Node: qsiprep_wf.single_subject_F1098_wf.dwi_preproc_wf.hmc_sdc_wf.eddy
Working directory: /scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/eddy

Node inputs:

args = --ol_nstd=4
cnr_maps = True
dont_peas = False
dont_sep_offs_move = False
environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ', 'OMP_NUM_THREADS': '1'}
estimate_move_by_susceptibility = True
fep = False
field = <undefined>
field_mat = <undefined>
flm = quadratic
fudge_factor = 10.0
fwhm = <undefined>
in_acqp = <undefined>
in_bval = <undefined>
in_bvec = <undefined>
in_file = <undefined>
in_index = <undefined>
in_mask = <undefined>
in_topup_fieldcoef = <undefined>
in_topup_movpar = <undefined>
initrand = <undefined>
interp = spline
is_shelled = True
json = <undefined>
mbs_ksp = <undefined>
mbs_lambda = <undefined>
mbs_niter = <undefined>
method = jac
mporder = 8
multiband_factor = <undefined>
multiband_offset = <undefined>
niter = 5
num_threads = 1
nvoxhp = 1000
out_base = eddy_corrected
outlier_nstd = <undefined>
outlier_nvox = <undefined>
outlier_pos = <undefined>
outlier_sqr = <undefined>
outlier_type = <undefined>
output_type = NIFTI_GZ
repol = True
residuals = True
session = <undefined>
slice2vol_interp = <undefined>
slice2vol_lambda = <undefined>
slice2vol_niter = <undefined>
slice_order = /data/code/slspec.txt
slm = linear
use_cuda = True

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
    result["result"] = node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
    raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node eddy.

Cmdline:
	eddy_cuda --ol_nstd=4 --cnr_maps --estimate_move_by_susceptibility --field=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/topup/fieldmap_HZ --field_mat=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/topup_to_eddy_reg/topup_reg_image_flirt.mat --flm=quadratic --ff=10.0 --acqp=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/gather_inputs/eddy_acqp.txt --bvals=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/pre_hmc_wf/rpe_concat/merge__merged.bval --bvecs=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/pre_hmc_wf/rpe_concat/merge__merged.bvec --imain=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/pre_hmc_wf/rpe_concat/merge__merged.nii.gz --index=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/gather_inputs/eddy_index.txt --mask=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/pre_eddy_b0_ref_wf/synthstrip_wf/mask_to_original_grid/topup_imain_corrected_avg_trans_mask_trans.nii.gz --interp=spline --data_is_shelled --resamp=jac --mporder=8 --niter=5 --nvoxhp=1000 --out=/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/eddy/eddy_corrected --repol --residuals --slspec=/data/code/slspec.txt --slm=linear
Stdout:

Stderr:
	eddy_cuda: error while loading shared libraries: libcublas.so.10: cannot open shared object file: No such file or directory
Traceback:
	Traceback (most recent call last):
	  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 453, in aggregate_outputs
	    setattr(outputs, key, val)
	  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
	    value = super(File, self).validate(objekt, name, value, return_pathlike=True)
	  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
	    self.error(objekt, name, str(value))
	  File "/usr/local/miniconda/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
	    raise TraitError(
	traits.trait_errors.TraitError: The 'out_parameter' trait of an ExtendedEddyOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/eddy/eddy_corrected.eddy_parameters' <class 'str'> was specified.

	During handling of the above exception, another exception occurred:

	Traceback (most recent call last):
	  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 400, in run
	    outputs = self.aggregate_outputs(runtime)
	  File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 460, in aggregate_outputs
	    raise FileNotFoundError(msg)
	FileNotFoundError: No such file or directory '/scratch/qsiprep_wf/single_subject_F1098_wf/dwi_preproc_wf/hmc_sdc_wf/eddy/eddy_corrected.eddy_parameters' for output 'out_parameter' of a ExtendedEddy interface