Hi,
I’d like to create Templates with antsMultivariateTemplateConstruction2.sh everything seems to run fine and the script creates a template for each modality.
Example:
antsMultivariateTemplateConstruction2.sh -d 4 -c 2 -k 2 -t SyN -r 1 files.csv
while files.csv contains two sessions with two modalities:
ses0_T1w.nii.gz,ses0_T2w.nii.gz
ses1_T1w.nii.gz,ses1_T2w.nii.gz
I get two templates, just as assumed: antsBTPtemplate0.nii.gz and antsBTPtemplate1.nii.gz
But I can find only two warpfiles: antsBTPses0_T1w01Warp.nii.gz, antsBTPses1_T1w21Warp.nii.gz While I would have expected 4 warpfiles. Also both files are in 4D with size of 3 in the 4th dimension. Additional
Does anyone know if it’s possible to get the warpfiles to register additional files to the template-space directly from antsmultivariatetemplateconstruction2.sh or do I need to run additonal registration?
Thanks.