Good morning from New York I am a masters student that is working on MEG data and is transitioning my projects NIX related data format to BIDS. I am having some trouble understanding the complex language in the source page and wiki about how to name derivatives. In specific I have created (Independent Component Analysis) files on MEG sensor data and have as a result files named as GUY1_ii_run1_raw_tsss_ica.fif and its original MEG data file is named GUY1_ii_run1_raw_tsss.fif.
GUY1 is the patient, ii stand for interictal data, run1 is simply which number of run it was recorded on and raw_tsss is the format of the data.
Does that mean I should create a folder named ‘data’ which contains the BIDS formated meg data and a separate folder named ‘derivatives’ which contains a subfolder named ‘ICA’ ?
And does that mean that the correct file formatted name after converting to bids format is"[N3S2_N3S2_ii_run1_raw_tsss_mc]sub-N3S2_sess-01_task-resting_state_run-01[ii]_ica.fif" ?
The naming convention is not very clear on their website if I have to place if the patients data is either ictal(i) or interictal(ii) in the key value label. Any guidance or advice would be appreciated towards how to name derivatives.
Welcome to NeuroStars and thank you for your question. Perhaps to clarify regarding the filename - derivatives follow a similar key-value pairing scheme seen in the raw data (e.g. MEG). One example carrying over this naming scheme can be seen in how to name masks. Regarding the folder placement - the derivatives folder will be placed at the root of the dataset.
Currently, there is an extension proposal seeking to describe these outputs.
For ictal/interictal, I’m not sure whether you would want to specify that with HED tags in an events.tsv. If you do want it easily distinguished by filename, you could use acq-interictal, like sub-N3S2_ses-01_task-rest_acq-interictal_run-01_meg.fif. Another place you might put the data is in a new column in scans.tsv, if a scan is always either ictal or interictal, and you don’t ever have a case where a scan encompasses both phases.