Hi everyone. I’m a new user of C-PAC, and intend to use the data of ABIDE preprocessed by C-PAC. I need to calculate the functional connectivity of DMN regions and the gray matter volume of the same regions. I found the already extracted time series of different ROIs of different atlases that I can use, but the already anatomical images have been preprocessed by Freesurfer or ANTs, which utilizes different atlases (DKT) that are not used in the extracted time series part. Could you please let me know if it is possible to do anatomical preprocessing using C-PAC and choose the desired atlases, like AAL or Craddok400, instead of the DKT default atlas? If yes, how can I do this?
Also, I’d be thankful if you have better suggestions for addressing my goal.
Thanks in advance