Can I use fmriprep to analyze only the anatomical part?
Hi @Michelle, and welcome to neurostars!
Yes you can, with the
--anat-only flag, but I would suggest using smriprep to do this, as this is the anatomical pipeline invoked by fMRIprep.
kind reminder to check the documentation or run your command with the
--help flag: this usually may have the answer you are looking for