Dear (bids) experts,
I would like to ask your opinion about the following: At our facility, I wrote some scripts to perform automated export of DICOM files to NIftI. I’ve also attached a meica pipeline and now wrote freesurfer, mriqc, and defacing ‘pipelines’. In the BIDS specification, these derivatives are only specified at the dataset/group level. However, for a setup attached following data acquisition, it is easier (for me) to export within the subject level (so at the subject level, I now export “raw”,“nifti”, “bids”, “qc”, and “meica” per subject). To conform to the BIDS specification, would it be allowed to keep it this way, or should I convert to organization per project and have a single BIDS directory for all subjects? My (wrong) proposed solution would then be to have within the subject folder “bids” -> “sub-xxxx” -> { anat, func, derivatives/pipeline-x }
Looking forward to your expert opinions, or suggestions,
Jan-Bernard