: [Node] Executing "conf_plot" 250820-14:58:22,316 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0001eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0001.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0001.nii.gz 250820-14:58:23,710 nipype.workflow INFO: [Node] Finished "conf_plot", elapsed time 12.77999s. 250820-14:58:23,767 nipype.workflow INFO: [Node] Finished "mask_brain", elapsed time 14.990232s. 250820-14:59:11,952 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0002eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0002.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0002.nii.gz 250820-14:59:37,560 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0003eddy_corrected_LPS_fix.eddy_rotated_bvecs 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/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0007.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0007.nii.gz 250820-15:06:26,259 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0008eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0008.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0008.nii.gz 250820-15:06:26,437 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0009eddy_corrected_LPS_fix.eddy_rotated_bvecs 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/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0013.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0013.nii.gz 250820-15:06:38,955 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0014eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0014.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0014.nii.gz 250820-15:06:39,169 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0015eddy_corrected_LPS_fix.eddy_rotated_bvecs 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/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0029.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0029.nii.gz 250820-15:07:16,971 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0030eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0030.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0030.nii.gz 250820-15:07:17,186 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0031eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0031.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0031.nii.gz 250820-15:07:17,268 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0032eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0032.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0032.nii.gz 250820-15:07:17,357 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0033eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0033.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0033.nii.gz 250820-15:07:17,594 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0034eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0034.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0034.nii.gz 250820-15:07:18,22 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0035eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0035.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0035.nii.gz 250820-15:07:18,977 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0036eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0036.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0036.nii.gz 250820-15:07:30,268 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0037eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0037.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0037.nii.gz 250820-15:07:30,435 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0038eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0038.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0038.nii.gz 250820-15:07:30,852 nipype.interface INFO: mrinfo -dwgrad -fslgrad /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/_0039eddy_corrected_LPS_fix.eddy_rotated_bvecs /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/sub-FACT130_ses-post_dwi_0039.bval /work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_preproc_ses_post_wf/hmc_sdc_wf/split_eddy_lps/vol0039.nii.gz 250820-15:07:32,203 nipype.workflow INFO: [Node] Finished "split_eddy_lps", elapsed time 986.048246s. 250820-15:08:35,724 nipype.workflow INFO: [Node] Setting-up "qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_finalize_ses_post_wf.transform_dwis_t1.get_interpolation" in "/work/qsiprep_1_0_wf/sub_FACT130_ses_post_pre_wf/dwi_finalize_ses_post_wf/transform_dwis_t1/get_interpolation". 250820-15:08:46,752 nipype.workflow INFO: [Node] Executing "get_interpolation" [1.25 1.25 1.25] [1.8 1.8 1.8000002] 250820-15:08:47,173 nipype.interface WARNING: Using Linear interpolation for upsampling 250820-15:08:47,186 nipype.workflow INFO: [Node] Finished "get_interpolation", elapsed time 0.433043s. 250820-15:08:51,43 nipype.workflow ERROR: could not run node: qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.dwi_preproc_ses_pre_wf.pre_hmc_wf.merge_and_denoise_wf.merge_dwis 250820-15:08:51,816 nipype.workflow ERROR: could not run node: qsiprep_1_0_wf.sub_FACT130_ses_post_pre_wf.anat_preproc_wf.get_template_image 250820-15:08:59,683 nipype.workflow CRITICAL: QSIPrep failed: 2 raised. Re-raising first. Sentry is attempting to send 5 pending events Waiting up to 2 seconds Press Ctrl-C to quit ------------------------------------------------------------------ Ended QSIprep sub-FACT130 Wed Aug 20 15:09:37 EDT 2025 ------------------------------------------------------------------