Hi everyone,
That is my first post, I’m quite new in the field.
In order to discover and practice the BIDS, I followed the tutorial. I downloaded the NKI dataset and did the steps to convert the data from DICOM to NIFTI. It’s fine until the second stage of step 5.
I downloaded MRIcroGC and did all the steps through conversion. But once the conversation is over, I have 2 files, not 3.
The first one is the XXX_MPRAGE.json (as expected) and the second one is the XXXX_MPRAGE.nii.gz. So I 7zipped it to have the .nii file.
First question: is it correct to extract files from gz (step not mentioned in the tutorial)?
And my main problem is I don’t have a XXX_Crop_1.nii no matter how many times I do the operation again. I read the bids_specs documentation but I could’nt find the answer.
I tried to do the validation step but it’s incorrect.
I do not have a lot of expertise in the field so I’m not sure what happened and how to solve it.
If you have advice or answers, I would love to read them!
Thank you.