I have successfully run fMRIPrep (1.3.2) on some data and need to begin modeling. I have never modeled fMRI data so I am a little lost on what the best way to proceed is. Is it recomended to use fitlins or to follow the tutorial Chris made (https://github.com/poldrack/fmri-analysis-vm/blob/master/analysis/postFMRIPREPmodelling/First%20and%20Second%20Level%20Modeling%20(SPM).ipynb)? I started following this tutorial with my data, but it was made 2 years ago so it seems some of the exact lines/variables don’t match. Any suggestions would be appreciated.
I have also seen some tutorials on custom pipelines using Nipype, but they all use custom preprocessing not fMRIPrep outputs.