Node: xcpd_wf.single_subject_SA204_wf.anatomical_wf.rh_sphere_raw_mris Working directory: /projects/b1145/bram/work/xcpd_wf/single_subject_SA204_wf/anatomical_wf/rh_sphere_raw_mris Node inputs: annot_file = args = dataarray_num = environ = {'SUBJECTS_DIR': '/opt/freesurfer/subjects'} functional_file = in_file = /projects/b1145/bram/sa_rsfmri/derivatives/freesurfer/sub-SA204/surf/rh.sphere.reg label_file = labelstats_outfile = normal = origname = out_datatype = gii out_file = parcstats_file = patch = rescale = scalarcurv_file = scale = subjects_dir = /opt/freesurfer/subjects talairachxfm_subjid = to_scanner = to_tkr = vertex = xyz_ascii = Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node result["result"] = node.run(updatehash=updatehash) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run result = self._run_interface(execute=True) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface return self._run_command(execute) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command raise NodeExecutionError(msg) nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node rh_sphere_raw_mris. Cmdline: mris_convert /projects/b1145/bram/sa_rsfmri/derivatives/freesurfer/sub-SA204/surf/rh.sphere.reg /projects/b1145/bram/work/xcpd_wf/single_subject_SA204_wf/anatomical_wf/rh_sphere_raw_mris/rh.sphere.reg_converted.gii Stdout: Stderr: -------------------------------------------------------------------------- ERROR: FreeSurfer license file /opt/freesurfer/license.txt not found. If you are outside the NMR-Martinos Center, go to http://surfer.nmr.mgh.harvard.edu/registration.html to get a valid license file (it's free). If you are inside the NMR-Martinos Center, make sure to source the standard environment. A path to an alternative license file can also be specified with the FS_LICENSE environmental variable. -------------------------------------------------------------------------- Traceback: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 454, in aggregate_outputs setattr(outputs, key, val) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate value = super(File, self).validate(objekt, name, value, return_pathlike=True) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate self.error(objekt, name, str(value)) File "/usr/local/miniconda/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error raise TraitError( traits.trait_errors.TraitError: The 'converted' trait of a MRIsConvertOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/projects/b1145/bram/work/xcpd_wf/single_subject_SA204_wf/anatomical_wf/rh_sphere_raw_mris/rh.sphere.reg_converted.gii' was specified. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 401, in run outputs = self.aggregate_outputs(runtime) File "/usr/local/miniconda/lib/python3.8/site-packages/nipype/interfaces/base/core.py", line 461, in aggregate_outputs raise FileNotFoundError(msg) FileNotFoundError: No such file or directory '/projects/b1145/bram/work/xcpd_wf/single_subject_SA204_wf/anatomical_wf/rh_sphere_raw_mris/rh.sphere.reg_converted.gii' for output 'converted' of a MRIsConvert interface